<?xml version="1.0" encoding="UTF-8"?>
<uniprot xmlns="http://uniprot.org/uniprot"
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 xsi:schemaLocation="http://uniprot.org/uniprot http://www.uniprot.org/docs/uniprot.xsd">
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU37</accession>
    <name>R6XU37_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zinc_ribbon_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00555</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27248">
        <property type="protein sequence ID" value="CDD27248"/>
        <property type="gene ID" value="BN815_00555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.1060.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038587">
        <property type="entry name" value="L40e_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026870">
        <property type="entry name" value="Zinc_ribbon_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13240">
        <property type="entry name" value="zinc_ribbon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zinc_ribbon_2" evidence="1">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="13670" checksum="E28180153A202675" modified="2013-07-24" version="1">MGILDDVVINAKTAAEAVGKKAGQIVDVSKLRFNVAELNAEISKRYEALGEYVYENCREALAEDAESVGKMAEIDELVNQRNILTKELVDKQNKVVCPSCGKQSPITASYCSSCGAKLTPDEEKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVK5</accession>
    <name>R6XVK5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exodeoxyribonuclease VII large subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000062">
        <property type="protein sequence ID" value="CDD27783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27783">
        <property type="protein sequence ID" value="CDD27783"/>
        <property type="gene ID" value="BN815_00715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020579">
        <property type="entry name" value="Exonuc_VII_lsu_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02601">
        <property type="entry name" value="Exonuc_VII_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exonuc_VII_L" evidence="1">
        <location>
            <begin position="2"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="59" mass="6140" checksum="D90BDD631FA3B5E2" modified="2013-07-24" version="1">MLAGTLDALSPLRVLSRGYAMVTKEGRVLKSAGEAAPGDKVAIRLAEGELSAEILEKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWI1</accession>
    <name>R6XWI1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00755</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28083">
        <property type="protein sequence ID" value="CDD28083"/>
        <property type="gene ID" value="BN815_00755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424748" evidence="1">
        <location>
            <begin position="31"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15638" checksum="7C3A651E818F4C3A" modified="2013-07-24" version="1">MKGKKFLAAFGLVLLIGVGTGAFFMGKSVAQDVTTWKEAGFLYATLIKPVDDHTLLVQGSSVNREEERGQFLLSIDEDTEIRIHGLEWEVKDMFPGMRFAISYEGEIPEGDLPTLSHVLAIDLQGNYHEDGSWSYEEELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XX38</accession>
    <name>R6XX38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28318">
        <property type="protein sequence ID" value="CDD28318"/>
        <property type="gene ID" value="BN815_00816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013494">
        <property type="entry name" value="CHP02678"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09661">
        <property type="entry name" value="DUF2398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02678">
        <property type="entry name" value="TIGR02678"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="388" mass="45077" checksum="C39EAF3A19898BEF" modified="2013-07-24" version="1">MYEFRFLLDRFWVTRAENKDLYFAVKRALPHYRRLVNEQLGWNLIVNEAVVKLEKVPAKAMAWMGIQEFQEKLDYCLLCALLLFLSDLDDGEQFLLSSLTEGLEALLAEVQPVDWTRFPHRKSLVRVLQYAQRTGMLLVYDGASEGFGSDQTQEVLYENTGLSRHFPTHFGRDTLHCASIEDYEAFLWEGEEADRGRQRIQRVYRQLALAPALYWSRQNRSDYEYVKNQRSWLNRHLGEAMGGELQIHRNGAFFVLDEESRFGLVHPREAAIPEAALLLCGQLREQVAAGVYPRQEDDTVFLTRREFQQELAQCRQRCGAGWGRRLRELPQEKLAQELVAYMAGWMLLEERDEGFLLYPAVGKWIGHYPAGYQGGPGEEKWDEPLEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYX3</accession>
    <name>R6XYX3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01012</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000111">
        <property type="protein sequence ID" value="CDD28953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28953">
        <property type="protein sequence ID" value="CDD28953"/>
        <property type="gene ID" value="BN815_01012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="338" mass="39172" checksum="3CBD5C803E959B94" modified="2013-07-24" version="1">MKLLSVTVPCYNSQDYMRHCVETLLPGGDEVEILIVDDGSKDGTAAIADQLQAQYPTIVRAIHQENAGHGGAVMKGLENATGLYFKVVDSDDWVDTQVLKDLLALLRRFAQQGEGVDMVVSDFVYDKVGARHKKVMRYPFAIPQNKVLRWEEVGSFPKGHYLLMHSVIYRTQLLRESGLDLPRHTFYVDNLFVYVPMAQVKTLYYVDKVFYHYFIGREDQSVQEGVMIRRIDQQLRVNRLMLAQVDLDQVENKRLRRYLLNYLEIITTISTVLLFRAGDKEHLEKARAFWRDMARDYPRHYQLLSRRLFGRVLNMPGPGGRWIALAAYWLSQKVFGFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYX8</accession>
    <name>R6XYX8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xanthine/uracil/vitamin C permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00003</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. Azg-like subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000112">
        <property type="protein sequence ID" value="CDD28958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28958">
        <property type="protein sequence ID" value="CDD28958"/>
        <property type="gene ID" value="BN815_00003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904823">
        <property type="term" value="P:purine nucleobase transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045018">
        <property type="entry name" value="Azg-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026033">
        <property type="entry name" value="Azg-like_bact_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43337">
        <property type="entry name" value="PTHR43337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005353">
        <property type="entry name" value="PbuG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="53"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="347"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="400"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="439"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="458" mass="48270" checksum="5B86A62A7D7EEFB4" modified="2013-07-24" version="1">MEKFFKLKENGTTVGREIVAGLTTFFAMAYIIVVNPNTLSGRAGGLEEELMPWGAVFLATIIASIIGTLVMGLVANVPYAQAPGMGLNAFFVYTVCLGLGFTWQQTLSMVFICGLINILITVTKLRKFIIKSIPRSLQNAIGGGIGIFVAYIGFLNVGFVNFGSGVPAMATLNTNVLWLFVIGLVLTIVLLVCNVKGAILIGIVATAIIGIPMQVTSLGSSISFTEACQQLPTTFGAIFTSAGLPSLFSDAAKIPLVLITIFAFSISDTFDTIGTFIGTGRRTGIFSDEDEKAMETKAGFHSKMDKALFADATATSIGSIFGTSNTTTFVESAAGIGAGGRTGLTSVVVAICFALSAFLATFVSAIPSAATAPALVLVGVMMTSSFKEIKWDDISEAIPAFFAGIFMALCYSISYGIAMGFITYCIVKVCKGEAKKVHPILWVVTALFILNFILLAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZK2</accession>
    <name>R6XZK2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fumerase_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00485</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27010">
        <property type="protein sequence ID" value="CDD27010"/>
        <property type="gene ID" value="BN815_00485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004647">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdB-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036660">
        <property type="entry name" value="Fe-S_hydroAse_TtdB_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05683">
        <property type="entry name" value="Fumerase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117457">
        <property type="entry name" value="SSF117457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00723">
        <property type="entry name" value="ttdB_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase_C" evidence="3">
        <location>
            <begin position="4"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="176" mass="18632" checksum="1B01EA6FD2C2FC3E" modified="2013-07-24" version="1">MADAVRVNTEEMAQVAPTLRAGQRVLLSGVCYTSRDAAHKRITQMLDKGETPPYDLQGAAIYYAGPTPAPEGLPIGSCGPTTSGRMDPYTPRFLDLGLKCMIGKGKRSPEVIEAMKRNGAVYLCAIGGAGALAAQCIESAEVIAFEDLGCESVKRLVLKDFPLIVAIDSQGNSVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZK4</accession>
    <name>R6XZK4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">5-enolpyruvylshikimate-3-phosphate synthase</fullName>
            <shortName evidence="7">EPSP synthase</shortName>
            <shortName evidence="7">EPSPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroA</name>
        <name evidence="9" type="ORF">BN815_01085</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the EPSP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000131">
        <property type="protein sequence ID" value="CDD29198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29198">
        <property type="protein sequence ID" value="CDD29198"/>
        <property type="gene ID" value="BN815_01085"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01556">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00210">
        <property type="entry name" value="EPSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000505">
        <property type="entry name" value="EPSPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01356">
        <property type="entry name" value="aroA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="12"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="21"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate" evidence="7">
        <location>
            <begin position="90"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="7">
        <location>
            <begin position="162"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="386"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="412"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="434" mass="45611" checksum="2FCE548170F25A05" modified="2013-07-24" version="1">MAQVIYGNQFQGGLVRIPPSKSAAHRQVLCAALSRGKCTLSHVDMSEDIQATVAAVEALGAKVSFDEAAATLTLDAANLGRQNAAIDCRESGSTLRFLIPIAAALGVSARFVGRGRLPERPLGVYGELLPAHGVEFRSQGGLPLELSGKLKSGVYRMPGNVSSQFVTGLLFALPLLEGDSEIVLTSPLESKGYVALTLSILREYGVTAQETPQGWHIPGGQRYTPHNCQVEGDWSQAAFFLCMAALSPTGAPVAIQGLDAASLQGDKACVELFRQFGLPVSWEGGVLTARNPRAREPFGGLRGITIDAAQIPDMVPALSVCAALSQGETRILNAQRLRLKESDRLAAMAEAISGLGGRAQATADGLRIWGVPQLQGGVAQGKNDHRVVMALAAAGLRCAGTLSVTDAQSIRKSYPGFFRDFTTLGGSAHVLDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZZ8</accession>
    <name>R6XZZ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Xylulose kinase</fullName>
            <shortName evidence="1">Xylulokinase</shortName>
            <ecNumber evidence="1">2.7.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">xylB</name>
        <name evidence="4" type="ORF">BN815_00537</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + D-xylulose = ADP + D-xylulose 5-phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10964"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17140"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.17"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FGGY kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.17" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27200">
        <property type="protein sequence ID" value="CDD27200"/>
        <property type="gene ID" value="BN815_00537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004856">
        <property type="term" value="F:xylulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005997">
        <property type="term" value="P:xylulose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006000">
        <property type="entry name" value="Xylulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01312">
        <property type="entry name" value="XylB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0859">Xylose metabolism</keyword>
    <feature type="domain" description="FGGY_N" evidence="2">
        <location>
            <begin position="14"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="3">
        <location>
            <begin position="296"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU364073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="514" mass="54933" checksum="2786A727F853578E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0I7</accession>
    <name>R6Y0I7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01176</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29503">
        <property type="protein sequence ID" value="CDD29503"/>
        <property type="gene ID" value="BN815_01176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="16375" checksum="532E2C0BBD6DFA49" modified="2013-07-24" version="1">MRKRTELDERQLWQRGNVFKHAFVFLLGALAAEGACKAFGITWAEGPWEAVLLIWASVALCWWEFILRDISPMGRSQKTFFFAMGLCGLCIVVMELASLAVGRGPLLEEAMLTSAGATTLIGCLMASILGVYLAKSFRDKRRPAGDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1A2</accession>
    <name>R6Y1A2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00106</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29848">
        <property type="protein sequence ID" value="CDD29848"/>
        <property type="gene ID" value="BN815_00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9720" checksum="89D265D420267F3E" modified="2013-07-24" version="1">MKNIPPHVKLSLPDGSRLTAVAYSQEDYPGINLYLSREGHPEELICFVEFNRERQAGENICIGVYQPDMDDTVYYEPYRVKGGQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1K0</accession>
    <name>R6Y1K0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DRTGG domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29943">
        <property type="protein sequence ID" value="CDD29943"/>
        <property type="gene ID" value="BN815_01317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010766">
        <property type="entry name" value="DRTGG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028979">
        <property type="entry name" value="Ser_kin/Pase_Hpr-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07085">
        <property type="entry name" value="DRTGG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75138">
        <property type="entry name" value="SSF75138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DRTGG" evidence="1">
        <location>
            <begin position="6"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="110" mass="11492" checksum="FAF8A7D560F9AD25" modified="2013-07-24" version="1">MTVKEMAAACGWTLLAGGEGEDNQIDGCYIGDLLSWVMARAQSGNVWITVMGNVNAIAVATLTDVSCIVLTENAALDADAASKAEMQGIPVYGCGANSYQTAVQVYKLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1K6</accession>
    <name>R6Y1K6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphoserine aminotransferase</fullName>
            <ecNumber evidence="6">2.6.1.52</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Phosphohydroxythreonine aminotransferase</fullName>
            <shortName evidence="6">PSAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">serC</name>
        <name evidence="9" type="ORF">BN815_01321</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>2-oxoglutarate + 4-(phosphooxy)-L-threonine = (R)-3-hydroxy-2-oxo-4-phosphooxybutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16573"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58452"/>
            <dbReference type="ChEBI" id="CHEBI:58538"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 6 7">
            <text>2-oxoglutarate + O-phospho-L-serine = 3-phosphooxypyruvate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:14329"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="6">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 6 7">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.52" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29948">
        <property type="protein sequence ID" value="CDD29948"/>
        <property type="gene ID" value="BN815_01321"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004648">
        <property type="term" value="F:O-phospho-L-serine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00611">
        <property type="entry name" value="PSAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00160">
        <property type="entry name" value="SerC_aminotrans_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022278">
        <property type="entry name" value="Pser_aminoTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43247">
        <property type="entry name" value="PTHR43247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000525">
        <property type="entry name" value="SerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01364">
        <property type="entry name" value="serC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7 9" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0718">Serine biosynthesis</keyword>
    <keyword evidence="6 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="8">
        <location>
            <begin position="4"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="6">
        <location>
            <begin position="76"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="6">
        <location>
            <begin position="237"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="6">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="361" mass="40169" checksum="E3E0B0894C8F06B7" modified="2013-07-24" version="1">MSRVYNFSAGPSMLPEPVLQKAAAEMMDYQGSGQSVMEMSHRSKVFDGIYQEAQALWRDVMGIPDTYKVLFLQGGASSQFAAVPMNLMTKSGKADYVLSGQFSTKAYKEAARYGDVKAVASSKEDNFSHIPALDSQEFRPDADYFHICMNNTIYGTVWHQLPDTGNVPLVADISSCILSKPIDVSRFGLLYAGAQKNVAPAGLTIVIVREDLLGEPMEFTPTMFNYKVMAENDSMYNTPPCWPIYISKLVLEWIKKDIGGLEKMEERNVRKAQLLYDFLDNSSLFTGCADKADRSIMNVTFVTGDKDLDAKFVKESTAAGFVNLKGHRSVGGMRASIYNAMPEEGIVKLVEFMKKFELENK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3P0</accession>
    <name>R6Y3P0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-oxoacyl-[acyl-carrier-protein] synthase 3</fullName>
            <ecNumber evidence="8">2.3.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">3-oxoacyl-[acyl-carrier-protein] synthase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Beta-ketoacyl-ACP synthase III</fullName>
            <shortName evidence="8">KAS III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fabH</name>
        <name evidence="11" type="ORF">BN815_00849</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>acetyl-CoA + H(+) + malonyl-[ACP] = 3-oxobutanoyl-[ACP] + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9625"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78450"/>
            <dbReference type="EC" id="2.3.1.180"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the thiolase-like superfamily. FabH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.180" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000091">
        <property type="protein sequence ID" value="CDD28470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28470">
        <property type="protein sequence ID" value="CDD28470"/>
        <property type="gene ID" value="BN815_00849"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033818">
        <property type="term" value="F:beta-ketoacyl-acyl-carrier-protein synthase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01815">
        <property type="entry name" value="FabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004655">
        <property type="entry name" value="FabH_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00747">
        <property type="entry name" value="fabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 8" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="10">
        <location>
            <begin position="104"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="9">
        <location>
            <begin position="228"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="ACP-binding" evidence="8">
        <location>
            <begin position="245"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="244"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="318" mass="34578" checksum="5355F0F1B22280A6" modified="2013-07-24" version="1">MSFQILGTGSFAPEKIVTNDDLSHMVETSDEWITKRVGVKQRHVCTTETATDMGVAAARRALENSGVKPEELDMIIAATISADTISPGLAGMVQNRIGAHCPCFDINVACPGFLYALDVADGFFVRGRVKKVLVVSAERMSGLIDWTDRSTCVIFGDGAGAAVLGEGEGYLSSVLTTKGGEDVISIPTKWDNSPFYEHQLKKNVVNMQGQETYKFAVTSMVRDVRQVMEEAGITGDQVKAVIPHQANYRIINEARRRLPEIAPEKFLINIDRYGNTSSASEPILLDEANRQGLLQRGDYVVLTAFGGGLSTAACVVRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Y4</accession>
    <name>R6Y3Y4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal kinase</fullName>
            <ecNumber evidence="1">2.7.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01893</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.35" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000307">
        <property type="protein sequence ID" value="CDD30688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30688">
        <property type="protein sequence ID" value="CDD30688"/>
        <property type="gene ID" value="BN815_01893"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008478">
        <property type="term" value="F:pyridoxal kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009443">
        <property type="term" value="P:pyridoxal 5'-phosphate salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01173">
        <property type="entry name" value="pyridoxal_pyridoxamine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004625">
        <property type="entry name" value="PyrdxlKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10534">
        <property type="entry name" value="PTHR10534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="2">
        <location>
            <begin position="75"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="31406" checksum="4CC1D30289A609F6" modified="2013-07-24" version="1">MNYKEMSCLAIHDISGVGKCSLTVALPVLSCCGVETSVLPTAVLSTHTGGFTGFTYRDLTGDILPMARHWKSLGCRFQALYTGFLGSEAQIGLVEEMFDWFGGEDTLILVDPVMGDGGKLYQTYTPEMASGMARLCGRADIVVPNMTEACHLLGRPYNPGPYTQGEIAEILQGLCAMGPKMAVLTGVWLQEGALGTACYDSQVGEAKLFLTDRIEGFYHGTGDLFASALLGGLLNGAPLEEACALATEFTWRTIETTFEKSPDHRFGPKFECHLPWLGEKMEELRKNHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y476</accession>
    <name>R6Y476_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Thiazole biosynthesis protein ThiH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01967</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30763">
        <property type="protein sequence ID" value="CDD30763"/>
        <property type="gene ID" value="BN815_01967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010722">
        <property type="entry name" value="BATS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012726">
        <property type="entry name" value="ThiH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034428">
        <property type="entry name" value="ThiH/NoCL/HydG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43583">
        <property type="entry name" value="PTHR43583"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43583:SF1">
        <property type="entry name" value="PTHR43583:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06968">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00301">
        <property type="entry name" value="2-iminoacetate_synthase_(ThiH)"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00876">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02351">
        <property type="entry name" value="thiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="BATS" evidence="6">
        <location>
            <begin position="300"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="419" mass="47995" checksum="AAD10F22A7D544B6" modified="2013-07-24" version="1">MAQQENQFFIDSEFLSPQALEKKHRLETDPASRKSHLEYLPGMEVLQSDVMEKVLSQMDSYDTTQYTARDVRAALEHDTCTIEDFKALLSPAAEPFLEEMAQRACLETKKHFGNTVYLFTPLYIANYCENYCVYCGFNCYNHIHRMKLSMEQIEHEMEIIAQSGMEEILLLTGESRSMSSVEYIGQACKLARKYFRMVGLEIYPVNTDEYRYLHECGADYVTVFQETYDRDKYETLHLMGHKRVWPYRFDAQERALRGGMRGVAFSALLGLADFRKDALASALHVYYLQRKYPAAEMSLSCPRLRPIINNDKINPLDVGERQLCQVLCAYRIFLPFVGITVSSREDAAFRNGIVRIAATKVSAGVSTGIGDHESKYQGKEAEDAGDEQFEISDSRSLSQMYQDMAAEGLQPVLNDYLYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y494</accession>
    <name>R6Y494_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30783">
        <property type="protein sequence ID" value="CDD30783"/>
        <property type="gene ID" value="BN815_01987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8302" checksum="CB6548E50608ABD6" modified="2013-07-24" version="1">MDTVQKMERYVERSRVFDHGHGMTQTEWMALIAKAEGGTSNICQAVSLAYNYGRAKGYREAQRRFCPTERRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4L6</accession>
    <name>R6Y4L6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted O-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00963</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28810">
        <property type="protein sequence ID" value="CDD28810"/>
        <property type="gene ID" value="BN815_00963"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="31"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="27611" checksum="035FFC29E2F30C76" modified="2013-07-24" version="1">MEERLQNTTWEPLCGGARVLVSPQHTFGTDAVLLAHFAAPRPRERWADLGTGCGVIPLLWRVRTQAGAITGVEMQEKAAWQARRSVEENGFSATVDIVQGDARQLGALFPAGSLDGIACNPPYTAPGAGIPSEDGARRAARQGDSLSLEDVARGARYALRFGGRLCLCLRPQRLAEAVEVFHSHQLEPKRLRLVQQRAGKAPFLFLLECRRGGKPGIEVGPVLLLEREDGSPTQEIEAIYGDYRDNPEHRKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4U5</accession>
    <name>R6Y4U5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02112</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000350">
        <property type="protein sequence ID" value="CDD30953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30953">
        <property type="protein sequence ID" value="CDD30953"/>
        <property type="gene ID" value="BN815_02112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="190"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="295" mass="34978" checksum="FE44B553D7D5DD81" modified="2013-07-24" version="1">MNHTVEKREGFKGERMIVLPTEAFRDYVEHPLVRRLYLTDVGFFPCAQDHYRERKDGIEEYILIYCTEGKGVIRVEGREYHLGPNQAFCIPRWRGHRYWACGGEPWSILWVHFKGEDTAFYPLDEERLVSFSGIHEENRMMFLFDLLFRALEGDYTLGNFIYLSQVLSLILGELYQRERKGGGEGSRRVTDIVRYMVRHLGEPLTLEQLAQEFDLSKSGLHALFQKHTGRSPMDFFLRLKMKEACKMLRSTSLRVYEVAQRLGYQDPYYFSRIFRKVVGISPKEYQNSEYFHYQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5A6</accession>
    <name>R6Y5A6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LPS-assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29035">
        <property type="protein sequence ID" value="CDD29035"/>
        <property type="gene ID" value="BN815_01037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="121" mass="13829" checksum="32D6B5D4BAD1FA21" modified="2013-07-24" version="1">MKIDNNPIEKAAMEQFHQGNRQEGLRLQEEFAAAFRAEFAEKDHCSCQKACRYHGNCKECVAIHRAHQEHVPNCMRPMLNAKLKLLSQLTEHTLANEIEAPREILRKDAPGQRAPEGRGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5E3</accession>
    <name>R6Y5E3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000122">
        <property type="protein sequence ID" value="CDD29085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29085">
        <property type="protein sequence ID" value="CDD29085"/>
        <property type="gene ID" value="BN815_01055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="50"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="12005" checksum="9936956D769B8316" modified="2013-07-24" version="1">MGTMLERPWKYPRMLDSMEMKNSVGARAIMAKLDSGLPYHWAIWLAPKNITRQPNSPRKKNSQKATENTRSASRRRPWEVAVPTMRETATGSPAVESIKNRPKIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5H3</accession>
    <name>R6Y5H3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02337</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31193">
        <property type="protein sequence ID" value="CDD31193"/>
        <property type="gene ID" value="BN815_02337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="301"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="352" mass="38051" checksum="F5B45879DD91B38E" modified="2013-07-24" version="1">MDAVVAYDLTKEYEGQAALSGLNLQVPQGEAFACVGERGCGKTTLVRLLSGLCRPTSGECTVLGLSPSHEPQRLHSVAGTVLDSAHLYTGMTLYENLHFFAGLHGLDDNDALERSSFLLHKLDIWEGRDLPVEKLSTGVVRRASLARALMHSPKVLLVDDSAGGLDQETAQATRELLTYVAAEEGVTLFLCSSNMHFAQLLCRNFAILRQGVLLARGDLESLRTGAGVSYRACLRLGEGSPAPAGFHWNDGFWEREIESQEDMPKIISRAVGAGARLYEARLDRPTLKEIYAAWLEGGRRKVKESHGTADETPTDGSFWQPGEDEPAALPGEEPPEPAPGQGAPEEGVGEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5K4</accession>
    <name>R6Y5K4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L28</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmB</name>
        <name evidence="5" type="ORF">BN815_02367</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31223">
        <property type="protein sequence ID" value="CDD31223"/>
        <property type="gene ID" value="BN815_02367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00373">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026569">
        <property type="entry name" value="Ribo_L28/L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037147">
        <property type="entry name" value="Ribo_L28/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001383">
        <property type="entry name" value="Ribosomal_L28"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00830">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00009">
        <property type="entry name" value="L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="7006" checksum="B4B0692AB0124AFA" modified="2013-07-24" version="1">MAKCDFCGKDVSFGIKVSHSHRRSNRTWKPNIKRVKAVVNGTPKRVYACTRCLRSGKVTRAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5M6</accession>
    <name>R6Y5M6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-deoxy-7-phosphoheptulonate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01082</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000130">
        <property type="protein sequence ID" value="CDD29185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29185">
        <property type="protein sequence ID" value="CDD29185"/>
        <property type="gene ID" value="BN815_01082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041071">
        <property type="entry name" value="DAHP_snth_FXD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006268">
        <property type="entry name" value="DAHP_syn_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18152">
        <property type="entry name" value="DAHP_snth_FXD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01361">
        <property type="entry name" value="DAHP_synth_Bsub"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAHP_snth_FXD" evidence="2">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="DAHP_synth_1" evidence="1">
        <location>
            <begin position="92"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="337" mass="36538" checksum="7F00B793C9A40077" modified="2013-07-24" version="1">MIIVLKPHQKQEVVDEFIQKLTGQYGVQVNTWVGTHSTVLGLIGDTTPIDAEYIEAQDFVESVKRVQEPYKKANRKFHPDDTVITLPGGQKIGGGGLALIAGPCSVESEEQICGIAESVKKSGAQFLRGGAFKPRTSPYSFQGMKAEGLELLSEAKKKTGLPIVTEIMSIEHLPLFEDVDIIQVGARNMQNFELLKQLGRLNKPILLKRGLANTIEELLMSAEYIMAGGNEQVILCERGIRTYETFTRNTLDISAVPVIKKLSHLPVIVDPSHASGINWLIEPLALAAAAIGADGLIIEVHNDPSHALCDGAQSITPAQFDALAKKVSQVSGLVRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Q9</accession>
    <name>R6Y5Q9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetylmuramoyl-L-alanine amidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00216</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31278">
        <property type="protein sequence ID" value="CDD31278"/>
        <property type="gene ID" value="BN815_00216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="1">
        <location>
            <begin position="24"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="313" mass="33718" checksum="CFCBFC832B124A64" modified="2013-07-24" version="1">MAYTNSSLVSYTKLSPNHSGQRTHSIDRITPHCVVGQLTAESICGCFTSPSREASCNYGIGKDGKIALCVEEKNRSWCSSSNANDQRAVTIECASDLNHPYAMTNAVYNSLVKLCTDICKRNGKKKLLWLGDKNKTLNYSPKSDEMVLTVHRWFANKSCPGDWLYSRLGDLASKVTAALGGSSSGTAGSVLYRVRKSWSDAKSQKGAFNNLDNAKRCADSNAGYSVYDESGKVVYTGKQTGSGSSTGSFLVQVTATDLNIRKGPGTNYAKTGKYTGKGVFTITEMKSGTGSTTGWGKLKSGAGWISLDYCKRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5W5</accession>
    <name>R6Y5W5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4368 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00273</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000404">
        <property type="protein sequence ID" value="CDD31338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31338">
        <property type="protein sequence ID" value="CDD31338"/>
        <property type="gene ID" value="BN815_00273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025378">
        <property type="entry name" value="DUF4368"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14287">
        <property type="entry name" value="DUF4368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4368" evidence="2">
        <location>
            <begin position="45"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="15"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="16886" checksum="582A2085FD9B8462" modified="2013-07-24" version="1">MLIKKLYETYAMGKLEEKRFELLCAEYEKEQAELEQLLASEQAQLDQFLEDTDRASHFLALAQKYTDFTELTAPMIHEFVEKILIHAPDRSTGERVQEIKIYLNFIGKFEVPMPEPTEEELAAEEKCRQIWRSRSRRKAGSAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8E7</accession>
    <name>R6Y8E7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00646</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27529">
        <property type="protein sequence ID" value="CDD27529"/>
        <property type="gene ID" value="BN815_00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025378">
        <property type="entry name" value="DUF4368"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14287">
        <property type="entry name" value="DUF4368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4368" evidence="1">
        <location>
            <begin position="54"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="12110" checksum="F9D5E268D19E9F38" modified="2013-07-24" version="1">MKDRLYLFQCYPQITTTLTFAEYTDDSRTATKEVTPGLSEVMMLAGAKTPTEYAIEEIDPYMLRELIQAIYVEAPDKSSGKRRQNIHIKYDGIGFIPLEELMKHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y976</accession>
    <name>R6Y976_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01682</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000249">
        <property type="protein sequence ID" value="CDD30465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30465">
        <property type="protein sequence ID" value="CDD30465"/>
        <property type="gene ID" value="BN815_01682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="193" mass="21684" checksum="AA15BCE03A0B5FC2" modified="2013-07-24" version="1">MEPCFFGFADGESLSTLCFGALPRHYVVRALLDSYREDHIYNRAFLPLAERLRDFLITRFGFQMNGRRQTREGVTVHLPSVLCYDFHDGENCCKGNLPAPEGFEVVSGPALELWSQRLLENWNLYKAERQRKAPAGKAPPKAVGGFTQAQLEAEGRRVAQLYESSTSWKVTKPLRALAGLWKGKAGHAGQPEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y997</accession>
    <name>R6Y997_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">RNA polymerase sigma factor sigma-70 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01701</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000260">
        <property type="protein sequence ID" value="CDD30485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30485">
        <property type="protein sequence ID" value="CDD30485"/>
        <property type="gene ID" value="BN815_01701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="5">
        <location>
            <begin position="25"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="23386" checksum="1D12A33356D12999" modified="2013-07-24" version="1">MVEENIGLAHLCARRFLGRGMEYDDLFQAGCVGLLKAVENFDTSRGVKFSTYAVPVILGEIRRLFRDGGALRVSRGLRDLSRKALEEADKLRQETGESPGVAQIAQRLGVPVEKAALALGVGQAPMSLTDGEEGGDLDIPVEAPEERMTERLTLYQILHTLEERDQKLIRCRYFQGKTQSQTAAELGMTQVQVSRREKKLLAYMRAAFDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Q9</accession>
    <name>R6Y9Q9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-eliminating lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01847</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30640">
        <property type="protein sequence ID" value="CDD30640"/>
        <property type="gene ID" value="BN815_01847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_elim_lyase" evidence="3">
        <location>
            <begin position="13"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="349" mass="38598" checksum="15FE707CA82EB07A" modified="2013-07-24" version="1">MLYFNCDYTEGAHPRVLEKMLETNLEQTVGYGEDPYCEAARELIRRECQRQDVDVQFLVGGTQTNFTVIRAALRPYQGVLSPATGHINGHETGAVEATGHKVLALPTGPEGKLTAAQVEEAVRAHWADEAREHLVQPKMVYISHPTENGALYTLAELEALSETCKELGLYLFLDGARLGYGLTARGSDVSLGDLARLCDVFYIGGTKCGALLGEAVVIANPDLQRDFRYSIKQNGGMLAKGRLLGLQFLALFEDDLYYDICRAANEQAYRIAAACKEAGFPFFTASPTNQQFPIFPNRLLAKLREKYAVSIWAKVDEEHTAIRLCTSWATREEAVDQLLGDIRALGKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA54</accession>
    <name>R6YA54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Putative rod shape-determining protein MreD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02004</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MreD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30800">
        <property type="protein sequence ID" value="CDD30800"/>
        <property type="gene ID" value="BN815_02004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007227">
        <property type="entry name" value="Cell_shape_determining_MreD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04093">
        <property type="entry name" value="MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03426">
        <property type="entry name" value="shape_MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="19766" checksum="6E50FF9C40FAB401" modified="2013-07-24" version="1">MRVEWNKVIRYLAYTLELLVLFMLQETPGLLPPLFGARPVLLFPAVITIAMFETEIPALAFGVVGGLFCDFGLSGTLGFHALVLGVLCFFISLLVRVYLQSNIATALLTGIVGIGLTVCLQWFFLYFFRYSHPSYAFTHHYLPKYLYTLLFLPLVYFLNRGLSQALRPQEESRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA95</accession>
    <name>R6YA95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SpoIVB peptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28194">
        <property type="protein sequence ID" value="CDD28194"/>
        <property type="gene ID" value="BN815_00780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014219">
        <property type="entry name" value="Pept_S55_SpoIVB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008763">
        <property type="entry name" value="Peptidase_S55"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05580">
        <property type="entry name" value="Peptidase_S55"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02860">
        <property type="entry name" value="spore_IV_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51494">
        <property type="entry name" value="SPOIVB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase S55" evidence="1">
        <location>
            <begin position="155"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="39636" checksum="1B170B4D6AD808DF" modified="2013-07-24" version="1">MKAFWKQWNKGAAAKAVKLFALSVGATALCMLGCLGFLSEGKEPSALEASIFNGGKEFSHQEDSAAAAAAQDTSRQVIPLGSAFGIKLFTDGVIVASLSDIYTEEGVCCPAAEAGILPGDYLLQADGQDIPDNGALARYIGSSQGEAISFQVRREDQVFSVEVTPVYGEGSFKTGMWVRDSAAGIGTLTFYDPATGVFAGLGHGICDMDTNGVMALKSGEPAPITLSGIVKGQADSPGQLRGYFSSEESLGTLLANRETGVYGTLHQAPAGEAVETLTREEVATGPVQLLVSLDETRPQLYEAEIQEIINRDKTTKNLVVQVTDPRLLERTGGIVQGMSGAPILQNGKLAGAITHVFTEDPTLGYGIFISNMLEGMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAC3</accession>
    <name>R6YAC3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Pyruvate formate-lyase-activating enzyme</fullName>
            <ecNumber evidence="11">1.97.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_00178</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>glycyl-[formate C-acetyltransferase] + reduced [flavodoxin] + S-adenosyl-L-methionine = 5'-deoxyadenosine + glycin-2-yl radical-[formate C-acetyltransferase] + H(+) + L-methionine + semiquinone [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:19225"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12190"/>
            <dbReference type="Rhea" id="RHEA-COMP:12191"/>
            <dbReference type="Rhea" id="RHEA-COMP:14480"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29947"/>
            <dbReference type="ChEBI" id="CHEBI:32722"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:140311"/>
            <dbReference type="EC" id="1.97.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="11">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the organic radical-activating enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.97.1.4" evidence="11"/>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30875">
        <property type="protein sequence ID" value="CDD30875"/>
        <property type="gene ID" value="BN815_00178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043365">
        <property type="term" value="F:[formate-C-acetyltransferase]-activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012838">
        <property type="entry name" value="PFL1_activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001989">
        <property type="entry name" value="Radical_activat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PTHR30352"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02493">
        <property type="entry name" value="PFLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01087">
        <property type="entry name" value="RADICAL_ACTIVATING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-0408">Iron</keyword>
    <keyword evidence="10 11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="13" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="12">
        <location>
            <begin position="14"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="26036" checksum="3FF5D5E34D83FE9B" modified="2013-07-24" version="1">MKGRVHSIQSLGAVDGPGVRYVVFLQGCPLRCAYCHNPDTWDFSGGQEREAAELVQEICRYKMYFGDKGGVTVSGGEPLLQPAFVGELFRLLHGEGIHTALDTSGVWADWDGACQVLEHTDLILGDLKFATPEEYRLHCKADMEKPLAFYRLAEERGIPLWVRHVVVPGLNDSLEDMGKIKVLAESFSNLEKIEWLPFHNLCVEKYQSLGIPFPLAGTDNMDEEALQRLVDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAT4</accession>
    <name>R6YAT4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP synthase subunit beta</fullName>
            <ecNumber evidence="10">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">atpD</name>
        <name evidence="12" type="ORF">BN815_02159</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD31000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31000">
        <property type="protein sequence ID" value="CDD31000"/>
        <property type="gene ID" value="BN815_02159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0139">CF(1)</keyword>
    <keyword evidence="10" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="6 10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="144"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="152"/>
            <end position="159"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="464" mass="50328" checksum="D4F9CB7052FE2C92" modified="2013-07-24" version="1">MEGNQGKVLQVLGPVVDVQFESGKLPKIYDALTVENGGETQVLEVLKHLGDGAVRCITLATSEGLTRGMAVTATGGPIRVPVGEGTLGRMFNVLGDTIDDKGPADCKEKWPIHRDPPGFAQQSAAVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELIRNIATEHGGYSIFTGVGERTREGNDLWREMTESGVIEKTALVFGQMNEPPGARMRVALTGLTMAEYFRDHEHQNVLLFIDNIFRYVQAGSEVSALMGRLPSAVGYQPTLANEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIVEQGIYPAVDPLESTSRSLEPDVVGQRHYDVARATQEVLQRYRELQDIIAILGMEELSDGDKLTVSRARKIQRFFSQPFFVAQAFTGKEGRYVPVAETIKGFEAILGGELDNVSEVCFNNMGTIDEVWQKSKEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBG9</accession>
    <name>R6YBG9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02413</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31270">
        <property type="protein sequence ID" value="CDD31270"/>
        <property type="gene ID" value="BN815_02413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015956">
        <property type="entry name" value="Peniciliin-bd_prot_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012907">
        <property type="entry name" value="Peptidase_S11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037167">
        <property type="entry name" value="Peptidase_S11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07943">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69189">
        <property type="entry name" value="SSF69189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S11" evidence="3">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="PBP5_C" evidence="4">
        <location>
            <begin position="177"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="28119" checksum="539108BEAFC03020" modified="2013-07-24" version="1">MLLASGNDAANAAALYLDASLESFAARMNQRAAVLGMEDTHFVTPSGLDGEDAQGLGHLSTAYDMALLARAALEDQAFRQLCSSPSLAVEFAEPVKRVTYTNHNKLLAQYQGCVGVKTGFTKEAGRCLVSAAERDGALLIAVTLNAPNDWEDHTALLDYGFSQVEPYQLAGGDVRLTVPVVGSPVEVMSLRGSNGGEVTLPLGQGAQVERVVHAPKFLYAPVEAGEQVGEICWYLEGQLLGSAPLTAAGAAPLQEKAPSLWERLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBH1</accession>
    <name>R6YBH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28579">
        <property type="protein sequence ID" value="CDD28579"/>
        <property type="gene ID" value="BN815_00882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="325"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="368"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="396"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="427"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="49528" checksum="97DF5BF9BE52ED4B" modified="2013-07-24" version="1">MNLLAKLKGGRGSYEIDMTHGPLLGKIVRFAIPLAISGILQLLFNAADIIVVGQFVGPQALAAVGSTSALINLIVNLFIGLSVGANVLVAQYYGASDTKALRETVHTSVLASLIFGCIVLVIGITLAAPMLELMGTPEEVLDQACLYMRIYFIGMPASMLYNFGAAILRAVGDTQRPLYFLLIAGIVNVLLNLFCVIVLHMGVEGVAIPTVISQCVSAGLVLLCLVKAHAPYHVDLHALRLKKDKLLGMVKIGLPAGIQGCSFSISNVLIQSSINSFGALAMAGNTAASNIEGFVSTAQDAFSQAALSFTGQNVGAGQTKRVNRILPLCAALVLGVGLALGSGAYLLGNQLLSIYSSDPEVIAFGMKRMAICCVLQCVGGLMGVMVGTLRGMGYSFVPMAITIGFVCGFRVIWIFTIFVQWHTLESLYVSYPITWGLAALCDLICFFFVRKHLTRKQRLARERAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCJ1</accession>
    <name>R6YCJ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nitroreductase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00417</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31600">
        <property type="protein sequence ID" value="CDD31600"/>
        <property type="gene ID" value="BN815_00417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="21676" checksum="8C61A3D64EC385E8" modified="2013-07-24" version="1">MNVLEAIRGRRSIRKYQDRQIPRENLEKILEAGSFAPNAGGGQRAILVGVHNRELTSRLGRQNLAKFDRSRLAGNFVSKEQPSTIDDPTIQNGFYGAPTVCVVFGPENFLYSVPDAFCCAENMVLAAYELGISSCVIARAEETFESPLGAHLMEEWGIPRHYKARCFVALGYVEGDYPPEKPRKDGRVKLVGEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDD0</accession>
    <name>R6YDD0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helicase-exonuclease AddAB AddA subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01114</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29289">
        <property type="protein sequence ID" value="CDD29289"/>
        <property type="gene ID" value="BN815_01114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDDEXK_1" evidence="1">
        <location>
            <begin position="32"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="206" mass="22980" checksum="9B317E9846A8C524" modified="2013-07-24" version="1">MGIPAKVAASKLAAEQDGSRDITLSRPAWLGEQGMTPAERGTALHAFMQFADFAAARRDLEKERDRLVAQALLTPEQGAVVDLRRVRRFLESPLGQRVLRSPQVEKERRFTAVIPAALARPGAASGEEVILQGAVDCTFVEDGRLHIIDFKTDRVQTMEELWQRYQAQLQLYGYAMEEVSGLPVGQLVLYSTWLGQASARDYEKSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF79</accession>
    <name>R6YF79_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Single-stranded-DNA-specific exonuclease RecJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00559</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RecJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27256">
        <property type="protein sequence ID" value="CDD27256"/>
        <property type="gene ID" value="BN815_00559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008409">
        <property type="term" value="F:5'-3' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004610">
        <property type="entry name" value="RecJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041122">
        <property type="entry name" value="RecJ_OB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17768">
        <property type="entry name" value="RecJ_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00644">
        <property type="entry name" value="recJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHH" evidence="6">
        <location>
            <begin position="78"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="7">
        <location>
            <begin position="318"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="RecJ_OB" evidence="8">
        <location>
            <begin position="452"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="683" mass="74126" checksum="B13557F9E2B824AF" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFT7</accession>
    <name>R6YFT7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01442</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30199">
        <property type="protein sequence ID" value="CDD30199"/>
        <property type="gene ID" value="BN815_01442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027785">
        <property type="entry name" value="UvrD-like_helicase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13538">
        <property type="entry name" value="UvrD_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="7">
        <location>
            <begin position="205"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="16"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="226"/>
            <end position="233"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="691" mass="79756" checksum="B7573BFC245D17E4" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFW2</accession>
    <name>R6YFW2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00635</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000044">
        <property type="protein sequence ID" value="CDD27461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27461">
        <property type="protein sequence ID" value="CDD27461"/>
        <property type="gene ID" value="BN815_00635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005361">
        <property type="entry name" value="UPF0158"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03682">
        <property type="entry name" value="UPF0158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16825" checksum="3192BD7527B0E520" modified="2013-07-24" version="1">MVMKIPLQQVIEAIEMADDAFTAFWDSKTGETVYLDDGLISGMRNEELENLLETESERFYRFPSKWDIHEYSIMEDFIDSLTPGGIQDELAWAIRGSGAFRRFKDKLYFFGIEQQWYDFRDNAFRELAIRWCRDNELEYTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFW7</accession>
    <name>R6YFW7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-keto-3-deoxygluconate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00640</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27466">
        <property type="protein sequence ID" value="CDD27466"/>
        <property type="gene ID" value="BN815_00640"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="15"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="33302" checksum="918FE1EB7845E753" modified="2013-07-24" version="1">MKIILMGEPMGLFMANETGSLSEVNTFTASIAGAEYNVAVGLARLGHTPAYCTRLGFDPLGERILNGMRKNAIATDLVMQTESAQTGFMMKGFTQKGDPDIAYYRKGSAASQISTHDIDGLDLSGCEWLHVTGIFPAVSPSALAATKRLISRAKALELPISFDPNLRPQLWESQEKMVATLNDLAQGVETILPGIGEGKILTGQDTPEGVAAFYHQRGVKNVVVKTGKEGAYFSQLGGKAGYSPAFPVKEKVDTVGAGDGFAAGVISALAEGESLEEATFRGNVIGAIQITYRSDNEGLPTRERLSQIILAGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG26</accession>
    <name>R6YG26_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30304">
        <property type="protein sequence ID" value="CDD30304"/>
        <property type="gene ID" value="BN815_01538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="100" mass="11055" checksum="E8A5A416677E24D5" modified="2013-07-24" version="1">MTRGEFEQAAYLGEELAALAARPGESARARQLRQLLEEAQALPSRLPDPKARLVAQKVLEHGAPIPWKQIVAELGHRWTVGKARYAYARVCALCFAGEET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGC5</accession>
    <name>R6YGC5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleotide-binding protein BN815_01635</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Displays ATPase and GTPase activities.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RapZ-like family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30414">
        <property type="protein sequence ID" value="CDD30414"/>
        <property type="gene ID" value="BN815_01635"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00636">
        <property type="entry name" value="RapZ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005337">
        <property type="entry name" value="RapZ-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30448">
        <property type="entry name" value="PTHR30448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03668">
        <property type="entry name" value="ATP_bind_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005052">
        <property type="entry name" value="P-loopkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="8"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="59"/>
            <end position="62"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="31968" checksum="496E5DAE12B441CB" modified="2013-07-24" version="1">MEFVILTGLSGAGKTRAMHAMEDIGFFCVDNLPPALIPVFYDLCLKTEGTQNRAAVVTDTRGGELFKSFFTALESLKRDKKPYKILFLDSSDSVLVNRFQETRRKHPLSDEMGGALEQAVKLEREMLKPVKECSDYVIDTSGVSPAQLKARITELFLSSAQDSLSVHCISFGFKFGIPMEADLVFDVRCLPNPFYDEALRPLTGLDAPVRDYVMEKEETQGFVSRFTDLIDYLLPLYSKEGKSQLVIAVGCTGGHHRSVALAQYMCDHLTEKGVKASVTHRDMQKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGJ5</accession>
    <name>R6YGJ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative stage III sporulation protein AD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000056">
        <property type="protein sequence ID" value="CDD27686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27686">
        <property type="protein sequence ID" value="CDD27686"/>
        <property type="gene ID" value="BN815_00700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025664">
        <property type="entry name" value="Spore_III_AC/AD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06686">
        <property type="entry name" value="SpoIIIAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="13247" checksum="F29DD668ADBE20D3" modified="2013-07-24" version="1">MELFAIGICALCAVLFAALVQKTNKEYALLISLGTAAVLLLFLLERAGPVLQQVEDLAASGPLEGEAVGLMLRAVGITVVGQVVARLCKDAGESALAYTVELAARAAVLAAALPALGRLLKYLGEIAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH19</accession>
    <name>R6YH19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cell division protein FtsW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01866</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000295">
        <property type="protein sequence ID" value="CDD30659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30659">
        <property type="protein sequence ID" value="CDD30659"/>
        <property type="gene ID" value="BN815_01866"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013437">
        <property type="entry name" value="FtsW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02614">
        <property type="entry name" value="ftsW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="9" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="44"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="152"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="188"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="213"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="236"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="316"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="355"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="392"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="421" mass="46642" checksum="1ED03ED384BD550D" modified="2013-07-24" version="1">MAAIGRTARGLRRIPGYRQPEPPRPRRQQPAEGAPKRRPMRYKLFSLGAGLDMPLLIFILVLLAIGLVMLFSASYANSYYLQGNSYYYISRQAVFAVFGVAAMLLISTFDYHSFHKLAIVIFGVSLFLLVFLLICRYAHIESIANWEGDATRWLNFGFVSFQPSEIAKFALIVLFAHMISRNLDRMDTFRYGVVPYVAIMGLVAALIFLESHLSATLIILALGAIMMFVGGTKPRWFLIGGVLVAAVLLFVVVTKGGYQMDRIRIWLDPFSSDLDRDLTHQTRQSLYAIGSGGLLGVGLGQSRQKYLYLPAPQNDFIFAIVCEELGFVGALVIIVLFALLIWRGVYVSIHARDKFGMLLGLGITFQVGLQAVLNICVVTNTIPNTGISLPFFSYGGTALLMLLGQMGILLNISRSANVEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHQ8</accession>
    <name>R6YHQ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3343 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00747</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28056">
        <property type="protein sequence ID" value="CDD28056"/>
        <property type="gene ID" value="BN815_00747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021778">
        <property type="entry name" value="Se/S_carrier-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11823">
        <property type="entry name" value="DUF3343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3343" evidence="1">
        <location>
            <begin position="5"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8661" checksum="F4486C33368154B9" modified="2013-07-24" version="1">MGKPLLVVSSVTYAMKGRDLLFRHGIRGYVERIPRTEETGCGYGIYVPQGADAAERILWENHIRVLRRMEQDGETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHU6</accession>
    <name>R6YHU6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Elongation factor G</fullName>
            <shortName evidence="7">EF-G</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">fusA</name>
        <name evidence="10" type="ORF">BN815_00770</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000078">
        <property type="protein sequence ID" value="CDD28121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28121">
        <property type="protein sequence ID" value="CDD28121"/>
        <property type="gene ID" value="BN815_00770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00054_B">
        <property type="entry name" value="EF_G_EF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004540">
        <property type="entry name" value="Transl_elong_EFG/EF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00484">
        <property type="entry name" value="EF-G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="8"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="287"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="140"/>
            <end position="143"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="698" mass="77644" checksum="FA0C19B47A556C38" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI09</accession>
    <name>R6YI09_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific recombinase phage integrase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02178</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31024">
        <property type="protein sequence ID" value="CDD31024"/>
        <property type="gene ID" value="BN815_02178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="191" mass="21814" checksum="75CBBC40953D609B" modified="2013-07-24" version="1">MVFAVFRLNLCKTAWRGDGEKNWHSDIDLEHRVLHLERGVKEVWRRDGLQAEPGRDVKVGKLKSATSKRTVPLNDTAIAMIKDLRQEAYFGEDTPLVPDEHGNFTRPVNFRKRYYRILAAAEIEKKGLHSLRHTFASSLVNGIKQEDGSIKSLTPRQVADLLGHSTSQITELYYVKKDTSRLHCITDGFNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI38</accession>
    <name>R6YI38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000368">
        <property type="protein sequence ID" value="CDD31059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31059">
        <property type="protein sequence ID" value="CDD31059"/>
        <property type="gene ID" value="BN815_00198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="160" mass="17758" checksum="6AC262200227E477" modified="2013-07-24" version="1">MVHLEKVNGENIWDILKLSVSESQKNFVASNEVSILEAYAAIASNGYAFPFGVFDGDAPVGFVMVGYGKDDCWKDAPAIAEGNYNLWRLMIDESCQNRGYGRQAVELALNFIRTYPCGKANFCWLSYEPENTVAKSLYASFGFVETGEKDGEEQIAVLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI91</accession>
    <name>R6YI91_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine repressor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">argR</name>
        <name evidence="10" type="ORF">BN815_02267</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Regulates arginine biosynthesis genes.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis [regulation].</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31114">
        <property type="protein sequence ID" value="CDD31114"/>
        <property type="gene ID" value="BN815_02267"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034618">
        <property type="term" value="F:arginine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051259">
        <property type="term" value="P:protein complex oligomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00173">
        <property type="entry name" value="Arg_repressor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001669">
        <property type="entry name" value="Arg_repress"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020899">
        <property type="entry name" value="Arg_repress_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036251">
        <property type="entry name" value="Arg_repress_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020900">
        <property type="entry name" value="Arg_repress_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34471">
        <property type="entry name" value="PTHR34471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01316">
        <property type="entry name" value="Arg_repressor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02863">
        <property type="entry name" value="Arg_repressor_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01467">
        <property type="entry name" value="ARGREPRESSOR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55252">
        <property type="entry name" value="SSF55252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01529">
        <property type="entry name" value="argR_whole"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Arg_repressor" evidence="8">
        <location>
            <begin position="2"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Arg_repressor_C" evidence="9">
        <location>
            <begin position="79"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="17033" checksum="EE2F25CFE40F2E6C" modified="2013-07-24" version="1">MKTRRHAKILELIKEHDIDTQDELLRYLRESGFDVTQATVSRDIKELRLVKTLSRAGKYRYSTGSENISDMSSKFYSLFGDSVLSVESAQNMLVIRCMVGMAQAVCASLDSMHWPAFVGTLAGDDTIFIVCRTEADAQESQEEFRKLINR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIA1</accession>
    <name>R6YIA1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA repair protein RecN</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Recombination protein N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02268</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RecN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31124">
        <property type="protein sequence ID" value="CDD31124"/>
        <property type="gene ID" value="BN815_02268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004604">
        <property type="entry name" value="DNA_recomb/repair_RecN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11059">
        <property type="entry name" value="PTHR11059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00033408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="38621" checksum="FE11E8D35A542B75" modified="2013-07-24" version="1">MRVGEREELEAQRELIRNSEKIASALELLRGLLSGDEESEGLLAGISQAAAQAGRVAAYLPELAEASQKLQEAGYLLEDVDAILHGTAVDFDPALQESIEERLDLLYKLGLKYGGSEEKILEYLEDCRTRLHQIEFSDEERERLEAQYETQKTATIALAKGLSEQRKAASKQFISQVKGELAFLNMPGIAFETEIQRVPLYHMGCDKLQFLVSANKGEPPKPMSKIASGGELSRIMLAIKTVLSGKDKVDTLIFDEVDTGISGAAANKVGQKLKQVSQNRQVLCITHLAQIAALADHHFLISKHVEGERTYTQVQGLDFEGRKREVARIIGGDQVTDLQLEMAGEMLKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YID4</accession>
    <name>R6YID4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tyrosine recombinase XerD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02303</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31159">
        <property type="protein sequence ID" value="CDD31159"/>
        <property type="gene ID" value="BN815_02303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="2"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="108"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="299" mass="33355" checksum="2BF8AF588F9D1C7B" modified="2013-07-24" version="1">MSGTSDYYSLFSDYLTNQKANSANTRESYLRDALYFLEYLSNAGIDPLEADEQVIQGYVEHLHDLKRSPTTISRNLASVRCFYKFLIFRGLMDSNPAKGIKLEKTVKKLPQVLSGEEIELLLAQPDITEPKGCRDKAMLELLYATGIRASELINLNIQDLNLRSGVLYCRGSKGVRSIPVYPSAVVAVSDYIYRMRGLITGPESGNALFVNLNGGRLTRQGFWKIVKGYATEAGITKEITPHTLRHSFALHLLENGASVKDIQTMMGHADISSTQVYVQLLDSHVKQVYNDCHPKAKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIY0</accession>
    <name>R6YIY0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="6">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsaD</name>
        <name evidence="8" type="ORF">BN815_00310</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="6">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31379">
        <property type="protein sequence ID" value="CDD31379"/>
        <property type="gene ID" value="BN815_00310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01445">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022450">
        <property type="entry name" value="TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF6">
        <property type="entry name" value="PTHR11735:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03723">
        <property type="entry name" value="T6A_TsaD_YgjD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="7">
        <location>
            <begin position="23"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="134"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="334" mass="35588" checksum="CBCF12BD2A57AB47" modified="2013-07-24" version="1">MIVLGIESSCDETAAALVEDGRKILSSVVASQVEEHKIYGGVVPEIASRRHSEAIVAVVQEALERGRKKLSQVDAIAVTYAPGLIGALLVGVNFAKGLSLATGLPLVPVHHLRGHIASGYLSDARLEPPFLCLVASGGHSHIVQVEDYTKLKILGRTRDDAAGEAFDKAARAMGIPYPGGVEMDRIAEEGDPNAYKLPHPHVEGAPLDFSFSGLKTAVLNLLNNARQKGEEISVPDLCASYRKAVVSCLTENFFKAAEMTGAKTLAAAGGVSANRLLRRELERLARERGLKVYLPDKPLCGDNAAMIASQGYYEYLAGNTAGMDLNACAQRSIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJT4</accession>
    <name>R6YJT4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28816">
        <property type="protein sequence ID" value="CDD28816"/>
        <property type="gene ID" value="BN815_00967"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="124" mass="13598" checksum="76389125B731DEFD" modified="2013-07-24" version="1">MRMVGSVVFLPVKDLARTRAFYTQVIGLRLAMVQPAGAEIYDTGYGYWGFCAYGDGRPALGGGNGVCLSLNCKDREEVEARWRKAVALGAQAVSPPAEHARFPVYSCFVEDPDGYRVEFQVVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJV4</accession>
    <name>R6YJV4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_C39_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00978</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28836">
        <property type="protein sequence ID" value="CDD28836"/>
        <property type="gene ID" value="BN815_00978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039564">
        <property type="entry name" value="Peptidase_C39-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13529">
        <property type="entry name" value="Peptidase_C39_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_C39_2" evidence="2">
        <location>
            <begin position="71"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="30216" checksum="D62C1D1284FEB93B" modified="2013-07-24" version="1">MERTMQTTRRYKRTRQPRRIVLLWLVCLFAAVSFGVLLAISPAAKALLRSEGGPAPAVAPVEGREMPGVIDAPFIDQRDKYPTGCESVTAVMALQYAGVDITVEEFIDNYLPQGNAPYTREDGTLVGADPWKVFLGSPYEESGWGCYAPVITEALEQLLQDRGLEGLSVQELEGESLDKLCREYIDAGTPVLLWATIAMEAPVESTQFFLEDSGQLFTWLYPLHCLLLTGEDKDCYYFNDPLEGKNVAYPKEQVEAAYEGIGMQAVVLEGSVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKV7</accession>
    <name>R6YKV7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain-containing protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01094</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29221">
        <property type="protein sequence ID" value="CDD29221"/>
        <property type="gene ID" value="BN815_01094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="23"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="27743" checksum="7E472D8728B36967" modified="2013-07-24" version="1">MAQVKTGLVSVTFRQKSVEEIAALTAEAGLSGVEWGGDVHVPPGAREAARRAAQLTRQAGLEVLSYGSYYRCQPGEDFTPVLESALALGAPRIRVWAGTKPWEEASPQEREALAAQLGQAVDQAAAAGLALGLEYHRGTATQTKEGARALLEAVGRPGLTTYWQPNPDISQGKQLAEIDALLPWISTVHVFTWTGANVRHPLETGAARWEEYLTHLAPAQKERCLLLEFVQEDSEEAFRRDARTLRAWASRFSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM05</accession>
    <name>R6YM05_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29596">
        <property type="protein sequence ID" value="CDD29596"/>
        <property type="gene ID" value="BN815_01200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="8710" checksum="47B7E5EF1031756E" modified="2013-07-24" version="1">MKLKQDDSLGPNLQKLRKTAGLTQTQVAAQLQVRGLDVSREMYAQMEAGTYNIRVSILKALKEIYKLDSYDAFFQGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM08</accession>
    <name>R6YM08_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">30S ribosomal protein S9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01204</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uS9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29601">
        <property type="protein sequence ID" value="CDD29601"/>
        <property type="gene ID" value="BN815_01204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000754">
        <property type="entry name" value="Ribosomal_S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020574">
        <property type="entry name" value="Ribosomal_S9_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21569">
        <property type="entry name" value="PTHR21569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00380">
        <property type="entry name" value="Ribosomal_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00360">
        <property type="entry name" value="RIBOSOMAL_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12738" checksum="9A695D0F506F62E7" modified="2013-07-24" version="1">MRLYQGTGKVTINDRDIDDYFGLDTLKYIVRQPLALTGTDEKFDIVCRVSGGGVTGQAGAIRHGVARALLQYDSENLRSMLKKAGFLTRDPRMKERKKYGLKAARRAPQFSKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM52</accession>
    <name>R6YM52_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29681">
        <property type="protein sequence ID" value="CDD29681"/>
        <property type="gene ID" value="BN815_01221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="379" mass="42337" checksum="C72E06E4AB2D576B" modified="2013-07-24" version="1">MQTCQDNYSTVFSSFGEMQTYHQRLSQESQWRRCCVRDLTVEPLDSKSPLAEDLPAFAPGTSQEAVRDTVRGLGLAMRVEGNLYPMRDTAYKSLLDRAKLRGSVLPKLSRPKLARTLNDCLHVFTSDALVLIRDEKVAAAHSGEPADYAVLPADELLEVLQAKLDSRFPGNQFETGYWDHTLTRAIWTLPGQKEELLRTYQQELAARGKTGVESRLTPAVQFLTSDIGVSSAKVIALLEGGKTPIHIGSCVAVDHRCWAKVEDFDKSLDQLFAQFQDSVGKLQKLLNVYLDYPVNAMTRVCKKLNLPKKAALEAIHQFEVTYGGCPATAHDVFLAMQEIPFFLSCDHAPESKLLAVAESMARALTFRWEDYDLAKGVEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YN29</accession>
    <name>R6YN29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000186">
        <property type="protein sequence ID" value="CDD29991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29991">
        <property type="protein sequence ID" value="CDD29991"/>
        <property type="gene ID" value="BN815_01331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023353">
        <property type="entry name" value="LemA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140478">
        <property type="entry name" value="SSF140478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425669" evidence="1">
        <location>
            <begin position="27"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="20387" checksum="588300DE454DF390" modified="2013-07-24" version="1">MKKSSVIGACVLAAAVVLSVPLGVHTSLTSLREEANSSYYYDKTGFAIWEGIENREAAASNMITVAERYTDDNPALTGLVGDLEYAVEYSQNCWDGDEGMAEANQMMGQAAQALYEELKNTQLSETDQKYPDQLIAQMESEQDKINRSSYNEDAREFNARLEKFPVNLLRGVAGVEPLATFDYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YN88</accession>
    <name>R6YN88_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01354</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000189">
        <property type="protein sequence ID" value="CDD30031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30031">
        <property type="protein sequence ID" value="CDD30031"/>
        <property type="gene ID" value="BN815_01354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028348">
        <property type="entry name" value="FAD-binding_protein"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42842">
        <property type="entry name" value="PTHR42842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038984">
        <property type="entry name" value="FAD_binding_protein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="530" mass="56089" checksum="FA5E8A2459CA6ACE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNF8</accession>
    <name>R6YNF8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01384</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30126">
        <property type="protein sequence ID" value="CDD30126"/>
        <property type="gene ID" value="BN815_01384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S" evidence="5">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="22399" checksum="8831523A0EC08FEE" modified="2013-07-24" version="1">MRRACGYNTCREKAIAVYQGKADINMCLPFLTQKAESFSDTIISTSPNGIMVLNEDLEVQQINSAACRIMNIRHASDVLGDQVIRILDPKVFLDVMSTGKSVRDEKAYLAEYKRYVEQTVIYDKSYHIIICLMRDVTEEERERMDKEKISQQTIEMTDRVIEKQMRMAQEIASLLGETTAETKIALTKLKDSLGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNK1</accession>
    <name>R6YNK1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative efflux protein MATE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01429</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30186">
        <property type="protein sequence ID" value="CDD30186"/>
        <property type="gene ID" value="BN815_01429"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="17515" checksum="832DB24CB3B7576F" modified="2013-07-24" version="1">MAVAGTTLVGQAIGAGRKDLAQRFARTVSWMGIVIMTFGGSILFFFAPQLIQIFSTDPDVIDLGSQVLRIVAFAEPLFGASIVASGALRGAGDSKGPFLINLATMWGVRITLSLALVGSLGLIGVWLAMAAELCARGLIFMVRLYRGKWLHIDLFAQKAKGAKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNT8</accession>
    <name>R6YNT8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000216">
        <property type="protein sequence ID" value="CDD30286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30286">
        <property type="protein sequence ID" value="CDD30286"/>
        <property type="gene ID" value="BN815_01520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426102" evidence="2">
        <location>
            <begin position="18"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15982" checksum="172FD2780DD03B2B" modified="2013-07-24" version="1">MKRVKSKYSLILACVMAACTVLFWVVYCFRGQELRFLLSGFVTFAWGVVSVYDAFHKKPIEERVAEHADERDVYLAMKASRTAMGVFNKCLFIASALCFWMYSVYRLEFLLPVAVTLAGAVLFLFLLLLCVNLYYEKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPC7</accession>
    <name>R6YPC7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01662</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl coenzyme A hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000245">
        <property type="protein sequence ID" value="CDD30441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30441">
        <property type="protein sequence ID" value="CDD30441"/>
        <property type="gene ID" value="BN815_01662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040170">
        <property type="entry name" value="Cytosol_ACT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033120">
        <property type="entry name" value="HOTDOG_ACOT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11049">
        <property type="entry name" value="PTHR11049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51770">
        <property type="entry name" value="HOTDOG_ACOT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HotDog ACOT-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="160" mass="18587" checksum="0644BF89829139F9" modified="2013-07-24" version="1">MEKYVRDSYTEQVQILSQSSLNGYKRLFGGRLMEWIDVVAGVVARRHSNRNVTTAAVDNLRFEGPAYGNETIVLCGYITYTGRTSMEVCVRTYVEELNGHKRLINVAYLVMVALDENERPVEVPRLVLATEEERREWEAAVERTRLRKERRRLEKEAGIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPZ6</accession>
    <name>R6YPZ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Small GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01873</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000297">
        <property type="protein sequence ID" value="CDD30666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30666">
        <property type="protein sequence ID" value="CDD30666"/>
        <property type="gene ID" value="BN815_01873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023873">
        <property type="entry name" value="FeFe-hyd_GTPase_HydF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041606">
        <property type="entry name" value="HydF_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040644">
        <property type="entry name" value="HydF_tetramer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18128">
        <property type="entry name" value="HydF_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18133">
        <property type="entry name" value="HydF_tetramer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03918">
        <property type="entry name" value="GTP_HydF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="1">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="HydF_dimer" evidence="2">
        <location>
            <begin position="172"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="HydF_tetramer" evidence="3">
        <location>
            <begin position="274"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="399" mass="43597" checksum="26AB9C3F456212A5" modified="2013-07-24" version="1">MSLNDTPSAERVHIGFFGRRNAGKSSVVNAVTGQELSVVSDVKGTTTDPVLKSMELLPMGPVVIIDTPGFDDEGSLGELRVKKTKQILNRADCAVLVVDATQGLTPADQELIALFQQKSIPYLVAYNKSDLAAAPQLGEKELAVSAVTREGIEELKERIARLTRSQGEDKRLVGDMLTPGDLVVLVTPIDSAAPKGRLILPQQQTIRDVLDADCTAIVVKENTLAPTLEKLAVKPRMVITDSQAFAQVDRDTPKDIPLTSFSILMARYKGFLEDAVRGVAAIDRLQDGDRVLIAEGCTHHRQCEDIGTVKIPRWLGEYTGKNLRLEHSSGRDFPEDLSPYQLVIHCGGCMLNGREMDYRRKTAADAGVPFTNYGITIAHLKGILKRSVELFPDLYALLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ50</accession>
    <name>R6YQ50_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase M23 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01926</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30721">
        <property type="protein sequence ID" value="CDD30721"/>
        <property type="gene ID" value="BN815_01926"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="3">
        <location>
            <begin position="176"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="29604" checksum="85EC1FDBC0DA7BE4" modified="2013-07-24" version="1">MNGKRFSGENARRSGFYLALAVCLVAVGIAAWSTYDAVNSTIAPESTSSQLVSQQASEVRQGQETDAHPEDGEGQQPSATPQASGSAQEESSHSAVNDDPEAPENTASAAQETAGQVEPEPTQQPAESSQQEQVPATAPLYEISTELIWPVEGGEALNAYSAGAPVYSETMKDWRIHTGLDIAAESEAPVLACANGQVKETYTDSMLGNVVLVEHGPYQFYYCGVGENFLVNPGDVVTMGQQLGVVTAVPFEAAEEPHLHLEVRRDGVALDPQAVLEGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ97</accession>
    <name>R6YQ97_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01975</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30771">
        <property type="protein sequence ID" value="CDD30771"/>
        <property type="gene ID" value="BN815_01975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9223" checksum="D8D03AAA82259194" modified="2013-07-24" version="1">MCIDNYNILSNTVLLVEEGLGVAVCLNGDLAIHHSPQLRFVPLVPERSIRGVLIWKKNHVFNPAISLFVQMVQRYGESERY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQV1</accession>
    <name>R6YQV1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30941">
        <property type="protein sequence ID" value="CDD30941"/>
        <property type="gene ID" value="BN815_02100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8165" checksum="4DA7D85C8E6BEA32" modified="2013-07-24" version="1">MKRWAGFGCVLAFLLLCGGAWLFLQPFTFTGGEALPYVDWETTVWVDGDGAEHPLDPWRASRSCRRGRFSASP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR67</accession>
    <name>R6YR67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CMP-N-acetylneuraminic acid synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31026">
        <property type="protein sequence ID" value="CDD31026"/>
        <property type="gene ID" value="BN815_02180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003329">
        <property type="entry name" value="Cytidylyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02348">
        <property type="entry name" value="CTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="25250" checksum="987488C6A27D63BF" modified="2013-07-24" version="1">MKVAAVVPMKLNNRRLPQKNTKPFTNGRPLCWYILSTLLEVEAIEKVYVYCSNPSIQEYLPQGVEYLCRGEDLDQDSTKMNEVLARFAGEVPADVYVMTHTTAPFVRKESIEKGLEAVLSGAYDSAFAVKELRDFLWKDGKPFNYALDAIPRTQDLEPLYQETSGFYIYRQEVITQLGRRIGEKPKLVTVSEVESVDIDEAEDFLIADALYNYGLQLGKGACL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRD4</accession>
    <name>R6YRD4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Ribosome biogenesis GTPase A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02280</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31136">
        <property type="protein sequence ID" value="CDD31136"/>
        <property type="gene ID" value="BN815_02280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030378">
        <property type="entry name" value="G_CP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023179">
        <property type="entry name" value="GTP-bd_ortho_bundle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019991">
        <property type="entry name" value="GTP-bd_ribosome_bgen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016478">
        <property type="entry name" value="GTPase_MTG1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006230">
        <property type="entry name" value="MG442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03596">
        <property type="entry name" value="GTPase_YlqF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51721">
        <property type="entry name" value="G_CP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CP-type G" evidence="4">
        <location>
            <begin position="15"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="62"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="134"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00014898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR006230-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32285" checksum="5262D4DAE751CF7D" modified="2013-07-24" version="1">MAEAQSIQWFPGHMAKTRRKIQEDIKLVDVVAELLDARVPQSSSNPVLRDIIQRKPKVVLLNKSDMADPAQTSKWVSYFASQGEKAIPLESKTGKGLGAFYPTVREVLKPQIEAWEKKGMVGRPIRVMVVGIPNVGKSSFINRMILGGGAGKAAVQDRPGVTRQNRWFTVGKGFELLDTPGVLWPKFEDPIVGEHLAFTGAVRDEILDMESLAARLLELLMELYPNAINSRYKTDIRPEEHLPGHELLERVGRKRGMLISGGEVNTERAAITVLDEYRGGKLGRITLERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRF6</accession>
    <name>R6YRF6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oxidoreductase aldo/keto reductase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02310</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31166">
        <property type="protein sequence ID" value="CDD31166"/>
        <property type="gene ID" value="BN815_02310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="327"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="365" mass="40326" checksum="D2BA1A05BDDE28D0" modified="2013-07-24" version="1">MEYRKLPHGEEQISIIGLGNSSLTSQVGEKEIQATVEMALESGVNYFDMAAGDAAPFAAYGKALAGCREKAYLQVHFGADYHTGKYGWTQDLEEIKRSISWQLEALQTDYIDFGFIHCVDELADLEKAVSGGALDYIQSLKKQGVVRHVGLSSHTPAVVQKALDLGILDMVMFSINPGYDYQQGEYAIGQVDERQALYRRCQAEGVGISVMKAFSGGQLLKAETSPFRQALTEYQCIQYALDKPGVLTVLPGVRDRQDLQRILGFCSASAQERDYSILGTFAPQDANGVCVYCNHCQPCPMGLDVGLINKYYDLSKAGDILARDHYNNLEKTAGDCVSCGHCDSRCPFHVAQSQRMEEIREYFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRH4</accession>
    <name>R6YRH4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein-arginine kinase</fullName>
            <ecNumber evidence="5">2.7.14.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">mcsB</name>
        <name evidence="9" type="ORF">BN815_02330</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the specific phosphorylation of arginine residues in proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + L-arginyl-[protein] = ADP + H(+) + N(omega)-phospho-L-arginyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:43384"/>
            <dbReference type="Rhea" id="RHEA-COMP:10532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10533"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29965"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83226"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.14.1"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="5">Appears to be allosterically activated by the binding of pArg-containing polypeptides to the pArg-binding pocket localized in the C-terminal domain of McsB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 7">Belongs to the ATP:guanido phosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.14.1" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31186">
        <property type="protein sequence ID" value="CDD31186"/>
        <property type="gene ID" value="BN815_02330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004111">
        <property type="term" value="F:creatine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046314">
        <property type="term" value="P:phosphocreatine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07930">
        <property type="entry name" value="bacterial_phosphagen_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00602">
        <property type="entry name" value="Prot_Arg_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023660">
        <property type="entry name" value="Arg_Kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000749">
        <property type="entry name" value="ATP-guanido_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022415">
        <property type="entry name" value="ATP-guanido_PTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022414">
        <property type="entry name" value="ATP-guanido_PTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11547">
        <property type="entry name" value="PTHR11547"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00217">
        <property type="entry name" value="ATP-gua_Ptrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00112">
        <property type="entry name" value="PHOSPHAGEN_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51510">
        <property type="entry name" value="PHOSPHAGEN_KINASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phosphagen kinase C-terminal" evidence="8">
        <location>
            <begin position="17"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RDXXRA motif of the pArg binding pocket involved in allosteric regulation" evidence="5">
        <location>
            <begin position="329"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="20"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="170"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="201"/>
            <end position="206"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="346" mass="38227" checksum="EF6A84D892472388" modified="2013-07-24" version="1">MTETAKWYEKAGNCGDVVISTRVRLARNLKQYPFPARATDKQREAVEQKVKDALLSGNSILSKEFRFLPLESASEEEAVSLVERHIVSPEFISDRRGKAVLISEDESISIMINEEDHLRIQVLREGLSLKEAAETADRIDTLLSETLDFAYDSEFGYLTQCPTNLGTGLRASVMLHLPALTESGAMPRVSSNLSKLGLTLRGTYGEGSKITGALYQLSNQITLGLSESEAVENLRAITVQLMEEERKARSQMSENIAWQDKIDRAAGILKTARVLSSSECMELLSYIRLGLSTGVLQGVTTQELNALMVNAQPATLMAKAGKQLDQNQRDILRAQMAREACAKIKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRK1</accession>
    <name>R6YRK1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ScpA/B protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02365</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31221">
        <property type="protein sequence ID" value="CDD31221"/>
        <property type="gene ID" value="BN815_02365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003768">
        <property type="entry name" value="ScpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33969">
        <property type="entry name" value="PTHR33969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02616">
        <property type="entry name" value="SMC_ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="26852" checksum="2304799B71740C62" modified="2013-07-24" version="1">MEKLEYHLQVFDGPLDLLLALIAKNKLDIYDIPIAELLDQYLEQIALMREADMDVASEFLEMAARLVQIKAASLLPQHEQDEEDPRAELTGQLLEYDQCKKAAAQLAAQCSFDRLTRPPEPIPADYTYQRIHDPREIAQALVSAWGKGRSLLPPKPESFSALVSRKIVSVASQAIAILRQLWKKKSLPYRALFAGKRDRSQRVAAFLAVLELVKNRRLRIEGEGEDLEVTLVDGGKPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRR0</accession>
    <name>R6YRR0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00214</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31276">
        <property type="protein sequence ID" value="CDD31276"/>
        <property type="gene ID" value="BN815_00214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008577">
        <property type="entry name" value="DUF859"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05895">
        <property type="entry name" value="DUF859"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="635" mass="66111" checksum="8F13E65DA3C5ABF6" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRZ3</accession>
    <name>R6YRZ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00281</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000406">
        <property type="protein sequence ID" value="CDD31346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31346">
        <property type="protein sequence ID" value="CDD31346"/>
        <property type="gene ID" value="BN815_00281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="13147" checksum="7FD74AEF9AB3CD51" modified="2013-07-24" version="1">MEEKEISNIYAIPANYTDSGKLLGGMVEPRNAVETGFLLFLVGAPELLWIPTSGTIRVVVMTVTLLPLGVVSLMGVDGGSLFQYLGHILRFWTHRRKLHFRRVSSYGKEKRKAKKKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS21</accession>
    <name>R6YS21_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00303</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31371">
        <property type="protein sequence ID" value="CDD31371"/>
        <property type="gene ID" value="BN815_00303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425825" evidence="2">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="19235" checksum="0FAE16B9D2D4BF8D" modified="2013-07-24" version="1">MKNSMKLALCGVMAALSTVLLFLTGAAPVATLALPAIAGCLLIPVVVEVGLPWAFGVYGVCSVLGVFLAPDRQALLFYVLFFGHYPALFAVLGRIRAKALRYVAKLLVFNAAMALEVLLSVYLLGIPFESFAILGPLGPVLLAVLANVVFIVFDRALEGLIVQYLHRLHPRMAKILRGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSW4</accession>
    <name>R6YSW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31686">
        <property type="protein sequence ID" value="CDD31686"/>
        <property type="gene ID" value="BN815_00443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="28040" checksum="ED7F1FEDAB16718C" modified="2013-07-24" version="1">MRKTVSILHYELKMQAKRPAVWGVFLAATAMAQLDCFPSAQNLARLEFLNQPAYFVHRVMTLDALLLLFGLAVLLANRFPADRKNAMGHLFRSYPLERRQYILGKLLGGFCLAYLLTALFLLCNTAVYVAAAPFPNAPWEWLVPLGKALALCAFPASWFTGLAAVALPGVVDIRLFYAAAALFFGWNAATVGSAESMPFCLLTAGDLSRLLWVHPKWPGLAWGSVLANAAFLLGGGVLCACLPFWKLSFWRRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9F4</accession>
    <name>R6Z9F4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sortase SrtB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00507</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27117">
        <property type="protein sequence ID" value="CDD27117"/>
        <property type="gene ID" value="BN815_00507"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05826">
        <property type="entry name" value="Sortase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009835">
        <property type="entry name" value="SrtB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426455" evidence="3">
        <location>
            <begin position="35"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="31"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="31"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="28870" checksum="BDAE32DFDFDFEF21" modified="2013-07-24" version="1">MKKRGLAILIAVLGMLCVVCGALLLQGNPTPVTAEPSPSSTVEATPSPAPAETPEPARSQPETEEPYVSPIDFASLQAQNPDIYGWLRIPGTEFDFPLVQRQGDDSFYLTHDSDGNESSAGAIFTESSYNSTTMEDPVTVAYGHQMHAGTMFGKLQETYSQENALEDYGEVIVYLPEKELHYQVFAAVPYDNRHILYNYDCTDSRRFNAFLNSIYEVREIGAQFASDVTVSTDDEVLVLSTCLAGNSQRRYLVLAVCQAEIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9G0</accession>
    <name>R6Z9G0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific protein-tyrosine kinase</fullName>
            <ecNumber evidence="3">2.7.10.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00509</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-tyrosyl-[protein] = ADP + H(+) + O-phospho-L-tyrosyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:10596"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.10.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CpsD/CapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.10.2" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27122">
        <property type="protein sequence ID" value="CDD27122"/>
        <property type="gene ID" value="BN815_00509"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004715">
        <property type="term" value="F:non-membrane spanning protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005702">
        <property type="entry name" value="EPS_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01007">
        <property type="entry name" value="eps_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0829">Tyrosine-protein kinase</keyword>
    <feature type="domain" description="AAA_31" evidence="9">
        <location>
            <begin position="51"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28064" checksum="7E40A5A26BF2FD62" modified="2013-07-24" version="1">MFGKNKKGNVSDSEYGAMLGGHLNFAASEAYKLLRTNLMYALTGEETDECRVVGVTSSVRGEGKSTTTLNLAYSIAEAGQFVLVLECDMRLPTLAKRLGIDGSKGISNLLAGLCNGSEVIKRTNLHQNLYVLPAGEIPPNPSELLGSERMKVSLDVLRKDFDYILLDLPPVNAVSDPLIASKLTDGMILVVRQNYSNKRSLAEAVRQLRFVDAKILGFVMTSSDSGAKGNKKYYKKYYKQYGYGYGYGQQKEKTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA18</accession>
    <name>R6ZA18_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="3">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00590</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27322">
        <property type="protein sequence ID" value="CDD27322"/>
        <property type="gene ID" value="BN815_00590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023095">
        <property type="entry name" value="Ade_MeTrfase_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012263">
        <property type="entry name" value="M_m6A_EcoRV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012327">
        <property type="entry name" value="MeTrfase_D12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30481">
        <property type="entry name" value="PTHR30481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02086">
        <property type="entry name" value="MethyltransfD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000398">
        <property type="entry name" value="M_m6A_EcoRV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00505">
        <property type="entry name" value="D12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="33282" checksum="98E09A8ECE5214DB" modified="2013-07-24" version="1">MNPSPLRYPGGKYKLYKYVSELVKENKCTTYIEPFCGGAAIALELLFEGIVKDVIINDYDYTIFCFWNSILHETEEFVQLILDTQITMDEWHKQKAVRNELDTHSSLEIGFSTFFLNRTNRSGIIDKAGPIGGLSQQGDYPIDCRFNKVRLISQIQKIAEYKDHIMIYNMEALDFIEDIILKKRKSFVFFDPPYYGKGPGLYTNFYSHGDHANLANTILQRLKHRKWIVTYDNVNAIKAMYTKVPSIEFKLQYTLQRKRSSSEVMFFSKNLQRPTNEGSLINILTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAT1</accession>
    <name>R6ZAT1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27562">
        <property type="protein sequence ID" value="CDD27562"/>
        <property type="gene ID" value="BN815_00654"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="807" mass="87949" checksum="3478AB4A5C1F3673" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCW3</accession>
    <name>R6ZCW3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="3 12">6.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 12">AIR synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 12">AIRS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 12">Phosphoribosyl-aminoimidazole synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">purM</name>
        <name evidence="15" type="ORF">BN815_00829</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 12">
            <text>2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the AIR synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="3 12"/>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28342">
        <property type="protein sequence ID" value="CDD28342"/>
        <property type="gene ID" value="BN815_00829"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00741">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="PTHR10520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00878">
        <property type="entry name" value="purM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRS" evidence="13">
        <location>
            <begin position="61"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="14">
        <location>
            <begin position="176"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD28342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="36511" checksum="EA7F6C053B55EA71" modified="2013-07-24" version="1">MKSYSDSYKAAGVDVTAGYESVELMKEHVKRTVIPGVVSGIGGFGGLFAPDLSGMEEPVLVSGTDGVGTKLKIAMLLDKHDTIGIDAVAMCVNDVVCCGARPLFFLDYIACGKNFPEKIAQIVAGVAEGCVQSGCALIGGETAEHPGMMPEEDYDLAGFTVGVVDKKKIIDGSRLEAGDVLLGVKSSGVHSNGFSLVRKVFGIGADDQADKEILSHYYDELGATLGETLLTPTRIYVKPVLAAIQAADIKAISHITGGGFYENIPRMLKEGLTAKIEKAAVPVLPIFAMIQAAGNIPERDMFNTFNMGVGLCVAVSKDTAQAALDAFAAAGEEAVVLGEVVEGSEGVILC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEP3</accession>
    <name>R6ZEP3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Low molecular weight phosphotyrosine protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00076</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the low molecular weight phosphotyrosine protein phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000113">
        <property type="protein sequence ID" value="CDD28967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28967">
        <property type="protein sequence ID" value="CDD28967"/>
        <property type="gene ID" value="BN815_00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017867">
        <property type="entry name" value="Tyr_phospatase_low_mol_wt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00719">
        <property type="entry name" value="LMWPTPASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="4">
        <location>
            <begin position="2"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="16891" checksum="3FC2A67B9D26315C" modified="2013-07-24" version="1">MTKILFICHGNICRSPMAEFVMKDLVRKAGLEKSFYIESAATSREELGNPVYPPARRKLAEHGISCQGKTARQLTREDYQSFDLLVGMDWANLRNMERICGGDPQGKLHLLLDYTVRPGQVADPWYTGDFDATWRDVLEGCQGLLAQLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG34</accession>
    <name>R6ZG34_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-glucosidase-like glycosyl hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29422">
        <property type="protein sequence ID" value="CDD29422"/>
        <property type="gene ID" value="BN815_01150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026891">
        <property type="entry name" value="Fn3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002772">
        <property type="entry name" value="Glyco_hydro_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14310">
        <property type="entry name" value="Fn3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01915">
        <property type="entry name" value="Glyco_hydro_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00133">
        <property type="entry name" value="GLHYDRLASE3"/>
    </dbReference>
    <dbReference type="SMART" id="SM01217">
        <property type="entry name" value="Fn3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="SSF52279"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fn3_like" evidence="2">
        <location>
            <begin position="179"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="647" mass="70469" checksum="CA50E73994A4E3DC" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHA7</accession>
    <name>R6ZHA7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29842">
        <property type="protein sequence ID" value="CDD29842"/>
        <property type="gene ID" value="BN815_00103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="24054" checksum="7AAFA3588FFBBB9F" modified="2013-07-24" version="1">MDKERNAHQIVRKDGKGCFVESLNDAFSIGRCHLAFAAYDLNRPAGERQTNLVQIYLDCGELLELCRKAESGELLLRLQDKKQKGDKTPLYQCMGGTSAEKLRRIGRPRSDGKSLSRIFQLLPGNKSDFLLVADSGPGETDEKGLIVPRFGKQPENHVVISLSMGHFCELLLLTRAHYLAWLTASYCRGEEKAFPTQEPEQIPTEPQEPKMAMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIF3</accession>
    <name>R6ZIF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30232">
        <property type="protein sequence ID" value="CDD30232"/>
        <property type="gene ID" value="BN815_01475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="35" mass="4005" checksum="CBB5E5DD1BE100DB" modified="2013-07-24" version="1">MKGYNHKRRMLFVRITAAVLAVLMVATVFTVLLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIR5</accession>
    <name>R6ZIR5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30347">
        <property type="protein sequence ID" value="CDD30347"/>
        <property type="gene ID" value="BN815_00122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="8"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="42530" checksum="B067A5BAC462EC6E" modified="2013-07-24" version="1">MSEKYDKIIIGAGFYGLYSALFCGEKGQRVLVLECDPAPFGRATYINQARVHQGYHYPRSLSTAMKSAGYFERFHKDFSFCINREFRKVYATSSVYSWTNGAQFKKFCEAAHIPCEELHAELFFKKGMCDRAFLTREYTYDATILKNYYLERLREFPNVTILCGAKLTGIEKTTDSFVLHVEGKEDVETGFLLNATYAATNQILGMLGYEKFGIKYELCEIILCEVNDSLRQYGFTVMDGPFFSIMPFGKTGLHSLTSVTFTPHTTSYAPLPTFPCQERSGGTCSPEHLGNCNTCPAKPATAFPYMASLARKYLKDDYGFSYHSSLFSMKPILMSSEIDDSRPTVIRKYSSHPTCVGVLSGKINTVYDLDEALSDDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIU9</accession>
    <name>R6ZIU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">MiaB-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01608</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30387">
        <property type="protein sequence ID" value="CDD30387"/>
        <property type="gene ID" value="BN815_01608"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006467">
        <property type="entry name" value="MiaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01579">
        <property type="entry name" value="MiaB-like-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="9">
        <location>
            <begin position="1"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="10">
        <location>
            <begin position="138"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="8">
        <location>
            <begin position="379"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="440" mass="48426" checksum="354C2E5D22B25D83" modified="2013-07-24" version="1">MTVKIITLGCKVNQYESQAMLEALLAAGFTQAAPDEAAGVVVVNSCTVTAQSDHKVRQALRRAKKDNPGAVTVLTGCMPQAFPDAAAALLEADIVLGNTKRSDLVPRLQEFLATKQRVVDIAPHVTGEPFEPLHVSEFHGRTRAFLKIQDGCDRFCAYCIIPYARGRVRSKALEDIRQEVAQLGQAGYKEVVLTGINLPAYGKELGLHLCDAVEAACEAPGIQRVRLGSLEPEQLXXGSLEPEHLTPEVIARMASQDKLCPQFHLSLQSGCDATLRRMNRHYTTAEYAQIVGNLREAFPGCAITTDVMVGFAGETEEEFEASLSFVRKIGFSKVHVFAYSRRPGTRAYDMPGQVTVREKEDRSHRMIEATRATQQAFLQAQLGQAEEVLFEQQKEQGLWEGYTRNYTHVLAPSGRDLSGQLVQVRLESVQGESCVGKIEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ42</accession>
    <name>R6ZJ42_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH lysR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01693</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000258">
        <property type="protein sequence ID" value="CDD30477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30477">
        <property type="protein sequence ID" value="CDD30477"/>
        <property type="gene ID" value="BN815_01693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="34056" checksum="49224B22F71A2A6B" modified="2013-07-24" version="1">MYNPQLETFLAVVESGSFNKAAERLYISPPAVIKQINLLEKSLDLQLFVRTHRGLRLTKAGHSLYQDAKYIIQYCKDSVTRARNAMQESESVIRIGTSPMTPAQVLVDLWPRVQAYCPGVKFQLVPFDNTPENAREILGNLGQNIDVVAGIFDETMLGLRKCAGLELSREPICCAVSIHHRLAQKDSLTIQDLYGERLMLMHRDWSHHVDLLRDDLWKNHPQIHIVDFDFYDVGVFNQCENNNCVLMAVENWRYVHPLLKILPVEWGYTIPFGLLHAPRPSPVVKQFLRAVQAVGVRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJP9</accession>
    <name>R6ZJP9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01882</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000302">
        <property type="protein sequence ID" value="CDD30677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30677">
        <property type="protein sequence ID" value="CDD30677"/>
        <property type="gene ID" value="BN815_01882"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="270" mass="27514" checksum="4D0C6E6DB9736B92" modified="2013-07-24" version="1">MVGDDPQGHVGLGVVAVVHPGNLADFFHDVLHGVHQKQVVHVLHHTGQALQAHAGVDVLLHQIGVVAVAVVVKLGEHQVPHFHKAVAVAAHAAGGLAAAVLLAPVEVDFRAGAAGAGAVLPKVVLLAQALHVALFHADFLGPDVPGLVVVLIDGDVQLLLGHLQHLGEELPGKGDGLPLKVIAKGEVAQHLKIGAVAVGVAHVLNVTGADALLAGGHTPPGGLHLAGEVLLHGRHAGVDEQQAVVPLGNQRKAGKPQVLLALKILQKFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJQ4</accession>
    <name>R6ZJQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">IstB domain protein ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01887</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000305">
        <property type="protein sequence ID" value="CDD30682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30682">
        <property type="protein sequence ID" value="CDD30682"/>
        <property type="gene ID" value="BN815_01887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028350">
        <property type="entry name" value="DNAC/ATP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002611">
        <property type="entry name" value="IstB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01695">
        <property type="entry name" value="IstB_IS21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003073">
        <property type="entry name" value="DNAC_TnpB_IstB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438643" evidence="1">
        <location>
            <begin position="20"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="IstB_IS21" evidence="2">
        <location>
            <begin position="10"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="260" mass="29603" checksum="98C46CA900BB8CCE" modified="2013-07-24" version="1">MLNQATMDMLTAMKLTAMAAEFANQLKDPTFNELGFEERLGLLVNAEWNRRQSNKLNRFIRNARFAVPSATVEGIEYYEDRKLDKAQILRFATGQYIDEGHHIILKGASGNGKTYIACALGNAACRRFKKVQYIRMPELLDELSIARSGGTLKKVLESYKKKDLLILDEWLIRPLSPQESYDMLEIVEARCHKSTIFCTQYESEGWYTRIDPNPESDSPVSEAIMDRIIHNAYEVLVDGRVSMRERKGLKAAREGGGKDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJR9</accession>
    <name>R6ZJR9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the manganese catalase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30697">
        <property type="protein sequence ID" value="CDD30697"/>
        <property type="gene ID" value="BN815_01902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007760">
        <property type="entry name" value="Mn_catalase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05067">
        <property type="entry name" value="Mn_catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15386" checksum="8414E2081FD92870" modified="2013-07-24" version="1">MFVYEKRLQYPIRIKNTNPRLAKIIISQYGGPHGEIGASLRYLSQRYAMPIPELKAILTDIGTEELSHLEMVGTIVYQLTRNMTPEQIKAAGFDDYFVDHTAGVYPVAASGAPFNAATFSVTGDTIADLHEDMSADGAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKD7</accession>
    <name>R6ZKD7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative efflux protein MATE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000343">
        <property type="protein sequence ID" value="CDD30922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30922">
        <property type="protein sequence ID" value="CDD30922"/>
        <property type="gene ID" value="BN815_02084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="315"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="359"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="394"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="418"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="447" mass="47512" checksum="33E6807B1340FE20" modified="2013-07-24" version="1">MNDTFMKERPVLPLLLSMGLPMALSMLVNSLYNIVDSFFVAQISEDAMTALSLVFPIQNFINAVGIGFGVGINAVISLHLGAGQRDEADRAASQGLALSLVHGVVLTVAGIALMPAFLGMFTTSQAVIGLGTRYSNVAFSFTVMIMLGLVFEKLFQSVGAMKTTMASMLCGCVANILLDPVLIFGLGPFPALGIEGAALATGIGQTLTLAVYLAVYFLRPIQVRIRRKYLRPRGNMAKRLYAIGIPATLNLALPSLLVSALNAILAAYSQVYILVLGIYYKLQTFLYLPANGIVQGMRPIIGYNYGAGEHKRVSQIYHTVLCLCGGIMLAGTVICLLLPSQLMGLFTQTPETIQVGAQALRIISGGFLVSAVSVASCGALEGVGKGTPSLVISLCRYLVVIVPAAFLLSRAFGPVGVWHAFWVAEALTALVAWVVYHRAMGAKKIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKK4</accession>
    <name>R6ZKK4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Trypsin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02151</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30992">
        <property type="protein sequence ID" value="CDD30992"/>
        <property type="gene ID" value="BN815_02151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="442"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="53"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="524" mass="55088" checksum="2A703B1971271DAE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKS5</accession>
    <name>R6ZKS5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02191</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000363">
        <property type="protein sequence ID" value="CDD31037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31037">
        <property type="protein sequence ID" value="CDD31037"/>
        <property type="gene ID" value="BN815_02191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9223" checksum="7CAB4CAD1AA12CF9" modified="2013-07-24" version="1">MFQKVLEYAGEYRKTTYLSMVVMLIGIVMNVLPFLFIYQLIRPLLLGGSLELGYAAWRVAAIAVCGILYGPLPPVGSCMPFCM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKW6</accession>
    <name>R6ZKW6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage capsid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02240</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31087">
        <property type="protein sequence ID" value="CDD31087"/>
        <property type="gene ID" value="BN815_02240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="274" mass="28480" checksum="181B0479431CAA9F" modified="2013-07-24" version="1">MEQFFASAGSAALFPEYVARAVRQGMERASKVTDLVATVTKVDGMDYRTIDPEGGTWEPTTVAEGAQLPQATLRLSSGLVKLYKRGQVLQSSYEALRLQKLDLFTVALAQVGAGIAAAQMGDAVDVLINGDGSKGGVSFTAAAGSTSLAYSDFLALWGSLAPYQLNVLVAGTDGIQKLLAIDEFKDAQAGLNFQGTGKLCTPLGATLVHVPGMAAGKIIALDKSCALEMVQSGDICVDSGKLIDRQLDEISISATAGFARIFSGAAQGVSYTAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLL8</accession>
    <name>R6ZLL8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">P-loop_TraG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00282</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000406">
        <property type="protein sequence ID" value="CDD31347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31347">
        <property type="protein sequence ID" value="CDD31347"/>
        <property type="gene ID" value="BN815_00282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043964">
        <property type="entry name" value="P-loop_TraG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19044">
        <property type="entry name" value="P-loop_TraG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P-loop_TraG" evidence="2">
        <location>
            <begin position="439"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="833"/>
            <end position="868"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="868" mass="98550" checksum="F29695804111D1ED" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLN4</accession>
    <name>R6ZLN4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage II sporulation protein D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000415">
        <property type="protein sequence ID" value="CDD31367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31367">
        <property type="protein sequence ID" value="CDD31367"/>
        <property type="gene ID" value="BN815_00299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013486">
        <property type="entry name" value="SpoIID/LytB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013693">
        <property type="entry name" value="SpoIID/LytB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010916">
        <property type="entry name" value="TonB_box_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30032:SF4">
        <property type="entry name" value="PTHR30032:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08486">
        <property type="entry name" value="SpoIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02669">
        <property type="entry name" value="SpoIID_LytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00430">
        <property type="entry name" value="TONB_DEPENDENT_REC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoIID" evidence="1">
        <location>
            <begin position="86"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="355" mass="37575" checksum="E2A0BD63128C9EF3" modified="2013-07-24" version="1">MSPQTRKRARSLLALFLALYAAFTLLPGGVYALYRAQESPPPAQEASPSPAAAQPTATAAPGFLEGHLPAATPAPQEDSFTLYDTATGETFTVTAEEFLPAALACEMDLSAPEEALKAQAVALYTFYSYQRAQHQGEAAHFACDTANWLVYVPQSALEERWGEDFPAYYETLQQAVAAVKGQRLTWEGEPICAAFFAISGGATASSANVWGQEFPYLQSVASPGDCFASGYLSTVTLTAQQLQAAGEAAWGDGVDFSLPREQWFTDIAATPAGYVTSATVGGRLCTGEELREAFGLRSACFTLDTSGGEFQFTVKGWGHGVGMSQAGAAFLANQGASYQEILAHYYPGALLEGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUI7</accession>
    <name>R6XUI7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Toxin-antitoxin system toxin component PIN family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27393">
        <property type="protein sequence ID" value="CDD27393"/>
        <property type="gene ID" value="BN815_00615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002850">
        <property type="entry name" value="PIN_toxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34610">
        <property type="entry name" value="PTHR34610"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00305">
        <property type="entry name" value="TIGR00305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14683" checksum="029DF3D13CF160C6" modified="2013-07-24" version="1">MLMLAVIDANILVSALWSRNGSPAKVLSLVLNGKVIPCIDSRIMHEYRAVLSRPKFGFTEREIDALLSWFEDYGFSVVPEPLEDAFIDEADKKFYEVARHCGAVLVTGNLKHFPSDPQIVNAATFLKMVQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV13</accession>
    <name>R6XV13_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Streptothricin acetyl-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27538">
        <property type="protein sequence ID" value="CDD27538"/>
        <property type="gene ID" value="BN815_00651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008125">
        <property type="entry name" value="Streptothricin_AcTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01754">
        <property type="entry name" value="SACTRNSFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="27"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="176" mass="20112" checksum="1FD4BBE03EDBA337" modified="2013-07-24" version="1">MIEIKIIDAAHKDDINIPNEPFQLIGRMIPSYSDEQWNYSVRYFNEADITDGCFPDENYNYEEMKEKSVCIGAYDSGKCVGLAILQDAWFQYMYLYDLKVSKDYRKKGIASAMMQKAKEVCKAHGYAGIYTQGQDNNLAACLFYIKNGFHIGGLDTNVYKGTKQEGKADIIFYCDC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWV8</accession>
    <name>R6XWV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Sodium/proton-potassium antiporter GerN CPA2 family (TC 2.A.37.2.2)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00790</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28233">
        <property type="protein sequence ID" value="CDD28233"/>
        <property type="gene ID" value="BN815_00790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006812">
        <property type="term" value="P:cation transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="159"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="261"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="306"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="399"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="Na_H_Exchanger" evidence="5">
        <location>
            <begin position="13"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="467" mass="50327" checksum="227B914A4C04F3D6" modified="2013-07-24" version="1">MEGGYGFLLDLALILLSTKLLGLLTQRFQLPQVVGALLAGLILGPAVLNVIQETEFIKDTAEIGVIVMMFCAGMETDVNELKHSGKAAFIIALIGVLAPIGGGFALAYFFNQPGVIESDATTPVFLQNMFIGVILTATSVSISVETLKELGKLKTRSGNAILGAAIIDDVLDIIALTIISSMADSSVSIGIVLLQILGFFVFVAVAGFLFYKFYIHWVVKAEKGMHRQGFFVFVAVAGFLFYKFYVHWVVKAEKGMHRHVIIAFVFCLLMSYIAEVAFGVADITGAFCAGVIISMTQRSQYLNSKFDVLSYAYLSPLFFASIGLQVTLPEMTPAIIWFSVLLIVVAVLTKVVGCGLGAKLCHYQNYQAARIGVGMISRGEVALIVASKGMALGLMGNNFLGPVILMVVATTIVTPILLKFVFRWGPANTPPVEKGFSETYAQLGVLRSGIGVKEMAEKAQQAAQQKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZC1</accession>
    <name>R6XZC1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000122">
        <property type="protein sequence ID" value="CDD29083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29083">
        <property type="protein sequence ID" value="CDD29083"/>
        <property type="gene ID" value="BN815_01054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011256">
        <property type="entry name" value="Reg_factor_effector_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55136">
        <property type="entry name" value="SSF55136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="31056" checksum="FA00A1721BD8F95C" modified="2013-07-24" version="1">MPDERAAFFTTGQFAKLCSTTKETLFHYDSLGLLKPARVGENGYRYYAASQFFDFDLIAVLQSAGCSLQEIHAYMTHREPHAFAKLLRESERKLLLEQQKLEAMRRTLKNGVAATEAALSGKPGVPWLEKLPTAWYVATPVQGDVGSTNTLVRNIKDHLAYCDQSGRGEELSVGSIVTRASLLAGDYRESFYSTKLSQPVESPWLYERPAGLYACVLHRGPYQRLEETYPMLLAFLREQGCRVCGDSFETDLISYLATECEEDFILKLEVQVEKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZC3</accession>
    <name>R6XZC3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000002">
        <property type="protein sequence ID" value="CDD26965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26965">
        <property type="protein sequence ID" value="CDD26965"/>
        <property type="gene ID" value="BN815_00018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD26965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="398" mass="44800" checksum="B66E989FC4316158" modified="2013-07-24" version="1">MKKICLILECYKKNIISVAILLVVLIFALLQSVSFLGRVKYMTYTRDFLVGSNLNFNNTIYFMPMIFEGDPRSGIAFEEIKYGNIPGIESVICPKTATVKMTGKYINVLLCDDSFISTFAPIDQGDWFTTPGIKQDDIVACGYLFEDYSLGSQITVDFGWDTPLPFTFTIVGKKNEPSYLPSFGMQSNNVTAMDLFSQGHNTILVQESKEIDAFLEDSNLYHENCMIKLREDITAAERQEVEEFLLSKGSFLYFNTILENTEKEILNEIKRNLPLPLFLLSVSLVSLVSVSVIMVQKMLPAHSIYRLCGCSRGSSLRILFSGVGLIGIMGGIITTCYVIMYPTLLKYGVVLPEASIINTDLIPAVMGIVTLAIFAPILVIWVQTRRWSPLEEYRREQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZV8</accession>
    <name>R6XZV8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ABC_transp_aux domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00523</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000018">
        <property type="protein sequence ID" value="CDD27155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27155">
        <property type="protein sequence ID" value="CDD27155"/>
        <property type="gene ID" value="BN815_00523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019196">
        <property type="entry name" value="ABC_transp_unknown"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09822">
        <property type="entry name" value="ABC_transp_aux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="486"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="domain" description="ABC_transp_aux" evidence="3">
        <location>
            <begin position="66"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="513" mass="56443" checksum="33C6358D4052572A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0B6</accession>
    <name>R6Y0B6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00589</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27320">
        <property type="protein sequence ID" value="CDD27320"/>
        <property type="gene ID" value="BN815_00589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="266"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="266"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="496" mass="56265" checksum="323BABCECAE557C5" modified="2013-07-24" version="1">MAGAIQALKISELVNYYENPRHAIGSSEEDTLKKLFDAVGIQYMLNLAEDVQRNGLLGNQQVVVVYSETIHKYVVYEGNRRVAAIKLLLAPEHFGFLDRATIEKAKKIRQQGEIPDVINCYITDEEEAFFIMERLHSGEDKGRGTKQWTPREKEVFKVRQSHEKNLSYLIDFYVKKYFDGFDITTILPFTTIQRIFNNREVKKEIGLDIANESSFTSARMQLIIDASKWIVSEAEAADAAVTRLFNKARVIEDKLIPWIQEYTHGKSMDDNSAGEQSKPVDTDGQSDADKADDNPTNTGSNFTGSGAATSVGGESDRQQDDGTTGSSFNGRKGNFGGSRNLPYFFQGLNYSSLNPNDAETHGVTAVCRELQLFSDRRLVATYPIATTFLVRSIIEQSIIYYSKKHYIQGQNKLIWEKIKDIGKLSKIIENYKRNLPNYITDTTMRQYFTNLFGNYEDNVDPLNWVVHRPAEFQLDSSTLVELPRKGLLTLINFLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y184</accession>
    <name>R6Y184_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC-type sugar transport system permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00656</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27565">
        <property type="protein sequence ID" value="CDD27565"/>
        <property type="gene ID" value="BN815_00656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="63"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="32338" checksum="D1472A6A5676F99B" modified="2013-07-24" version="1">MKRTWKGYLFAGPLLLGFLLFYVLPFGQVVWDSLSQGTGKSQLFVGLENYSRMFQNDMFRMAFGNTMGFLGIGLPVILLLSYGLALFLKRQARRFQLLRTVFLLPYVMPVAGTVLLVDLLFSREGLVNRLLFTLGMPLADWLQSPAAFWVMLILYLWKSTGYAVVLLLAGLMAIPPDHYAVAQVEGAGRWQAFRYITMPQMWYALFIAFVFSLINAFKCFREIFLVGGEHPHPSVYMLQHFINNSFENLNYQRLSVASVLLFLVLTLVLGACALWVLRKEAARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1D4</accession>
    <name>R6Y1D4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Phosphate propanoyltransferase</fullName>
            <ecNumber evidence="4 7">2.3.1.222</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01283</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>phosphate + propanoyl-CoA = CoA + propanoyl phosphate</text>
            <dbReference type="Rhea" id="RHEA:28046"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57392"/>
            <dbReference type="ChEBI" id="CHEBI:58933"/>
            <dbReference type="EC" id="2.3.1.222"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Polyol metabolism; 1,2-propanediol degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the PduL family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.222" evidence="4 7"/>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29883">
        <property type="protein sequence ID" value="CDD29883"/>
        <property type="gene ID" value="BN815_01283"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00621"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051144">
        <property type="term" value="P:propanediol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008300">
        <property type="entry name" value="PTAC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39453">
        <property type="entry name" value="PTHR39453"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06130">
        <property type="entry name" value="PTAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010130">
        <property type="entry name" value="PduL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR010130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="188" mass="19940" checksum="BEF9004E1FDCE4BE" modified="2013-07-24" version="1">MKVMVETSAHHVHVSEADLEALFGKGAALTNKKDLSQPGQFACEEKVEVVGPKGTMKMSILGPTRPETQVEISLTDARKLGVTAPIRESGDLEGTPGCVLRGPAGEVTLEKGVIAAKRHIHFNPDEAKEAGVVDKQVVSVKVDYNGRSLIFGDVVCRVSPKYALAMHVDTDESNAAALPGTVDGEIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1Q2</accession>
    <name>R6Y1Q2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">S-adenosylmethionine synthase</fullName>
            <shortName evidence="11">AdoMet synthase</shortName>
            <ecNumber evidence="11">2.5.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">MAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Methionine adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">metK</name>
        <name evidence="17" type="ORF">BN815_01333</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="11">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 2 divalent ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11 13">Belongs to the AdoMet synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="11"/>
    <dbReference type="EMBL" id="CBGU010000187">
        <property type="protein sequence ID" value="CDD29993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29993">
        <property type="protein sequence ID" value="CDD29993"/>
        <property type="gene ID" value="BN815_01333"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00086">
        <property type="entry name" value="S_AdoMet_synth1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022630">
        <property type="entry name" value="S-AdoMet_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022629">
        <property type="entry name" value="S-AdoMet_synt_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022628">
        <property type="entry name" value="S-AdoMet_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02773">
        <property type="entry name" value="S-AdoMet_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02772">
        <property type="entry name" value="S-AdoMet_synt_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00438">
        <property type="entry name" value="S-AdoMet_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000497">
        <property type="entry name" value="MAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01034">
        <property type="entry name" value="metK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00376">
        <property type="entry name" value="ADOMET_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00377">
        <property type="entry name" value="ADOMET_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 11 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 11" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="10 11 12" id="KW-0630">Potassium</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S-AdoMet_synt_N" evidence="14">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_M" evidence="15">
        <location>
            <begin position="102"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="S-AdoMet_synt_C" evidence="16">
        <location>
            <begin position="220"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Flexible loop" evidence="11">
        <location>
            <begin position="77"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="151"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="217"/>
            <end position="218"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="226"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="232"/>
            <end position="233"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU004462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD29993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="373" mass="40108" checksum="F0176D5473C7E130" modified="2013-07-24" version="1">MSDAILDAIIQQDPEAHVACETTATTGVIHVMGEITTSCYVDIPAIVRQVVKDIGYDDPKCGFDGNTCGVLTSIDTQSPDIAMGVNQSLEAKNGETDENSLTGAGDQGMMFGYACDETPELMPLAISLSHKLAKQLAKVRKDGTLQYLRPDGKTQVTVEYDGDTVKRVDAIVISTQHDEDVDMAQLKQDLLHHVIQPVVPAGLVDENTRIFINPTGRFVIGGPVGDSGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNIVAAGLAKRCEIELAYAIGVAHPVSIMVDTFGTGKVEDSVLSQAVQQVFDLRPTAIIKELGLRRPIYRQLAAYGHMGREDLGVPWEETNRTEALLQAVANQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y206</accession>
    <name>R6Y206_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">V-type proton ATPase subunit E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01365</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase E subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30083">
        <property type="protein sequence ID" value="CDD30083"/>
        <property type="gene ID" value="BN815_01365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033178">
        <property type="term" value="C:proton-transporting two-sector ATPase complex, catalytic domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2320.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038495">
        <property type="entry name" value="ATPase_E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002842">
        <property type="entry name" value="ATPase_V1_Esu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01991">
        <property type="entry name" value="vATP-synt_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="203" mass="22222" checksum="C7A58A918332EAE3" modified="2013-07-24" version="1">MTGLEAILAHIEQEAQAEAQGLLDAAQAEAQATLESAQEEAQRRSQAILEEAQKGADAIRERAESAALLEKRDGLLRCKQQLIREALGQVCQELEQAPAQEYFSLLLELVGRWAQPGDGVLYLNARDLQRLPQGFQEELERIAPQGKIALSPQPRQLESGFVLAYGPVELDCTFPALFQEAYDQLRDAAGAILFAPAGAKEEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y223</accession>
    <name>R6Y223_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01374</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000194">
        <property type="protein sequence ID" value="CDD30108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30108">
        <property type="protein sequence ID" value="CDD30108"/>
        <property type="gene ID" value="BN815_01374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036649">
        <property type="entry name" value="Pyrophosphatase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50324">
        <property type="entry name" value="SSF50324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13859" checksum="559D007F1CFBBF64" modified="2013-07-24" version="1">MEYNPQFWQALDQLLARSALVIDRPKGSSHPRFPEMVYPLDYGYLENTASMDGEGVDVWVGTAQPPALDGLLWVVDLPKGDVEVKLLYGCTPQERELAFQFQNRPPYLLAQLALRPVAPLEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2D9</accession>
    <name>R6Y2D9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphotransferase system phosphocarrier protein HPr</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01466</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30223">
        <property type="protein sequence ID" value="CDD30223"/>
        <property type="gene ID" value="BN815_01466"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPr" evidence="1">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="9941" checksum="A8B2840AB2964C98" modified="2013-07-24" version="1">MVAKKVMLNNREGLHVRPAGLFSNEMQKFLSDVWVCHKEAAVSGKSIMNLIAAGIQCGDEVEIRCSGPDEEEALSRAVELIESGLGEAGGGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2U5</accession>
    <name>R6Y2U5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000230">
        <property type="protein sequence ID" value="CDD30358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30358">
        <property type="protein sequence ID" value="CDD30358"/>
        <property type="gene ID" value="BN815_01585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="9708" checksum="1B37D8CD2CA593B8" modified="2013-07-24" version="1">MYFAAISSRAAVRSGLWEISATTSWVVAPSFSRASWLLSSPGKEELSSAGVQAANPAANTKAAPARDAARFHLCFHLFISRLLSLVGMLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y340</accession>
    <name>R6Y340_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000243">
        <property type="protein sequence ID" value="CDD30433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30433">
        <property type="protein sequence ID" value="CDD30433"/>
        <property type="gene ID" value="BN815_01654"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="97" mass="11000" checksum="FEBE8028359E4BA8" modified="2013-07-24" version="1">MTYLPISFSKARSTASFKKVPPCTTMWSPRLRASTTRMTLYRAFFTTLVERPAEMFSMEAPSFWACFTEEFMNTVQRLPKSTGLSAKRPSLAKSAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y342</accession>
    <name>R6Y342_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">50S ribosomal subunit assembly factor BipA</fullName>
            <ecNumber evidence="3">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">GTP-binding protein BipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">bipA</name>
        <name evidence="5" type="ORF">BN815_00796</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">Binds to ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28265">
        <property type="protein sequence ID" value="CDD28265"/>
        <property type="gene ID" value="BN815_00796"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03710">
        <property type="entry name" value="BipA_TypA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00849">
        <property type="entry name" value="BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035651">
        <property type="entry name" value="BipA_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042116">
        <property type="entry name" value="TypA/BipA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006298">
        <property type="entry name" value="TypA_GTP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="PTHR42908:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01394">
        <property type="entry name" value="TypA_BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Tr-type G" evidence="4">
        <location>
            <begin position="5"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="17"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="130"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="608" mass="67382" checksum="955DE47E3E53875A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3I0</accession>
    <name>R6Y3I0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsR</name>
        <name evidence="6" type="ORF">BN815_01731</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30518">
        <property type="protein sequence ID" value="CDD30518"/>
        <property type="gene ID" value="BN815_01731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00270">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_S18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018275">
        <property type="entry name" value="Ribosomal_S18_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_S18_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479">
        <property type="entry name" value="PTHR13479"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00974">
        <property type="entry name" value="RIBOSOMALS18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="SSF46911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00057">
        <property type="entry name" value="RIBOSOMAL_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9661" checksum="FA312B9AF3932B62" modified="2013-07-24" version="1">MADRPEREVRRGGRKGRKKVCSFCVDRAEFIDYKDVAKLRRFISERGKILPRRVTGTCAYHQRALTVAIKRARHLALLPYTSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3K7</accession>
    <name>R6Y3K7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glucokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30553">
        <property type="protein sequence ID" value="CDD30553"/>
        <property type="gene ID" value="BN815_01766"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="315" mass="33326" checksum="FDA7007FDE7987EE" modified="2013-07-24" version="1">MKVYAGMDIGGTKVALGVFGEDKTLLGKTKYPSDASLSAEEFFQQAAAQLRALLGRLALPEEDLAGIGVGLPCMVRYPAGEVVLCAMLPALNGFGVKACLEGLFPGVQVAVDNDAHCAALAESRHGAGKGRQHMLYCPVSTGLSSGIIIDGKLFRGSSGFAGESGHTILTPGQGIACGCGNQGCVQSYASGGMIVRHIRQWIDAGEQTLMVQLAGAPEKIDARHLEMAARTGDPMALRALDQMALYLGVWVFNLYITLNINCFVFGGGLVNMGELLFGRVRQVFDSYCHTEEPVEFLFAQCGQEAGLLGALELLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3M0</accession>
    <name>R6Y3M0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000277">
        <property type="protein sequence ID" value="CDD30568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30568">
        <property type="protein sequence ID" value="CDD30568"/>
        <property type="gene ID" value="BN815_01781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="7762" checksum="1235B7D6371D170D" modified="2013-07-24" version="1">MAPARRAVRHRRLMGRLTESILETATQAQLAAAKALMAVGTLLVISKVAMHSSSEAISPMGAISWEADSEGSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Q7</accession>
    <name>R6Y3Q7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Thioredoxin reductase</fullName>
            <ecNumber evidence="4">1.8.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01824</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>[thioredoxin]-dithiol + NADP(+) = [thioredoxin]-disulfide + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:20345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.8.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="5">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.9" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30613">
        <property type="protein sequence ID" value="CDD30613"/>
        <property type="gene ID" value="BN815_01824"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004791">
        <property type="term" value="F:thioredoxin-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019430">
        <property type="term" value="P:removal of superoxide radicals"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008255">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_2_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005982">
        <property type="entry name" value="Thioredox_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01292">
        <property type="entry name" value="TRX_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00573">
        <property type="entry name" value="PYRIDINE_REDOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="6">
        <location>
            <begin position="3"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="32736" checksum="616D979395ECC1E6" modified="2013-07-24" version="1">MLYDVIVIGGGPGGYTAALYAARANLSVAILEKLSPGGQMGTTDVIDNYPGFPQGVNGFELAMQMKEGAERFGAQTQLAEVTQVELAGQVKTIHTSGGDYQARTVVLATGAHPRELGLPGERELRGRGVSYCATCDGMFYRGKTVVVVGGGNTAVSDVLYLSRLCEKVYLVHRRDTLRASKVYLDPLQKAENVEFVWDSEVKQLLRDQAVTGVRVRNKKTGEERDIPCGGVFVAVGYLPNTELYRGQVELDEAGYVLADETTQTNLPGVFAVGDLRKKPLRQVVTAASDGAVAAHFIEEYLNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y412</accession>
    <name>R6Y412_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphoryl diester phosphodiesterase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00886</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28585">
        <property type="protein sequence ID" value="CDD28585"/>
        <property type="gene ID" value="BN815_00886"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="17277" checksum="34BFE1E15CA0BF9C" modified="2013-07-24" version="1">MIQNTIQAYRIALDMGGDIFECDAALSADGVFYAFHDGTEPINLGREENLTTLPSQEIDRLVCINSAYGPSGVHVEKLEDVLQAFTHGELFNIDRAWEHLPQLDALLARYPHVLGQALVKTPVREEYLEFFRRCPRKYMYMAIVRTEEEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y542</accession>
    <name>R6Y542_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pro-sigmaK processing inhibitor BofA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02187</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000362">
        <property type="protein sequence ID" value="CDD31033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31033">
        <property type="protein sequence ID" value="CDD31033"/>
        <property type="gene ID" value="BN815_02187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010001">
        <property type="entry name" value="BofA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07441">
        <property type="entry name" value="BofA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="57" mass="5681" checksum="4681A611400994CF" modified="2013-07-24" version="1">MKGFLLSAALGFVALALVNLCGAYTGVLVPVNRLSLGAAGLLGVPGVTLLILLNAML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5G3</accession>
    <name>R6Y5G3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="2">PPIase</shortName>
            <ecNumber evidence="2">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02327</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31183">
        <property type="protein sequence ID" value="CDD31183"/>
        <property type="gene ID" value="BN815_02327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0697">Rotamase</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006529889" description="Peptidyl-prolyl cis-trans isomerase" evidence="2">
        <location>
            <begin position="29"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="3">
        <location>
            <begin position="84"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="285" mass="30976" checksum="4CFE260461887471" modified="2013-07-24" version="1">MKRKLLSGLSALLCACLLAGCGNSQPSAATTVLGTEDSADAQQSLVSQEDLTPKDNGKKPGYQLEMPEEGEEIAVITMETGEVIKLRFFPDEAPKAVYNFKVHALEGYYDGLTFHRVIENFMIQGGDPNGDGTGGESVWGEAFEDEFNDNLLNIDGSVSMANAGANTNGSQFFINATGGMSTDWDYYQQIYDQYKENAEYFDAMGVNTVDMSKVTDAVKKLYEENGGNPNLDGYYSTGGTGHTVFAQVFEGMENVYALSQVDTDSSDKPVEDMVIQSVEITTYEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5P5</accession>
    <name>R6Y5P5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000390">
        <property type="protein sequence ID" value="CDD31263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31263">
        <property type="protein sequence ID" value="CDD31263"/>
        <property type="gene ID" value="BN815_00208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="9320" checksum="EDC8158FA47D49E5" modified="2013-07-24" version="1">MAMPRWTPTKYHTGPIDEVVKEIQITMAEKEQGVHAYNSNLNPKNRRSLNDLYLMVIDGDDIWWYDINRRSTYQFITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5S8</accession>
    <name>R6Y5S8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31298">
        <property type="protein sequence ID" value="CDD31298"/>
        <property type="gene ID" value="BN815_00236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="7005" checksum="E6410EF21E32D339" modified="2013-07-24" version="1">MISEKRLYGVVSLTGIDFQKQGRGVFFFCSVTYTGFLKAIFLRIASQQAETKPAPVRPCVRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Z8</accession>
    <name>R6Y5Z8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00300</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000415">
        <property type="protein sequence ID" value="CDD31368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31368">
        <property type="protein sequence ID" value="CDD31368"/>
        <property type="gene ID" value="BN815_00300"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="455" mass="51581" checksum="DEA1A632C1F78766" modified="2013-07-24" version="1">MERLNHELPDSTTIRGLCEEYKRNNVITKEEYEHNRVKRGLRNADGTGVMAGLTHVCNVHGYLIADGDKIPDKGELTYRGINIEDIVRGCDAEDRFGFEEVAWLLIFGHLPTRSQYEGFSRLLFENRELPEYFPEDMIIKAPSKNIMNKLARSVLALYSYDDSPDDLSLENNMRQSISLIARMPSIMSYAYQVKRRHFDRESMFFHPYEPDHATAEAILNALRPDRRFTHQEAKLLDLLMVLHAEHGGGNNSTFTTRVLTSAGTDMYSAIGAAVGSLKGFKHGGANHQVRMMMDDLMAHVDRWDDEDEVEAYLEKILRGEAADGSGLIYGMGHAIYTLSDPRAVILKERAQGLAEEKGFGEKLRLYETVERLSPAAFRKVTGKDKVISANVDFYSGLVYEMLGIPEDLFTPMFAVSRIAGWCAHRIEELTTGGRIMRPAYRALPVDQKYVPLDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y626</accession>
    <name>R6Y626_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Anti-sigma-W factor RsiW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00324</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily. Anti-sigma-W factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31393">
        <property type="protein sequence ID" value="CDD31393"/>
        <property type="gene ID" value="BN815_00324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041916">
        <property type="entry name" value="Anti_sigma_zinc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027383">
        <property type="entry name" value="Znf_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13490">
        <property type="entry name" value="zf-HC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="zf-HC2" evidence="4">
        <location>
            <begin position="5"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00024353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="32336" checksum="CF757BAF2275D0F2" modified="2013-07-24" version="1">MKVTCKVIQDLLPLYHDGVASPDTAALVEEHLQTCEACQEEFHKLQEAVDLALPSPEREEQKTESLKKVKRSLRYKRLAVIAITLAVMIAIFIPVGMWMSIPCISPPLEEVAIDITEENGILNIHSVSSWTVTMRRAFYPDGTDAQEWERKNGSALILSAYYTPLEGLAAHFDGSEDELISGLSQWAITEEGWWELHRDDVEYLEDMDKMRTEYPDQPLPDYDQNAPRSPEEDVDFLYHGIKEVYYYDGLDAGIWGKENDELLADLEKHGTLLWTAEDGVVYNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6A1</accession>
    <name>R6Y6A1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH lysR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01147</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29415">
        <property type="protein sequence ID" value="CDD29415"/>
        <property type="gene ID" value="BN815_01147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="297" mass="33287" checksum="526B85A31BD7FDE4" modified="2013-07-24" version="1">MELRVLHYFLAVAREQSISAAAQSLHLTQPTLSTQLKALEEELGKQLLVRGTKGSRKVTLTEEGMILRKRAEEILTLVDKAEEEIAHSDDTVVGTVSIGAGETDIVRYFAKAARTLQKRYPDIRYQISSGNAEYVLEYLDKGLIDFGLVFGEVDQRKYQSLPLPAKDTWGVLMRRDSPLAEKEAITPQDLWDKPLLLSHQRGGSGALFRWLKRDASQLNVVATYNLVYNASLLVDEGLGYALTLDKLIHTEGTDLCFRPLSPGMEATAAIVWKKYQVFTKAADTFLRCLKEQLPQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y735</accession>
    <name>R6Y735_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29690">
        <property type="protein sequence ID" value="CDD29690"/>
        <property type="gene ID" value="BN815_01225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="131"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="226" mass="24927" checksum="B9815B6C80450401" modified="2013-07-24" version="1">MSKEEQYQKLCEINRVEGFDPTAFAVEYTDMNTGEVRKRLPVMIQMAWFRLKYPEGRIAVEVTPAKDCFVAKARVYPSYKDGLECYLAEATASRGPDPDHPSVSPREWAQTAAVGVALRNAGFGLQFGAAGEDYSQSSPEELATETPTSKPEEPAYEAEEPSPEEQLRQAMNTPCPIAKYKGKTLGDVLTLDPRAISWVANKFTGNSQISEAAKLLCDYALEQTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y750</accession>
    <name>R6Y750_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific recombinases DNA invertase Pin homologs</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01233</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29705">
        <property type="protein sequence ID" value="CDD29705"/>
        <property type="gene ID" value="BN815_01233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025378">
        <property type="entry name" value="DUF4368"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025827">
        <property type="entry name" value="Zn_ribbon_recom_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14287">
        <property type="entry name" value="DUF4368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13408">
        <property type="entry name" value="Zn_ribbon_recom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="2">
        <location>
            <begin position="2"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="3">
        <location>
            <begin position="163"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="449"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="521" mass="60590" checksum="D74DBA6420598F53" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7R8</accession>
    <name>R6Y7R8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycogen synthase</fullName>
            <ecNumber evidence="7">2.4.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Starch [bacterial glycogen] synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glgA</name>
        <name evidence="10" type="ORF">BN815_00596</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Synthesizes alpha-1,4-glucan chains using ADP-glucose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + ADP-alpha-D-glucose = [(1-&gt;4)-alpha-D-glucosyl](n+1) + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18189"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9587"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.4.1.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.21" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000033">
        <property type="protein sequence ID" value="CDD27344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27344">
        <property type="protein sequence ID" value="CDD27344"/>
        <property type="gene ID" value="BN815_00596"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033201">
        <property type="term" value="F:alpha-1,4-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004373">
        <property type="term" value="F:glycogen (starch) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009011">
        <property type="term" value="F:starch synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00484">
        <property type="entry name" value="Glycogen_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011835">
        <property type="entry name" value="GS/SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013534">
        <property type="entry name" value="Starch_synth_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08323">
        <property type="entry name" value="Glyco_transf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02095">
        <property type="entry name" value="glgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_5" evidence="9">
        <location>
            <begin position="35"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="8">
        <location>
            <begin position="324"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>ADP-alpha-D-glucose</name>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="514" mass="58060" checksum="D246FAD02DD1F5AD" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y843</accession>
    <name>R6Y843_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP synthase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01366</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase V0D/AC39 subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30085">
        <property type="protein sequence ID" value="CDD30085"/>
        <property type="gene ID" value="BN815_01366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1690.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036079">
        <property type="entry name" value="ATPase_su_c/d_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002843">
        <property type="entry name" value="ATPase_V0-cplx_csu/dsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044911">
        <property type="entry name" value="V-type_ATPase_su_c/d_dom_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035067">
        <property type="entry name" value="V-type_ATPase_suC/d"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01992">
        <property type="entry name" value="vATP-synt_AC39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103486">
        <property type="entry name" value="SSF103486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="322" mass="34928" checksum="8FD75C052E5332EA" modified="2013-07-24" version="1">MSEDYIYAVTRVHARETGLLGKNDLERLLACPDEKACLQVLQDKGWGTGEPSPTAEGLLAAEEAKTWDFLQEVAKDPAPLAPLLVPIDGNNLKAAIKCAATGTQPQGVFLPGGQWEPESLLEMAKARDFSPLPPAFAQAAAEASRAMLQTGDGQLCDVLVDRACLEEILRLGKASGLAVLERYGQWTVATADIQTAARACKAGKNREFLELALAPCDSLDVAALAQAAGQGMEPLLEYLESTPYSQGAQALRESFSAFEKWRDDQAMELVKGEKAEYESAGPLFAYAVARRREADTVRVILSGKRNGLEDGRIRERLRETYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y861</accession>
    <name>R6Y861_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">V-type ATP synthase subunit D 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase D subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000194">
        <property type="protein sequence ID" value="CDD30105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30105">
        <property type="protein sequence ID" value="CDD30105"/>
        <property type="gene ID" value="BN815_01371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002699">
        <property type="entry name" value="V_ATPase_D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11671">
        <property type="entry name" value="PTHR11671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01813">
        <property type="entry name" value="ATP-synt_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="7343" checksum="73C68F990277A9F8" modified="2013-07-24" version="1">MAAEIEKPRRRVNALEHVMIPQLQETIRYISMKLDENERSTQVRLMKVKDMMLQEAHGYEGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y868</accession>
    <name>R6Y868_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00029</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27484">
        <property type="protein sequence ID" value="CDD27484"/>
        <property type="gene ID" value="BN815_00029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026325">
        <property type="entry name" value="DUF932"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017686">
        <property type="entry name" value="Phg/plasmid-like_prot"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06067">
        <property type="entry name" value="DUF932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03299">
        <property type="entry name" value="LGT_TIGR03299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="310" mass="34829" checksum="BDB17351AE97959D" modified="2013-07-24" version="1">MAANVESMFYVRQAPWHGLGVRVESALSSDEALRLSGLDWQVVQQPIMTAGDIPIPGYKANLRDTDHQVLGVVTDRYRVVQNAEGFAFTDALLGEGVKYETAGSLQNGRKIWLLAKLPDRYIIEGDQVEPYLVFSNSHDGSGSIKVAMTPVRVVCQNTLNLALASAKRVWSTIHVGDLAGKMDEAHNTLLLAEKYMGQLGMEFSRLSKTKLSDQKVLDYIDLLLPMDDQPTDTHRKNMTRLREDMKRRYFDAPDLRYVGKNAYRFLNAVSDFATHAKPLRETANYRENLFARTMEGNPLIDKAYELALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8K7</accession>
    <name>R6Y8K7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">Signal peptidase I</fullName>
            <ecNumber evidence="4 7">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01503</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Membrane</location>
            <topology evidence="8">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="4 7"/>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30260">
        <property type="protein sequence ID" value="CDD30260"/>
        <property type="gene ID" value="BN815_01503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019757">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Lys-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019756">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00501">
        <property type="entry name" value="SPASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00760">
        <property type="entry name" value="SPASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="9">
        <location>
            <begin position="36"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="21887" checksum="1CA854633FF01A84" modified="2013-07-24" version="1">MAIKEKASPVLPTVQQLEAELKREKYRGRYWKMLRGTVAVLVVVAATAVLISNLLLPILRIYGSSMTPTLVNGNIVAAVRNGTYQRGDIIAFYYNNKILVKRVVGMPGEWVDMDENGNVTIDGEPLEEPYLTEKALGECDIELPYQVPEGRYFVMGDHRSVSSDSRSSQVGCVSEEQIVGKLLFRLWPLDEIGPIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y971</accession>
    <name>R6Y971_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30460">
        <property type="protein sequence ID" value="CDD30460"/>
        <property type="gene ID" value="BN815_01677"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425652" evidence="1">
        <location>
            <begin position="21"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="26219" checksum="9E98FB6FCB372F00" modified="2013-07-24" version="1">MPALAAIWRTGSSRAFSTMAAPVFSSPSAESTYSFTAGMASMRAVPPPATMPSSTAALVAARASSMRSFFSFISISVAAPTLMTATPPASLARRSWSFSLSNSEEVVSIWARIWPTRALISSLLPAPSTMMVFSLSTFTWRARPSWLSWVSFSSRPTSSEITWPPVKVAMSTSISLRRSPKPGALTATQVKVPRSLLRIKVVRASPSTSSAMMSSFLPDWTTCSSRGRISWMLEIFLSVMRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9A2</accession>
    <name>R6Y9A2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000261">
        <property type="protein sequence ID" value="CDD30490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30490">
        <property type="protein sequence ID" value="CDD30490"/>
        <property type="gene ID" value="BN815_01706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="90"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="15"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="17053" checksum="CB19D1AB0C5412EE" modified="2013-07-24" version="1">MPRGVKGSGKKPVNSKKPATEKKERKAYPTYQERIEAADKKMEQLQKLIASREVLIAQTEAKLAERKEALAKSQEALEKVTAKREHLVALMNKPAKEPKPKLSPEERAAHRREALAKAREAKKTKKAQMEALMEKLAQSGKSIEELMAELGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9K3</accession>
    <name>R6Y9K3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease Y</fullName>
            <shortName evidence="5">RNase Y</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rny</name>
        <name evidence="8" type="ORF">BN815_00142</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endoribonuclease that initiates mRNA decay.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the RNase Y family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000279">
        <property type="protein sequence ID" value="CDD30570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30570">
        <property type="protein sequence ID" value="CDD30570"/>
        <property type="gene ID" value="BN815_00142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00335">
        <property type="entry name" value="RNase_Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017705">
        <property type="entry name" value="Ribonuclease_Y"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022711">
        <property type="entry name" value="RNase_Y_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12826:SF15">
        <property type="entry name" value="PTHR12826:SF15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12072">
        <property type="entry name" value="RNase_Y_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03319">
        <property type="entry name" value="RNase_Y"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="HD" evidence="7">
        <location>
            <begin position="336"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="102"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="520" mass="58457" checksum="BE15919AE4323994" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9P7</accession>
    <name>R6Y9P7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000287">
        <property type="protein sequence ID" value="CDD30625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30625">
        <property type="protein sequence ID" value="CDD30625"/>
        <property type="gene ID" value="BN815_01836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="8933" checksum="0886ECB90AB4B004" modified="2013-07-24" version="1">MQARAHIPPPRKPPKEPPRQEPPPPEPPPPPAPAPAPKGEPGLLDAFFQDKERTIILALLLLLSGDEKNHELLFALLFLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9R3</accession>
    <name>R6Y9R3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA-binding protein KhpA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">KH-domain protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">khpA</name>
        <name evidence="3" type="ORF">BN815_01852</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A probable RNA chaperone. Forms a complex with KhpB which binds to cellular RNA and controls its expression. Plays a role in peptidoglycan (PG) homeostasis and cell length regulation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms a complex with KhpB.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KhpA RNA-binding protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30645">
        <property type="protein sequence ID" value="CDD30645"/>
        <property type="gene ID" value="BN815_01852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00088">
        <property type="entry name" value="UPF0109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020627">
        <property type="entry name" value="KhpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34654">
        <property type="entry name" value="PTHR34654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8361" checksum="F0DDBA965783E7F4" modified="2013-07-24" version="1">MEALLKAIASGLVEKPEDIVVTSEEQENGTTVYHLHVAEDDMGRVIGKQGRIAKAIRVVMRAAATRNDKKIMVEID</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9S3</accession>
    <name>R6Y9S3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ribosomal RNA small subunit methyltransferase H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000293">
        <property type="protein sequence ID" value="CDD30655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30655">
        <property type="protein sequence ID" value="CDD30655"/>
        <property type="gene ID" value="BN815_01862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002903">
        <property type="entry name" value="RsmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01795">
        <property type="entry name" value="Methyltransf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="46" mass="5163" checksum="2217891AB4F7AA6A" modified="2013-07-24" version="1">MCVCGRKPQGRLVYKKGLAPSAQEVAENPRARSARLRVIEKLPQEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA03</accession>
    <name>R6YA03_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01944</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30740">
        <property type="protein sequence ID" value="CDD30740"/>
        <property type="gene ID" value="BN815_01944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425681" evidence="2">
        <location>
            <begin position="30"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="26"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="191" mass="19848" checksum="9A5EAAE30AC802D4" modified="2013-07-24" version="1">MKKRMVFLAALALCAGLLCGCGDGSPASRTESTPAETSLPESQASLAGKDSSQDGEESGPVESPPYLEVSSGGSGVQAARSTYSWMITNEDGTGLDRNAQGPGPASMGEQLPWLEGAGTAELSWDGPAPDSVSVEGVPVSQLADYAAGQPVECDGDSFPLEEGEWVYTVYATWDSSEDWGGYAWYYVGITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAU4</accession>
    <name>R6YAU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ROK family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00194</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Transcriptional repressor of xylose-utilizing enzymes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ROK (NagC/XylR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000357">
        <property type="protein sequence ID" value="CDD31005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31005">
        <property type="protein sequence ID" value="CDD31005"/>
        <property type="gene ID" value="BN815_00194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042732">
        <property type="term" value="P:D-xylose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0859">Xylose metabolism</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="315"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="HTH marR-type" evidence="5">
        <location>
            <begin position="15"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="400" mass="43685" checksum="E491A8E5C0C77054" modified="2013-07-24" version="1">MKITQTRDIRAANRWEIMHQVLEHSPISRVEICRRTGLNKATVSTIVKEWIDKGLLAETELGKSGGGRKPILLQPLHQAGAAVALEIDISQVQAILTDLSGERVLAREQFPTLGESFPQVYHKVCQALDKLLAEMPPSPYGLVGIGVAVHGVVDLSGMIRFIPRLGWRNIDLRSLLEERYHVPVSLDNDGNLAALAQQNLEQASLGPEGQGSEALPQSLAVVNVGDSISTGLITNGEVFRGFHGFANAIGHHTINLDEPVQCSCGKYGCWEQYCSNGAVIAYANTVLPQPISTLEELITLIRHQDPLARQVMDRFLTYLAVGLTNIIFIFDCQAIAISSELLSALPYYLPEVMRKMVLPITHVEKVVLSRLGKSGAILGAASQAVFQFFQDTAHAMEPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB05</accession>
    <name>R6YB05_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Putative manganese efflux pump MntP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mntP</name>
        <name evidence="9" type="ORF">BN815_02218</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Probably functions as a manganese efflux pump.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the MntP (TC 9.B.29) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000370">
        <property type="protein sequence ID" value="CDD31065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31065">
        <property type="protein sequence ID" value="CDD31065"/>
        <property type="gene ID" value="BN815_02218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01521">
        <property type="entry name" value="MntP_pump"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003810">
        <property type="entry name" value="Mntp/YtaF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022929">
        <property type="entry name" value="Put_MntP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35529">
        <property type="entry name" value="PTHR35529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02659">
        <property type="entry name" value="Mntp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="39"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="163"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="19544" checksum="E2D5EC1A6406FE04" modified="2013-07-24" version="1">MGMMELFLIAVGLSMDAFAVAVCKGLALRKVNLGQMALVGLWFGGFQALMPLAGYFVGVQFKEQITAIDHWIAFALLAIIGGNMIRESLSKEEECPDASLSVKAMLPMAVATSIDALAVGVSFAFLSVNIGAAVSFIGVITFALSMVGVKVGSLFGAKYKSKAELAGGVILILMGLKILLEHLGVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB75</accession>
    <name>R6YB75_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00853</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28489">
        <property type="protein sequence ID" value="CDD28489"/>
        <property type="gene ID" value="BN815_00853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="11040" checksum="562A15B90CBC305A" modified="2013-07-24" version="1">MAEMNIKQIIDRLNAEFTGDTRKLVFWYDDNGEFVEDMQNVELENAKVYFLQADNQFATKLFLERQDTTTNYLIYAPFPKPDVRDNHLEDTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBD3</accession>
    <name>R6YBD3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal phosphate homeostasis protein</fullName>
            <shortName evidence="1">PLP homeostasis protein</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02374</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31230">
        <property type="protein sequence ID" value="CDD31230"/>
        <property type="gene ID" value="BN815_02374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02087">
        <property type="entry name" value="PLP_homeostasis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011078">
        <property type="entry name" value="PyrdxlP_homeostasis"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10146">
        <property type="entry name" value="PTHR10146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004848">
        <property type="entry name" value="YBL036c_PLPDEIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00044">
        <property type="entry name" value="TIGR00044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="4">
        <location>
            <begin position="20"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1 2">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="27465" checksum="99405D8A03B422A7" modified="2013-07-24" version="1">MMEKSFLERIQIFDENYPRIQEEIALAAEKAGRRPRDITLLAATKTVPLEVINHAIDSGLSAMGENRVQELLEKYDGLHREKCDIQFIGQLQTNKVKYLVDKVSCIQSVGSVKLAKEISRLCLREGATMKVLVEVNIGREESKGGVLPEALFEVVDEIRTLPGLHVEGLMAIPPICEKKAELCGYFSAVRQSYVDIAAKKLDNVSMNCLSMGMSSDFQEAIACGATMVRVGSSLFGKRDHPQHYYAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBJ8</accession>
    <name>R6YBJ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA binding domain excisionase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31300">
        <property type="protein sequence ID" value="CDD31300"/>
        <property type="gene ID" value="BN815_00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="1">
        <location>
            <begin position="17"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="69" mass="7883" checksum="7B7E92889E532F67" modified="2013-07-24" version="1">MKESAYKSYEDLPLFLNAELVAQVLGISQAGAYDLLHSEGFPVLKIGTRMVVPKEKFRQWVERNTRPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBT2</accession>
    <name>R6YBT2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fructose-1 6-bisphosphate aldolase class II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00935</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28734">
        <property type="protein sequence ID" value="CDD28734"/>
        <property type="gene ID" value="BN815_00935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004332">
        <property type="term" value="F:fructose-bisphosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030388">
        <property type="term" value="P:fructose 1,6-bisphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00947">
        <property type="entry name" value="TBP_aldolase_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011289">
        <property type="entry name" value="Fruc_bis_ald_class-2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001359">
        <property type="entry name" value="F_bP_aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00167">
        <property type="entry name" value="cbbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01859">
        <property type="entry name" value="fruc_bis_ald"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00806">
        <property type="entry name" value="ALDOLASE_CLASS_II_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="208"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="229"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="287" mass="30421" checksum="1D99596CDD5331FE" modified="2013-07-24" version="1">MLVSAKEMLTKAKAGKYAVGQFNINNLEWTKAILLTAQECNSPVILGVSEGAGKYMCGFNTVAGMVNGMLKTLNITVPVALHLDHGSYDAALQAMEDGFSSVMFDGSHYGIEENIEKTKEIIRIANEKGISVEAEVGAIGGEEDGVIGGGEVADPDECKMIADLGVTMLAAGIGNIHGVYPENWQGLNFEVLAKIQEKTGTMPLVLHGGTGIPAEMVKKAITLGVSKVNVNTECQLAFAAATRKYIEDGKDQQGKGFDPRKLLAPGVEAIKETVKEKMELFGSVGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCJ3</accession>
    <name>R6YCJ3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01017</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28994">
        <property type="protein sequence ID" value="CDD28994"/>
        <property type="gene ID" value="BN815_01017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="24"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="277" mass="30131" checksum="A0B710428CFD6E7A" modified="2013-07-24" version="1">MKDTQNFTAQRLPNGVTEITDLSGVHCFLVEGRDKALLIDTMTGLRGLPAFVATLTDLPVEVALTHGHMDHAGGVFEFGRCYIHPADIPMLDGRTLPARVGYVRGQLPPGEAPEASAFVPDGPVEFVPLKAGDKLDLGGRALEVLHVPGHTRGSLCYLDTASGDFFAGDACNNNTLLMMDVSATIEEYLGALLALKERQGDIRRFYLFHGPSLQDKSCIDDNIQCCRDILAGTDDRVPVDFLGRPGYLAKERTPGTFSRKDGRFGNVVYNPQQVRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCN8</accession>
    <name>R6YCN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000440">
        <property type="protein sequence ID" value="CDD31665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31665">
        <property type="protein sequence ID" value="CDD31665"/>
        <property type="gene ID" value="BN815_00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="44" mass="4978" checksum="B5A79492C3EF1737" modified="2013-07-24" version="1">MRSIIYAAYSKDLSVKTTTAKIQMMKQGKYVGGYAPYGQLLLCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCR1</accession>
    <name>R6YCR1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Alpha-galactosidase</fullName>
            <ecNumber evidence="2 5">3.2.1.22</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01034</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Hydrolysis of terminal, non-reducing alpha-D-galactose residues in alpha-D-galactosides, including galactose oligosaccharides, galactomannans and galactolipids.</text>
            <dbReference type="EC" id="3.2.1.22"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glycosyl hydrolase.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.22" evidence="2 5"/>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29029">
        <property type="protein sequence ID" value="CDD29029"/>
        <property type="gene ID" value="BN815_01034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052692">
        <property type="term" value="F:raffinose alpha-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14791">
        <property type="entry name" value="GH36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038417">
        <property type="entry name" value="Alpga-gal_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000111">
        <property type="entry name" value="Glyco_hydro_27/36_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002252">
        <property type="entry name" value="Glyco_hydro_36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031705">
        <property type="entry name" value="Glyco_hydro_36_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031704">
        <property type="entry name" value="Glyco_hydro_36_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16874">
        <property type="entry name" value="Glyco_hydro_36C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16875">
        <property type="entry name" value="Glyco_hydro_36N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005536">
        <property type="entry name" value="Agal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00743">
        <property type="entry name" value="GLHYDRLASE36"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00512">
        <property type="entry name" value="ALPHA_GALACTOSIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_36N" evidence="9">
        <location>
            <begin position="29"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_36C" evidence="8">
        <location>
            <begin position="645"/>
            <end position="714"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="367"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="477"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="479"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="549"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="444"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="527"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="549"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR005536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR005536-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR005536-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="727" mass="82485" checksum="2D7803C98386B3AF" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD40</accession>
    <name>R6YD40_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Prephenate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01083</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000131">
        <property type="protein sequence ID" value="CDD29194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29194">
        <property type="protein sequence ID" value="CDD29194"/>
        <property type="gene ID" value="BN815_01083"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="131"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="175" mass="19359" checksum="1085939D16A90A12" modified="2013-07-24" version="1">MEELSQNAPYQFVAGHPMAGKEQSGFAASDPSIFIGASYILVPGKASPQAVAVVEGLARQMGFGRVVKVTAQEHDRNIAYTSQVPHVLACAYVLSPRCREHQGFSAGSYRDVSRVANINDALWSRLFLDNRQCLVEELDELQRNLGRFRQAVDQADEEELRRLLQAAAQVKREVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDS5</accession>
    <name>R6YDS5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HAMP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01154</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29439">
        <property type="protein sequence ID" value="CDD29439"/>
        <property type="gene ID" value="BN815_01154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010559">
        <property type="entry name" value="Sig_transdc_His_kin_internal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06580">
        <property type="entry name" value="His_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="302"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="581" mass="65570" checksum="39A101DF9AC7CAB5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF29</accession>
    <name>R6YF29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000023">
        <property type="protein sequence ID" value="CDD27206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27206">
        <property type="protein sequence ID" value="CDD27206"/>
        <property type="gene ID" value="BN815_00540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="64" mass="7346" checksum="F4062A51A6A81D5E" modified="2013-07-24" version="1">MFSLSDCDFIIGANPAANILAIQKNIKFLTEFWSFCETMVMILPFLHNVLIFACLLDRYNGKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFQ0</accession>
    <name>R6YFQ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase aldo/keto reductase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00622</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000038">
        <property type="protein sequence ID" value="CDD27416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27416">
        <property type="protein sequence ID" value="CDD27416"/>
        <property type="gene ID" value="BN815_00622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="2"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="10840" checksum="B1B214EA751AA672" modified="2013-07-24" version="1">MEEVVSIAKAHNVHPAIICLKWAVQRGQIPIPFSIHENEYVSNLQSTVEDPLTDEEMETLRKADKNCRLIKGQVFLWPGATSWHDLWDEDGAITQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFY7</accession>
    <name>R6YFY7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27481">
        <property type="protein sequence ID" value="CDD27481"/>
        <property type="gene ID" value="BN815_00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="42677" checksum="4AEBF3BFF24CE697" modified="2013-07-24" version="1">MEEHLHLCFGVVAKVLDLCSRKSVTDQQLITGLFDCFSSQRRCGEVPKSSCGKYINCLRNDPITGNADACSVSLPVLTKKVDQFVKKLMDPDKIAVALLVLLDILRQNPDARNINRAVFMECFPADWWEKARRQYKLHFSQVLSRVLMYVVRSGVPNRSGKGCIGFITAEYIGSLRKKYEGEYQLSQDGNFVELPFLRLYDAFIEELDRRQVVRFLLLVNTSRAFTFSCVEDHMDFAMEWNPFQDETINIMDGFTGEKIQKFLREFDAYHNFLACSCNAEWLPKEKIGDKWGNVDVQCYANGVENRSPVLGREACVSVLIPHFSVGEKGWKDFAQQTFHYREKLLNIYLELACHASRLGKIPIYEERKALGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGJ0</accession>
    <name>R6YGJ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000261">
        <property type="protein sequence ID" value="CDD30489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30489">
        <property type="protein sequence ID" value="CDD30489"/>
        <property type="gene ID" value="BN815_01705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="19378" checksum="11CBFC4C53D5EA3D" modified="2013-07-24" version="1">MPLHHALDVEPVSEKALYVHESDLADPSQADVPVASKAQGKPLDRRERLQLELRSQPEDNVRVYIPLDINENAILRRLHHIFWKYGEVSEANEAPFCSEVETLVSQVEIYDQVWFVREGDSGNHHSGKATAIVKEMCLWLVEHPGCGERFPMDLVEELRREYQLCFDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGZ6</accession>
    <name>R6YGZ6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SCP2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30629">
        <property type="protein sequence ID" value="CDD30629"/>
        <property type="gene ID" value="BN815_01840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039543">
        <property type="entry name" value="POX18/UbiT/NSL-TP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003033">
        <property type="entry name" value="SCP2_sterol-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10094">
        <property type="entry name" value="PTHR10094"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02036">
        <property type="entry name" value="SCP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SCP2" evidence="1">
        <location>
            <begin position="4"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11891" checksum="C52B100F65A91E16" modified="2013-07-24" version="1">MTFQELFQQVKSRFLGADVSQVSDPTRIQINLTGQAAGTFYVEMKGGHLAIEPYEYHDRDVEITISDENFQKLIDGKLDPVAAFTFGKLKAQGDLGKALELKKLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHA4</accession>
    <name>R6YHA4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific recombinase phage integrase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01963</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30759">
        <property type="protein sequence ID" value="CDD30759"/>
        <property type="gene ID" value="BN815_01963"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="23101" checksum="8E5E67B2C5253022" modified="2013-07-24" version="1">MRRGECCGLRWKDVDFSEKTIHICRNVVKVTGEDILVKEPKTAAGDRYVYFSLEMASLLKEYRSFCQGELELHEGRELTLEDYIFRRHGENLPMTPSTFTWRFKLILKKHNLPLDLNVHSLRHTAASLMISGGADVATVSGLLGHSQVSTIFKSSEKSGVSRSETGVFNSERFSGLTVLCGQPYTHAFDEKKREVSAQMQGRVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHK0</accession>
    <name>R6YHK0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30874">
        <property type="protein sequence ID" value="CDD30874"/>
        <property type="gene ID" value="BN815_00177"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15376" checksum="67511D7E55970C56" modified="2013-07-24" version="1">MDFIKIGAEDFEGLMVLQTAYKAEIGEAAPTSAEFESLKEAIEKGQIHFYGCRCDNALVACCSICYTYSTFHYGKAGVFEDFYIQPKYRHQGIARKLVSFAYEQSGVGSLTVGCADCDLPMYQSLGFRIPLGNMLAFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHW9</accession>
    <name>R6YHW9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoid-associated protein BN815_00062</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00062</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YbaB/EbfC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28151">
        <property type="protein sequence ID" value="CDD28151"/>
        <property type="gene ID" value="BN815_00062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043590">
        <property type="term" value="C:bacterial nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1310.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00274">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036894">
        <property type="entry name" value="YbaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004401">
        <property type="entry name" value="YbaB/EbfC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33449">
        <property type="entry name" value="PTHR33449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02575">
        <property type="entry name" value="YbaB_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004555">
        <property type="entry name" value="UCP004555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82607">
        <property type="entry name" value="SSF82607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00103">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="14"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="12267" checksum="5BF35C476FAD8D9A" modified="2013-07-24" version="1">MKARLPQGYGGGGAANLQQLARQAQKMQEQMEAVSAELEEKEYTATAGGDAVKAVVTGKMEVKSVEIKPEVIDPEDAEMLGDLVTAAVNEALRAASQEKEERMSALSGGMNIPGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI65</accession>
    <name>R6YI65_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02237</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31084">
        <property type="protein sequence ID" value="CDD31084"/>
        <property type="gene ID" value="BN815_02237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="6668" checksum="A5A2741FC4990916" modified="2013-07-24" version="1">MPQTEIMLEPPELIKGSVTPVMGSTSVAPNTFKAVWNSSIPAAAQAAMEKKVERLRVTSLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIV8</accession>
    <name>R6YIV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LL-diaminopimelate aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000412">
        <property type="protein sequence ID" value="CDD31359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31359">
        <property type="protein sequence ID" value="CDD31359"/>
        <property type="gene ID" value="BN815_00291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019942">
        <property type="entry name" value="DapL/ALD1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43144">
        <property type="entry name" value="PTHR43144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8471" checksum="346B98D83A4DF0F2" modified="2013-07-24" version="1">MGVWFTGGTNSPYIWLKCPDGMGSWEYFDYLLHNAEIVGTPGEGFGKNGEGYFRLTAFGDAQKTVEAMERIQGLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ95</accession>
    <name>R6YJ95_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">50S ribosomal protein L4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplD</name>
        <name evidence="8" type="ORF">BN815_00366</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Forms part of the polypeptide exit tunnel.</text>
    </comment>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 6">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31489">
        <property type="protein sequence ID" value="CDD31489"/>
        <property type="gene ID" value="BN815_00366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01328_B">
        <property type="entry name" value="Ribosomal_L4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013005">
        <property type="entry name" value="Ribosomal_uL4/L1e"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10746">
        <property type="entry name" value="PTHR10746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03953">
        <property type="entry name" value="rplD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="45"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="22698" checksum="7DA19C77D7569AFD" modified="2013-07-24" version="1">MPSIAVLNMQGQEVGQQELSEAVFGIEPNVSVMNDMVKNYLANQRQGTQSALTRSEVSGGGKKPWRQKGTGRARQGSTRAPQWTHGGIVFAPKPREYRYALNKKVRRLAMKSALSSKVRDNEMVVIDQITADSYKTKTIADMLKAVGSEKKALIVLSTMDEKVIASARNIPGVKTAQVNTLNVYDILGADKFIVVKDAVAKIEEVYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJH3</accession>
    <name>R6YJH3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">HTH merR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00074</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28706">
        <property type="protein sequence ID" value="CDD28706"/>
        <property type="gene ID" value="BN815_00074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036244">
        <property type="entry name" value="TipA-like_antibiotic-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012925">
        <property type="entry name" value="TipAS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07739">
        <property type="entry name" value="TipAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89082">
        <property type="entry name" value="SSF89082"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0010">Activator</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="5">
        <location>
            <begin position="5"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="29780" checksum="F9627F6CA9EF74E1" modified="2013-07-24" version="1">MSDRRMTVHEVADLTGITIRTLHYYDEIGLLKPTIVTDSKYRLYTDDDLSRLQEILFFREVGFALKEIKSLLASPNYDRTKALKRHLDVLQAQKERIDALISLIKTEIEGNPVSSFAPFSDTKVLELKEKYRSEVLERWGDTHSFKEYEAAFLSQPKEGQRNQLERFLSVSKDTFEKLARFQNQSPACQEVQQIVKEWQQYISESFYKCDNQILLYLGQLYISDDRFSNYINGFGSGNLASFFSEAINIFCAKDKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJI6</accession>
    <name>R6YJI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00933</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28721">
        <property type="protein sequence ID" value="CDD28721"/>
        <property type="gene ID" value="BN815_00933"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="98" mass="10801" checksum="A40A1A57B62CD386" modified="2013-07-24" version="1">MRLLPQAREGEEFLPAVEKFTLEFPQELLPQVASRFDGALALEHLGKARLRATGKAPLDGEFFGWLFSMGNAVRLTSPKAAAEQLREQAKAVGKAYKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNH3</accession>
    <name>R6YNH3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01396</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30151">
        <property type="protein sequence ID" value="CDD30151"/>
        <property type="gene ID" value="BN815_01396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9848" checksum="A6F7818BBF36F349" modified="2013-07-24" version="1">MALQNTLKALADPIRREILNLLKQGKLSAGEIGEHFPVTAASISRHLSVLKEADLIRDQREGKFIYYQLNTSVLEEVMLWLSQLKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNJ4</accession>
    <name>R6YNJ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01421</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000200">
        <property type="protein sequence ID" value="CDD30176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30176">
        <property type="protein sequence ID" value="CDD30176"/>
        <property type="gene ID" value="BN815_01421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011579">
        <property type="entry name" value="ATPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004256">
        <property type="entry name" value="DUF234_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01637">
        <property type="entry name" value="ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03008">
        <property type="entry name" value="DUF234"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase_2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="DUF234" evidence="2">
        <location>
            <begin position="316"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="467" mass="54165" checksum="1C4DC403BAE2E224" modified="2013-07-24" version="1">MEKLIDRESELETLQSEYARNGSALVVLYGRRRVGKTTLISEFIKDKNALFFLASEESETQNRHAFKEKAAEFMNSDLLRNADVKSWDVIFKALMDTTFASKPVIVIDEFQYIGKSNPAFPSIFQRIWEEILKDKQVMVILCGSLISMMESQTLSYNSPLYGRRTAQIRLTQIPFRYYGEFFPHKSRRELIEMYSVTGGVPKYIELFAESKDIYKEIERNVLNRSGYLYDEPNFLLQQEVSEVGSYFSVIKAIAAGNSKLSAIASMLEVKATSLTKYLKTLMDLDILEREVPITENNPEKSKKGLYKIKDNYIRFWFAFVYPNRSFIESGNSRIVMDKIHKGLITNHTAYVYEDVCRERMWELNVVETWPFQFSKIGRWWDAHDEIDIAAMDPDGENLILGECKFWKEPVGVSVLQTLENKSIRVEWKKATRHVWYVLFSASGFTEELKQSAASRPDLLLCDDSENN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNN6</accession>
    <name>R6YNN6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01469</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30226">
        <property type="protein sequence ID" value="CDD30226"/>
        <property type="gene ID" value="BN815_01469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="24773" checksum="A5F839CB52087258" modified="2013-07-24" version="1">MRPLFSLGPRLALCAALVREGSPLCDVGTDHAYLPIWLLKTGKIPRALACDINPGPLEAARRDGAKYEVGEELSFRLSDGLRAVLPQEAGDVVLAGMGGELILRIVGETPWLRDGAKRLVLQPMSSVAELRRGLAELGFQVLQEQAVVDGGKVYSAFSAAYQGAPVENGPLYPYLGKLIPGAPHVEDYARKVLRGLEAQRQGALHQGDSQRAAQLEELLSQIGQIYLPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNP0</accession>
    <name>R6YNP0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Bacterial Ig-like domain group 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01474</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30231">
        <property type="protein sequence ID" value="CDD30231"/>
        <property type="gene ID" value="BN815_01474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019835">
        <property type="term" value="P:cytolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51781">
        <property type="entry name" value="SH3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SH3b" evidence="3">
        <location>
            <begin position="175"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="328" mass="35724" checksum="64F690248609A463" modified="2013-07-24" version="1">MFTRSVSFGRAGTYTVRAYSQTSGGSWSTDYCEFTVVVTSSDIHSSTTTTESRRVSTEGLNIIADFEGSVPEIEDDVLASGNPTVGYGYVVPVNTTFYNNLTTSELFAQLVQIANETYSPAVENFRSTYNIKMNQAHFDALTSFVFNCGVGTLSSDYGFRRALLNAVDVSGFSGSATGTVNVDDVDLGAAPVYSSASTASQQVTTLDIGATVTVTSVSSTRTSTKQEVWYQVTTSGGQVGWMPAGYVQLSGSWTRDLAWADSTVLANNFLQWNKAGGVQPGLVYRRLAECNIFFFGDYEKAMKANGYWGINYYGFNFPDECAQYDRRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNR1</accession>
    <name>R6YNR1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01494</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30251">
        <property type="protein sequence ID" value="CDD30251"/>
        <property type="gene ID" value="BN815_01494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="26341" checksum="486CF9E82489838D" modified="2013-07-24" version="1">MISYACYTDRGGRPCNEDTVEICRQDSQRLCAVLADGLGGHGGGKAASSAAVQTILQGWQGKTSLGELRQLAEQANRQVLSLQTKSCRMKTTVVVLIVEGARWQWAYAGDSRLYHFVEGNLLWQTKDHSSSQIAVLLGQIAPEQIRFHEDRSRIYRALGQDEATQVDAGEEAFSPGKHQFLLCSDGFWEYILEGEMEGQLKASATPQEWLDRMCSLLRERVPDNNDNNSAAAVWVEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP24</accession>
    <name>R6YP24_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavin-dependent thymidylate synthase</fullName>
            <shortName evidence="1">FDTS</shortName>
            <ecNumber evidence="1">2.1.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">FAD-dependent thymidylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Thymidylate synthase ThyX</fullName>
            <shortName evidence="1">TS</shortName>
            <shortName evidence="1">TSase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">thyX</name>
        <name evidence="2" type="ORF">BN815_01588</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + dUMP + H(+) + NADPH = (6S)-5,6,7,8-tetrahydrofolate + dTMP + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:29043"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="2.1.1.148"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="1">Binds 4 FAD per tetramer. Each FAD binding site is formed by three monomers.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; dTTP biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the thymidylate synthase ThyX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.148" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000231">
        <property type="protein sequence ID" value="CDD30361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30361">
        <property type="protein sequence ID" value="CDD30361"/>
        <property type="gene ID" value="BN815_01588"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00575"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050797">
        <property type="term" value="F:thymidylate synthase (FAD) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006231">
        <property type="term" value="P:dTMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01408">
        <property type="entry name" value="ThyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003669">
        <property type="entry name" value="Thymidylate_synthase_ThyX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036098">
        <property type="entry name" value="Thymidylate_synthase_ThyX_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34934">
        <property type="entry name" value="PTHR34934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02511">
        <property type="entry name" value="Thy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69796">
        <property type="entry name" value="SSF69796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02170">
        <property type="entry name" value="thyX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51331">
        <property type="entry name" value="THYX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Involved in ionization of N3 of dUMP, leading to its activation" evidence="1">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="76"/>
            <end position="79"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="79"/>
            <end position="81"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="89"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="181"/>
            <end position="183"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <note>ligand shared between neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>dUMP</name>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="28345" checksum="C24E2AF0259EB03B" modified="2013-07-24" version="1">MQVKLLAYTPEPEKTVACAAKLCYAAADIDTVYEGLTEEKTASFLEMLHSIGHESPIEHASFTFGIEGVSRSLLAQITRHRIASFSVQSQRYVKENGFEFVLPPEIAAVPEAKEEFLRAMEEDQKHYERLTELLKERHFQAFLAAGETEKAAARKAEKKAIEDARFVLPNACTTKMICTMNARSLLNFFSHRCCNRAQWEIRELATQMLQEVKAVAPHLFEKAGPPCLRGACPEGKMSCGQMAQVREKFQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPP1</accession>
    <name>R6YPP1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30521">
        <property type="protein sequence ID" value="CDD30521"/>
        <property type="gene ID" value="BN815_01734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437705" evidence="1">
        <location>
            <begin position="31"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="231" mass="26474" checksum="DA32ACFC318C555F" modified="2013-07-24" version="1">MKKNTRKNLRQLLTLCLCGLLLLLATGCQAQEADISLPAGEELEALESAVGYELDTLLDTLGLSEEDLTEPDLTDLVPGLRDTNRYVELDTIRLRERIQINSDPAGTEYYGFSQYYLLYYPEKEGEDLVAPARALYDTLLETYGTPQSSIQDNMEPVTEEDWEKLSSGDETNLGDSWQVDEYTVLYFYVLLDGPYRRIELMYDWPELYQTRMVNQGYLAREDAPLYLEGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQF4</accession>
    <name>R6YQF4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosylaminoimidazole-succinocarboxamide synthase</fullName>
            <ecNumber evidence="8">6.3.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">SAICAR synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">purC</name>
        <name evidence="10" type="ORF">BN815_00165</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + ATP + L-aspartate = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22628"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the SAICAR synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.6" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30816">
        <property type="protein sequence ID" value="CDD30816"/>
        <property type="gene ID" value="BN815_00165"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004639">
        <property type="term" value="F:phosphoribosylaminoimidazolesuccinocarboxamide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00137">
        <property type="entry name" value="SAICAR_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028923">
        <property type="entry name" value="SAICAR_synt/ADE2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001636">
        <property type="entry name" value="SAICAR_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018236">
        <property type="entry name" value="SAICAR_synthetase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01259">
        <property type="entry name" value="SAICAR_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00081">
        <property type="entry name" value="purC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01058">
        <property type="entry name" value="SAICAR_SYNTHETASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAICAR_synt" evidence="9">
        <location>
            <begin position="4"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="283" mass="32620" checksum="298E5C3964A500BE" modified="2013-07-24" version="1">MKKIGSGKVREIYEVSDKELVIYTTDRVSAFDVILPTPVPEKGRVLNQLSLFWFDLTKDIVKNHLVSADPKDMPEEFSKEEYKDRVMLVKKLKMLPYEFIIRGYMFGSMWKAYQAGEPFCGQVITGDYQLAQKLEKPILTPSTKATEGHDEYSVTHEGLVKDLGEELAQKLEDTCLRLFEKCYDYAYERGIIIADTKLEFGLDENGELVLADEVFTPDSSRFWNRDEYQVGTSPLSYDKQYLRDWLIENKLDGVTPAPQLPANVVAKTQEKYLECLERLVPQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQQ4</accession>
    <name>R6YQQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative mannose-6-phosphate isomerase class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02063</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000339">
        <property type="protein sequence ID" value="CDD30901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30901">
        <property type="protein sequence ID" value="CDD30901"/>
        <property type="gene ID" value="BN815_02063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7147" checksum="6A58FC829CC1D152" modified="2013-07-24" version="1">MPRDGSVHVLNLVEGEEARITSPTGNFQPFTVHYAQTFILPEGAGDYRVGSPQGAPIRVILARVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQT3</accession>
    <name>R6YQT3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02088</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000344">
        <property type="protein sequence ID" value="CDD30926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30926">
        <property type="protein sequence ID" value="CDD30926"/>
        <property type="gene ID" value="BN815_02088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="97" mass="10561" checksum="324BE2CE228435A6" modified="2013-07-24" version="1">MRAYVLERFLLDREETEEGIIPLAQKSVEKLTGIPRETLAAADRPSGCTAATAVLDKKVLLILSLCKGLSVTIPVAEAPAIQTVRQLAEALYERVNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRI6</accession>
    <name>R6YRI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31201">
        <property type="protein sequence ID" value="CDD31201"/>
        <property type="gene ID" value="BN815_02345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012963">
        <property type="entry name" value="DUF1700"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08006">
        <property type="entry name" value="DUF1700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="16029" checksum="EABFF4BDC26C859A" modified="2013-07-24" version="1">MKEEYIRRVGRLLALPGKQKREVLRDLEEIFASGAEHGETEQGVIQRLGTPEEYAAGVELSLGKPRPGGKLAGLVLSCVACVVCFGLFWAAQRPWVPQEAIGFAQGSTSIQVEGAADLSPVLLVLGVAALALAVFFLWKLLRGRRSDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRM3</accession>
    <name>R6YRM3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sporulation protein YunB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31241">
        <property type="protein sequence ID" value="CDD31241"/>
        <property type="gene ID" value="BN815_02385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014197">
        <property type="entry name" value="Sporulation_prot_YunB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09560">
        <property type="entry name" value="Spore_YunB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="188" mass="19545" checksum="A50698BFDB59E514" modified="2013-07-24" version="1">MAAALFTGGTALSEWGLGSISEELTQEAARAYVLAQVNQAVEEALAQPRPFVTIERDGEGEPVAVQADTAALNELRLQVLGTLGESLNGSVTVEVPVGSLTGVALLNGRGFPVPLTLGMEGSADLSFQTEFVSAGINQSCHRVTMVVKAQGFSQSRRFETQVEVETSTVLAETVLVGAVPEGAVLKTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSE6</accession>
    <name>R6YSE6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycoside hydrolase family 31</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00361</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31476">
        <property type="protein sequence ID" value="CDD31476"/>
        <property type="gene ID" value="BN815_00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000322">
        <property type="entry name" value="Glyco_hydro_31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025887">
        <property type="entry name" value="Glyco_hydro_31_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13802">
        <property type="entry name" value="Gal_mutarotas_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01055">
        <property type="entry name" value="Glyco_hydro_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gal_mutarotas_2" evidence="3">
        <location>
            <begin position="157"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="771" mass="87195" checksum="821BCA699E3857A9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9F0</accession>
    <name>R6Z9F0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative membrane-bound protein LytR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00505</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27112">
        <property type="protein sequence ID" value="CDD27112"/>
        <property type="gene ID" value="BN815_00505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="3">
        <location>
            <begin position="100"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="37396" checksum="E71F5FCFE5C0FAC2" modified="2013-07-24" version="1">MKFRVDVRVLKGTAAILAAVLVLLAGMLLLQRWENTQDAPVFSSGEASSVEADVPVDGREITYYNGTAYARREDLETVLLLGVDKFEGETPDGYVNNQQADFLLLLVMDKQNETCTPIQLNRDTMTQIQILGVTGEPAGTFTGQLALAHTYGSGEEDSCENTVLAVENLLYGVGIDHYVSLTMDGVALLNDLVGGVTVEVLDDFSAIDDSLVQGETVTLQGQRALTYVRSRGGMEDSSNLHRMERQRQYLSALQQQLKAAVQQEDGFTLDALLQLNEYMVSDCTVDQLSDLGDSLAAYQVSDILTTPGDAQEGEEFMEFTVDEDALQQLVMDVFYEPVEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9J1</accession>
    <name>R6Z9J1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00525</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000018">
        <property type="protein sequence ID" value="CDD27157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27157">
        <property type="protein sequence ID" value="CDD27157"/>
        <property type="gene ID" value="BN815_00525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="2"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="313"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="323"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="355" mass="39052" checksum="B540E9CFF4ABEE0E" modified="2013-07-24" version="1">MIEVKNLTKRYGQNLALDRVSFKIEEGTIVGFLGPNGAGKSTAMNIITGYLSATSGEVTVSGKNTLEEPGEVKKMIGYLPELPPLYMDMTVKEYLYFMYELKKAKLPREQHIQEICRLVKIENVFNRLIANLSKGYKQRVGIAQALIGNPPVLILDEPTVGLDPKQIIEIRTLIKNLGRNHTVILSSHILPEVQAVCERILVINNGRIVADGATDTLAHDLSPDHRLILRAEGPEKEMVHALQNVPGVVDAYSLGEKEKGVFEVSVESTPDNDIRRDVFALMARKGWPMLALKNTDLTLEDLFLQLTSTDAALLPSQEDEDGGAPQLDPDQDLDLEAGEDGAPETDEDSEKGGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9R3</accession>
    <name>R6Z9R3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000026">
        <property type="protein sequence ID" value="CDD27222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27222">
        <property type="protein sequence ID" value="CDD27222"/>
        <property type="gene ID" value="BN815_00545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="12083" checksum="E8FACA327A2EDCBC" modified="2013-07-24" version="1">MDDLVKLLEETGIPFAYDHFAEGESPDPPFICYLLPQSDNFSADGKVYLKVSSVNIELYTDSKDLSVEQKLEAVLDTHGIFYDKTEVWIESEKLYEVLYSFEMEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAN1</accession>
    <name>R6ZAN1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">BRCT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27497">
        <property type="protein sequence ID" value="CDD27497"/>
        <property type="gene ID" value="BN815_00035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BRCT" evidence="1">
        <location>
            <begin position="18"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="96" mass="11062" checksum="3857651C198B1DA9" modified="2013-07-24" version="1">MEEMRKAYPMGDMVMYERKPSPLAGKTVVITGKLWRFTRKEAHQQLLSRGAIVKRTVTKKTDYLVRGDKPGDKLDKAIALRIPVLSEREFLTMLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB58</accession>
    <name>R6ZB58_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MazG nucleotide pyrophosphohydrolase domain superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27707">
        <property type="protein sequence ID" value="CDD27707"/>
        <property type="gene ID" value="BN815_00048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="42"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="14157" checksum="696D7286F064DCF8" modified="2013-07-24" version="1">MDGNTTVKYLQHYLRQKDLGFLALDSLPPGPQREAQEEQLKHNLFLKLVEEVGEVSRAIFHGQFRGPGEPVKGTLDEELWDVLYYTLCLAEAYGIDMEEAIREKERLNNLRFHDEHPFEAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDR1</accession>
    <name>R6ZDR1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6017 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00912</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000099">
        <property type="protein sequence ID" value="CDD28662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28662">
        <property type="protein sequence ID" value="CDD28662"/>
        <property type="gene ID" value="BN815_00912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046059">
        <property type="entry name" value="DUF6017"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19481">
        <property type="entry name" value="DUF6017"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6017" evidence="1">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="14680" checksum="1DE02657222ECC4C" modified="2013-07-24" version="1">MSLTEMESYRDLILENIEYDHLCREFTSCRENLDEIVELMVETVCAKRKTTRITGSDFPHEVVRSRFLKLDSSHIEFVMECLHNNTTQVRNMKQYLLTVLFNAPTTMSNHYTAQVNHDLYGEAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEB9</accession>
    <name>R6ZEB9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Beta_helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28862">
        <property type="protein sequence ID" value="CDD28862"/>
        <property type="gene ID" value="BN815_00989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_helix" evidence="1">
        <location>
            <begin position="236"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="661" mass="74338" checksum="C6C26B092F0BD458" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEW9</accession>
    <name>R6ZEW9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Dockerin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01033</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29027">
        <property type="protein sequence ID" value="CDD29027"/>
        <property type="gene ID" value="BN815_01033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016134">
        <property type="entry name" value="Dockerin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036439">
        <property type="entry name" value="Dockerin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63446">
        <property type="entry name" value="SSF63446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51766">
        <property type="entry name" value="DOCKERIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dockerin" evidence="2">
        <location>
            <begin position="454"/>
            <end position="515"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="325"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="332"/>
            <end position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="515" mass="53360" checksum="6A4366BBD4207997" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF47</accession>
    <name>R6ZF47_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Carboxynorspermidine/carboxyspermidine decarboxylase</fullName>
            <ecNumber evidence="5">4.1.1.96</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00082</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>carboxynorspermidine + H(+) = CO2 + norspermidine</text>
            <dbReference type="Rhea" id="RHEA:34099"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57920"/>
            <dbReference type="ChEBI" id="CHEBI:65070"/>
            <dbReference type="EC" id="4.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>carboxyspermidine + H(+) = CO2 + spermidine</text>
            <dbReference type="Rhea" id="RHEA:34095"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:65072"/>
            <dbReference type="EC" id="4.1.1.96"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.96" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29112">
        <property type="protein sequence ID" value="CDD29112"/>
        <property type="gene ID" value="BN815_00082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045312">
        <property type="term" value="P:nor-spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06829">
        <property type="entry name" value="PLPDE_III_CANSDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005730">
        <property type="entry name" value="Nsp_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43727:SF1">
        <property type="entry name" value="PTHR43727:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038941">
        <property type="entry name" value="NspC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01047">
        <property type="entry name" value="nspC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="10">
        <location>
            <begin position="152"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR038941-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD29112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="373" mass="41648" checksum="510DA9DAB8E263CB" modified="2013-07-24" version="1">MTQLNTPYFLVDEGLLKKNLEVLRQVQQEAGCKILLAQKAFSMFACYPLISRYLAGTTASGLYEARLGREEFPGEVHVFSPAYREEEFQALLGLADHFVFNSPSQLRKYAQRAKEAGKQVGLRVNPECSTQEGHAIYDPCAPGSRLGTTLANFDESLLPLLDGLHFHTLCEQNSDDLETTAHAFEEKFGQYLSRMRWLNLGGGHHITRADYDIPRLVRVVKHFREKYGLEVYLEPGEAVVLNAGFLVSTVLEIVHNGMDIAILDTSAACHMPDVLEMPYRPPVKDSGKAGEKPYTYRLTGPTCLAGDVIGDYSFDHPLAEGSQIVLEDMALYTMVKTNTFNGMPLPTIALRHEDGTVDVVKEFGYEDFKSRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHI2</accession>
    <name>R6ZHI2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Dihydroorotase</fullName>
            <shortName evidence="5">DHOase</shortName>
            <ecNumber evidence="5">3.5.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrC</name>
        <name evidence="7" type="ORF">BN815_01308</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:24296"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="EC" id="3.5.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.3" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29922">
        <property type="protein sequence ID" value="CDD29922"/>
        <property type="gene ID" value="BN815_01308"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01317">
        <property type="entry name" value="DHOase_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00220_B">
        <property type="entry name" value="PyrC_classI_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004722">
        <property type="entry name" value="DHOase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002195">
        <property type="entry name" value="Dihydroorotase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00482">
        <property type="entry name" value="DIHYDROOROTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00483">
        <property type="entry name" value="DIHYDROOROTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="6">
        <location>
            <begin position="53"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="62"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="421" mass="44413" checksum="6761E962F481765E" modified="2013-07-24" version="1">MPMLIQNARVIDPSQGLDEVMDLLLEDGKIAQLGSNLPAQNAQVIDGTGLVAAPGLVDMHVHLRDPGLTHKEDVYSGCRAAAAGGVTSLLAMPNTKPAMDSPETVRALLERAQTADAAVYTAACVTKDLQGEELADLAALKEAGAIALSDDGRPVVNTRRLLEALEQAPSLGLTVTAHCEDLYLASGGLMHEGEVSRKLGVPGIPAAAEDCGTAREIAAAASIGAPIHICHVSTKGSVALIRDAKARGVQVTAETCPHYLLLTDKALESQDADYRMNPPLREEEDRLALIEGLKDGTLDAIATDHAPHTPQEKADFRKAPNGSIGMETSLAATLTALEGVLTLPQILEKMSTAPARILGIPAGTLQVGANADVVLFDPQREWVVDPEKLHGKSKNTPFKGMKLKGKVALTIFRGRIVYDGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI62</accession>
    <name>R6ZI62_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30137">
        <property type="protein sequence ID" value="CDD30137"/>
        <property type="gene ID" value="BN815_01389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009702">
        <property type="entry name" value="DUF1284"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06935">
        <property type="entry name" value="DUF1284"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="14607" checksum="B7E93E10C40DA2EA" modified="2013-07-24" version="1">MTRLRGHHLFCATLFQGSGYDQAFTAQMERTLAALEAGEDFTLCAGPDSLCAACPNLRPGERCAHGTSDVARRDAAALAAVGFQPGQSLSPSQAGERLRQVTESQWGSVCAGCRWRKAGLCSWGLFQRLRAQRFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIC0</accession>
    <name>R6ZIC0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Predicted acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01440</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30197">
        <property type="protein sequence ID" value="CDD30197"/>
        <property type="gene ID" value="BN815_01440"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041380">
        <property type="entry name" value="Acetyltransf_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025559">
        <property type="entry name" value="Eis_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17668">
        <property type="entry name" value="Acetyltransf_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13530">
        <property type="entry name" value="SCP2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="396" mass="44330" checksum="C14CB78A1922BBC1" modified="2013-07-24" version="1">MPVHRLTEKEELLESDRICSIAFVSPWDREEAVRGLESPDFQPTVSFGHFTEEGQLTASLLLPQFQMRYEGHDVPMVGVGGVASLPEYRYGGAVRQIFHTALEWMWDQGAVFSSLYPFSHSYYRKFGYELCQLVTQYKLPTEALESFSCTCKVRMFQPGEDLAPLQAVYNARLGQYNLAVRREERHWKSLFGKDPAKEMRYTYLLEDAGGPLAYVIFKPEEGEDGKIGNVRELAFAKPEGLPQALGFLYRLGAQYEAFRIALPEDVPLAALLEESYDTAPTWINQPMARVIHVEKALQAKAPGEGRSYTVAVEDQLLPGNNGVFQVSQQGGAVTVEKLPEGAQADLSVDVRVLTQLLTGFLSLEEALYKPGVTLSGNLETLHQAFPKRAAYLTDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIW5</accession>
    <name>R6ZIW5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01623</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30402">
        <property type="protein sequence ID" value="CDD30402"/>
        <property type="gene ID" value="BN815_01623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="27"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="28630" checksum="DDA8A73B40E1AC15" modified="2013-07-24" version="1">MMQLGAQLFTLRDYTQTAKDFAYSMGQVAKMGYKTVQISAIGPIPAQQVREICDENGLQIVLTHTDPNRILNDTEAVIREHDIMGCDYIGIGMMPQKYASPQWLWHFADDYKEAAKKIAAAGKLLMYHNHNIEFQKFDGKLVIDTLLESFAPDELGFTLDTYWVQMGGADVCDWIEKLADRIPCVHLKDMAVKGWEPIMAPVGEGNLPWGKILATLEKCGKTKYLLVEQDVCQESPFTCLEKSYKYLNSLGYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK48</accession>
    <name>R6ZK48_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30832">
        <property type="protein sequence ID" value="CDD30832"/>
        <property type="gene ID" value="BN815_02019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="27"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="31015" checksum="B32F6E4F981D8958" modified="2013-07-24" version="1">MKAAYTGWTWITNREPEAAKNQLKQAFQECKFLGYDTVENFAFIRDYYADDPQALVDLTKECGVDLVNLYGHFTFDVEEAIRIAKEQIDFCAAVGVKWYNCQNAGFGDDGPSERPTNPEMLDKMCYVANTVGAYAKEKGVTLCFHPHYGTCVFWQSDIDYFAEHTNPDYVSFCFDTAHTTLAGMDPAALIRQYGSRVAYMHLKDVDTYALSKAEGRDKMGTFRALGHGTVNFPAVKAALEEVGFDGVLCVELDRPEVCNFHSAEVSRIYLRDVLGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK68</accession>
    <name>R6ZK68_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Argininosuccinate lyase</fullName>
            <shortName evidence="7">ASAL</shortName>
            <ecNumber evidence="3 7">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">argH</name>
        <name evidence="10" type="ORF">BN815_02039</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="3 7"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30852">
        <property type="protein sequence ID" value="CDD30852"/>
        <property type="gene ID" value="BN815_02039"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01359">
        <property type="entry name" value="Argininosuccinate_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029419">
        <property type="entry name" value="Arg_succ_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="PTHR43814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14698">
        <property type="entry name" value="ASL_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00838">
        <property type="entry name" value="argH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="8">
        <location>
            <begin position="6"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C2" evidence="9">
        <location>
            <begin position="363"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF14698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="461" mass="50691" checksum="841064DDEF5CD317" modified="2013-07-24" version="1">MKLWKGRFQKEADPKTNDFNSSISVDSRMYREDIEGSLAHATMLGACGIIEKGESEKIVEGLQGILADLDSGALMIDPDAEDIHTFVEGELTARIGDAGKRLHTARSRNDQVALDVRLTLRKDCAAVQAQLKDFVKVLCHKAEQYAATVMPGYTHMQRAQPITFGHHLMAYAEMLLRDLSRLEDALKRMDVMPLGSGALAGTTYPLDRTITAKLLGFSQISQNSLDGVSDRDFCAEIAFDASLIMVHLSRFCEELVLWCSWEFQFIELDDAFSTGSSIMPQKKNPDIAELIRGKSGRVFGDLMALLSMMKGLPLAYNKDMQEDKEAVFDAVDTLKLCLTPLIPMVETMTVKEDKMRAAAAGGFINATDCADYLVAEKGLPFRDAYKITGELVALCIQKGLTLETLPLEEYQAVCPAFDEGVYGAISLEKCVGGRKVLGGPAPENVKAQAQRVLGLLEKEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKG3</accession>
    <name>R6ZKG3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleic acid-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02106</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000349">
        <property type="protein sequence ID" value="CDD30947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30947">
        <property type="protein sequence ID" value="CDD30947"/>
        <property type="gene ID" value="BN815_02106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427079" evidence="2">
        <location>
            <begin position="31"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="287" mass="30600" checksum="B7EF272669706CE8" modified="2013-07-24" version="1">MKKLIAAFLALCLACSMAACAGGTTSESSTASTSSTSSESSVAEESVASEEPSSSDVSEASSEGSDTAEATVLSHEEYMAAELDTEVTIQAYVQAKQSYYAEQGTATVYLQDQDGAYFAYDMACTQEEYDAMTEGTCIQVTGFKSEWSGEIEIMDGQLDQIVEGDTFVAEPLDATELLGTDELEQHQNEKVSFTGLTVAPSTDANGNEAAFLYNSDGSGTQGDDVYFNVSYNGQTYTFVVESYLCGSDTEVYKAVEALEVGQTIDCEGFLYWYEGANPHITSVTVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKV1</accession>
    <name>R6ZKV1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">1-acyl-sn-glycerol-3-phosphate acyltransferase</fullName>
            <ecNumber evidence="2">2.3.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02220</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 1-acyl-sn-glycero-3-phosphate + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphate + CoA</text>
            <dbReference type="Rhea" id="RHEA:19709"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:58342"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="2.3.1.51"/>
        </reaction>
    </comment>
    <comment type="domain">
        <text evidence="2">The HXXXXD motif is essential for acyltransferase activity and may constitute the binding site for the phosphate moiety of the glycerol-3-phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.51" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000371">
        <property type="protein sequence ID" value="CDD31067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31067">
        <property type="protein sequence ID" value="CDD31067"/>
        <property type="gene ID" value="BN815_02220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003841">
        <property type="term" value="F:1-acylglycerol-3-phosphate O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004552">
        <property type="entry name" value="AGP_acyltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00530">
        <property type="entry name" value="AGP_acyltrn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="2" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="5">
        <location>
            <begin position="49"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="26738" checksum="D934ECB25DEF5002" modified="2013-07-24" version="1">MAVREERDNRPKRKTWLYLVGQIILWWYFHLVFRMKVVGAENVPQEGPVLLCSNHLAKRDPVLLGLCQKRQVFYMAKEELFRNKFLGGLFRMLGAFPVKRGTGGADALEDAYTLLEENGVVGVFIEGHRSKDGRLLKPKTGAALLAYKTKAPVVPVCITAGDGLQPGMFKRTLIRFGKPISAQELHIQDDSSMQLRRASRTIMGRIAQLREESCKELGLPSQLEPAREAPAQEAPHES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKW2</accession>
    <name>R6ZKW2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31082">
        <property type="protein sequence ID" value="CDD31082"/>
        <property type="gene ID" value="BN815_02235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="104" mass="11621" checksum="3B00E5DA8FA2405D" modified="2013-07-24" version="1">MHRPCKATSSKVKVAASISRRGEAASREKPVKNRRRSKGFWSAFHMVSVVEPMVMVSPMFTSFRSSIFFPFTSTPDLEPVSQINQPSSRRSSTAWSRLAEGSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL54</accession>
    <name>R6ZL54_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Redox-sensing transcriptional repressor Rex</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rex</name>
        <name evidence="9" type="ORF">BN815_02326</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transcriptional regulatory Rex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31182">
        <property type="protein sequence ID" value="CDD31182"/>
        <property type="gene ID" value="BN815_02326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051775">
        <property type="term" value="P:response to redox state"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01131">
        <property type="entry name" value="Rex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009718">
        <property type="entry name" value="Rex_DNA-bd_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022876">
        <property type="entry name" value="Tscrpt_rep_Rex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35786">
        <property type="entry name" value="PTHR35786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06971">
        <property type="entry name" value="Put_DNA-bind_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="CoA_binding" evidence="8">
        <location>
            <begin position="81"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="7">
        <location>
            <begin position="18"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="92"/>
            <end position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="221" mass="24549" checksum="80E4957164364A9F" modified="2013-07-24" version="1">MNQKKQNVSMSVIRRLPRYYRFLSELGKNGATRISSKELSEKMGFTASQIRQDFNCFGGFGQQGYGYNVSQLCGEIEKILGIQKRHPCILVGAGNLGKAIAGHMPFEQLGFSLIGVFDNAKRVIGGKISGNEILDYATVEEFYQEHHPVMAILCVPREYVEGVSDELYSLGIHSFWNFSHYDITMKHPDAIVENVHMNDSLMTLSYKLALAEAGDSGQAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLZ4</accession>
    <name>R6ZLZ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00359</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31472">
        <property type="protein sequence ID" value="CDD31472"/>
        <property type="gene ID" value="BN815_00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="ABC transporter" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12489" checksum="C52B6754D9CADEE6" modified="2013-07-24" version="1">MSGGQKQRLCIARALLKKPKILILDDSTSAVDTRTDALIRQGFRKFIPETTKIIIAQRVASVQDADRIILMNNGEIDAIGSHEELMATNQVYREIYTSQNRTNSQGKAGAENG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUS2</accession>
    <name>R6XUS2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00026</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27478">
        <property type="protein sequence ID" value="CDD27478"/>
        <property type="gene ID" value="BN815_00026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="541" mass="62107" checksum="16918BA1991586DB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV61</accession>
    <name>R6XV61_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metallopeptidase family M24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27613">
        <property type="protein sequence ID" value="CDD27613"/>
        <property type="gene ID" value="BN815_00672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008235">
        <property type="term" value="F:metalloexopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000587">
        <property type="entry name" value="Creatinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01321">
        <property type="entry name" value="Creatinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Creatinase_N" evidence="2">
        <location>
            <begin position="19"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M24" evidence="1">
        <location>
            <begin position="142"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="359" mass="39922" checksum="2D482A677190295D" modified="2013-07-24" version="1">MKNPVERLADTLIHGDSQKAALVFSEKNRRYFTQFPATDGALLVTAEEAYLLMDFRYEEAARYKAQYCTVVGFDSLMGKLQELLQKHGVQEVYMECEQLSVAQARRFEEAFQKVGVQAVLDSTLDNAIRDQRMIKSPEEVKKIEASQEITDAAFQHILPYIKEGVTERDLALEIEFFMRKQGAENVAFELIVAAGKNGSQCHAVPSDNQVHKGDFITMDTGALLDGYHSDMTRTVALGQVSDEQKAVYDTVLKAHLAVIDYVKPGVVCSDVDKVARDIIEKDYPGTFGHGLGHGVGFEIHEWPRFGRGDSTLAAEGMVVTDEPGIYLPAKYGVRIEDMLLVTADGCRSLTKSPKELICL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVV5</accession>
    <name>R6XVV5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Gln-synt_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00727</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000067">
        <property type="protein sequence ID" value="CDD27883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27883">
        <property type="protein sequence ID" value="CDD27883"/>
        <property type="gene ID" value="BN815_00727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040577">
        <property type="entry name" value="Gln-synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022147">
        <property type="entry name" value="GSIII_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18318">
        <property type="entry name" value="Gln-synt_C-ter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12437">
        <property type="entry name" value="GSIII_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="2">
        <location>
            <begin position="172"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="705" mass="78372" checksum="4971A33C6BE2D55B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>R6XX09</accession>
    <name>R6XX09_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Ion-translocating oxidoreductase complex subunit C</fullName>
            <ecNumber evidence="9">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Rnf electron transport complex subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rnfC</name>
        <name evidence="12" type="ORF">BN815_00806</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28288">
        <property type="protein sequence ID" value="CDD28288"/>
        <property type="gene ID" value="BN815_00806"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00461">
        <property type="entry name" value="RsxC_RnfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010208">
        <property type="entry name" value="Ion_transpt_RnfC/RsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026902">
        <property type="entry name" value="RnfC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43034">
        <property type="entry name" value="PTHR43034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13375">
        <property type="entry name" value="RnfC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01945">
        <property type="entry name" value="rnfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 9" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7 9" id="KW-0408">Iron</keyword>
    <keyword evidence="8 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="11">
        <location>
            <begin position="363"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="11">
        <location>
            <begin position="403"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="373"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="379"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="383"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="412"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="418"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="422"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD28288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="446" mass="47665" checksum="98A6DD34534BC52B" modified="2013-07-24" version="1">MEFPKHPFRTHGGAAVPHHKNTWDIPSSTMPPPEKVILPMQQHIGAPCIPTVKKGDHVYVGTVVGDSDAYVSAPVHASVSGTVTEITQVMLTGGQMTQAVVVGSDGKMEKDPAIAPPPPITTKEELAKAARAAGLVGLGGAGFPAHVKLNVPEGKTIDTLLVNVAECEPYVTSDHREALENGRNVLEGVYHVKEILGVQRVIIAVEDNKPDVIQKLSEIAGDPKRDPLDQVRVLPLKSRYPQGAEKVLVQACTGRKVPAGKLPADVGCLVMNIGSLSFLASYMRTGMPLTLKRVTIDGSAIAHPQNVIVPVGTPIKDVVAFCGGYKAEPKKLIMGGPMMGVAITSDELPILKQNNAILAFDQREAQLRQPTACIRCGRCVAACPMHLMPTKLEQAVERQDVEALQSLDIMTCMECGCCSFSCPAGRRLVQAIRLGKNYVRKAGGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXW5</accession>
    <name>R6XXW5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Serine--tRNA ligase</fullName>
            <ecNumber evidence="2">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Seryl-tRNA synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00877</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-serine + tRNA(Sec) = AMP + diphosphate + H(+) + L-seryl-tRNA(Sec)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28568">
        <property type="protein sequence ID" value="CDD28568"/>
        <property type="gene ID" value="BN815_00877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11778">
        <property type="entry name" value="PTHR11778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="143"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="70"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="48697" checksum="707AC4BD0FF2EBB1" modified="2013-07-24" version="1">MLDIKLIRSNPELVKENIKKKFQDEKLPLVDEVLELDAQFRASKGRGDELRQQRNTISKEIGKLMSQGKKDEAQEVKKQVQAIAGELEEMERKEAEMTAEIRKRMLVIPNLIDDSVPIGKDDSENVEVQRFGEPVVPDFEVPYHTEIMERFGGIDLDSARKTSGNGFYYLMGDIARLQSAVISYARDFMIEKGFTYCIPPFMIHGNIVEGVMSQTDMDAMMYKIEGEDLYLIGTSEHSMIGKYIDTILPEETLPQTLTSYSPCFRKEKGAHGIEERGVYRIHQFEKQEMIVICKPEDSMAWYDKMWSYSVELFRSLDIPVRQLECCSGDLADLKVKSCDIEAWSPRQKKYFEVCSCSNMGDAQARRLKIRVKGEDGQNYLPHTLNNTVVAPPRMLIAFLENNLQADGSVRIPEALRPYMGGKDAIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYG1</accession>
    <name>R6XYG1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00962</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28808">
        <property type="protein sequence ID" value="CDD28808"/>
        <property type="gene ID" value="BN815_00962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000813">
        <property type="entry name" value="7Fe_ferredoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00354">
        <property type="entry name" value="7FE8SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="29"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU365098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="56" mass="5511" checksum="73034334906497E0" modified="2013-07-24" version="1">MPYVINDECIACGACAGECPVGAISEGDGKYVIDPDTCIDCGACAGTCPVGAPQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZG1</accession>
    <name>R6XZG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01070</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29138">
        <property type="protein sequence ID" value="CDD29138"/>
        <property type="gene ID" value="BN815_01070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007530">
        <property type="entry name" value="Aminoglycoside_adenylylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04439">
        <property type="entry name" value="Adenyl_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="8366" checksum="A60C38F221800D55" modified="2013-07-24" version="1">MRSEREMYQLILGYAQQDPRVRGVILNGSRANPTAKLDQFRDYDIVYLVTDVAPFKEGDISPRLWGGAGDAAHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZH4</accession>
    <name>R6XZH4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Calcium-translocating P-type ATPase PMCA-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01074</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000126">
        <property type="protein sequence ID" value="CDD29158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29158">
        <property type="protein sequence ID" value="CDD29158"/>
        <property type="gene ID" value="BN815_01074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006068">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00689">
        <property type="entry name" value="Cation_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00690">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00831">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="277"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="669"/>
            <end position="689"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="695"/>
            <end position="715"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="736"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="775"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="813"/>
            <end position="835"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="847"/>
            <end position="868"/>
        </location>
    </feature>
    <feature type="domain" description="Cation_ATPase_N" evidence="9">
        <location>
            <begin position="2"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="877" mass="94318" checksum="D6E30EC9D3F58585" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZN4</accession>
    <name>R6XZN4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhamnulokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00497</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000008">
        <property type="protein sequence ID" value="CDD27055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27055">
        <property type="protein sequence ID" value="CDD27055"/>
        <property type="gene ID" value="BN815_00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_C" evidence="1">
        <location>
            <begin position="16"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14047" checksum="614FE647C2839209" modified="2013-07-24" version="1">MGHSRFLAPENMGEAVREACRETGQPVPQTLGELAACVYHSLAHSYAQSVQELSALTGREYTAVNIVGGGSRDGYLNQLTANATGLPVYAGPTEGTALGNLMVQMLAAGEFPDLAAIRKAVRHSFSIQEVLPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y039</accession>
    <name>R6Y039_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">S4 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00550</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27240">
        <property type="protein sequence ID" value="CDD27240"/>
        <property type="gene ID" value="BN815_00550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025490">
        <property type="entry name" value="RNAbp_HP1423"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038881">
        <property type="entry name" value="RNAbp_HP1423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9292" checksum="A8BAA6F52FCF3213" modified="2013-07-24" version="1">MRLDKYLKISRLIKRRTVANEACDAGRVLVNGKVARASYDVKQGDVLELHLGERVLKAEVLSVLEYAKKEQAPDMYRMLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Z9</accession>
    <name>R6Y0Z9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01250</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000173">
        <property type="protein sequence ID" value="CDD29723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29723">
        <property type="protein sequence ID" value="CDD29723"/>
        <property type="gene ID" value="BN815_01250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424912" evidence="8">
        <location>
            <begin position="23"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="1"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="273"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="308"/>
            <end position="315"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD29723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="523" mass="57406" checksum="BADDB27332386D61" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2F0</accession>
    <name>R6Y2F0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Methionine--tRNA ligase</fullName>
            <ecNumber evidence="13">6.1.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Methionyl-tRNA synthetase</fullName>
            <shortName evidence="13">MetRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">metG</name>
        <name evidence="17" type="ORF">BN815_01476</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>ATP + L-methionine + tRNA(Met) = AMP + diphosphate + L-methionyl-tRNA(Met)</text>
            <dbReference type="Rhea" id="RHEA:13481"/>
            <dbReference type="Rhea" id="RHEA-COMP:9667"/>
            <dbReference type="Rhea" id="RHEA-COMP:9698"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 13">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.10" evidence="13"/>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30233">
        <property type="protein sequence ID" value="CDD30233"/>
        <property type="gene ID" value="BN815_01476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004825">
        <property type="term" value="F:methionine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006431">
        <property type="term" value="P:methionyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07957">
        <property type="entry name" value="Anticodon_Ia_Met"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00814">
        <property type="entry name" value="MetRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02800">
        <property type="entry name" value="tRNA_bind_EcMetRS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01228">
        <property type="entry name" value="Met_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041872">
        <property type="entry name" value="Anticodon_Met"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004495">
        <property type="entry name" value="Met-tRNA-synth_bsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014758">
        <property type="entry name" value="Met-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023457">
        <property type="entry name" value="Met-tRNA_synth_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033911">
        <property type="entry name" value="MetRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43326">
        <property type="entry name" value="PTHR43326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19303">
        <property type="entry name" value="Anticodon_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01041">
        <property type="entry name" value="TRNASYNTHMET"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00398">
        <property type="entry name" value="metG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12 13 15" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 13 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 13 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13 15" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 13 14" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 13 14" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="549"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="13">
        <location>
            <begin position="14"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="13">
        <location>
            <begin position="301"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU363039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="654" mass="74190" checksum="B22252CF4FC92A06" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3B1</accession>
    <name>R6Y3B1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acyl_transf_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01694</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000258">
        <property type="protein sequence ID" value="CDD30478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30478">
        <property type="protein sequence ID" value="CDD30478"/>
        <property type="gene ID" value="BN815_01694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="284"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="312"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="13"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="38416" checksum="F431662705EC6023" modified="2013-07-24" version="1">MQTTLRQGRDVTVDLVKACAILGVAVIHAATGAYQNQLGSAGWYSAVAWGSVSRASVPLFLMCTGVLFLAPEKGLSGKKLWLRYILRIGVAMFFWALVYKFYHLAVSWNFTAESITGAVKEVLFFQHEDHLYYLHMVLLIYAFLPLLRLLTCHGDKRLLQYALGLWFVLGIVYPTVQSYWPFTLLAGVPLQWMLNMSYAAMGYCLLGYYLKKYPIRRRWGALSLGLGLACVFGGTVLSSLRDGALNTKFWEGMSVGVCLMTAGLFSLLASVQGTGPRLGAAARFLSKASFCVYLSHMLFLHVLRALGLDGNWPLPVVGVPLLALLTVLGGLVVYVAASRVPVVKRWLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3N5</accession>
    <name>R6Y3N5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30583">
        <property type="protein sequence ID" value="CDD30583"/>
        <property type="gene ID" value="BN815_01794"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="53" mass="6064" checksum="E600F4313C0D37FC" modified="2013-07-24" version="1">MELLVVWLLIFVVFFCVLYFTVKAAVRDGILAARQAQREEPPQQDAPNEKKDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4I8</accession>
    <name>R6Y4I8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyrroline-5-carboxylate reductase</fullName>
            <shortName evidence="2">P5C reductase</shortName>
            <shortName evidence="2">P5CR</shortName>
            <ecNumber evidence="2">1.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">PCA reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">proC</name>
        <name evidence="5" type="ORF">BN815_00171</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NAD(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:14105"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-proline + NADP(+) = 1-pyrroline-5-carboxylate + 2 H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:14109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15893"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="EC" id="1.5.1.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-proline biosynthesis; L-proline from L-glutamate 5-semialdehyde: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pyrroline-5-carboxylate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.2" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30868">
        <property type="protein sequence ID" value="CDD30868"/>
        <property type="gene ID" value="BN815_00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004735">
        <property type="term" value="F:pyrroline-5-carboxylate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01925">
        <property type="entry name" value="P5C_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028939">
        <property type="entry name" value="P5C_Rdtase_cat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029036">
        <property type="entry name" value="P5CR_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000304">
        <property type="entry name" value="Pyrroline-COOH_reductase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11645">
        <property type="entry name" value="PTHR11645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03807">
        <property type="entry name" value="F420_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14748">
        <property type="entry name" value="P5CR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000193">
        <property type="entry name" value="Pyrrol-5-carb_rd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00112">
        <property type="entry name" value="proC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0521">NADP</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F420_oxidored" evidence="3">
        <location>
            <begin position="5"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="P5CR_dimer" evidence="4">
        <location>
            <begin position="164"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF14748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="265" mass="27593" checksum="33566D6143411C83" modified="2013-07-24" version="1">MAQHTVGFIGFGNMAQAMAKGFLQAGVLEGAQIAACAKRWEKLEKTAGELGVIPCKDAVEVLERSDILILAVKPYLIETVLAPIREKLAGKVLLSVAAGWPFQRFEEVLPAGVHHLSIMPNTPVAIGEGIVLLEEENSLSPQELSQAKELLAALGVVETVPSAQMGIAGTVAGCGPAYAALFLEALGDAGVYHGLPRELSYRLAAQMLAGTGKLHLATGQHPGAMKDAVCSPGGTTIRGVAQLEQHGFRAAVIDAVSASAGEKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y501</accession>
    <name>R6Y501_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Inositol-1-monophosphatase</fullName>
            <ecNumber evidence="5">3.1.3.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00002</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a myo-inositol phosphate + H2O = myo-inositol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24056"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17268"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:84139"/>
            <dbReference type="EC" id="3.1.3.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.25" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000112">
        <property type="protein sequence ID" value="CDD28955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28955">
        <property type="protein sequence ID" value="CDD28955"/>
        <property type="gene ID" value="BN815_00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052832">
        <property type="term" value="F:inositol monophosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052833">
        <property type="term" value="F:inositol monophosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01639">
        <property type="entry name" value="IMPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033942">
        <property type="entry name" value="IMPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="28286" checksum="B29CC6C1D4E9190B" modified="2013-07-24" version="1">MELEQLAQQAIAIVKQAGELIRSIPRPHVYTKEGHANFVTEADMASQRFLIEHLSPLLPEAHFFAEEQEENKMAPGWNWVIDPIDGTTNFIRGYRPSSISVGLVKDGVGMLGIVLDPFAGELFSAVKGGGAFRNGEPIHVADIPLENALVAFGTAPYYQELKDATFAVAKELGVRCGDLRRSGSAAVDLCHLAAGQLDGFFELRLSPWDYAASTVILQEAGAVTGTAPGQAFTFEEKQPFLAGTPGVYPLLEELAGKYLAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y533</accession>
    <name>R6Y533_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Beta_helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31018">
        <property type="protein sequence ID" value="CDD31018"/>
        <property type="gene ID" value="BN815_02172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006626">
        <property type="entry name" value="PbH1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00710">
        <property type="entry name" value="PbH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_helix" evidence="1">
        <location>
            <begin position="297"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="674" mass="76014" checksum="1B96EA79E45C1A66" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y538</accession>
    <name>R6Y538_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01018</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28995">
        <property type="protein sequence ID" value="CDD28995"/>
        <property type="gene ID" value="BN815_01018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="18792" checksum="B55300CE2FBFEE00" modified="2013-07-24" version="1">MKRLYLIGGPMGVGKTTVCQELKRLTAPSVFLDGDWCWDMEPFQVTAETKAMVQENIAFLLGQFLRCSAYETVIFCWVMHQREIIQELLARLPLEGVEVRAVSLLATAETLQARIGKDVAAGLRTWDVLERSLQRLPLYQDLPTEKLWVDDLTPQQAAQRLAGDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y593</accession>
    <name>R6Y593_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase M16 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02261</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="MEROPS" id="M16.A20"/>
    <dbReference type="EnsemblBacteria" id="CDD31108">
        <property type="protein sequence ID" value="CDD31108"/>
        <property type="gene ID" value="BN815_02261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16" evidence="1">
        <location>
            <begin position="64"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="2">
        <location>
            <begin position="182"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="47722" checksum="35A0412C2EED26D9" modified="2013-07-24" version="1">MAKTITGKQVGDSYYRVEHPSGLTVLLYPKEHCSTTYAIFGTRYGSIDNCFQRSDEAGPESVPEGIAHYLEHKLFESEEGDAFERFSKTGASANAFTSFESTCYLFSTTDQVYQSLEILLDFVQSPYFTEETVRKEQGIIGQEIKMYDDDPQWRVMFNYLKAMYRSHPIREDIAGTVESIAKITPELLYRCYNTFYNLGNMVLAIAGNFQVDKALAVCDKMLKPAAPVTVKRVFPQEPDTIVQPVVEERLSVASPLFQFGFKEPGADQPRSEKDVAATEVLLETLASDASPLFRRLLDQGLVNESSFSYEYFEGNGYATVMFSGESKDPQAVAQAILEEVERFQREGIPAEAFERSKRALYGELVAALNSTGSIANGLVNMHLKGRELFTYIDSLASLRLEDGEERLRKVFQRERSVLSVILPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5D3</accession>
    <name>R6Y5D3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Vitamin B12 dependent methionine synthase activation region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02297</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31153">
        <property type="protein sequence ID" value="CDD31153"/>
        <property type="gene ID" value="BN815_02297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008705">
        <property type="term" value="F:methionine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004223">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037010">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02965">
        <property type="entry name" value="Met_synt_B12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56507">
        <property type="entry name" value="SSF56507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0170">Cobalt</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AdoMet activation" evidence="2">
        <location>
            <begin position="132"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22711" checksum="14D180D11B83A634" modified="2013-07-24" version="1">MEKQAIYRYLGGAASEPQLDEMIARAEAEVKRAAAPRYVDGRFPLSVAAEGVIIGGTYLASKTLASHLRGCQEAFLTAFTLGPGIDALIKRYELMEMPLVPVLQACAAAYTEEQADLAQGGIAQYAQERGLYLRPRYSPGYGDLPLASQRFLFDALQISKKIGVTLTENCLMLPMKSITGIVGLSPDPSLCHVGKCMACAAENCPFRQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5F9</accession>
    <name>R6Y5F9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ATP-dependent Clp endopeptidase proteolytic subunit ClpP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02322</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31178">
        <property type="protein sequence ID" value="CDD31178"/>
        <property type="gene ID" value="BN815_02322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="255" mass="27787" checksum="85C6FC3F9D6B8193" modified="2013-07-24" version="1">MKKDTEKNRPLLLGCQEELEETGESRATSQRPLLEDGSVTTRCNGHTIHCLTIIGQIEGHYILPSQNKTTKYEHVIPQIVAVEEDPQIDGLLMLLNTVGGDVEAGLALAELVAGMKKPTVSLVLGGGHSIGVPLAVAAKRSFIAESASMTIHPVRMNGLVLGIPQTLEYFQRMQDRITNFVTQNSNITKERFTSLSRNTQELVMDVGTVLDGPDAVEEGLIDSLGSLSDAIDCLEKMIDRGRKRKNGTPKKKKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Z2</accession>
    <name>R6Y5Z2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10 11">Ribulose-phosphate 3-epimerase</fullName>
            <ecNumber evidence="7 10 11">5.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpe</name>
        <name evidence="15" type="ORF">BN815_00295</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 11">
            <text>D-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13677"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="EC" id="5.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="10 13">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10 11">Belongs to the ribulose-phosphate 3-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.1" evidence="7 10 11"/>
    <dbReference type="EMBL" id="CBGU010000414">
        <property type="protein sequence ID" value="CDD31363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31363">
        <property type="protein sequence ID" value="CDD31363"/>
        <property type="gene ID" value="BN815_00295"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004750">
        <property type="term" value="F:D-ribulose-phosphate 3-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00429">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02227">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026019">
        <property type="entry name" value="Ribul_P_3_epim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000056">
        <property type="entry name" value="Ribul_P_3_epim-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11749">
        <property type="entry name" value="PTHR11749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00834">
        <property type="entry name" value="Ribul_P_3_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001461">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01163">
        <property type="entry name" value="rpe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01085">
        <property type="entry name" value="RIBUL_P_3_EPIMER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="13" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9 10 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="139"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="168"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="14">
        <location>
            <begin position="190"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 12">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13 14">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR001461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD31363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="211" mass="23181" checksum="C3B3A0A95E34FD4F" modified="2013-07-24" version="1">MTYVAPSLLAADFSALGAELKKVREAEILHIDIMDGNFVPNLTMGPQVVKALRGKTDQEFDLHLMLRHPLQYVSMFREAGADWITFHIECDDDPRTVLASIEASGAKPGIAIKPGTPVEELFPFGEQLHHVTVMTVEPGFGGQKLQEWPLKKVRTLKAHFPNLLIEVDGGINLENAHIVREAGTDVLIAGTAVFTAKDPEQAIQQLRGEPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6H1</accession>
    <name>R6Y6H1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01169</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000153">
        <property type="protein sequence ID" value="CDD29490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29490">
        <property type="protein sequence ID" value="CDD29490"/>
        <property type="gene ID" value="BN815_01169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="70"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="18"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="12422" checksum="342052D986EC2D3C" modified="2013-07-24" version="1">MSRAMVKMGREAPTSRANKALRSRSCQGFSASVMGPPNTRNSCHTVMRNRTAQAMYCITSKALVTKGKYPSMAPMSVPRASRNTRDTASISSEAMLETQVTMPSKIQSSIPHLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6I8</accession>
    <name>R6Y6I8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl hydrolases family 32 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 32 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31553">
        <property type="protein sequence ID" value="CDD31553"/>
        <property type="gene ID" value="BN815_00400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001362">
        <property type="entry name" value="Glyco_hydro_32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018053">
        <property type="entry name" value="Glyco_hydro_32_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013148">
        <property type="entry name" value="Glyco_hydro_32_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00251">
        <property type="entry name" value="Glyco_hydro_32N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00640">
        <property type="entry name" value="Glyco_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00609">
        <property type="entry name" value="GLYCOSYL_HYDROL_F32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_32N" evidence="2">
        <location>
            <begin position="8"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="363" mass="41660" checksum="F46863E6EBF9A082" modified="2013-07-24" version="1">MLPKLALHLQPERGWINDPNGLCYFQGKYHAFFQHNPKAPVWDTMHWGHAVSEDLLHWEELPIALYPDQPYESGQGCFSGSAVEKDGRLYLFYTAVDSSLAQTQCLAWTDDGQHFTKYLGNPILPQSPIDPASKDFRDPKVFPWKDGSYRMVCGVGKEGYAAVVLYRSQDLLHWDYVGPLFETREMGPVLECPDLFPLEDKWVLCFSRMDEPRCVQFVLGGFDGERFVPENLQRPALGPNFYAPQSFVDHQGRRILLGWMAPWERPMDQDEVRRGCLTVPLEPFFDDAGQLCLFPVEEAQPYLTQEDAHIRRGAWLFQVTDGEKILLERPASAIWDVRVLSDTHTCEVFLNGGEQVCSFYFQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6U0</accession>
    <name>R6Y6U0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase III delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000165">
        <property type="protein sequence ID" value="CDD29585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29585">
        <property type="protein sequence ID" value="CDD29585"/>
        <property type="gene ID" value="BN815_01197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010372">
        <property type="entry name" value="DNA_pol3_delta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005790">
        <property type="entry name" value="DNA_polIII_delta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06144">
        <property type="entry name" value="DNA_pol3_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01128">
        <property type="entry name" value="holA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_pol3_delta" evidence="1">
        <location>
            <begin position="23"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="351" mass="38865" checksum="1117A21B50422E22" modified="2013-07-24" version="1">MPTVDESGLRKRIGAGELSGLFVVAGEEKYLVKRLAQQLIKRAAGDAFPEFNNQAFTNDSSLDSVGDAAQALPFFAQRKCVSVADFDVEAKSPQELEKLYELWELAPESTTLVFWYPTLDFDGKRSSKWRKFLKQAEERGTVALCARRGQGDLLRFVAREAEKAGCALPRQAAQKLLEYAGQDLTTLQNEVEKLCAYALGQGQGEITLAMIEELVAKSTETTVFLLSGALVAGNYEKAYTLLDALFYQREEPIAILGALATSYVDMVRVRAALENGGTYGDAAQYGDYKGKDFRLKKAQQNVRGVPQQVLRESLHLLLEADMALKGSRLEPRIILDELIAKLLLAARRERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6Y1</accession>
    <name>R6Y6Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29630">
        <property type="protein sequence ID" value="CDD29630"/>
        <property type="gene ID" value="BN815_01216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11776" checksum="460D449EA7D909D9" modified="2013-07-24" version="1">MISGNHPKLAVPAGAAFPTWNQEKIDNLTIPSIEGYEDSLDDPNMTTVAEVFFNASNVQLWYDQYLPASVTEVHKDCMNALFGLESTPQEIGEQHDAAMQEYLASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8C6</accession>
    <name>R6Y8C6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D-alanine--D-alanine ligase</fullName>
            <ecNumber evidence="7">6.3.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">D-Ala-D-Ala ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">D-alanylalanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ddl</name>
        <name evidence="11" type="ORF">BN815_01423</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + 2 D-alanine = ADP + D-alanyl-D-alanine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:11224"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 magnesium or manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the D-alanine--D-alanine ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.4" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000202">
        <property type="protein sequence ID" value="CDD30180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30180">
        <property type="protein sequence ID" value="CDD30180"/>
        <property type="gene ID" value="BN815_01423"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008716">
        <property type="term" value="F:D-alanine-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00047">
        <property type="entry name" value="Dala_Dala_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000291">
        <property type="entry name" value="D-Ala_lig_Van_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005905">
        <property type="entry name" value="D_ala_D_ala"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011095">
        <property type="entry name" value="Dala_Dala_lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011127">
        <property type="entry name" value="Dala_Dala_lig_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07478">
        <property type="entry name" value="Dala_Dala_lig_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01820">
        <property type="entry name" value="Dala_Dala_lig_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039102">
        <property type="entry name" value="Ddl/VanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01205">
        <property type="entry name" value="D_ala_D_alaTIGR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00843">
        <property type="entry name" value="DALA_DALA_LIGASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00844">
        <property type="entry name" value="DALA_DALA_LIGASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 7 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="10">
        <location>
            <begin position="145"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR039102-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="359" mass="39282" checksum="DD32B1D7EC25EA5E" modified="2013-07-24" version="1">MNKSAKLSLAVIFGGVSSEHEVSRMSVTSILENLSNERYEVHMVGITKEGRWLLYTGPVEDILSGAWEQGPVTPAFLSPDPSVHGLVALRDGKAETIHVDVIFPALHGKNGEDGTIQGLFQLSGIPYVGCDTESSAICMDKAVTHSLLSSADIEQAHYLWFYADRFDAAPDTIKNKIQARLDFPVFVKPSNAGSSVGVSKVERFEDLDQAIRKAAREDKKVVVEEGITGQEVEVAVLGNRDCDASIVGEIGASAQFYDYDDKYINGTSQLYIPARIPQEVSEKIRQTAVRAYRLLGCSGLARVDFFVTAGDNRVILNEINTLPGFTSISMYPKLWMAMGLSYGELLDKLIELALQRAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8G3</accession>
    <name>R6Y8G3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01458</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30215">
        <property type="protein sequence ID" value="CDD30215"/>
        <property type="gene ID" value="BN815_01458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="169" mass="18963" checksum="1FC3BDDB0A9BCE90" modified="2013-07-24" version="1">MKIETPRLTLRDFTPADGPALHAILGDGEVMAFAEPPYTPAQTQAFLEQFCIARRGGLACVEKATGQLVGYLLFSPLGEQVWELGWFFRRDTWGKGFATEASRALLCHAFQTLSAREVVAETIDTGRAARVLEKLWFRREGAQPVESPAGGRTLLYRYALRAKDWEREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8M5</accession>
    <name>R6Y8M5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30280">
        <property type="protein sequence ID" value="CDD30280"/>
        <property type="gene ID" value="BN815_01514"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="9364" checksum="1A6B0E8CEEC94AE1" modified="2013-07-24" version="1">MNCYYIIGLRVDHRHSNALNLQKTLTEFGCNIKLRVGLHETGEDFCSDDGVIMLQACGDKETIGKMMDAFNNVEGVTAKLLDLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8T2</accession>
    <name>R6Y8T2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3502 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30335">
        <property type="protein sequence ID" value="CDD30335"/>
        <property type="gene ID" value="BN815_01569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022627">
        <property type="entry name" value="DUF3502"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12010">
        <property type="entry name" value="DUF3502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3502" evidence="1">
        <location>
            <begin position="2"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="6887" checksum="5359FD987A5D4A51" modified="2013-07-24" version="1">MANQITACNNVVSQYDAALRWGTLNPDETLDQFNAELEAAGINEIIEEKQRQLDEYLASKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y993</accession>
    <name>R6Y993_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Valine--tRNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01696</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000258">
        <property type="protein sequence ID" value="CDD30480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30480">
        <property type="protein sequence ID" value="CDD30480"/>
        <property type="gene ID" value="BN815_01696"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004832">
        <property type="term" value="F:valine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006438">
        <property type="term" value="P:valyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019499">
        <property type="entry name" value="Val-tRNA_synth_tRNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10458">
        <property type="entry name" value="Val_tRNA-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Val_tRNA-synt_C" evidence="4">
        <location>
            <begin position="9"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="4"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="7810" checksum="C276D9A731EC3838" modified="2013-07-24" version="1">MDDLVDKKAETARLTKELEGAKKQLATAEAKLQNEKFISKAPQNVIDGVKDNAAKLREKVRMIEESLAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9W6</accession>
    <name>R6Y9W6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cyclic-di-AMP phosphodiesterase</fullName>
            <ecNumber evidence="1">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01905</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3',3'-c-di-AMP + H2O = 5'-O-phosphonoadenylyl-(3'-&gt;5')-adenosine + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54420"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:71500"/>
            <dbReference type="ChEBI" id="CHEBI:138171"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="2">For phosphodiesterase activity, probably binds 2 Mn(2+) per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GdpP/PdeA phosphodiesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30700">
        <property type="protein sequence ID" value="CDD30700"/>
        <property type="gene ID" value="BN815_01905"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106409">
        <property type="term" value="F:cyclic-di-AMP phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014528">
        <property type="entry name" value="GdpP/PdeA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026583">
        <property type="entry name" value="YybT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0464">Manganese</keyword>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="5"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="DHH" evidence="4">
        <location>
            <begin position="336"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="5">
        <location>
            <begin position="513"/>
            <end position="636"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="416"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="440"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR026583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR026583-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="651" mass="71558" checksum="2799DC44FC4E9A7E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA74</accession>
    <name>R6YA74_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Exonuclease domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02012</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:24409"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="2">
            <dbReference type="Rhea" id="RHEA:27643"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27647"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:11853"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000325">
        <property type="protein sequence ID" value="CDD30825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30825">
        <property type="protein sequence ID" value="CDD30825"/>
        <property type="gene ID" value="BN815_02012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16833">
        <property type="entry name" value="YfiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003730">
        <property type="entry name" value="Cu_polyphenol_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038371">
        <property type="entry name" value="Cu_polyphenol_OxRdtase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30616">
        <property type="entry name" value="PTHR30616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02578">
        <property type="entry name" value="Cu-oxidase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00726">
        <property type="entry name" value="TIGR00726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Exonuclease" evidence="9">
        <location>
            <begin position="3"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="530" mass="59282" checksum="2D004C5F9DB53804" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAH8</accession>
    <name>R6YAH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cysteine desulfhydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000344">
        <property type="protein sequence ID" value="CDD30925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30925">
        <property type="protein sequence ID" value="CDD30925"/>
        <property type="gene ID" value="BN815_02087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="285" mass="29553" checksum="0A8583EC1E7DF408" modified="2013-07-24" version="1">MGRARLKAVGRRLKARVLHGDPLHHLPAKLQGRHPLQQLGAGQQGAYARGAVHLVGGDAVEVAAQPLHVHRAVASGLGAVHQHGDAPLMGQADDLLHRVHHAEGVGHVGQGHQLGGRGEGLAEPRPVRLSAGQDGHHLEVQPLALAQLLPGHKVGVVLAAQSENPVPRLAEGLQVAVSHQVDGPRGPAGEHHGVVFPRPEEAAHLVPGLLKAAGHLPAQAVGAAVDVGVAGDSGLRQGIQHRLGPLGGGGVVQISPLPIRQQGEILTVHHRFTLSYKASASWRTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAL9</accession>
    <name>R6YAL9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02119</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30960">
        <property type="protein sequence ID" value="CDD30960"/>
        <property type="gene ID" value="BN815_02119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="16335" checksum="58B7183360D3B76B" modified="2013-07-24" version="1">MYTMMQACRETDMTYQALKFYCNQGLVPNVKRDQNNRRVFDEHDIKWIKDLMCLKRCGMSIQEMKEYLALCLEGPSTIPQRKVLLEKKQQALRESIRELEDSVAYIDWKQNFYDEVLAGKRPYVSNLIPTAQWEEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAW0</accession>
    <name>R6YAW0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02174</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31020">
        <property type="protein sequence ID" value="CDD31020"/>
        <property type="gene ID" value="BN815_02174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="6853" checksum="8D2945668BDB1CC2" modified="2013-07-24" version="1">MLLRQVLADGRAQRRRGCVLTCKAGLVSYYEKFGFQNRGVSPSALARQTWYDMAALFAPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB33</accession>
    <name>R6YB33_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cell cycle protein FtsW/RodA/SpoVE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02253</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31100">
        <property type="protein sequence ID" value="CDD31100"/>
        <property type="gene ID" value="BN815_02253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001182">
        <property type="entry name" value="FtsW/RodA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011923">
        <property type="entry name" value="RodA/MrdB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474">
        <property type="entry name" value="PTHR30474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30474:SF1">
        <property type="entry name" value="PTHR30474:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01098">
        <property type="entry name" value="FTSW_RODA_SPOVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="75"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="316"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="349"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="398" mass="43729" checksum="2206088E0E36DDDA" modified="2013-07-24" version="1">MVLRCIKGIWKYIKRVDILLWLIVAAISAYSLVLLRSVDSAVGSSYFRTQVFAIALGVAGAIVISLLDYGELANFWYLLAGFSVFLMIYTAIFGEAVQGSGGVNARAWINIAGRTFQSSELVKIFFCLTFGKHLDTLRKKGLIDNPLHVVLLGCHALVPMLLCELQGDTGAAVVFFAMFVVMSLAAHVKLRYFAVLGGLVLIAIPILWQFVMDEYQKARIVALFNLDNVEVQANEGYQQYQGMISIGSGKFSGQGLFQGSRVASNSVPFQQSDYIFSVAGEELGFIGCSLILLLLFLLLVKILHVAHSSRDDLGKYICFGYFGIIALQSISNIGMCLALLPVMGVTLPFFSAGGSSAACMYFGIGLVQSVYMRRKESDGLRLKRKTPLRFTYSRVKNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBS8</accession>
    <name>R6YBS8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00311</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31380">
        <property type="protein sequence ID" value="CDD31380"/>
        <property type="gene ID" value="BN815_00311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425742" evidence="2">
        <location>
            <begin position="31"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="28"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="175" mass="17442" checksum="9FEB8DBCBA6AFB53" modified="2013-07-24" version="1">MKRRVCLTLCGAALALALAACGGANPTAGAESQPSLVSSQAESSQQESSVQAATPQPRQAEPSQGESASSAAEGALVLTQQDSGAEAGYEPTITLYPDGTFALFASFYDGSVTISGTYAQEGDGYVLTPTDSTAQGTAGSDVGEITLTPSGGGFAYSGGQLGATYDGAVFLPPQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC17</accession>
    <name>R6YC17_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28834">
        <property type="protein sequence ID" value="CDD28834"/>
        <property type="gene ID" value="BN815_00976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="10003" checksum="D29F48E7888439D1" modified="2013-07-24" version="1">MAGKRRPWRALWAVGGVLPLWLGERTFALPVPSWMVGVAGWSLVALGFLTVALAALWSSRPRERRPSFWPYRPQGLFRVAMKSRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCX9</accession>
    <name>R6YCX9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00464</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31760">
        <property type="protein sequence ID" value="CDD31760"/>
        <property type="gene ID" value="BN815_00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="16706" checksum="8EA38BB05B030AAE" modified="2013-07-24" version="1">MKNYCGLDCAQCPAVDSCPGCASTGGKPFGGTCVLGECCKAQGCETPGSCFSGTCAVKEQLIREFNDLHIPHMGPVTDLNALPGSYINLEYTLPGGQKVKFWEDGRVYLGNQLEKQDGSCRCYGLTADENWLLVCEYGDNGSDPELVVYKRREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEE7</accession>
    <name>R6YEE7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Toxin-antitoxin system toxin component PIN family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29679">
        <property type="protein sequence ID" value="CDD29679"/>
        <property type="gene ID" value="BN815_01220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="7459" checksum="66815B1D068FF01A" modified="2013-07-24" version="1">MSYELIPAVDHAEKLIRDAKDQPILNAAIVSDVDVILTGDKDFLSLDMEHPKCMTVAQFLESEGIEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEK9</accession>
    <name>R6YEK9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01253</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29759">
        <property type="protein sequence ID" value="CDD29759"/>
        <property type="gene ID" value="BN815_01253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="17797" checksum="2027CD7B8B373A7D" modified="2013-07-24" version="1">MSSLENSLYSARKSKGLTQEEVAEKLGVSRQTISKWELDETLPDIRQAKSLAQLYHTTLDDLLQYDAQVEEIQRVIRHTSEETQQKVDWTKLWGEMYPVLTTYPQQVDIPRYTAPLAALLQDLESTYHYTPLDAFLVLKDILGKMWTEQHPAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEZ6</accession>
    <name>R6YEZ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrogenase Fe-only</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01310</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29924">
        <property type="protein sequence ID" value="CDD29924"/>
        <property type="gene ID" value="BN815_01310"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008901">
        <property type="term" value="F:ferredoxin hydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.260.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008953">
        <property type="entry name" value="Fe_hydrogenase_HydB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003149">
        <property type="entry name" value="Fe_hydrogenase_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036991">
        <property type="entry name" value="Fe_hydrogenase_ssu_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02256">
        <property type="entry name" value="Fe_hyd_SSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00902">
        <property type="entry name" value="Fe_hyd_SSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48674">
        <property type="entry name" value="SSF48674"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe_hyd_SSU" evidence="1">
        <location>
            <begin position="2"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="41" mass="4795" checksum="9843FDF434EE40F6" modified="2013-07-24" version="1">MPLRKSHLNPVLQKCYEEFLGEPGSHKAHEILHTSYVKRGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFZ0</accession>
    <name>R6YFZ0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">CNA-B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01502</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Secreted</location>
            <location evidence="1">Cell wall</location>
            <topology evidence="1">Peptidoglycan-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30259">
        <property type="protein sequence ID" value="CDD30259"/>
        <property type="gene ID" value="BN815_01502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00222">
        <property type="entry name" value="CollagenBindB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008454">
        <property type="entry name" value="Collagen-bd_Cna-like_B-typ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011252">
        <property type="entry name" value="Fibrogen-bd_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05738">
        <property type="entry name" value="Cna_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0134">Cell wall</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0572">Peptidoglycan-anchor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="25"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1527"/>
            <end position="1546"/>
        </location>
    </feature>
    <feature type="domain" description="CNA-B" evidence="8">
        <location>
            <begin position="1409"/>
            <end position="1497"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="554"/>
            <end position="578"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1557" mass="169473" checksum="465A462C70A80E52" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG75</accession>
    <name>R6YG75_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01586</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000230">
        <property type="protein sequence ID" value="CDD30359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30359">
        <property type="protein sequence ID" value="CDD30359"/>
        <property type="gene ID" value="BN815_01586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437704" evidence="1">
        <location>
            <begin position="19"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15090" checksum="38C9FA3DA6E40C74" modified="2013-07-24" version="1">MAAAISSMRSWPAIKVMASPLIKASTAWSSVQVRASWGTAPSTSWANCSTALAACSKVNRVVFPSTLEKYEAAVSAMRPTLVVLHSTESNKSTRCSWPPNTSPAAPLSESFSAASIKSSQMRQYTSPSVLSWLYASNQSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGS1</accession>
    <name>R6YGS1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein</fullName>
            <shortName evidence="2">P2TMN nickel insertion protein</shortName>
            <ecNumber evidence="2">4.99.1.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Nickel-pincer cofactor biosynthesis protein LarC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">larC</name>
        <name evidence="4" type="ORF">BN815_00713</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>Ni(II)-pyridinium-3,5-bisthiocarboxylate mononucleotide = Ni(2+) + pyridinium-3,5-bisthiocarboxylate mononucleotide</text>
            <dbReference type="Rhea" id="RHEA:54784"/>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <dbReference type="ChEBI" id="CHEBI:137372"/>
            <dbReference type="ChEBI" id="CHEBI:137373"/>
            <dbReference type="EC" id="4.99.1.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LarC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.99.1.12" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000061">
        <property type="protein sequence ID" value="CDD27756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27756">
        <property type="protein sequence ID" value="CDD27756"/>
        <property type="gene ID" value="BN815_00713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051604">
        <property type="term" value="P:protein maturation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01074">
        <property type="entry name" value="LarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002822">
        <property type="entry name" value="Ni_insertion"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36566">
        <property type="entry name" value="PTHR36566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01969">
        <property type="entry name" value="DUF111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00299">
        <property type="entry name" value="TIGR00299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1 2" id="KW-0533">Nickel</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="86"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="86"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="437" mass="47619" checksum="F803310C1DB7F670" modified="2013-07-24" version="1">MKTLYLECNMGAAGDMLTAALLELHPDPQGFVERMNRLGLPGVVFAAQPAVKCGITGTQVSVTVGGEEEESHDVPLHSHVHETAQDEAHPGHAHDHVHGHDHEHTHDHEHTHDHEHSHGHEHGHGHHHHAGMGDIRHILSHLDIPQPVRQDAEAVYQLIAQAESHAHGRPVEEIHFHEVGTLDAVTDVVAVCWLLHDLAPEQIVASPVHVGCGQVRCAHGILPVPAPATAYILQGVPTCGGSVQGELCTPTGAALLKHFVQRFGPSPVMRVEKTGYGMGKKDFEAANCVRAMLGQTQEESAAIAQLACNLDDMTPEALGFAQERLWEAGALDVTTAPIGMKKNRPGVQLTCLCRLEDREKLVSVLFAHTTTLGVRESLCARYTLARSQRTVETEHGPVRVKEARGWGVTREKPEYEDVANIAREQGLTLDQVKELLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGZ1</accession>
    <name>R6YGZ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01835</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000286">
        <property type="protein sequence ID" value="CDD30624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30624">
        <property type="protein sequence ID" value="CDD30624"/>
        <property type="gene ID" value="BN815_01835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="15090" checksum="B097A2D1B8765879" modified="2013-07-24" version="1">MDDLTQQLQKVLSDPQTMGQLQGLLSSLGGQEEKPAPAPSGGPDLSALLGALGGGQASPPPAESPSTALAGLNPQALSLMARLGPLLNQANREDDATRLLRALRPLLGEARQKKVDEAIQILQMLRLLPLLKESGVFSGLLSGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH03</accession>
    <name>R6YH03_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ASCH domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30639">
        <property type="protein sequence ID" value="CDD30639"/>
        <property type="gene ID" value="BN815_01846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007374">
        <property type="entry name" value="ASCH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04266">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ASCH" evidence="1">
        <location>
            <begin position="4"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14937" checksum="3C4FAFE7EC6CE12C" modified="2013-07-24" version="1">MKALSLMEPWAALIAAGVKSIETRSWRTAYRGPLYIHASRAKVDQKDPHIQRLLSLLPEGSLHPGFVVCRCVLKDCLPMDESFLGWIEGHPLEKLCGEYAPGRFAWVLEQVEPLEAPVAAKGHLSLWEWEPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH48</accession>
    <name>R6YH48_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ACT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01899</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30694">
        <property type="protein sequence ID" value="CDD30694"/>
        <property type="gene ID" value="BN815_01899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045739">
        <property type="entry name" value="ACT_dom_pair"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19571">
        <property type="entry name" value="ACT_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="5"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="15669" checksum="F05FC50A0C645123" modified="2013-07-24" version="1">MQIQQLSVFIENKPGRMAEVTEVLAEANIDIRAISVADTRDFGILRVIVDKPKEAVEALKAHGMTVTLTKVIAVGIDDKPGAFSKAVRLLSNEGFDVEYMYAFISRDKGKAYVIIRLDNGQKAAEALHANGFEILSPEAIYGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHT2</accession>
    <name>R6YHT2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02118</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EamA transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30959">
        <property type="protein sequence ID" value="CDD30959"/>
        <property type="gene ID" value="BN815_02118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="106"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="240"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="3">
        <location>
            <begin position="2"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="3">
        <location>
            <begin position="151"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="30375" checksum="AB1107FFF092A203" modified="2013-07-24" version="1">MWLFFALGSAFFAGITAVLAKIGIENVNSTLATALRTVVVLAFSWLMVFVVGSQGGIAQISGPTLLFLVLSGLSTGASWLCYFKALQLGDVNKVAPIDKSSTVLTILLAFIFLGEPVSIPQALGVVGIGVGTLLMIAKKEVEDGKPHSKAWLVYAFLSAVFASLTSIFGKIGVENVESNLGTAIRTIVVLVMAWVMVFVTGEQKGIRSIGKKSWMFLFLSGITTGLSWLCYYRALQDGPASVVVPIDKLSILVTIVFSWIVLKEKLTPKAAVGLVLILAGTGAMLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI54</accession>
    <name>R6YI54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-acetylmuramoyl-L-alanine amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02227</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31074">
        <property type="protein sequence ID" value="CDD31074"/>
        <property type="gene ID" value="BN815_02227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02696">
        <property type="entry name" value="MurNAc-LAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002508">
        <property type="entry name" value="MurNAc-LAA_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01520">
        <property type="entry name" value="Amidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00646">
        <property type="entry name" value="Ami_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MurNAc-LAA" evidence="1">
        <location>
            <begin position="73"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="20961" checksum="1EE18ECADEB4A083" modified="2013-07-24" version="1">MPIRIFIDQGHNPQGVNAGAEGFGLREQDVNYAVGMELARLLNSDPRFVARVSRTTPTESLGASNATSLQRRVQMANSWPADYFVSIHCNANTNPAVNGTEVYVYQQRTQAYWLAQHVLNGVVEAVGTKDNGVRLNPSLYVLRRTAMPAILVELAYLTNGNDALKLRDEQPAFARGIYNGILSYFGFAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI95</accession>
    <name>R6YI95_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ion-translocating oxidoreductase complex subunit G</fullName>
            <ecNumber evidence="6">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Rnf electron transport complex subunit G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnfG</name>
        <name evidence="8" type="ORF">BN815_00804</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnfG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28281">
        <property type="protein sequence ID" value="CDD28281"/>
        <property type="gene ID" value="BN815_00804"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00479">
        <property type="entry name" value="RsxG_RnfG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007329">
        <property type="entry name" value="FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010209">
        <property type="entry name" value="Ion_transpt_RnfG/RsxG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36118">
        <property type="entry name" value="PTHR36118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04205">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006091">
        <property type="entry name" value="E_trnsport_RnfG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00900">
        <property type="entry name" value="FMN_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01947">
        <property type="entry name" value="rnfG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 6" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FMN_bind" evidence="7">
        <location>
            <begin position="87"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="modified residue" description="FMN phosphoryl threonine" evidence="6">
        <location>
            <position position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="19080" checksum="82FFB6A60451C772" modified="2013-07-24" version="1">MKLSWKEILRPTAVLFVICVAVAAALAGTNLLTEERIAQQAVATAEESRKVVLPGAEEFQAQEDGAYYTGSAGGQLVGYVFETEASGYGGKVKVMTGIDAEGAITGVVILSHDETPGLGANAEKPDFLNQFLQQAPEGGLEVIKYQTPGEGQIQAMTGATVTSTAVTNAVNQAVAQYNTVKGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIK6</accession>
    <name>R6YIK6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">GHMP kinase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02383</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31239">
        <property type="protein sequence ID" value="CDD31239"/>
        <property type="gene ID" value="BN815_02383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004335">
        <property type="term" value="F:galactokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000705">
        <property type="entry name" value="Galactokinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019539">
        <property type="entry name" value="GalKase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006206">
        <property type="entry name" value="Mevalonate/galactokinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10457:SF6">
        <property type="entry name" value="PTHR10457:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10509">
        <property type="entry name" value="GalKase_gal_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000530">
        <property type="entry name" value="Galactokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GalKase_gal_bdg" evidence="6">
        <location>
            <begin position="26"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_N" evidence="5">
        <location>
            <begin position="140"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF10509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="412" mass="45018" checksum="9CACE16E320CABBE" modified="2013-07-24" version="1">MICKFEELYQQEAQGQRARYQALREGFKAQFGSDEGGEYFSAPGRSEIGGNHTDHQHGRVLAAAVNLDIAAYARKTDNGRAVLKSAEYTKMDDIDISDLDMKEEEKDTSAALLRGICARCVQLGYKVGGFEAYTITRVLKGSGLSSSAAFEVLVVTIISHLYNDDAIDPVTVAKIAQYAENVYFGKPSGLLDQTASSVGGFTAIDFKDPENILIEKVNFDVTAHGYALCVVDTGGNHADLTNEYALVPKEMKEVAAFFGKEFLRDVDEQEFYGKIGEVRKQTGDRAVLRAMHFFDDDRLAAQEAQALRAGDFDSFKEMVIASGRSSFQRLQNVFATINPQEQGLSLALALTEKLLAGEGAWRVHGGGFAGTIQAYVPLARLDEYRAAMEKVFGKGACYVLSVRQAGGTKVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ34</accession>
    <name>R6YJ34_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00344</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000421">
        <property type="protein sequence ID" value="CDD31434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31434">
        <property type="protein sequence ID" value="CDD31434"/>
        <property type="gene ID" value="BN815_00344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="112" mass="12078" checksum="8822E14A427C0AB5" modified="2013-07-24" version="1">MESAGLGRSRCIRYDGGWETVYWLDGEGALVLPQQVLASYRLPAGGTVQVGRVCTQSVELWPGQAGEATVSPGGLLRVPLAVWGRTAIQPGRSWLGLLPFRQALFLVDRGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ50</accession>
    <name>R6YJ50_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA (cytosine-5-)-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00349</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31449">
        <property type="protein sequence ID" value="CDD31449"/>
        <property type="gene ID" value="BN815_00349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="368" mass="40962" checksum="B8DB1D1C2493D546" modified="2013-07-24" version="1">MILQSTMYQKQNIDLSSAPWTMHEFFAGSGLVAYGLRGMFTPVWANDISEQKAAVYEANFGCERFILDDIKNVKGADLPFAHLSWASFPCQDLSLAGSIGGIHASRSGLVWEWLRVLDEMDDKPKILLLENVAGLLSTNGGDNYRVLHMALVERGYRCGAVLLNASHFVPQSRPRVFIIAVQENCPVPDELVGNGPCWLHNNVATQLGRELPGWIWWHTEKPSRRTTSLKDIVEDDATFDKDDALRLVPERHWAKLRAHDTVYATGYRRTRNGKQQLELRFDGIAGCLRTPEGGSSKQYLVVKKDGQVHARLLTVREAARLMGAPDSFELPGSSNDGYKAMGDAVAAPVAQFIGERFLTKIAEAVYDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ82</accession>
    <name>R6YJ82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28591">
        <property type="protein sequence ID" value="CDD28591"/>
        <property type="gene ID" value="BN815_00889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="128" mass="13769" checksum="2A0B03D9A919DE48" modified="2013-07-24" version="1">MLQQKGTTSKMVLVVLFAVYALLSAGGLVLFKLGGQDAALQLGKTGFSLTLSWKMLLGIFCYLCSFLLWLVIVSRTQLTFAMPLSVGVVNTLVFLGSARFLGEEITPTKIAGLVVIVLGLFLISIPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJA3</accession>
    <name>R6YJA3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ThrE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00898</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28626">
        <property type="protein sequence ID" value="CDD28626"/>
        <property type="gene ID" value="BN815_00898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010619">
        <property type="entry name" value="ThrE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06738">
        <property type="entry name" value="ThrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="ThrE" evidence="2">
        <location>
            <begin position="13"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28028" checksum="506925D4549C9CF0" modified="2013-07-24" version="1">MGGENNSILELSFQMGETLLRNGAEISRVQETMERVAQSYHAESFNVYVLTNGIFAVGKEQGKERSVELRHIISTNTHLGRICAVNQLSREIAEGKHTVEEAFQELRRIQEIPYAPLPLAILACGVGSACFSYLFGGDWLDAFTAFLCGLLLEPYLYWVGKHNLSKFLTNLSASALVALVGGVLFLLGLGHNMDKVIIGSIIRLVPGMALTTSIRDFFHGDYLSGAIRMLDAVLVGGCIAVGVGVVVRLLSLLTGGALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJE9</accession>
    <name>R6YJE9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00918</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28686">
        <property type="protein sequence ID" value="CDD28686"/>
        <property type="gene ID" value="BN815_00918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="41255" checksum="C050815AD1B4B135" modified="2013-07-24" version="1">MASVTLKNIYKIYSGGVTAVTDFNLDIADKEFIILVGPSGCGKSTTLRMIAGLEEISKGELYIGDVLSNDIAPKDRDIAMVFQNYALYPHMTVFDNMAFGLKLRKTPKDEIKRRVEEAARILDISHLLDRKPKALSGGQRQRVALGRAIVRDPKVFLLDEPLSNLDAKLRAQMRTEIAKLHKRLGTTFIYVTHDQTEAMTMGDRIVVMKDGFIQQVDTPQNLYDYPINEFVAGFMGSPQMNFIDAKLGKNGNDYTLTFGACTITVPKKKADGAVANLADYVGKDVVFGIRPEDVHDEPEFIEKVGGAHVTCEVEVTELMGAETYLYLNCEGNAVTARVEPTSTAKAGDKSKIAFDLNKMHLFDKETEKTILN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK57</accession>
    <name>R6YK57_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01002</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28926">
        <property type="protein sequence ID" value="CDD28926"/>
        <property type="gene ID" value="BN815_01002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="33899" checksum="335D808A57B5A33A" modified="2013-07-24" version="1">MKQLDIGGSGVLGSAIGVGCMRMNCMEPQAILEYIHTALEKGINFFDHADIYGGGECETRFGQALALEPGLREKLVLQTKCGIRPDRYDFSKEHILESVEGSLRRLGTDHVDFLLLHRPDALMEPEEVAEAFHRLESQGKVLHFGVSNFSARQLELLQSGLKQKLRANQMQFGIMCAGMVSHSLEANTHFPNAADRDGEVLDYCRLKGITIQAWSPFQYGFFEGVFIDNEKFPALNEKLQQLSEKYGVSKSALAVAWILRHPAGIQAIVGTTKAQRLADIATAADIQLSREDWYQIYLAAGNKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKY4</accession>
    <name>R6YKY4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cytidylate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000136">
        <property type="protein sequence ID" value="CDD29246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29246">
        <property type="protein sequence ID" value="CDD29246"/>
        <property type="gene ID" value="BN815_01105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="22888" checksum="2CA5D525F9F1CE89" modified="2013-07-24" version="1">MLPVITISRQYGSGGHEVGEKVAQKLNLPFYDKALIAMAAKKSGLSEEVFADADEKATSSLLYSMVMGSYAFGARVPGINEMPINDKLFVLQSDIIKKAAKEGPCVIIGRCADYILREHENCLNVFVHADKAARIKRIVGLGHCEEKKAPDFVTKKDKQRANYYNFYSNNRWDDLLNYDLTIDTSRFSVDMAVDLIIDAAKKLDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLE7</accession>
    <name>R6YLE7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01142</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000145">
        <property type="protein sequence ID" value="CDD29396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29396">
        <property type="protein sequence ID" value="CDD29396"/>
        <property type="gene ID" value="BN815_01142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_Synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Asparagine synthetase" evidence="1">
        <location>
            <begin position="69"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="246" mass="28230" checksum="B987CB10369BAE14" modified="2013-07-24" version="1">MTPEDILASLEEVIQLLGTYDITTIRASLGMYLVCKAIHQQTDIRVLLTGEISDELFGYKYTDFAPSPLAFQEESQKRLRELHMYDVLRADRCISVNSLEARVPFGDLDFVSYVMALDPDLKVNRYGKGKYLLRHAFEQGGYLPAEILWREKAAFSDAVGHSMVDYLKAYAETQYTGEAFERGRKSYTHAQPFTKESLLYRDIFEKYYPGQSQMVVDFWMPNKEWEGCDVDDPSARVLSNYGDSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLI7</accession>
    <name>R6YLI7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01152</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29436">
        <property type="protein sequence ID" value="CDD29436"/>
        <property type="gene ID" value="BN815_01152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="73"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="307" mass="34667" checksum="96F7B96C149D9177" modified="2013-07-24" version="1">MKRVGKTLKRFWPLYLMFLPGAVYLFINCYIPMFGIQIAFRTYNARDGIYGSPWCGMENFEFLFRTDDAWIMTRNTLLYNFVFIVLGTVLAIAVAIILNEVKSKGAKQLYQTIILIPYLISMVIVSYLAFAFLSTSNGFINHGILEPLFGENAAIDWYNEPKYWPVILVIINIWKGLGYNMILYYATICGIDHSLYEAAVVDGANRWQQIWNITLPSLKSTIIILTLMALGGIFRSDFGLFYQVPQNSGPLINVTQTIDTYVYRGLMTTSNIGMSSAAGVYQSIVGFILVVSANLVVRKLDSDSALF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLL9</accession>
    <name>R6YLL9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000150">
        <property type="protein sequence ID" value="CDD29466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29466">
        <property type="protein sequence ID" value="CDD29466"/>
        <property type="gene ID" value="BN815_01165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000825">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037284">
        <property type="entry name" value="SUF_FeS_clus_asmbl_SufBD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01458">
        <property type="entry name" value="SUFBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101960">
        <property type="entry name" value="SSF101960"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="32738" checksum="41E3A988AE03E134" modified="2013-07-24" version="1">MKSITEELLKLVSDWKGGFTGAFNIREDGGCAGRQSTEHIKIEPKQDLPGLDIHILPGTKGESVSIPACVTHGDVDDLVYNDFYVGAWADVTIVAGCGVHTENGEPARHNGIHRFFLEEGARVKYIEKHVGTGQGEGIRSIDPVTECHLQAGAVLEMDTSQIGGVDRTTRKTKATLGEKAKLVIRERLLTEGRQQAYTDFEVVMDGEGASTDLVSRSVARGDSYQAYRSKITGNAACAGHSECDAIIAENGRVDAAPELSANHGDAALIHEAAIGKIAGEQILKLRTLGLTEEEAEEKIVEGFLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMB8</accession>
    <name>R6YMB8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">2,3-bisphosphoglycerate-independent phosphoglycerate mutase</fullName>
            <shortName evidence="8">BPG-independent PGAM</shortName>
            <shortName evidence="8">Phosphoglyceromutase</shortName>
            <shortName evidence="8">iPGM</shortName>
            <ecNumber evidence="8">5.4.2.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gpmI</name>
        <name evidence="15" type="ORF">BN815_01254</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate</text>
            <dbReference type="Rhea" id="RHEA:15901"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="EC" id="5.4.2.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the BPG-independent phosphoglycerate mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.12" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29761">
        <property type="protein sequence ID" value="CDD29761"/>
        <property type="gene ID" value="BN815_01254"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046537">
        <property type="term" value="F:2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006007">
        <property type="term" value="P:glucose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16010">
        <property type="entry name" value="iPGM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1450.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01038">
        <property type="entry name" value="GpmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011258">
        <property type="entry name" value="BPG-indep_PGM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006124">
        <property type="entry name" value="Metalloenzyme"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036646">
        <property type="entry name" value="PGAM_B_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005995">
        <property type="entry name" value="Pgm_bpd_ind"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31637">
        <property type="entry name" value="PTHR31637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06415">
        <property type="entry name" value="iPGM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01676">
        <property type="entry name" value="Metalloenzyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001492">
        <property type="entry name" value="IPGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64158">
        <property type="entry name" value="SSF64158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01307">
        <property type="entry name" value="pgm_bpd_ind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425653" description="2,3-bisphosphoglycerate-independent phosphoglycerate mutase" evidence="12">
        <location>
            <begin position="25"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="domain" description="Metalloenzyme" evidence="13">
        <location>
            <begin position="3"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="domain" description="iPGM_N" evidence="14">
        <location>
            <begin position="80"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="151"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="254"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphoserine intermediate" evidence="8 9">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="329"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="396"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="400"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="437"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="438"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <position position="455"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001492-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD29761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="503" mass="55087" checksum="633F28E1A2F1599A" modified="2013-07-24" version="1">MKKPLVLMILDGFGIAPTEGNAIAAAKHPNMDKIFAENPHTQIGASGMDVGLPDGQMGNSEVGHTNIGAGRIVYQELTRITKSAQDGDMDKNEALLKAMNNAKDNGKALHLMGLLSDGGVHSHNTHLYALLEMAKRVGVEKVFVHCFMDGRDVPPSSGKDYVKELMDKLEEIGVGKIATVMGRYYAMDRDNRWERVEKAYAAMVYGEGEQAACPLCAMQNSYDKEVTDEFVVPTVVKGAEPISEGDSVIFYNFRPDRAREITRTLVDPDFTGFERKKGFFPLCYVCMTQYDATMPNVEVAYKPESLVNTFGEYISNKGLTQLRIAETEKYAHVTFFFNGGVEKQYPGEDRILVKSPAVATYDLQPEMSAYEVTDKMVEAVKSGKYDALILNYANCDMVGHTGVFEAAVKAVEAVDTCVGRVVEAVKEMGGCVLLTADHGNADKMVDEDGTPFTAHTTNPVPFCVINHPCQLREGGRLADIAPTMLKVLGLEQPAEMTGESIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMP6</accession>
    <name>R6YMP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phosphotransferase enzyme family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29881">
        <property type="protein sequence ID" value="CDD29881"/>
        <property type="gene ID" value="BN815_01282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="8"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="33170" checksum="F33882BD8433D41F" modified="2013-07-24" version="1">MEFTRLEEVRAGWSGDRKYHAWDDGGQEFFLRLSPPEKWEKAQSAFALQEKAFQLGLPVSEPIELAQEEGQVRFVERWLSGQMAEDALPALSQEEQYRLGWEAGEILRALHTIPAPAEAEDWESRFNRKIERKIQLYRECSFQYENGEAFIRYMEENRGLLRGRPQCMQHGDYHTGNMMLCGGKLFVIDFDRPDAGDPWEEFNRIVWSAQLSPAFARGTVDGYFDGAPPLAFWKLLALYIANNTLGSLPWAVPFGEEQMDIMREQAAQVLDWYDGMENPVPRWYRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP31</accession>
    <name>R6YP31_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase U32 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000234">
        <property type="protein sequence ID" value="CDD30366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30366">
        <property type="protein sequence ID" value="CDD30366"/>
        <property type="gene ID" value="BN815_01593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001539">
        <property type="entry name" value="Peptidase_U32"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032525">
        <property type="entry name" value="Peptidase_U32_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01136">
        <property type="entry name" value="Peptidase_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16325">
        <property type="entry name" value="Peptidase_U32_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01276">
        <property type="entry name" value="PEPTIDASE_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_U32_C" evidence="1">
        <location>
            <begin position="176"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="29792" checksum="19B981CDAA04AA94" modified="2013-07-24" version="1">MPLSEIQGIRETTDPGLELEAFVHGAMCMSFSGRCVISNYMTGRDANRGECAQPCRWEYHLVEAQRPGEVFTLTQEEKGAYFFNSNDLRMIDAIPQMMDAGITSLKIEGRAKSAYYVACVTAAYRRAIDFAWEHPGEPLPAAILAETEKISHRPYSHGFYFGGEPGQTLDRSHYARGYELVAVCQGREDGLVTLRERNRFFRGQEVDILQPGREPFTATLDELYNEDGEAIQVAPHAEMVVRWKTDLPVEAGAYLRVKKEPRSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPI3</accession>
    <name>R6YPI3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase ribosomal protein N-acetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000260">
        <property type="protein sequence ID" value="CDD30486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30486">
        <property type="protein sequence ID" value="CDD30486"/>
        <property type="gene ID" value="BN815_01702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="22236" checksum="5BF662BB6BCAD1AC" modified="2013-07-24" version="1">MKGSLLFSSYPFITSEKATLTRVTDMDLEALWQILSDEDSHRFTPEAALRSHRECAAKLRQFDTMFQERRGVVLGIYSTLNRLVGLLEISQINPQVESVTLSFILGQEYTGQGYASAAVRATTEYLFRTVGVRRIQCFVLPINYRAVLVLERCGFVKEGTIREGFYWPDKGIVDLTVYSLLPTDKKPKSTGPAYYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPN6</accession>
    <name>R6YPN6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsF</name>
        <name evidence="6" type="ORF">BN815_01729</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds together with S18 to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bS6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30516">
        <property type="protein sequence ID" value="CDD30516"/>
        <property type="gene ID" value="BN815_01729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00473">
        <property type="entry name" value="bS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00360">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000529">
        <property type="entry name" value="Ribosomal_S6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020814">
        <property type="entry name" value="Ribosomal_S6_plastid/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035980">
        <property type="entry name" value="Ribosomal_S6_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21011">
        <property type="entry name" value="PTHR21011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01250">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54995">
        <property type="entry name" value="SSF54995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00166">
        <property type="entry name" value="S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="136" mass="14902" checksum="E3FF2B9DE6DF5CBF" modified="2013-07-24" version="1">MAEGKNLYEVVIVTSAKLGEEGSAELVNKFKALIAEHGTVESVDDWGKRRFAYPIAKQTEGYYTLINFESGPEFTAELDRRLGITDGILRNLIVKRDPRHVAALNAQKAKKAEENNIDVEAIAVEAVEAPAAESAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPS3</accession>
    <name>R6YPS3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative translation elongation factor G</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01779</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30566">
        <property type="protein sequence ID" value="CDD30566"/>
        <property type="gene ID" value="BN815_01779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16262">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01434">
        <property type="entry name" value="EFG_mtEFG1_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03713">
        <property type="entry name" value="EFG_mtEFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009022">
        <property type="entry name" value="EFG_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035649">
        <property type="entry name" value="EFG_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="4">
        <location>
            <begin position="7"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="689" mass="74016" checksum="868EB3E341738D9D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPX7</accession>
    <name>R6YPX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00147</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000290">
        <property type="protein sequence ID" value="CDD30636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30636">
        <property type="protein sequence ID" value="CDD30636"/>
        <property type="gene ID" value="BN815_00147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="24626" checksum="88E767E737F8C3EE" modified="2013-07-24" version="1">MPNNDFPRILTLLRKERGFSQKKAAADLGISQALLSHYEKGVRECGLDFLVRAAAYYGVSCDYLLGRTPHRGTAPAGSPPAQGAAPLAQSGGSAAQAQCQRLENSLSIVFGILEKIKCEAVTRQVSAYLSAAVYQAFRLLYSAREKNPQEAFSLDLRLYAAQAEALMDLSLGKARFLLEGGSLEDSRGMAQSQLPPLTPDMLLRESPLRAPSLLELVQEVEGTIAGKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPX9</accession>
    <name>R6YPX9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30641">
        <property type="protein sequence ID" value="CDD30641"/>
        <property type="gene ID" value="BN815_01848"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="8853" checksum="6595B0B10474B160" modified="2013-07-24" version="1">MKSAKTRLGFTGLVVCGAAVLVWGAADLYAWATTGQEVLAAYGEAESVLRLVENTFTSALGKLLVGAAAGGVGLWGLRGSRPKDQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ22</accession>
    <name>R6YQ22_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein CotJB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01901</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30696">
        <property type="protein sequence ID" value="CDD30696"/>
        <property type="gene ID" value="BN815_01901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024207">
        <property type="entry name" value="CotJB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12652">
        <property type="entry name" value="CotJB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CotJB" evidence="1">
        <location>
            <begin position="4"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="9493" checksum="33A26D475F5968F9" modified="2013-07-24" version="1">MMRKRYYAARFACWELHLFLDTHPNNKEAARRLEEYQARAQRLGKEYEEKFGPLGETTQDTSRWAWISDPWPWEKEGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQA1</accession>
    <name>R6YQA1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01980</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30776">
        <property type="protein sequence ID" value="CDD30776"/>
        <property type="gene ID" value="BN815_01980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14616" checksum="91579D6E55D5313E" modified="2013-07-24" version="1">MFSPRFPVGGCVKVSGEFLYKLPIIQADSKGSHFKGVITVTVAKHNIDEARVYFARVGTDLLTPTDEAVREIQNKPLGVMTNKLLHTDMPCSPPWKMCSSKGRPYSIITGLIAGTNLSYRLCQMNRGGMWGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR36</accession>
    <name>R6YR36_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit b</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F(0) sector subunit b</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">ATPase subunit I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-type ATPase subunit b</fullName>
            <shortName evidence="11">F-ATPase subunit b</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpF</name>
        <name evidence="14" type="ORF">BN815_02155</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).</text>
    </comment>
    <comment type="function">
        <text evidence="10 11">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11 12">Belongs to the ATPase B chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30996">
        <property type="protein sequence ID" value="CDD30996"/>
        <property type="gene ID" value="BN815_02155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01398">
        <property type="entry name" value="ATP_synth_b_bprime"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028987">
        <property type="entry name" value="ATP_synth_B-like_membr_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002146">
        <property type="entry name" value="ATP_synth_b/b'su_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005864">
        <property type="entry name" value="ATP_synth_F0_bsu_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00430">
        <property type="entry name" value="ATP-synt_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81573">
        <property type="entry name" value="SSF81573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01144">
        <property type="entry name" value="ATP_synt_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="5 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="13">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="161" mass="18484" checksum="7CEF3845D22D33B6" modified="2013-07-24" version="1">MLELDWDIVWTIVNLLILFLLLKHFLFKPITQMMESRTAEIENNLKDAEEQKQKAQQLNTQYEEQLQGAQAQAAQIISDAKAQGQKEYSSILKTAQADAAKEKERSRAEMERERDEMLRGVQENVTELVLLTASKLSQKELDEESDRKLVDSFLSEAGDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRH8</accession>
    <name>R6YRH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02335</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31191">
        <property type="protein sequence ID" value="CDD31191"/>
        <property type="gene ID" value="BN815_02335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13710" checksum="05D25ECA5C4EA8B5" modified="2013-07-24" version="1">MGRALQNWDASQLSLKAWRELLAESLQNASRFAIHCWNDEEPWIQLALEYGQRRPVPWEGGTVIEGAVTPAFREMLLSLERPSDRDVYNKFLPFFSLVLDDSFYFEHYGIELTFLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRS6</accession>
    <name>R6YRS6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00229</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31291">
        <property type="protein sequence ID" value="CDD31291"/>
        <property type="gene ID" value="BN815_00229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="159" mass="17456" checksum="F14C7A6C899A7370" modified="2013-07-24" version="1">MQATRKVLNRIMNVLAGVSLIAMTALTCWQVFTRYVLNNPSTWSEELVGYLFAWASLFGASLITGERGHMNIPVVVEKMPAAAQKFFAIFAELIAMAFSLIILVYGGYRITLLAMGQMTSSLGVAVGVFYVAMPVCGVINILYTILNIYDICKGKKKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRW9</accession>
    <name>R6YRW9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000402">
        <property type="protein sequence ID" value="CDD31326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31326">
        <property type="protein sequence ID" value="CDD31326"/>
        <property type="gene ID" value="BN815_00261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="10952" checksum="5D9FAE97D6701231" modified="2013-07-24" version="1">MTDLKRIYQSDLPNRAIAVYLYLRGRANKEGICWPAIPTMARELKMSESTVRRGVRDLEKAGFLSVEERFRWNKADSSNLYVLVGQSSEKQLLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9Q1</accession>
    <name>R6Z9Q1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_00021</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. RecQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000024">
        <property type="protein sequence ID" value="CDD27212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27212">
        <property type="protein sequence ID" value="CDD27212"/>
        <property type="gene ID" value="BN815_00021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043138">
        <property type="term" value="F:3'-5' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004589">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006293">
        <property type="entry name" value="DNA_helicase_ATP-dep_RecQ_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010997">
        <property type="entry name" value="HRDC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002121">
        <property type="entry name" value="HRDC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044876">
        <property type="entry name" value="HRDC_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032284">
        <property type="entry name" value="RecQ_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018982">
        <property type="entry name" value="RQC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00570">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16124">
        <property type="entry name" value="RecQ_Zn_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09382">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00341">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00956">
        <property type="entry name" value="RQC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47819">
        <property type="entry name" value="SSF47819"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01389">
        <property type="entry name" value="recQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00614">
        <property type="entry name" value="recQ_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50967">
        <property type="entry name" value="HRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="25"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="9">
        <location>
            <begin position="211"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="12">
        <location>
            <begin position="215"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="domain" description="HRDC" evidence="10">
        <location>
            <begin position="529"/>
            <end position="606"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD27212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="606" mass="68181" checksum="BC56BC28F9DEF369" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAE8</accession>
    <name>R6ZAE8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00627</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000040">
        <property type="protein sequence ID" value="CDD27437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27437">
        <property type="protein sequence ID" value="CDD27437"/>
        <property type="gene ID" value="BN815_00627"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="38"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="27187" checksum="32E7E875612A613F" modified="2013-07-24" version="1">MFPGISILAETLALCYNEGYPPNQRGAHPFEKERKETVTIQRLEREEAHRLYFARFREDFVPSELRPWGSILRLMDQGAYSIFASKEAGEILAYATFIQCSGALLLDYFAVDPARRGQGVGTAFFHGLQKLPALGQAPCLYIEAESLESAPTPQERETRRRRIQFYTRCGCVESPWYAYLFGVEYRILLLPLEGSLPGEEQMREQLLSVYNVTVPMHTDGTQEGFRRVCRVYRREGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCU9</accession>
    <name>R6ZCU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00820</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28327">
        <property type="protein sequence ID" value="CDD28327"/>
        <property type="gene ID" value="BN815_00820"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="56" mass="6308" checksum="7A02E22C36B81130" modified="2013-07-24" version="1">MPDPSKMDMEAKLYFNSLPPILQEQLMQSTAELNTKEDLMRYCANALGRDASSAQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZE86</accession>
    <name>R6ZE86_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Stage II sporulation protein P</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00974</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28832">
        <property type="protein sequence ID" value="CDD28832"/>
        <property type="gene ID" value="BN815_00974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010897">
        <property type="entry name" value="Spore_II_P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07454">
        <property type="entry name" value="SpoIIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02867">
        <property type="entry name" value="spore_II_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="358" mass="38235" checksum="4E29715536D1C3D8" modified="2013-07-24" version="1">MKQGFVRWVKNVAVLGSAALCLWCAAGEFQSWARREGDDALLFAAGMKAQAASSQEASPAPTATPAPDYFLPDDGVVSLAAAQEPQASVTPDPSRSYAPVEEIQLSGGAQVGNFYVKDSTGSGTDLSAALQEEPSVHLKQDGSVEILIYHTHTSEAYSQSYTGFYYTDMETRTTNQEQSVVAAGEALKQALEAAGFGVIHDTTVNDTLYNGSYDRSWEVLQKNLAEYPTIQVTIDVHRDSMTTDSGVKYKPTATIGGRKAAQVMLIAGCDADGGWGDFPRWEENLRLALRVQESLETLYPGLARPLNFSNSKYNMNATPGSLLVEVGTEVNTVSEAVYAGQLVGQALVPVLEATVGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG05</accession>
    <name>R6ZG05_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UPF0597 protein CLOSTHATH_05058</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000146">
        <property type="protein sequence ID" value="CDD29397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29397">
        <property type="protein sequence ID" value="CDD29397"/>
        <property type="gene ID" value="BN815_00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005130">
        <property type="entry name" value="Ser_deHydtase-like_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021144">
        <property type="entry name" value="UPF0597"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30501">
        <property type="entry name" value="PTHR30501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03313">
        <property type="entry name" value="SDH_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SDH_alpha" evidence="1">
        <location>
            <begin position="3"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="158" mass="16728" checksum="743B6A7B09EF2D7D" modified="2013-07-24" version="1">MVEYAKELGADWETTLRAVLVSDLITIHLKAEIGRLSAYCGAVSAGCGSGAGIAWLYGREKEPQALLKDVSHTIVNALAVDSGIVCDGAKASCAAKIASAVDAGLLGFYMYQNGQQFRGGDGIISKGVEETIRNIGLLATQGMRETDREILDIMTTRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG63</accession>
    <name>R6ZG63_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative DNA modification/repair radical SAM protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01158</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29447">
        <property type="protein sequence ID" value="CDD29447"/>
        <property type="gene ID" value="BN815_01158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023874">
        <property type="entry name" value="DNA_rSAM_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21180:SF9">
        <property type="entry name" value="PTHR21180:SF9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01102">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03916">
        <property type="entry name" value="rSAM_link_UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="49133" checksum="5A52CC662B0B8F85" modified="2013-07-24" version="1">MDMFEKLKILTDAAKYDVACTSSGSDRRGRQGVLGNAVAAGICHSFAADGRCISLLKVLLSNDCAFDCAYCVNRRSAECRRATFTPEELCSLTMEFYRRNYIEGLFLSSAVVGSPDATCERMLAVLKTLRERCRFGGYVHVKAIPGASPELTYQLGLYADRMSVNIELPSQQSLKLLAPQKSKEKILSPMGLIRDSIQENSHALSTYRHAPQFVPAGQSTQMIVGATPESDRQILRLTEGLYHKYGLKRVFFSAYMPVVSDRNLPALGTPPPLLREHRLYQADWLLRFYGFSAGEILDEDAPNFDPLLDPKCGWAVRHMEHFPVEVNKAPYEMLLRVPGIGVKSAQRIRAARRYAKLGFADLKKLGVVLKRARFFLTCQGKSLSPLPTDDPAVIAGAIREGSAFHRTQLPGKEGGGLLLDQPEQLSLFSPTKEDHVQCLTGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGE3</accession>
    <name>R6ZGE3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Shikimate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01181</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29512">
        <property type="protein sequence ID" value="CDD29512"/>
        <property type="gene ID" value="BN815_01181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="21025" checksum="B0256A3C6B993953" modified="2013-07-24" version="1">MKHIVHIYGPCGSGTSTLGREIGRRLGFRFLDTDDFFWLPTDPQYTQKRPLEERLALLEEELDKPGDVVLSGALIPWGNPLIPRFTLVVRLEAETQLRLERLKARERADFGSRIEPGGDMYQDFLEFLEYARGYDTGGLNMRSRARHDAWEKLLPCPVLHLDGAAPLEETVEEVRRALERMES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIJ2</accession>
    <name>R6ZIJ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptide/opine/nickel uptake ABC transporter family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00120</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30272">
        <property type="protein sequence ID" value="CDD30272"/>
        <property type="gene ID" value="BN815_00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="1"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="27479" checksum="F98B8AF74F9D14B5" modified="2013-07-24" version="1">MGLLPYNSRREGSILYKGQELTPRRLEKLRGREISLVPQGVTYLDPLMKVGPQLTQGRRDIDTRRRAREALSRYGLGPGTERLYPFQLSGGMARRVLMASAVMESPQLIIADEPTPGLDAQAAGQLLGHFRELAQEGAAVLFITHDLELALTVAHRVAVFYAGETIEEALASDFEAGSLRHPFTQALWDALPQRGFRPIPGSQPYPSEVGEGCPFLGQCPHPGAGCAQGPLPLRPFQGGAVRCLYPNKEVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIL6</accession>
    <name>R6ZIL6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30297">
        <property type="protein sequence ID" value="CDD30297"/>
        <property type="gene ID" value="BN815_01531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32376" checksum="DE234AB2A525DBC4" modified="2013-07-24" version="1">MELQGFENKARPIGVLGVKISQGGEVIAHKTWDEECRRNVYSASKSVTSCAVGFAVQEGLLSLEERLVDAFAQDLPETVSENLERATVRDLLTMCLGQARGELMGAQRPLYQERDWVKLALSFPFTDAPNTKFVYNNVGPYLAGMLVQRRSGCDLVSYLTPRLFEHLGITRPTWETDPLGHTFGAGGLFLTLSELHTFGQFYLQNGRWKGRQLLDPAWVKASTSKQVENGAYGYGYLFWGGEQNTFRADGKYGQLSILCREKDAVITVVAECREGAALNRAIFDELYPQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIZ8</accession>
    <name>R6ZIZ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-hydroxyglutaryl-CoA dehydratase D-component-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01653</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FldB/FldC dehydratase alpha/beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000242">
        <property type="protein sequence ID" value="CDD30432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30432">
        <property type="protein sequence ID" value="CDD30432"/>
        <property type="gene ID" value="BN815_01653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018709">
        <property type="entry name" value="CoA_activase_DUF2229"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010327">
        <property type="entry name" value="FldB/FldC_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09989">
        <property type="entry name" value="DUF2229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06050">
        <property type="entry name" value="HGD-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2229" evidence="3">
        <location>
            <begin position="1"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="263" mass="29543" checksum="E439B0D6407BD567" modified="2013-07-24" version="1">MHGHIEALLDQKPDAIFYPCMSYNLDEHLGDNHYNCPVVAYYPEVLDANIAALQNVKFIYDYVGLHRRKDFPGKMTNILARYFDPIPEKEVKAASDAAYAEYYAHMERIHKKGQEYLALAKEKDLPVIILSGRPYHLDSEINHGIDKLICECGAVVISEDAVSELETKFPTHVLNQWTYHARLYAAAKFVADSGDKRINLVQMVSFGCGVDAITGDEVRSILEAGDRIYTQIKIDEITNLGAVRIRLRSLFAALGLGSEATPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJG1</accession>
    <name>R6ZJG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01798</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30587">
        <property type="protein sequence ID" value="CDD30587"/>
        <property type="gene ID" value="BN815_01798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="10061" checksum="E375695A293EACD6" modified="2013-07-24" version="1">MVVLSAIFDVLSSIVSAFFQVLGALGRGLWDILGAVASAVLWPVRAVGGILFGGWDVSSQWTPLYFVACGVLLAALVFLLACALWVNHRRKKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJH5</accession>
    <name>R6ZJH5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SBP_bac_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01813</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30602">
        <property type="protein sequence ID" value="CDD30602"/>
        <property type="gene ID" value="BN815_01813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426770" description="SBP_bac_5 domain-containing protein" evidence="2">
        <location>
            <begin position="39"/>
            <end position="573"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="103"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="573" mass="63647" checksum="4855066AB0E8B9A7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJI6</accession>
    <name>R6ZJI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01823</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30612">
        <property type="protein sequence ID" value="CDD30612"/>
        <property type="gene ID" value="BN815_01823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="26634" checksum="FCAB5DD1BB1722C2" modified="2013-07-24" version="1">MRSLEDISKTNPEKPLLLTVDGKEYYRCPIHTHLIRVGENLSELMRQYVLPYFEEGDCVYISEKIVSLCQKDIIPKESVKISRLAKFLSRFASTNDSAGIGVHNVYKMQVAIMLCGKPKVLYAALAAGVGRIFGKRGVFYEITGPQVAGLDGFYSTYFEDYKNFGILSPKEPDKAAAKVEEETGIHCCIADINDFGGEVLAVSPKSTMDKPLLQKLLKDNPAGNGHEMTPFVLMREKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJJ1</accession>
    <name>R6ZJJ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein with conserved CXXC pairs</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01828</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30617">
        <property type="protein sequence ID" value="CDD30617"/>
        <property type="gene ID" value="BN815_01828"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.530.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036593">
        <property type="entry name" value="CPE0013-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012460">
        <property type="entry name" value="DUF1667"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39450">
        <property type="entry name" value="PTHR39450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07892">
        <property type="entry name" value="DUF1667"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160148">
        <property type="entry name" value="SSF160148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="120" mass="12542" checksum="460807AA93F2E72D" modified="2013-07-24" version="1">MAIRELTCISCPLGCPLKVETDENGAVLQVTGNTCKRGEVYGKKEVTAPERTVTSTVAVVGGSAPLVSVRTKTDIPKGKIFDCMEAIRAAKIQAPVHIGDVVVENVCGTGVDVIATKTVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJR4</accession>
    <name>R6ZJR4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phenylacetate-coenzyme A ligase</fullName>
            <ecNumber evidence="1">6.2.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phenylacetyl-CoA ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01897</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-phenylacetate + ATP + CoA = AMP + diphosphate + phenylacetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:20956"/>
            <dbReference type="ChEBI" id="CHEBI:18401"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57390"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aromatic compound metabolism; phenylacetate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the phenylacetyl-CoA ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.30" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30692">
        <property type="protein sequence ID" value="CDD30692"/>
        <property type="gene ID" value="BN815_01897"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00930"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047475">
        <property type="term" value="F:phenylacetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05913">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028154">
        <property type="entry name" value="AMP-dep_Lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011880">
        <property type="entry name" value="PA_CoA_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14535">
        <property type="entry name" value="AMP-binding_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006444">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="79"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C_2" evidence="3">
        <location>
            <begin position="336"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="433" mass="48602" checksum="6C8C294E228C3F53" modified="2013-07-24" version="1">MPNYFEPEIECASRETLRQIQSQRLVKMVKHCYEHVPFYKKKFDEIGLRPEDIRSIDDLQKLPFTTKQDLRDTYPFGLIAVPRDDLARVHASSGTTGKQTVVAYTQNDLDIWARSAARSIVGCGGTHEDFVHVSYGYGLFTGGLGLHDGAEKLGATVIPVSSGNTNRQVQILQDYGSDILCCTPSYAMYIGETVRDKGIDPESLRVRIGIFGAEPWTEEMRREIEKALAIKAYDIYGLSEIAGPGVACECTEQKGMHVQEDFFFPEIIDPATGEQLPDGEEGELVFTCIGKEALPLIRYRTRDICSLTHEKCACGRTTVRMNKPKGRTDDMLIIRGINVFPSQIESVLLDLGMDPNYRMIVDRKNNLDTLEVQVEMNESLFSDTVRNLEKVERTIADALHSTLNIAAKITLLEPKSIQRSEGKAKRVIDKRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJT9</accession>
    <name>R6ZJT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01922</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30717">
        <property type="protein sequence ID" value="CDD30717"/>
        <property type="gene ID" value="BN815_01922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15177" checksum="8250FB050F01E558" modified="2013-07-24" version="1">MALYCAAFSPTGTSLRGAWAMASALGEAQLLDVTTSPAPEQVFTPQDLVVFGAPVYGGRVFQGALERLSPLRGQDTPCIVTVTYGNRDFDDALLELTRFCQERGFLPFAGAALVGEHTYGSLAPGRPNRLHRPGPAQCGGPPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJW3</accession>
    <name>R6ZJW3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01946</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30742">
        <property type="protein sequence ID" value="CDD30742"/>
        <property type="gene ID" value="BN815_01946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="15766" checksum="1594D740635F1C6C" modified="2013-07-24" version="1">MGNVVLENKVRQYFAAWLENRPEALEQLFAPEIVYSECYGPEYQGLEQVKRWFADWNRKGKVLEWRIKSVLQEGQNLAVEWYFCCEYQGKRDAFDGVSLLAFNEGGKIVSLKEFQSVAEHVFPYGKNGRNQENES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKH3</accession>
    <name>R6ZKH3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02116</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30957">
        <property type="protein sequence ID" value="CDD30957"/>
        <property type="gene ID" value="BN815_02116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="20310" checksum="D71AC8CB6B7E6A6D" modified="2013-07-24" version="1">MFQEACQLPGKYRAISPSNHKELCQLAGKASHLLLVFPLYVDGIPATLLEFLKALEREPPREKPTISLLINCGFLEPEQNDTAVEILRLFCEQAGYPFGSVLKVASGEAILSTPFRFLVQRKVKRFARAVALGERLTLQVTMPLPKGVFLRASRSFWTQYGAKNGITPEQMASLEIEDGKFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKR3</accession>
    <name>R6ZKR3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Imidazole glycerol phosphate synthase subunit HisF</fullName>
            <ecNumber evidence="9">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">IGP synthase cyclase subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">IGP synthase subunit HisF</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ImGP synthase subunit HisF</fullName>
            <shortName evidence="9">IGPS subunit HisF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisF</name>
        <name evidence="11" type="ORF">BN815_02176</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 9">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9 10">Belongs to the HisA/HisF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31022">
        <property type="protein sequence ID" value="CDD31022"/>
        <property type="gene ID" value="BN815_02176"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04731">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01013">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004651">
        <property type="entry name" value="HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00735">
        <property type="entry name" value="hisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 10" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="9">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="27105" checksum="DA2504EF17E46869" modified="2013-07-24" version="1">MYAKRIIPCLDLKNGRVVKGTNFVGLRDAGDPVECAIEYDSQGADELVLLDITASSDARDIMVDIVTRVAESIFIPFTVGGGIRTVEDFTRILRAGADKVSVNSAALKNPAIIQEAAYKFGSQCVVVAMDAKRRPEGGWTLYLNGGRVDTGKDAVAWAREVERLGAGEILLTSMDCDGTKAGYDLELTRAISEAVSIPVIASGGAGKLEHFYDAFTQGKADAVLAASLFHFREIAIPHLKQYLAGRGVPVRLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKX1</accession>
    <name>R6ZKX1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">TM2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02245</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31092">
        <property type="protein sequence ID" value="CDD31092"/>
        <property type="gene ID" value="BN815_02245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007829">
        <property type="entry name" value="TM2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05154">
        <property type="entry name" value="TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="TM2" evidence="6">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF05154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="9906" checksum="06374E3E8F4E0088" modified="2013-07-24" version="1">MVPQYNVPPAGYNQKSRLAAGLLGILLGTLGVHNFYLGFTTRGVVQLLVSIIGGIFTCGMATVAIAVWGFVEGVLLLAASPSRMYDGHGVILRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLG5</accession>
    <name>R6ZLG5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DctM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00230</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31292">
        <property type="protein sequence ID" value="CDD31292"/>
        <property type="gene ID" value="BN815_00230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="7"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="173"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="248"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="285"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="309"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="338"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="363"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="403"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="11"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="433" mass="45206" checksum="CBDFE2F600391BBB" modified="2013-07-24" version="1">MAIQSLLMIIGILAILLVIGVPISYSIGIASLVTILQTVPLDISVVTGAQRIFVGMSKFSLTAIPFFILAGNLMNQGGIAKRLVNFVMAILGKLPGALLVTNVGANALFGAISGSASAAAAAVGSMVQEGEEEQGYDKDLCAATNGSSAPSGLLIPPSNALITYSLAAGGTSVAALFMAGYVPGIIWALCCMVVAVILAKKKGYKGTPGKFSWATLGKATLQALPSLSLIIVVIGGIVAGVFSATEGSAIAVVYSLILGICYRNITWKSFWNIVVESAKMSGMVVFLIGVSNILGWVMAFLQIPQAVSTVLLGITDNPIIILLIMNLILLIAGTFMDVTPAILIFTPLFLPIVQTFGMDPIHFGLVLVYNLCIGNITPPVGNTLFVAIKVGRSTLAKTMPYMLWYYVAILVGLLLVTYIPAVSMFLPQLAGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMT0</accession>
    <name>R6ZMT0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Signal recognition particle receptor FtsY</fullName>
            <shortName evidence="5">SRP receptor</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsY</name>
        <name evidence="8" type="ORF">BN815_00466</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP-binding SRP family. FtsY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31762">
        <property type="protein sequence ID" value="CDD31762"/>
        <property type="gene ID" value="BN815_00466"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031226">
        <property type="term" value="C:intrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00920">
        <property type="entry name" value="FtsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF7">
        <property type="entry name" value="PTHR43134:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="SSF47364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SRP54" evidence="7">
        <location>
            <begin position="274"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="314"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="314"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="360"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="107"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="189"/>
            <end position="193"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="253"/>
            <end position="256"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="382" mass="42106" checksum="1C0C86D073728211" modified="2013-07-24" version="1">MGIFDKIREGLKKTRDNISGQITQMVNSFTKIDEELFEELEELLVMGDVGVNTAGFICDRLRQRIKEKGITDPSLIMGELKAIVSDMLQGDNELHISTKPSIILVIGVNGVGKTTTIGKLASRLKGEGKSVILGAADTFRAAAIEQLEVWADRAGVPLIKHKEGADPAAVVFDTIAAAKARDCDVIICDTAGRLHNKKNLMDELGKISRVIDRELPGCDRETLLVLDAATGQNAVNQAREFQSAAGITGIVLTKLDGTPKGGVVLPIMQDLGLPVKFIGVGEQVDDLQPFDPDAFADALFDVHREEAPVIKEDRTAWEEERREEERLLEEQARAEAEAAAEEEQPEPWEAEPAPVEEAPQEEPQPEKKKRRFWPFGRKRDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXG1</accession>
    <name>R6XXG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000089">
        <property type="protein sequence ID" value="CDD28428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28428">
        <property type="protein sequence ID" value="CDD28428"/>
        <property type="gene ID" value="BN815_00846"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="6784" checksum="A8515D27CAB680ED" modified="2013-07-24" version="1">MTEVERRLYRLLLFFDAAAIVISMVAGPLHHTSMAIGAAISAGIISLCLVAYGLYFWPWKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY79</accession>
    <name>R6XY79_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ethanolamine utilization protein EutH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28713">
        <property type="protein sequence ID" value="CDD28713"/>
        <property type="gene ID" value="BN815_00929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034228">
        <property type="term" value="F:ethanolamine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007441">
        <property type="entry name" value="EutH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40089">
        <property type="entry name" value="PTHR40089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04346">
        <property type="entry name" value="EutH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019466">
        <property type="entry name" value="EutH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="328"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="361" mass="37870" checksum="270BCA4813B31405" modified="2013-07-24" version="1">MNEVLMIVMAAGAVLGGFDRLRGNKWGFGDKFETGFMLLGSMALSMVGMICIAPVLAQWLGNVIVPLYRLIGVDPAMFGSLLSIDMGGYQLALELAEDPQLGNYAGLVVASIFGCTLVFTIPVGMGMIPKADRPFFAKGIMLGLVAMPVGLVAGGLLSGLSVVQCLHQNLPIFALAVLLLLGLWKIPNKMIKGFILLSEGIRWLVTISLALAAVESMTGFNPIPGMTPIADAMATVSSIAVVLLGSLPIAELVRRLLMRPFAWLGERLHMKPQSLTGMLISLVSSLPTLSMYEEMDNRGKVAVGAFVVSGTSLLAAHMAFTVSAEPTMLAPVLVAKLTGALAAAVLALCLKSGPAETGKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y051</accession>
    <name>R6Y051_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01139</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000145">
        <property type="protein sequence ID" value="CDD29393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29393">
        <property type="protein sequence ID" value="CDD29393"/>
        <property type="gene ID" value="BN815_01139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="439" mass="44092" checksum="B019FA1777BEE1E6" modified="2013-07-24" version="1">MNHVQDVAGLLVAVPAVLGDPGAVDVHPILVAGNAAGVGGLPIAEQVAGDVGGIGALAHQGAAVEAAGSHLHLGDGAVGEDLDFLGHGLAAEAGAVGLAVVEDVPLLPNLHHAAVVVAAVVHGLIRGLVGADAQIVVGDDDAAVLEALGGGLAGGVAQLVEHHGGIDEVVGVPRLADGGRLEELVALKAAALAVGLAGGDEHGLLPDGEHIRAQHRAHGAVAALVAGKAEAGVQVGVLPLGEDTGVKLGLVPFPLAQQSAVGVVDVAVELELPRGGIAYRHGDHALFVQHIVEVVPAVGALGDVRGVEAHAAVGVEGVLGLFVDDALVAPVAQVVHRGGPGDVIVQAVGVAVKAVVRAVDIHPTVKDVGLPVRDVLPRGKVRVKGLLFHEKTPLRLAGKAAACRQTVSIFPLYYTPPCPRRQRPFSGGRGQRDRPEFFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0H4</accession>
    <name>R6Y0H4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27375">
        <property type="protein sequence ID" value="CDD27375"/>
        <property type="gene ID" value="BN815_00608"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021686">
        <property type="entry name" value="DUF3268"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11672">
        <property type="entry name" value="DUF3268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="136" mass="15423" checksum="FC7DF3FDFECEE0ED" modified="2013-07-24" version="1">MKKKRKKPMRCPYCGAPVVYRSADGIYQNNKNGAMLYVCSRYPECDAYVRVQPGTTIPLGTLANGDLRALRRETHHYFDKLYTSGRMTKQEAYRWLANFLQAPQSQAHIGYLGEYTCRQVLCACKEMLGRGGAKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0I3</accession>
    <name>R6Y0I3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TraG/TraD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00612</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VirD4/TraG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27385">
        <property type="protein sequence ID" value="CDD27385"/>
        <property type="gene ID" value="BN815_00612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003688">
        <property type="entry name" value="TraG/VirD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02534">
        <property type="entry name" value="T4SS-DNA_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="467"/>
            <end position="506"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="482"/>
            <end position="506"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="506" mass="56157" checksum="600E360D30C16BA6" modified="2013-07-24" version="1">MGERELKDVLEVQPLAQADGILLGKRNGKAVCLPADTRLNRHIAVFGASGTGKSRGFIRPALFNIIQRGESAIITDSKGELYADTAELFRQHGYEVKVFNLVNPEHGDSWNCMSDLGGDTLLAQVLTNVIIGNTSSGKTDHFWDNGEGNLLKALILYVDLDPTRSPEEKNLPEVYEMLIRHSAAQLTALFERLPLDHPARGPYRLFSQASDTVQSGIVLGLGTRLQVLQNEAVAGILRRSDIDLTAPGKRKCATFVVLSDQEATMAFLSSLFFSFLFIKLTRFADSTPDMRCPVPVNLILDEFNNIGKLGGAADGSDFARTLSVVRSRAIYVTLAVQSLGQLQNRYPNNLWAEIVGNCDLQVMLGCTDDLTAEYFSSRSGDMSIQVNSTMTVRQTMALAQVIPQYRQTQGQGKRRLLTPDEVLRLPNQELLVVIRGHNLLKLEKVDYTELPLSKEIVRSSVLEYRPEQLPDAPQAQAPFSREEESPQEKPLRKPRLYGVSKPPEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y265</accession>
    <name>R6Y265_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00053</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27905">
        <property type="protein sequence ID" value="CDD27905"/>
        <property type="gene ID" value="BN815_00053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="330" mass="38010" checksum="FA5FCAB3492DB2AD" modified="2013-07-24" version="1">MGKKHFLQIALEEMGIFSYNDYKEKIEIWEDFDNRVFQGGQEKIDALRNLVVNYYNGYQYSQLSGQYISVNPQSCHSDLIANYMCLFPKRALIETSALLSYIDMTPHNGESYDLPPNDFMKQYFRFEDLIQHNIAFLYPINTREETHKLDGTIFDSTSIIPLKNVANVSQNGNLSRILQRPDMFYMAFPWLYNARTDDFIEICDKYPSEFDCLANAIEKIAQASNGQTNLQSDVLKELKDALVNIQISYEKKKAALKVKGITTVVGIALTCVPFTVTNYFNNFDPSLLQTILGSASILGSKDILNDFFSLKREGNFNPYWVIWKWKQATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2J2</accession>
    <name>R6Y2J2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01512</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000214">
        <property type="protein sequence ID" value="CDD30278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30278">
        <property type="protein sequence ID" value="CDD30278"/>
        <property type="gene ID" value="BN815_01512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase_AAA_core" evidence="1">
        <location>
            <begin position="26"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="15036" checksum="17596ACF8C77A7CE" modified="2013-07-24" version="1">MEDEAYTNQLLERLELDDKRNKLGKELSKGMQQKLSICCALCHKPRVVIFDEPLVGLDPHAIKELKQIFRELKAGGASVLISTHMIDSVEDYWDVANIMMNGRFAATKLNDGSEGQTLEELFFAITEGAPVPAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2W0</accession>
    <name>R6Y2W0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
            <ecNumber evidence="4">3.4.16.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">BN815_01595</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the peptidase S11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000234">
        <property type="protein sequence ID" value="CDD30368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30368">
        <property type="protein sequence ID" value="CDD30368"/>
        <property type="gene ID" value="BN815_01595"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015956">
        <property type="entry name" value="Peniciliin-bd_prot_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018044">
        <property type="entry name" value="Peptidase_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012907">
        <property type="entry name" value="Peptidase_S11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037167">
        <property type="entry name" value="Peptidase_S11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07943">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00725">
        <property type="entry name" value="DADACBPTASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00936">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69189">
        <property type="entry name" value="SSF69189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 15" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="15">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425462" description="Serine-type D-Ala-D-Ala carboxypeptidase" evidence="15">
        <location>
            <begin position="27"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="domain" description="PBP5_C" evidence="16">
        <location>
            <begin position="273"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="12">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="39643" checksum="313B6F7BD881F194" modified="2013-07-24" version="1">MKKLRFSLLSLAVAAALLLPALPARAEGLELTAPSAVLMEASTGRVLFEKDPHALRSCASITKVMTLCLVFEALDSGRLSLDQTLTASAHAASMGGSDIWLEEGEAMSVDDLIKATVIMSANDAAVVLAEAVSGSEEAFVAQMNEKAQQLGMNDTVFKNCNGLDEEGHVTSAYDVALMSRELIRHEKVFDYTLTWMDSVRNGETQLVNTNKLIRSYQGITGLKTGTTGQAGSCITATAERNGLSLIAVVLGADSTDHRFQDAAALLDYGFAGWKATVPEAPALEPVPVARGMAPTVEAQVGESPSLLLEAAETGSVETEVLLEELTAPIKAGDVIGTVRYSLGGEVLAEVDITAAGDVEAVTFASALGYLFRGLFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3G8</accession>
    <name>R6Y3G8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00840</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28405">
        <property type="protein sequence ID" value="CDD28405"/>
        <property type="gene ID" value="BN815_00840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041532">
        <property type="entry name" value="RlmI_PUA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17785">
        <property type="entry name" value="PUA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PUA_3" evidence="5">
        <location>
            <begin position="10"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="195"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="404" mass="45290" checksum="295B41282E4A1EDE" modified="2013-07-24" version="1">MKTERPYPFVTIDARGTKRAQEGHPWVFDNEITAQEGTPEDGALCDVRSPKGRYLGTGYYNSHSKIRVRLLSQNANDKFDQAFFARRAQYAWDYRKTVMGPDVDSCRVIFGEADRFPGLTVDKFGDILVTQTLCLGTELRKDWIFPALVQAMEAGGQPIRGIYQRNDVKIRELEGLEQNKGWYPLEGKPLPESTQTEIVENGIRYLVDFENGQKTGFFLDQKYNRAAAARIAPGKSVLDCFTHTGSFGLNCAKAGAKRVHSVDVSETAIACAKENAARNGLSVEYEVANVFDLLPSLTPGEYDYIILDPPAFTKSGKTVKNAERGYKEINYRAMKALPRGGYLATCSCSHFMTDALFRKMLQSAASDAQVELRLVEARAQGPDHPILWNVPETDYLKFYIFQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Z0</accession>
    <name>R6Y3Z0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30693">
        <property type="protein sequence ID" value="CDD30693"/>
        <property type="gene ID" value="BN815_01898"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="390"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="414"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="448" mass="48650" checksum="173E0FCF27411856" modified="2013-07-24" version="1">MEKDYLIRRRPIAALLIFALPMMLGNFFQQLYTMADSAIVGRLVGEEALAAVGASYSLTNVFISIAIGGGVGASVITGQTFGRRDFSRMKRSVSTALLSFLAISIVLGGVGLVFSRQIMVLLRTPANILDDATTYLNIYFLGLPFLFMYNVLSSMFNALGRSRIPLYLLIFSSVLNVALDIYMVGPLGMGVAGAAWATLLAQGISAVLSFCIFLKELKTYPGKLEGRLFDWEELKNMARVALPSILQQSTVSIGMMLVQSVVNSFGSQMLAGYSAAMRIESVCIVPMSAMGNAISSYTAQNIGAGRQDRVRAGYRVSYGIVFALAAAICLVVQLLAGQLISLFLEDGSTVAFETGMACTRFMAWFYALIGLKMISDGVLRGAGDMTMFTVANLVNLGLRVVLAVTLAPRFGIQFVWMAVPMGWLVNYLISFFQYRTGKWAKLHKASSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y407</accession>
    <name>R6Y407_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 14">Crossover junction endodeoxyribonuclease RuvC</fullName>
            <ecNumber evidence="11 14">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Holliday junction nuclease RuvC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Holliday junction resolvase RuvC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">ruvC</name>
        <name evidence="15" type="ORF">BN815_01913</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 14">Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 14">Belongs to the RuvC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="11 14"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30708">
        <property type="protein sequence ID" value="CDD30708"/>
        <property type="gene ID" value="BN815_01913"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16962">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00034">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020563">
        <property type="entry name" value="X-over_junc_endoDNase_Mg_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002176">
        <property type="entry name" value="X-over_junc_endoDNase_RuvC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30194">
        <property type="entry name" value="PTHR30194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02075">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00696">
        <property type="entry name" value="RSOLVASERUVC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00228">
        <property type="entry name" value="ruvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01321">
        <property type="entry name" value="RUVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 14" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 14" id="KW-0540">Nuclease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="14">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="18726" checksum="96F5B17B0F325A3F" modified="2013-07-24" version="1">MRILGIDPGYAIVGYGVIEAGGGRYRPVEYGAITTPAGQDFGQRLVEIYQGMGEILTRLKPEAAAVEKLYFTNNKTTGIGVAEARGVILLALAQHGVPLYEYTPMQVKQAVTGYGKAVKPQVQEMTRRLLGLQKVPQPDDTADALALAICHGQAAGSPLRKTLLQRGHKPEKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y448</accession>
    <name>R6Y448_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28630">
        <property type="protein sequence ID" value="CDD28630"/>
        <property type="gene ID" value="BN815_00900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="15"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="329" mass="37904" checksum="8179F987A924F11B" modified="2013-07-24" version="1">MPRVEVTIGKNDGGQRLDKFLTKSYPNLPQSMLYKAIRKKDIKINGKRCENSTRLQEGDVVSLFLKEEFFQKEERPEDFLKAPKKLSIVYEDGNLLLLDKKPGLIVHPDENYHFDSLIARVQHYLYDKGEYDPKAENAFAPALVNRIDRNTGGIVMAAKNAEALRILNQKVKDREMHKFYLCVVCGHLKEKEATLTGYLEKNEAQNRVYVSQRPKEGAKTIRTRYRVLEERRGFSLVEVELLTGRTHQIRAHFASIGHPLAGDGKYGKNAVNKQTGFPYQALYSYKLRFDFHTDGGALQYLHGREFTAEDVWFLPEFYAMPCLEGKNHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4M6</accession>
    <name>R6Y4M6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00968</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28820">
        <property type="protein sequence ID" value="CDD28820"/>
        <property type="gene ID" value="BN815_00968"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="19625" checksum="E573AA3A29405FE6" modified="2013-07-24" version="1">MERAVTVRSALPEDGQVLFAMNRAFNGEGVASPQEAALALAHPGPERVLLAFVAGEPAGFLCGLLKRSACYSRPSAEVTELYVCPGCRRQGVXXPAAAARAWPGSCWRLSWTPAAKRAWRPSRCSPGRTTPPPRPCTKKWAFPPAGRSTSSRGCEYGSKKSPGFSGGFPVYQAFALQSARRFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y531</accession>
    <name>R6Y531_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Starch synthase</fullName>
            <ecNumber evidence="4">2.4.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02167</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Synthesizes alpha-1,4-glucan chains using ADP-glucose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + ADP-alpha-D-glucose = [(1-&gt;4)-alpha-D-glucosyl](n+1) + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18189"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9587"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.4.1.21"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.21" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000358">
        <property type="protein sequence ID" value="CDD31013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31013">
        <property type="protein sequence ID" value="CDD31013"/>
        <property type="gene ID" value="BN815_02167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033201">
        <property type="term" value="F:alpha-1,4-glucan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004373">
        <property type="term" value="F:glycogen (starch) synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009011">
        <property type="term" value="F:starch synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011835">
        <property type="entry name" value="GS/SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013534">
        <property type="entry name" value="Starch_synth_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08323">
        <property type="entry name" value="Glyco_transf_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02095">
        <property type="entry name" value="glgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_5" evidence="9">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="8">
        <location>
            <begin position="90"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="277" mass="31259" checksum="3B1D0DF2A585CBB8" modified="2013-07-24" version="1">MKGAIECANWVSTVSPTYAQEILDPWFAHKLDPILRERSWKLSGILNGIDTENYNPATDPNIYAHYSREDRANKAVNKQKLQERLCIEQNPDLPLVGMVTRLVSHKGLDLVKEGVDNVMEYSNAQFVVLGSGDLEYENYFKWMQEKYPGRFVMCLGFVPELSRKIYAGADIFLMPSKSEPCGLSQMIALRYGTIPVVRETGGLKDSITDSGDGKGNGFTFKTYNTGDMLHSLHRAIYAYNSDKEGWGVLVDRAMGCDNSWGRSANEYIRLYKQILKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y568</accession>
    <name>R6Y568_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31073">
        <property type="protein sequence ID" value="CDD31073"/>
        <property type="gene ID" value="BN815_02226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="22905" checksum="50A83126320F13A4" modified="2013-07-24" version="1">MASIQIQWLGHSCFRVECQGYAVVLDPFEPGSVPGLRDIRQTADQVLCSHQHHDHNYRAGVALRQDGPANPFTITALPSFHDGCGGAKRGPNTIHLLEAQGLRVAHLGDLGAMPAPEVVERLQNLDAVLVPVGGFYTVGPKEAKEIVDALQARVVIPMHYRSDAFGFDVLAPVEDFLELDSRWMRYETDTLEIHENMRHSVAVLTYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5G8</accession>
    <name>R6Y5G8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transcriptional regulator CtsR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02332</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CtsR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31188">
        <property type="protein sequence ID" value="CDD31188"/>
        <property type="gene ID" value="BN815_02332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.56.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008463">
        <property type="entry name" value="CtsR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041473">
        <property type="entry name" value="CtsR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041908">
        <property type="entry name" value="CtsR_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040465">
        <property type="entry name" value="CtsR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041902">
        <property type="entry name" value="CtsR_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40028">
        <property type="entry name" value="PTHR40028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05848">
        <property type="entry name" value="CtsR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17727">
        <property type="entry name" value="CtsR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0678">Repressor</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="CtsR" evidence="7">
        <location>
            <begin position="2"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="CtsR_C" evidence="8">
        <location>
            <begin position="75"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="16471" checksum="F92B45FAFECC9D86" modified="2013-07-24" version="1">MRISDSVANYILNLLNQENGTAEIQRNELASYLGCVPSQINYVLTSRFTPEQGYIVESRRGGGGYIRITRMRLSKSDMIMHIVNSVGDSLDAATARAMTANLQQNTMLDASAARLIQAACSEQALAAVPKEIRDTVRAAIYKNMLLATRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5R6</accession>
    <name>R6Y5R6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01099</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29230">
        <property type="protein sequence ID" value="CDD29230"/>
        <property type="gene ID" value="BN815_01099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="191" mass="20519" checksum="9AB9C4B17B90E2A3" modified="2013-07-24" version="1">MKQERKRDAVWFGAAFGLVLLVALAFGLVQLFAGGWGEQASLPQELGLDGTLEKPAAFWDGHGGFHGDGTAYWEIAFSPEEAAALEKSLQGAQGWQPLPVDGDAQGPLPVDGDAQALLYGAERQGHYSGPYLTGQDGEALLPPVEEGYWFFYNKQTDSYTAAGALNQPSLNFTAAVYDSQSHILYCGELDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5R8</accession>
    <name>R6Y5R8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Uronate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00226</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glucuronate = D-fructuronate</text>
            <dbReference type="Rhea" id="RHEA:13049"/>
            <dbReference type="ChEBI" id="CHEBI:58720"/>
            <dbReference type="ChEBI" id="CHEBI:59863"/>
            <dbReference type="EC" id="5.3.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; pentose and glucuronate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the metallo-dependent hydrolases superfamily. Uronate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.12" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000393">
        <property type="protein sequence ID" value="CDD31288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31288">
        <property type="protein sequence ID" value="CDD31288"/>
        <property type="gene ID" value="BN815_00226"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00246"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008880">
        <property type="term" value="F:glucuronate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006064">
        <property type="term" value="P:glucuronate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003766">
        <property type="entry name" value="Uronate_isomerase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02614">
        <property type="entry name" value="UxaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="14042" checksum="E189E628F6F4EFA1" modified="2013-07-24" version="1">MPKSILYTLNASDNEKLIAAAGCFHDGATAGKVQFGSAWWFNDHLDGMAKQLRDLANIGVLSRFVGMLTDSRSFLSYPRHEYFRRILCRVIGGWVADGQAPADYELLGAMVQDICFHNVANFIGIQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5V5</accession>
    <name>R6Y5V5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31328">
        <property type="protein sequence ID" value="CDD31328"/>
        <property type="gene ID" value="BN815_00263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025466">
        <property type="entry name" value="DUF4317"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14199">
        <property type="entry name" value="DUF4317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="380" mass="42609" checksum="D3E8BF559C9159BF" modified="2013-07-24" version="1">MNEKEVAEIRRRFKPEKSAVTHVRGCYVSAQGEVVSHFDQSLALMPQEEGENLMNLLRKTLSGGLGRNLLNLSFSTAQVVDSPEHKLLMALRDSQLQDQGAVEAFFQQVAASFRLEDIGYLILLAYDSYDVPYRGKDGGSLEDASETVYSYILCSLCPVKETKPVLSYRVPENLFRNREVDWVIAPPEAGFLFPAFDDRCANLYEALYYTKNTGESHQELVDTLFRQELPPPADVQKETFQSLLTETLGEDCSLDVVQSVQSRLVGMMAQHKEDKDPEPLVLSKGALDMVLSTSGVEEEHREAFSQRFEEAFGPDARLAPQNLVDKRKLEVRTPDVKIQVDPQRGDLVETRIIDGVGYVLIRAEGGVEVNGVPVRFSQED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y643</accession>
    <name>R6Y643_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31408">
        <property type="protein sequence ID" value="CDD31408"/>
        <property type="gene ID" value="BN815_00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8118" checksum="46FAD2304CA6131D" modified="2013-07-24" version="1">MNLREVVPQVLEALRQSRACLEDGPTVLVLSHKGKRVQVQVTQEGDWLKLSTGRVWKRTVKLPARALGEKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y685</accession>
    <name>R6Y685_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sigma70_r4_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31448">
        <property type="protein sequence ID" value="CDD31448"/>
        <property type="gene ID" value="BN815_00348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r4_2" evidence="1">
        <location>
            <begin position="231"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="287" mass="33361" checksum="89EA9B094AB26FA4" modified="2013-07-24" version="1">MSKPKAQTQVIFPFGSNIRYLPLVYLIPADQIVRYPTLNALPRCLSEIAASEPMMDLLDSDAFLKDIMDAIAALAFPHFGFGGWKEHYTGYCPVWRLSYALPLWASLIDQECGWGLQLLFRMKPGTQIPFPDADQVRELFAHVVKRAITEQGWQPILDIVREMPCDEDFEKWDTNARKDFLRRWYHTRSKKVQTVSLEGMLENNDDDSPIFHIPDPNQNVEEYVIAKDFVERFLETLPQKDRQIVELRQDGFTYEEIADKLGYKNHSGVIKRVEAVKKKLQKYRCSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y778</accession>
    <name>R6Y778_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PF14238 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00522</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000018">
        <property type="protein sequence ID" value="CDD27154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27154">
        <property type="protein sequence ID" value="CDD27154"/>
        <property type="gene ID" value="BN815_00522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025641">
        <property type="entry name" value="DUF4340"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14238">
        <property type="entry name" value="DUF4340"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425302" evidence="2">
        <location>
            <begin position="37"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4340" evidence="3">
        <location>
            <begin position="99"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4340" evidence="3">
        <location>
            <begin position="266"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="508" mass="54836" checksum="5A190C6BE66324CC" modified="2013-07-24" version="1">MKKNIRYLIIMLAVLVVLGGGAAVLLLTQPAADEDASSSSLVASEMVTDRETSEVATVTVENPNASYVMVPVDDGTATSSEESSSSEESSSSSTSVDFTIDGYQSYDVDISQVTAAVNMAVSIEASKNLGEQEDLAQFGLSGVGAAKVDIQYTDGTSDSFVMGNEAGETSGRYLLKDGVVYITASYSSGLLETPFYFFETDVYTVADRVEETVDSEGSSSTSTLEDVLYHMELSGANAAEPIVIDYDSSKVSSYLITQPVMAESGTNTLTEIATALKSLSAQAVVAAGRTQETLEQYGLAEPYAQITFDMNGEEHTLAVSEANSSGNRYLIADDIDLVYEVTGDSVNAWAEAGLMDLRMSYVWLPNINNVSALTMRVADGTEYRFDVEQVVNEEDSTEDKTVYDLVVTNGDGQSVDYENYQPFYQMVLSQAVLSTDAATYDAENLVLEITFEYFDGSDPDVITYCVAEGQDQRYAALLNGGYNGIVRRSDVDTLLEKLPLVYQDQSVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7G2</accession>
    <name>R6Y7G2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sporulation protein YabP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27239">
        <property type="protein sequence ID" value="CDD27239"/>
        <property type="gene ID" value="BN815_00549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022476">
        <property type="entry name" value="Spore_YabP/YqfC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038705">
        <property type="entry name" value="YabP_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07873">
        <property type="entry name" value="YabP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="9991" checksum="F0A13C9C97494D68" modified="2013-07-24" version="1">MAEAQKPLRHHSLQLEDRAVLRATGVSRVDFFSEELITAQTDQGQLHIKGEGLHIENLDSASGELLARGKVAAISYTENGPALSFFGRLFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7T7</accession>
    <name>R6Y7T7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LysR substrate binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01326</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000185">
        <property type="protein sequence ID" value="CDD29975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29975">
        <property type="protein sequence ID" value="CDD29975"/>
        <property type="gene ID" value="BN815_01326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="33039" checksum="F7EC1FA5F603F0F6" modified="2013-07-24" version="1">MDLNFEYYKVFYYVSKYGSLTRAANVLMTSQPAVTRTIHNLESELGCRLFIRSKKGVELTPEGRVFYEYISAACAQIFKGENELASMVGLENGTICISATETALHCCLFQAVEQFTKEYPEVRFKLLNNSTAASIQALKTGKADLAVVSSDPAAAPPLRVKTLRGYQEILIGGQKFQHLKGEKLSLRELANCPWISHTSGSITRDFFNQYFQEHGLSFQPDIELATTDMILPAVRHNLGIGFIPAEFATEDLRQGTVFEIAVEEKLPQRSIQLVYDTEYPQSVASKTFLEFLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8I9</accession>
    <name>R6Y8I9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00662</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27579">
        <property type="protein sequence ID" value="CDD27579"/>
        <property type="gene ID" value="BN815_00662"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="261"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="31676" checksum="1E3822CFCFF9945C" modified="2013-07-24" version="1">MEMGTKTKKKLSENILEKFSMDFLRNQVLKNAYGNNDTVIAKLDPRILIMWYLFFGLVPWFVNDLWFLMACFLLVVVTTKLARVAGLVLLVFAVGVFSQTGYLLLVSLLFGGNASTIAPLLVLSLKVATCSLASVTVFSGLDPDKLSNGLMWFGCPERLSFSISYAYRVLPMLMEEFQNILLSFRLRGNPPSREGLWGKVKYLFYQVKVVMHAFYPLMLNTAKRSRTTVEALEIRGYRNAATNKAVKRMKLATLKVSTNDLLFLAISLLWISLAILLSTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Q8</accession>
    <name>R6Y8Q8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01549</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000218">
        <property type="protein sequence ID" value="CDD30315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30315">
        <property type="protein sequence ID" value="CDD30315"/>
        <property type="gene ID" value="BN815_01549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7895" checksum="A9D4C67ED231E65F" modified="2013-07-24" version="1">MLREALRQNLKKFRKEAHFSQEQIARQLGVNRATYTYYETGKTTPSVEDLYLLSQLYGRAMEEFFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8U2</accession>
    <name>R6Y8U2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidophosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01579</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000222">
        <property type="protein sequence ID" value="CDD30345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30345">
        <property type="protein sequence ID" value="CDD30345"/>
        <property type="gene ID" value="BN815_01579"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="85"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="28875" checksum="99716827BA9731EF" modified="2013-07-24" version="1">MAVASESCALDSCGFRFVRDIQPGEAVLIEDGKVVHSEICLRAPHSLCVFEYVYFARPDSVLDGLSVYEARLNMGRMLAREHPVEADLVCGVPDSGLEAAMGYSLESGIPIATGFVKNRYIGRSFIFPTQAQREHAVDLKLNPLRAAVEGKRVVLVDDSIVRGTTCDRIVAAMRRAGAKEVHLRISSPPFRHTCYFGTDIGSEENLIANQLSIPEIEKKTGADTLGYISVAGLLEACRGSRLGLCTGCFTGKYATQVEAASKDALEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8W6</accession>
    <name>R6Y8W6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endolytic murein transglycosylase</fullName>
            <ecNumber evidence="7">4.2.2.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peptidoglycan polymerization terminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mltG</name>
        <name evidence="9" type="ORF">BN815_01592</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transglycosylase MltG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000233">
        <property type="protein sequence ID" value="CDD30365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30365">
        <property type="protein sequence ID" value="CDD30365"/>
        <property type="gene ID" value="BN815_01592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008932">
        <property type="term" value="F:lytic endotransglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02065">
        <property type="entry name" value="MltG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003770">
        <property type="entry name" value="MLTG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30518">
        <property type="entry name" value="PTHR30518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02618">
        <property type="entry name" value="YceG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00247">
        <property type="entry name" value="TIGR00247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="7">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="430" mass="47708" checksum="C7B1F038C2D7A61D" modified="2013-07-24" version="1">MNHGQNTGGGENPNRATGNFKLNIDERDLATGNIDLPERRSQPPRPEYSVNKAYLTEKERRAERKAHKKRDKLKARKNRRVFALVWVCMVLLVSFTLASYLIKGSNDFFAVGRSQGTTSVTIPENVTLDDLTQILYEAGAIKEPEFFSLFCMVTVDDDEMEYFQPGTYNLDTDLDYQAIISTLQGGNQTREEVRVTFPEGTTALEAAALLEENGVCSQEDFLAAINSTDFDSYEAIAPIAAITGKYYKLEGYLFPDTYDFYKGEEIDSVVGKLVNNFQNRTADLQEDIAASGMTLDQVVTLASIIQREAANTQDMANVSAVLHNRLAFGAEYGIYRLQCDSTTFYPYKREEDVPASGALAYGNYDTYEVQGLPAGAICNPGLDAIEAALHPNTEGDAPYYLYFCHASDGTAYYATNEADHQYNLQLAGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Y1</accession>
    <name>R6Y8Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">E1-E2 ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00710</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000061">
        <property type="protein sequence ID" value="CDD27749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27749">
        <property type="protein sequence ID" value="CDD27749"/>
        <property type="gene ID" value="BN815_00710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1278">Translocase</keyword>
    <keyword evidence="1 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="620"/>
            <end position="641"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="647"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="685"/>
            <end position="706"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="712"/>
            <end position="729"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="741"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="768"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="816" mass="88481" checksum="32DF7BBAD98196BB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y910</accession>
    <name>R6Y910_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Putative N-acetylmannosamine-6-phosphate 2-epimerase</fullName>
            <ecNumber evidence="6">5.1.3.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ManNAc-6-P epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nanE</name>
        <name evidence="7" type="ORF">BN815_01626</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>an N-acyl-D-glucosamine 6-phosphate = an N-acyl-D-mannosamine 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:23932"/>
            <dbReference type="ChEBI" id="CHEBI:57599"/>
            <dbReference type="ChEBI" id="CHEBI:57666"/>
            <dbReference type="EC" id="5.1.3.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Amino-sugar metabolism; N-acetylneuraminate degradation; D-fructose 6-phosphate from N-acetylneuraminate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the NanE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.9" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30405">
        <property type="protein sequence ID" value="CDD30405"/>
        <property type="gene ID" value="BN815_01626"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00629">
        <property type="reaction ID" value="UER00682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047465">
        <property type="term" value="F:N-acylglucosamine-6-phosphate 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009385">
        <property type="term" value="F:N-acylmannosamine-6-phosphate 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006051">
        <property type="term" value="P:N-acetylmannosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019262">
        <property type="term" value="P:N-acetylneuraminate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04729">
        <property type="entry name" value="NanE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01235">
        <property type="entry name" value="ManNAc6P_epimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007260">
        <property type="entry name" value="NanE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36204">
        <property type="entry name" value="PTHR36204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04131">
        <property type="entry name" value="NanE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="236" mass="25319" checksum="A579616B17CE3485" modified="2013-07-24" version="1">MTKQTVLNQLYRGIIVSCQALPGEPLHGRGMMAAMAQAAKEGGAVGIRANGVEDIAAIRRQVALPVIGIVKAEYPGSPVYITPTEAEVEALLQAGAEIIALDATARPRPQGQSLEELFLPLRQRYPGQLFMADCATLEEARRAQALGFDLVGTTLCGYTQDTLGTPIPSLPLLEAMTRELSVPVIAEGGIWEREQLRQVFAYPVHAAVIGTAITRPREITRRFVEAAGAQEGQYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y927</accession>
    <name>R6Y927_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Rhamnulokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01641</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30420">
        <property type="protein sequence ID" value="CDD30420"/>
        <property type="gene ID" value="BN815_01641"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008993">
        <property type="term" value="F:rhamnulokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019301">
        <property type="term" value="P:rhamnose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07771">
        <property type="entry name" value="FGGY_RhuK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013449">
        <property type="entry name" value="Rhamnulokinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0684">Rhamnose metabolism</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="2">
        <location>
            <begin position="4"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="3">
        <location>
            <begin position="241"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="481" mass="52900" checksum="A98AAF83EA33FC8A" modified="2013-07-24" version="1">MSRVLAFDFGASSGRAILGAYENGELSYQEVHRFENNPRDKDGHFRWDFEDLLANVRLGAQKAGPVDSLAFDTWGVDFGLLDAQGRLLEDPVHYRDQRTAGLVEEAFQSLPAGALYGATGTQILNINSLYQLLALQRQEPQLWEKAHRLLFMPDLLAWALCGAQACETTIASTSQLLDPCSQSWSQQVLSAFRIPQELFAPLVKSGTVVGEYQGAKVIAAAGHDTQCAVAALPAPEKDAAFLSCGTWSLLGCELEEPVLTEQSRVLGLSNEIGANGKVNYLKNIIGLWLIQESRRQWRREGQEYSYADLERLALEAQPLRSFIDPDAPEFAPPGDIPGRVRDFCRRTGQPVPETVGQVMRCIYESLALKYRFALGQLTQATGKKFSALHVLGGGTKDGLLCRMTAACTGIPVIAGPVEATALGNILIQLKALGQLESIAQGRELIARTEKVTRYEPQDHAGWEASYQTYETILRHADTENF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9P3</accession>
    <name>R6Y9P3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-xylulose kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01831</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000285">
        <property type="protein sequence ID" value="CDD30620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30620">
        <property type="protein sequence ID" value="CDD30620"/>
        <property type="gene ID" value="BN815_01831"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_C" evidence="1">
        <location>
            <begin position="24"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="275" mass="29626" checksum="8B479175EFD051E6" modified="2013-07-24" version="1">MVGGAGDNAAAAVGTGVVRDGKAFTTIGTSGVVFAHTDNISIDPKGRVHTFCCAVPGAWHVMGVTQGAGLSLKWFRDNFCGAEKETALGMGKDPYFLMDQEAERSPIGCNRLLYLPYLMGERTPHLDPDCRGVFFGLSAMHTKWDMLRAVMEGVTYSLRDCMEILRGMGLDIGEMYACGGGGSSPLWRQMLADAYNCPVTTVKSKEGPALGVAILAGVGAGLYPSVQEACDVMIQTNQPQNPIAENVPQYESFYQVYKSLYPALKENFKLLAKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA43</accession>
    <name>R6YA43_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30785">
        <property type="protein sequence ID" value="CDD30785"/>
        <property type="gene ID" value="BN815_01989"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9535" checksum="8EC65AC3668B2EF6" modified="2013-07-24" version="1">MQNWILMAQNSKGQNLRACSQIAEDEIPSLEAANRLADKLEREEPGFVVKEAYRIHKDMSREELEALDFFPHGCLAEVIVFDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAE4</accession>
    <name>R6YAE4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spx/MgsR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ArsC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30895">
        <property type="protein sequence ID" value="CDD30895"/>
        <property type="gene ID" value="BN815_02057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006504">
        <property type="entry name" value="Tscrpt_reg_Spx/MgsR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01617">
        <property type="entry name" value="arsC_related"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13163" checksum="2EDDB3397817BCA4" modified="2013-07-24" version="1">MVFICYPKCSTCKKAQAWLKAQGLDCEVRDIQKDNPTLEELRQWHRQSGLPLKKFFNTSGQQYRALGLKDKLPAMTEEEQLALLATDGMLVKRPVLLAGEQVLVGFQEAQWAQALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN6</accession>
    <name>R6YAN6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">VanW-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02139</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30980">
        <property type="protein sequence ID" value="CDD30980"/>
        <property type="gene ID" value="BN815_02139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022029">
        <property type="entry name" value="PG-bd_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007391">
        <property type="entry name" value="Vancomycin_resist_VanW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12229">
        <property type="entry name" value="PG_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04294">
        <property type="entry name" value="VanW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425248" evidence="2">
        <location>
            <begin position="26"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="domain" description="PG_binding_4" evidence="3">
        <location>
            <begin position="124"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="435"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="471"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="533" mass="56232" checksum="9D28E321804A1834" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAZ2</accession>
    <name>R6YAZ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-glucosidase-related glycosidases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02204</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000366">
        <property type="protein sequence ID" value="CDD31050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31050">
        <property type="protein sequence ID" value="CDD31050"/>
        <property type="gene ID" value="BN815_02204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00133">
        <property type="entry name" value="GLHYDRLASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_3" evidence="2">
        <location>
            <begin position="2"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="19435" checksum="B8BD8AAAC1F38F42" modified="2013-07-24" version="1">MLAGAMAAAVLQGLQENHNVLGCAKHFAANEQETYRRGSAKVKNGLPAFDAVDSILSQRALRELYLKPFQVAVEEGGLHCLMTSFNKMNGTFAGGSKDLCTHILREEWGFDGAVVTDWGDMDIVVDGADAVAAGNDVVMPGGPPVIQQILKGLEEGRLTRQEMEAAVGHLLSMVKRLGRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB54</accession>
    <name>R6YB54_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="7">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="7">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tyrS</name>
        <name evidence="10" type="ORF">BN815_02269</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + H(+) + L-tyrosyl-tRNA(Tyr)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31125">
        <property type="protein sequence ID" value="CDD31125"/>
        <property type="gene ID" value="BN815_02269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00805">
        <property type="entry name" value="TyrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02006">
        <property type="entry name" value="Tyr_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024088">
        <property type="entry name" value="Tyr-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024107">
        <property type="entry name" value="Tyr-tRNA-ligase_bac_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766">
        <property type="entry name" value="PTHR11766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="4 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="9">
        <location>
            <begin position="348"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="7">
        <location>
            <begin position="39"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="7">
        <location>
            <begin position="229"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>L-tyrosine</name>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="408" mass="45736" checksum="AB7AFEFBFC9E7620" modified="2013-07-24" version="1">MGVYEELQARGLLAQVTNEEEIRKVVNNGQATFYIGFDCTADSLTVGHFMALTLMKRLQMAGNKPIALIGGGTTMIGDPSGRTDMRKMLTKEDIDHNAACFKRQMERFIEFGDGPNQAMMLNNADWLLNLNYVELLREVGACFSVNNMLRAECYKQRMEKGLSFLEFNYMIMQSYDFYYMFQHYGCNMQFGGDDQWSNMLGGTELIRRKLGKDAHAMTITLLTDSQGKKMGKTAGNAVWLDPNKTSPFDFYQYWRNVGDADVLKCIRMLTFLPLEQIDEMDAWEGSQLNKAKEILAYELTKMVHGEEEAKKAQEGAHALFGAGADTANMPTTQLAEEDFTDGQIAVLDLLVKTGLASSKGEGRRLIQQGGLTVAEEKVTDINKTFPKADFEAGLVIKKGKKVFHKAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBA1</accession>
    <name>R6YBA1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">TSCPD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02334</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31190">
        <property type="protein sequence ID" value="CDD31190"/>
        <property type="gene ID" value="BN815_02334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023806">
        <property type="entry name" value="CHP03905"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024434">
        <property type="entry name" value="TSCPD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12637">
        <property type="entry name" value="TSCPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03905">
        <property type="entry name" value="TIGR03905_4_Cys"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TSCPD" evidence="1">
        <location>
            <begin position="5"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9277" checksum="5DAE1FD2A5ED8A0F" modified="2013-07-24" version="1">MEIHYTPKGVCSRQIDIVVEDGVIQSVKFTGGCNGNTQGVAALAQGMKVQEYLNRCKGIHCGARPTSCPDQLAQALSQAVEDGRITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBE1</accession>
    <name>R6YBE1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">DNA ligase</fullName>
            <ecNumber evidence="11 12">6.5.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Polydeoxyribonucleotide synthase [NAD(+)]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">ligA</name>
        <name evidence="14" type="ORF">BN815_02384</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the NAD-dependent DNA ligase family. LigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.2" evidence="11 12"/>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31240">
        <property type="protein sequence ID" value="CDD31240"/>
        <property type="gene ID" value="BN815_02384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003911">
        <property type="term" value="F:DNA ligase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00114">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01588">
        <property type="entry name" value="DNA_ligase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001357">
        <property type="entry name" value="BRCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036420">
        <property type="entry name" value="BRCT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041663">
        <property type="entry name" value="DisA/LigA_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018239">
        <property type="entry name" value="DNA_ligase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033136">
        <property type="entry name" value="DNA_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001679">
        <property type="entry name" value="DNAligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013839">
        <property type="entry name" value="DNAligase_adenylation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013840">
        <property type="entry name" value="DNAligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004150">
        <property type="entry name" value="NAD_DNA_ligase_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004149">
        <property type="entry name" value="Znf_DNAligase_C4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00533">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01653">
        <property type="entry name" value="DNA_ligase_aden"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03120">
        <property type="entry name" value="DNA_ligase_OB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03119">
        <property type="entry name" value="DNA_ligase_ZBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12826">
        <property type="entry name" value="HHH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001604">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00292">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00532">
        <property type="entry name" value="LIGANc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52113">
        <property type="entry name" value="SSF52113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00575">
        <property type="entry name" value="dnlj"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50172">
        <property type="entry name" value="BRCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01055">
        <property type="entry name" value="DNA_LIGASE_N1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01056">
        <property type="entry name" value="DNA_LIGASE_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9 11 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 11 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 11 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="7 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="4 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11 12" id="KW-0520">NAD</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="BRCT" evidence="13">
        <location>
            <begin position="583"/>
            <end position="662"/>
        </location>
    </feature>
    <feature type="active site" description="N6-AMP-lysine intermediate" evidence="11">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="34"/>
            <end position="38"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="83"/>
            <end position="84"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="425"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="662" mass="73574" checksum="BC9B4EB42FF82192" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBK8</accession>
    <name>R6YBK8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00902</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28634">
        <property type="protein sequence ID" value="CDD28634"/>
        <property type="gene ID" value="BN815_00902"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="16654" checksum="2E60CE09A217B8EC" modified="2013-07-24" version="1">MEIRDLQEEELPQLLALYRHLHPDGWLEEGEAARDIWKTIQALPGYHILVAVEGGEVLSSCTLLIVPNLTHGGRPYGVVENVVTHLSHRGKGFATACLDYARKLAEKQRCYKLMLMTGSKQESTLRFYREAGYRDDQKTAFVQWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBL1</accession>
    <name>R6YBL1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13">Multifunctional fusion protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="12">1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase</fullName>
                <ecNumber evidence="12">5.3.1.16</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="13">Phosphoribosyl-AMP cyclohydrolase</fullName>
                <shortName evidence="13">PRA-CH</shortName>
                <ecNumber evidence="13">3.5.4.19</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="13" type="primary">hisI</name>
        <name evidence="12" type="synonym">hisA</name>
        <name evidence="17" type="ORF">BN815_00905</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12 15">
            <text>1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:15469"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="5.3.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="13">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="13">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 13">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 12 15">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 4/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 12 14">Belongs to the HisA/HisF family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="13">Belongs to the PRA-CH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.16" evidence="12"/>
    <dbReference type="EC" id="3.5.4.19" evidence="13"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28639">
        <property type="protein sequence ID" value="CDD28639"/>
        <property type="gene ID" value="BN815_00905"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003949">
        <property type="term" value="F:1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04732">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01014">
        <property type="entry name" value="HisA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01021">
        <property type="entry name" value="HisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006063">
        <property type="entry name" value="HisA_bact_arch"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023016">
        <property type="entry name" value="Isoase_HisA-like_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026660">
        <property type="entry name" value="PRA-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="SSF141734"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00007">
        <property type="entry name" value="TIGR00007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 14" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 13 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 13 14" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="9 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 12 15" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-0460">Magnesium</keyword>
    <keyword evidence="13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PRA-CH" evidence="16">
        <location>
            <begin position="277"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="12">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD28639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="362" mass="40151" checksum="1A7A3161D6E4A3AA" modified="2013-07-24" version="1">MILLPAIDLHEGKCVRLFRGDYDTAEVVAQDPLSTAKRFQEQGARWLHMVDLDGAKDGKPQNQQLIFDVVENTDLHVEVGGGIRDMDTVEYYLDRGVSRVILGSAALRDPEFVRQAVKRHGKQIAVGIDALDGKVAAEGWLEQSQVDYVDFAKEMESLGVQYLICTDIHQDGTMNGPNLVMLDKLNRAVHCHIIASGGVSSLLDIVSLYDLGLYGAIAGKSLYTGALDLRTAIIACHKISGKSAAGDMPEDELDLYFTKSDLLPAIIQDDDTNEVLMLAYMNRESFRKSLETGYTWFYSRSRKTLWNKGETSGHTQKIVSVFSDCDDDTLLIRVKQKGPACHTGSHSCFFKRLRGEESPKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBN3</accession>
    <name>R6YBN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00275</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000405">
        <property type="protein sequence ID" value="CDD31340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31340">
        <property type="protein sequence ID" value="CDD31340"/>
        <property type="gene ID" value="BN815_00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="39" mass="4441" checksum="1B1D6A236FF8AEEF" modified="2013-07-24" version="1">MTPKKYRDKYYMVEWNIESEPDAPTQDGCGKPPAGPDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBQ0</accession>
    <name>R6YBQ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-glucosidase-related glycosidases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00925</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28699">
        <property type="protein sequence ID" value="CDD28699"/>
        <property type="gene ID" value="BN815_00925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026891">
        <property type="entry name" value="Fn3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002772">
        <property type="entry name" value="Glyco_hydro_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14310">
        <property type="entry name" value="Fn3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01915">
        <property type="entry name" value="Glyco_hydro_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01217">
        <property type="entry name" value="Fn3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="SSF52279"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fn3_like" evidence="2">
        <location>
            <begin position="100"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="203" mass="22430" checksum="3D04E6C1CB3608CE" modified="2013-07-24" version="1">MLLGDYNPGGKLPVSVAHNAGQVPVYYSHPWGSGWHQSESIGFTDYVDCPHRPRYPFGFGLSYTSFAYADLEISREEVPAGESVEIAFTVENTGPVPGDEVAQLYISDVYASMTRPVKELAGFARVHLKPGEKKRLAFTLHTSQLAFLDQDMKWKIEHGQILVEAAASSEDVRLSGSFRIDGDMWIAGKSREFWAGTSAVSIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBX9</accession>
    <name>R6YBX9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28789">
        <property type="protein sequence ID" value="CDD28789"/>
        <property type="gene ID" value="BN815_00959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="212"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="293" mass="29783" checksum="FCC45F9A70286445" modified="2013-07-24" version="1">MRAHADFPGAPGPLCGGAAAVLGGAAAVLPLLWEAPPLAGGPRPLPRRRQQPGPALDAGAVPGGGGAVHGAHLLPGALLHLPAAPGGRGPVERPFPGVWHPILPAGRGGQRQQPGEFKLPGGPLLHRGNRPAGAVPVAGAGGPGRRAAHQPGEGLPEKLCGQRLHRGELGAPVRRGPAGALQPAARPAAPDLAGPVLPAVHAPQQLPLPGFGGERQRQPPVRLHPLRPGGKHRGHRPDGVCGRRLFAVLPLFRGHAHLHAGGVGAFQQPGLLSQPSAVLSFRGLRQQPGVQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCU5</accession>
    <name>R6YCU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PilT protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01050</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29074">
        <property type="protein sequence ID" value="CDD29074"/>
        <property type="gene ID" value="BN815_01050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="2"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="14998" checksum="E33A714C6463B718" modified="2013-07-24" version="1">MRVLIDTNVILDILQKREPFFTDSYRALRRALENDAECLISTSAATDIFYALRKSLGSAQQAKEHIDQLAQVVSFADVQGMDIHTALMRAMPDFEDAVVDAVAERSGASYILTRNIKDFTGSVVPAIFPADFLNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD30</accession>
    <name>R6YD30_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01081</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000129">
        <property type="protein sequence ID" value="CDD29179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29179">
        <property type="protein sequence ID" value="CDD29179"/>
        <property type="gene ID" value="BN815_01081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="26"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="60"/>
            <end position="67"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="26579" checksum="4F35ECBF01A8E6AA" modified="2013-07-24" version="1">MEQEIVINAHHVTMEFRRAQHPAGSLKELLLHRRERPQPFRALEDVSFAVGRGQVVGLVGANGSGKSTLLKIIAGALTPTAGWVEVDREKVQLLTLGTGFDMELTGRENLFLNGALIGRSRAFLEAHYGEIVSFAQLEGFMDQPVKTYSAGMVSRLGFAIATAGDAPEILILDEVLSVGDMFFRKKSEARIRQLLHGGSTVLLVSHSPGVIRENCTQALWLDRGKLRAVGEPKEVCAAYEKSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE23</accession>
    <name>R6YE23_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aspartate--ammonia ligase</fullName>
            <ecNumber evidence="3">6.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Asparagine synthetase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">asnA</name>
        <name evidence="5" type="ORF">BN815_01177</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + L-aspartate + NH4(+) = AMP + diphosphate + H(+) + L-asparagine</text>
            <dbReference type="Rhea" id="RHEA:11372"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58048"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-asparagine biosynthesis; L-asparagine from L-aspartate (ammonia route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the class-II aminoacyl-tRNA synthetase family. AsnA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29504">
        <property type="protein sequence ID" value="CDD29504"/>
        <property type="gene ID" value="BN815_01177"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00134">
        <property type="reaction ID" value="UER00194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004071">
        <property type="term" value="F:aspartate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070981">
        <property type="term" value="P:L-asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00555">
        <property type="entry name" value="AsnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004618">
        <property type="entry name" value="AsnA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30073">
        <property type="entry name" value="PTHR30073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03590">
        <property type="entry name" value="AsnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001555">
        <property type="entry name" value="Asp_ammon_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00669">
        <property type="entry name" value="asnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0061">Asparagine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="4">
        <location>
            <begin position="101"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="333" mass="37520" checksum="1B9699B12671F182" modified="2013-07-24" version="1">MTVLPERYQPALGLYETQKAIGLIKNIFQVKLCAALHLKRVTAPLFVDPATGLNDDLNGVERPVGFDIPAVGIEGQVVHSLAKWKRLALHDYNFFVGNGLVADMNAIRRDEELDNLHSIYVDQWDWEKVIDESTRNEAYLKDTVRRIVSAICGTLDELKWQFSSLDTDLCRDVFFLTAQELEDMYPQLTPKEREGVITKKHKTVFIQQIGGKLKSGKPHDGRAPDYDDWSLNGDLLFWHEPLQCALEISSMGIRVDPESLDKQLSLAGCDNRRELPFHKMLLNGELPLTIGGGIGQSRLCMLLLGKAHIGEVQASLWDEETKRLCKEAGIVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEA1</accession>
    <name>R6YEA1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01205</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29609">
        <property type="protein sequence ID" value="CDD29609"/>
        <property type="gene ID" value="BN815_01205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="9946" checksum="429B308091289F4D" modified="2013-07-24" version="1">MIIKSSTALRNDYGMISDLAHEEAEPIYITKNGEGDLVVMSIEAFEQREETLKLRAKLEAAEQARLSGAPTYTLEESRKRLEAIYQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEG9</accession>
    <name>R6YEG9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH_16 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01232</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29704">
        <property type="protein sequence ID" value="CDD29704"/>
        <property type="gene ID" value="BN815_01232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024760">
        <property type="entry name" value="HTH_dom_conjug_TS-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12645">
        <property type="entry name" value="HTH_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_16" evidence="1">
        <location>
            <begin position="8"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7799" checksum="7D404C4568816AB4" modified="2013-07-24" version="1">MKDREFREVLEKAVRGDKVAMEQIFILYKPMIDHASVVNGKLDEDFRQEIFLHLVTAIPKFAKFMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEL7</accession>
    <name>R6YEL7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29774">
        <property type="protein sequence ID" value="CDD29774"/>
        <property type="gene ID" value="BN815_01261"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="9045" checksum="BA0A70BBC77CAC6C" modified="2013-07-24" version="1">MLMVTAFRLVKCLLWIWRFKTMANKAMNVAKGIGMGVLAGAAVAAVSSKVMNSGHKKASHMRKSAGKAMHSVGNLIGDVEKMLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEN7</accession>
    <name>R6YEN7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00483</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27006">
        <property type="protein sequence ID" value="CDD27006"/>
        <property type="gene ID" value="BN815_00483"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_Synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="349" mass="40559" checksum="8009442E08567A62" modified="2013-07-24" version="1">MVKEISKGTKKVKTFSVGYEEEKYSELPYAQEFSQAVGVPNISNKVSADEFFDAVPEIQYMLDEPLPNPSEIPLYFLAQNARKYVKVVLSGEGADELFGGYPMYLQGGHFAQYTRKVPRPVRKLAGAVAKRLPAFKGKHFIIRGAMEPYQRFMRANYVFTDPAERQKYLKRPITSKAPEEYSKRYFDEVPNLDEPTQLQYVDMHTWMIYDILLKADRMSMANSLELRVPFLDKKMLELSCRIPSRYRADCQSETTKRALRSAALKQLPEKTARMKKLGFPVPLSDWLMEDKYYNKVKAAFTSDIAEKFFVTGELMKLLDDHKAGKAKNMQKIWSFYSFIVWYDQFFVKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEZ1</accession>
    <name>R6YEZ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Dihydroorotate dehydrogenase</fullName>
            <shortName evidence="9">DHOD</shortName>
            <shortName evidence="9">DHODase</shortName>
            <shortName evidence="9">DHOdehase</shortName>
            <ecNumber evidence="9">1.3.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pyrD</name>
        <name evidence="11" type="ORF">BN815_01305</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of dihydroorotate to orotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-dihydroorotate + A = AH2 + orotate</text>
            <dbReference type="Rhea" id="RHEA:18073"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="9">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Pyrimidine metabolism; UMP biosynthesis via de novo pathway.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.-.-" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29919">
        <property type="protein sequence ID" value="CDD29919"/>
        <property type="gene ID" value="BN815_01305"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004152">
        <property type="term" value="F:dihydroorotate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04740">
        <property type="entry name" value="DHOD_1B_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00224">
        <property type="entry name" value="DHO_dh_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033888">
        <property type="entry name" value="DHOD_1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005720">
        <property type="entry name" value="Dihydroorotate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024920">
        <property type="entry name" value="Dihydroorotate_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012135">
        <property type="entry name" value="Dihydroorotate_DH_1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001295">
        <property type="entry name" value="Dihydroorotate_DH_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01180">
        <property type="entry name" value="DHO_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000164">
        <property type="entry name" value="DHO_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01037">
        <property type="entry name" value="pyrD_sub1_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00911">
        <property type="entry name" value="DHODEHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00912">
        <property type="entry name" value="DHODEHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6 9" id="KW-0288">FMN</keyword>
    <keyword evidence="8 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHO_dh" evidence="10">
        <location>
            <begin position="4"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="69"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="191"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="45"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="264"/>
            <end position="265"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD29919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="32180" checksum="3A68D8E9196F8677" modified="2013-07-24" version="1">MADLRVNVAGVEFQNPLIAASGAFGFGHEYNEFYPLSALGGISCKGITIKERPGNPPPRVTETPGGMLNAVGLQNPGVDHFIEHDLPWLSHQGTKIIANVAGNAPEDYCATVEKLNDTCVDMVELNISCPNVKQGGVQFGTTTEGVYGITAEVRKHCKKPLMVKLSPNVTDISEMAVAAESAGADAISMINTLTGMRIDIRTRRPIIRNNTGGLSGPAVLPVALRMVWQASQKVKIPIVGLGGISTWQDAVEMLLAGATALQIGTVLFTDPYAPIKIAQGLSDYMDENGIQSLSELTGGVKPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFY2</accession>
    <name>R6YFY2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Kinase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01492</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30249">
        <property type="protein sequence ID" value="CDD30249"/>
        <property type="gene ID" value="BN815_01492"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004713">
        <property type="term" value="F:protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026870">
        <property type="entry name" value="Zinc_ribbon_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13240">
        <property type="entry name" value="zinc_ribbon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="346"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="50"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="370" mass="40410" checksum="EACD426E77522D59" modified="2013-07-24" version="1">MSQNFCPHCMEEVPPGVDFCPQCGREVHGRAQPHQLPIGTVLKTGKGHSFLFGETKGDGGFGLTYIAKEMSSGKVVAIKEYFPLRCQPQRAGDLSVRPTQAMEEIYRRGMGSFLSEASMLRAVADIPHIVHVLDYFEANGTAYMVMEYLHGVTLKSWMDQGPAVEPLSFLWKVLPLMKSLELLHQAGVIHRDIAPDNIMLMPDGSLVLLDFGCARSMEDNKSMTVVLKPGFAPLEQYQTRGQGPWTDIYALCATVYFCLTGAVPPAAPERLGAVCEEHPDPLLPPSALAPAVPPALGELLLWGMTLQPMSRPKSMGQLAEDLESLLRTLARQEEPPVPPSFWNGPWAKVLLGVGCGLILLLLVLLLGQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG35</accession>
    <name>R6YG35_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01548</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000218">
        <property type="protein sequence ID" value="CDD30314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30314">
        <property type="protein sequence ID" value="CDD30314"/>
        <property type="gene ID" value="BN815_01548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7474" checksum="AF4332A5FE29F6BE" modified="2013-07-24" version="1">MRDFHIPKIPATTNKSIRFPNDVIDKVEEAIRGTDCTFSAFVVEAVRVALENLQEQKERAQQENE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG94</accession>
    <name>R6YG94_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal RNA large subunit methyltransferase H</fullName>
            <ecNumber evidence="1">2.1.1.177</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">23S rRNA (pseudouridine1915-N3)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">23S rRNA m3Psi1915 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">rRNA (pseudouridine-N3-)-methyltransferase RlmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rlmH</name>
        <name evidence="2" type="ORF">BN815_01605</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>pseudouridine(1915) in 23S rRNA + S-adenosyl-L-methionine = H(+) + N(3)-methylpseudouridine(1915) in 23S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10221"/>
            <dbReference type="Rhea" id="RHEA-COMP:10222"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:74486"/>
            <dbReference type="EC" id="2.1.1.177"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA methyltransferase RlmH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.177" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30384">
        <property type="protein sequence ID" value="CDD30384"/>
        <property type="gene ID" value="BN815_01605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070038">
        <property type="term" value="F:rRNA (pseudouridine-N3-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18081">
        <property type="entry name" value="RlmH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00658">
        <property type="entry name" value="23SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003742">
        <property type="entry name" value="RlmH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33603">
        <property type="entry name" value="PTHR33603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02590">
        <property type="entry name" value="SPOUT_MTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004505">
        <property type="entry name" value="MT_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="1">
        <location>
            <begin position="124"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="17085" checksum="AEB76CB6FE6266E5" modified="2013-07-24" version="1">MLAVKLICVGKLKESYWRDAVAEYEKRLRPLCKWELIELPEARLPNDPSPGEIEAALEKEGEQILRHAAGKVYPLCIEGKAVDSPGLAKRLAGAMQSPGAVSFVIGSSHGLSPRVKAAGEGLSMSPMTFPHQLARVMLCEQIYRGFQILGGTKYHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGW4</accession>
    <name>R6YGW4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">Serine acetyltransferase</fullName>
            <ecNumber evidence="4 9">2.3.1.30</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01805</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>acetyl-CoA + L-serine = CoA + O-acetyl-L-serine</text>
            <dbReference type="Rhea" id="RHEA:24560"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.3.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.30" evidence="4 9"/>
    <dbReference type="EMBL" id="CBGU010000283">
        <property type="protein sequence ID" value="CDD30594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30594">
        <property type="protein sequence ID" value="CDD30594"/>
        <property type="gene ID" value="BN815_01805"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009001">
        <property type="term" value="F:serine O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03354">
        <property type="entry name" value="LbH_SAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045304">
        <property type="entry name" value="LbH_SAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010493">
        <property type="entry name" value="Ser_AcTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042122">
        <property type="entry name" value="Ser_AcTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005881">
        <property type="entry name" value="Ser_O-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06426">
        <property type="entry name" value="SATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000441">
        <property type="entry name" value="CysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01172">
        <property type="entry name" value="cysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0198">Cysteine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SATase_N" evidence="10">
        <location>
            <begin position="3"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00018522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR000441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF06426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="227" mass="24762" checksum="555F5EF5E3CDE377" modified="2013-07-24" version="1">MFRTLKEDLDAVMERDPAARSRLEVFFLYSGFKAVRSHRKANWCYRHNLKFLARWISQRSRKKTGIESHPGAQIGRGLFIDHGMGVVIGETTQIGDNCTLYQGVTLGGTGKDTGKRHPTLGDNVLIGAGAKVLGPFTVGDNARVAAGAVVLDAVPEGATAVGVPARVVRINGEKVPAKPPRHPCDDMDQIHVADPVSMELCRLRGEMERLEKRLQELEKAGPTEASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHS0</accession>
    <name>R6YHS0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptide chain release factor 1</fullName>
            <shortName evidence="5">RF-1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">prfA</name>
        <name evidence="9" type="ORF">BN815_00752</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Methylated by PrmC. Methylation increases the termination efficiency of RF1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28076">
        <property type="protein sequence ID" value="CDD28076"/>
        <property type="gene ID" value="BN815_00752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00093">
        <property type="entry name" value="Rel_fac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004373">
        <property type="entry name" value="RF-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00019">
        <property type="entry name" value="prfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0488">Methylation</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="8">
        <location>
            <begin position="229"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="65"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="258"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="5">
        <location>
            <position position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="360" mass="40632" checksum="8E9F1718D62D21B2" modified="2013-07-24" version="1">MFAVFENLHVFESRYEELNLKLYDPATAADRELYARLMKEHKEIEPIVETYRAWRQCGADLSGAKELLEEAADRELKEMAQQEIREKGIELSRLEEELKLLLLPKDPNDEKNVIVEIRGGAGGEEAALFAYNLYRMYTAYAEGKGWKTEIVSLNETELGGFKEVSFLIDGEGAYSRLKYESGVHRVQRVPETEAQGRIHTSTATVAVLPEAEEVDVDIDPKDLQIDTFRSSGAGGQHINKTSSAIRVTHLPTGMVVECQDERSQYKNKEKALKVLRARLLDQERKKASDQVAQERRSQVGTGDRSERIRTYNFPQARVTDHRIGLTLYKLEEILGGSLDEVIDSLVAADRAAQLEASQQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHZ9</accession>
    <name>R6YHZ9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4143 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02163</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000358">
        <property type="protein sequence ID" value="CDD31009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31009">
        <property type="protein sequence ID" value="CDD31009"/>
        <property type="gene ID" value="BN815_02163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4143" evidence="1">
        <location>
            <begin position="5"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="24588" checksum="C9C4F9465CE929E1" modified="2013-07-24" version="1">MEIYENDFSKHNGKVNSGRILMVFRSIVSQLAKSNEKFIYGAVRQGGRARDFEEAIEWLVSAGMLNRIYNVSKMEHPLSAFDKLDQFKLFLFDTGLLKHMAGIDNSAILLKADYQFKGPLTENYVLQQLRGQFEVEPRYYSDKTGEIDFLLQNGTEIIPVEAKGGEDKSAPSFKRYIANRHPEHALRFSKRGYRKDGAITNIPLYLARKTRELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIF2</accession>
    <name>R6YIF2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02323</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31179">
        <property type="protein sequence ID" value="CDD31179"/>
        <property type="gene ID" value="BN815_02323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="97"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="3">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="21918" checksum="F2832013D7A0EEFF" modified="2013-07-24" version="1">MDQVKIGKFIAQMRKEQNLTQRGLADKLSISDKTVSKWERGRGLPEVSLMLPLCGALGITVNDLLTGQRVAEADYQTRAEENMMNLLRENAENKKRMALSVICGCVTVIAVCALVALASFLEVAAGWRVALLALALLTAAAGIAAAAMLEASAGYYQCPNCQELFVPTMGAYVKGYHTLTKRRLKCPHCGKVSMCKHRITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJA9</accession>
    <name>R6YJA9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00903</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28636">
        <property type="protein sequence ID" value="CDD28636"/>
        <property type="gene ID" value="BN815_00903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="54"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="28950" checksum="F08FAD8F75ED7017" modified="2013-07-24" version="1">MDREQLLSQWREEAARGMSGWDFSHIQGRCTVETLPWDYPQVVREFLRPGVRLLDMGTGGGELLLTLGHPYELTSVTEGWEPNLALCQKKLAPLGITVKYYDSEKGMPLPFPDDSFDLVIDRHESYDLSEVRRVLKKNGFFVTQQVGGENDLPLVKRLCQGFSGSFVGFNLENELPRFRQAGFRVMRSDQAYVESRYLDVGAVVFQASVCPWEYPGFSVETSLEALFQMQAQVESLGFVPNLEHRFLIVAKNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJH1</accession>
    <name>R6YJH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00401</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31554">
        <property type="protein sequence ID" value="CDD31554"/>
        <property type="gene ID" value="BN815_00401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="189" mass="20375" checksum="FF080838996E4725" modified="2013-07-24" version="1">MAVELQNVCKAFGEKQVLQDFSHTFPEGELTCVMGPSGCGKTTLLSLLLGLEQPDAGKILGMEGRRKSAVFQEDRLCENASAVSNIRLVNPALSKGEAEAMLRELGLGDSLGQPVRTLSGGMKRRVAILRALAAEYDVLFCDEPFKGLDQATKAQVLDYFLARTQGKTVLVVTHDPEEAKSLGGHTLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJK5</accession>
    <name>R6YJK5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00938</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28741">
        <property type="protein sequence ID" value="CDD28741"/>
        <property type="gene ID" value="BN815_00938"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="49"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="12246" checksum="03ABED38BCBB38EB" modified="2013-07-24" version="1">MSAILRVAGWAALIIGLVWSVVNFIFVGWIALLFWLIVTFFLTVLLFGLVEVLERLEDQELKLLALRDSLEKLMKQDGLLAEGPQQCRRCGTQLPPGGKTCPTCHYVNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKM0</accession>
    <name>R6YKM0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000123">
        <property type="protein sequence ID" value="CDD29096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29096">
        <property type="protein sequence ID" value="CDD29096"/>
        <property type="gene ID" value="BN815_01057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="10261" checksum="B7BCF4D0DD2AEED8" modified="2013-07-24" version="1">MIPAILLAIAVYAVCVVLFKGVSYDDVVMLPKGQALARLFRMRPEEPQRSLPVEGSAQPLPAGEALQEEAPRQAPAPAQAKRARGGKYIPRHMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKZ9</accession>
    <name>R6YKZ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Protein RecA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01112</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000139">
        <property type="protein sequence ID" value="CDD29261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29261">
        <property type="protein sequence ID" value="CDD29261"/>
        <property type="gene ID" value="BN815_01112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013765">
        <property type="entry name" value="DNA_recomb/repair_RecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023400">
        <property type="entry name" value="RecA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45900">
        <property type="entry name" value="PTHR45900"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54752">
        <property type="entry name" value="SSF54752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="70"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="119" mass="12924" checksum="FBE17945F36E747D" modified="2013-07-24" version="1">MYGTGISRTGELLDIAVKLEIVQKAGAWFSYSGERIGQGRDNSKEFLATHPEIADEIEAKVRENVDKLYDKIPGRPAPREVAKPVELPPAEAPAQQTLTPPPANKAAAKKSIDITVDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YL71</accession>
    <name>R6YL71_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01124</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000141">
        <property type="protein sequence ID" value="CDD29326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29326">
        <property type="protein sequence ID" value="CDD29326"/>
        <property type="gene ID" value="BN815_01124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="217"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="324" mass="36453" checksum="51BB58FC3DE3DE88" modified="2013-07-24" version="1">MREDLMRELRRVTEEEEQLLAGGQVDKSLYTSGGGFLIDSDKLLAKGKLITVRPHTRFAAFPMHTHNYVEIMYMCSGQTTHQIEGRPPLTLRTGELLFLNQHASHAVERAGEEDVGVNFIVLPQFFDVALNLIGTDNVLGKFLLSGLRQSGGEMSCLHFRVAEAPTVQNLVENLVWSLVHPQPNARRINQATMGLLLLQLLNYTEDLEEASGNGAVLAALREIEENYRTADLTRLAVELHVSLPYLSAAVHRATGRTFKELLLEKRLSKAAQLLRETRLTTQDIILAVGYENTSYFYRVFRARFGVTPKDYRKKRGGDFLPQAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM79</accession>
    <name>R6YM79_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxyl ate (AIR) carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01244</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000171">
        <property type="protein sequence ID" value="CDD29716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29716">
        <property type="protein sequence ID" value="CDD29716"/>
        <property type="gene ID" value="BN815_01244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039476">
        <property type="entry name" value="P2CMN_synthase_LarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43064">
        <property type="entry name" value="PTHR43064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="1">
        <location>
            <begin position="119"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="248" mass="25750" checksum="412706F5615ED1CB" modified="2013-07-24" version="1">MDQQEIRALLEQVAQGQRSVDEAVLALKMEPFQELGFAKVDNHRGLRQGAAEVIYGAGKTPRQIHDIAASMRQTGEKAILITRMTQEAAQVVGEDLPLSYHEMGRIGIVGEMPAPTGKGTIVVATGGTSDMPVAEEAALTAEVLGNQVTRLYDVGVAGLHRTLSHLEDIMSARVIIAIAGMEGALASVIGGLADCPVIAVPTSVGYGAAFGGLAALLSMLNSCASGVSVVNIDNGFGAGYLASMINHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YN82</accession>
    <name>R6YN82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01347</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30021">
        <property type="protein sequence ID" value="CDD30021"/>
        <property type="gene ID" value="BN815_01347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006235">
        <property type="entry name" value="OAc-hSer/O-AcSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01326">
        <property type="entry name" value="OAH_OAS_sulfhy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="46234" checksum="E644BA1626BC8B65" modified="2013-07-24" version="1">MQDFKPDTLCIHAGYTPKNGEPRVAPIVQSTTYVYESSKEMGDLFDLQAEGFFYTRLANPTLDAVEKKIAALEGGVGAMLTSSGQAANLMAVLNICPAGFHVVSSSAIYGGTFNLFYKTMKEMGIETTFVPPTATLEELRAAMRPNTRAVFAETLANPSLAIADLEVFAQAAHEQGVPLIVDNTFPTPINCRPIEFGADIVTHSTTKYMDGHAVQVGGVIVDSGNFNWDNGKFPMLTQPDESYHGVVYTQQFGKAAYITKARTHLMRDLGAQAAPMNAFLLNLGLETLALRMERHCSNALKVAQYLEADPRVAWVDYPDLEGNPNHALAQKYMPHGTCGVVSFGVKGGREAATKFMDGLEMASVVTHVADLRTCCLHPASTTHRQMSDEQLREAGVAPDLIRLSVGIENPDDILADIDQALEKATK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNF5</accession>
    <name>R6YNF5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized domain HDIG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01379</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30121">
        <property type="protein sequence ID" value="CDD30121"/>
        <property type="gene ID" value="BN815_01379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDc" evidence="1">
        <location>
            <begin position="33"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="24912" checksum="0CF5E9E3A2B9F120" modified="2013-07-24" version="1">MGYNHVTPEDIFRNEEVRCYIQRGNDCLGAIGYTEHGFAHAKKSSDTAREILAALGYPQRDCELAAIAGYMHDIGNTVNRVDHAHSGALMAFSLLNKLDMPPQEIGLVCSAIGHHDEKTAFPVNPVAAALILSDKSDVRRSRVRKDAVLEADIHDRVNYAVEASQLRIEPKKKLCIFTIEIATEICPVMEYFEIFLERMVLCRKAAQTLGLQFELIINGTRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNL7</accession>
    <name>R6YNL7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">Phosphatidate cytidylyltransferase</fullName>
            <ecNumber evidence="12">2.7.7.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_01449</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>a 1,2-diacyl-sn-glycero-3-phosphate + CTP + H(+) = a CDP-1,2-diacyl-sn-glycerol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="2.7.7.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12">Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the CDS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.41" evidence="12"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30206">
        <property type="protein sequence ID" value="CDD30206"/>
        <property type="gene ID" value="BN815_01449"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004605">
        <property type="term" value="F:phosphatidate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016024">
        <property type="term" value="P:CDP-diacylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000374">
        <property type="entry name" value="PC_trans"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01315">
        <property type="entry name" value="CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="12 14" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="11" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 12 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="5"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="76"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="132"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="202"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019373"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="29843" checksum="6076589B4152FF0A" modified="2013-07-24" version="1">MKQRVLSGAILVVFFAAVIVFNRSFPLALNIVVALISATAVLELIRALGLLRKWFLCAPALLTAAVVPFCQNDWEFPVYCLFTLWIFSAMIVYHQETTFKEVGMLYSMVVLIPSALQTLVSLRDLSENHGMFYVLIAVLSAWVADAGAYFAGTFFGKHKLCPTISPKKTVEGAMGGVAVNVIVMLLCGVLFTEFYYQGAVRASYLVLGIIGFFGAILSILGDLSFSLIKRSCHIKDFGQVIPGHGGILDRFDSVIFTAPFVYLLVSYLPLAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNS9</accession>
    <name>R6YNS9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00119</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30271">
        <property type="protein sequence ID" value="CDD30271"/>
        <property type="gene ID" value="BN815_00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="22139" checksum="A071C63CE227E96C" modified="2013-07-24" version="1">MILQTKDLRFSYSKKGAPVLADVSLSLHSGERLGLWAPSGRGKTTLCRLLAGYERPQKGEVLLDGKPLSAYAGPCPVQMVWQHPETVVDPLLPLGKTLAESGMPEQRLLDALHIREGWLTRYPGELSGGELQRFCLARALHPAVKFLLCDESTAMLDLVTQAQIWDFLLREAASRDLGLLVVSHSAALLERVCTRTITLPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP65</accession>
    <name>R6YP65_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01612</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GerABKA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30391">
        <property type="protein sequence ID" value="CDD30391"/>
        <property type="gene ID" value="BN815_01612"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009847">
        <property type="term" value="P:spore germination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004995">
        <property type="entry name" value="Spore_Ger"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03323">
        <property type="entry name" value="GerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005690">
        <property type="entry name" value="GerBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="371"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="406"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="485" mass="53087" checksum="B6680E1B889BB419" modified="2013-07-24" version="1">MQSLSTSLEENKAYFQGRFAHSMDFITREFTLAGRKAALFAVDGLINKEIIALSVMEPLLKTQDYPPAPQAMLAHIERAVLSAAELKHERDLEKLLTLLMSGFVLLCVDGCDDGLVSGVQGFAYRGPQEPQNEVMQRGAKDGFTESNQLNMAMIRRRMKNPDLKFQPLEVGSQSHTPVVLCYLEGAAAPKLLRQVRQVLEDCPLQTVLGAGYLTGFLDKGRVFSGVGMTERPDVVCGKLEEGRVALLVEGTPSVILAPFLFVENFQTLDDYLTRPFYGTFIRWLKYIAFFLSAFLPGAYVAVVVHHPELLPQGLLLEIARAQAQTPLPLMVETLTLYFLYEVLREAGLRAPRSLSATVSIVGGLVLGDTAVAAGLVSAPSLLVVALTAIAGYAVPRLYEPLSLLRLAFLLLGDFLGIWGIMAGLAFLLLDLCGTESFGVPLLAPVSPYNGRLAWRDVFARAGWPRLAKSQALVQNMPGSNDTQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPF3</accession>
    <name>R6YPF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Small GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01678</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000248">
        <property type="protein sequence ID" value="CDD30461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30461">
        <property type="protein sequence ID" value="CDD30461"/>
        <property type="gene ID" value="BN815_01678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041095">
        <property type="entry name" value="EFG_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14492">
        <property type="entry name" value="EFG_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="5">
        <location>
            <begin position="3"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="647" mass="70605" checksum="8087A770EED26DA2" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPI9</accession>
    <name>R6YPI9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Dipeptidase</fullName>
            <ecNumber evidence="4">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01707</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an L-aminoacyl-L-amino acid + H2O = 2 an L-alpha-amino acid</text>
            <dbReference type="Rhea" id="RHEA:48940"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:59869"/>
            <dbReference type="ChEBI" id="CHEBI:77460"/>
            <dbReference type="EC" id="3.4.13.19"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the peptidase C69 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000261">
        <property type="protein sequence ID" value="CDD30491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30491">
        <property type="protein sequence ID" value="CDD30491"/>
        <property type="gene ID" value="BN815_01707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070004">
        <property type="term" value="F:cysteine-type exopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016805">
        <property type="term" value="F:dipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005322">
        <property type="entry name" value="Peptidase_C69"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12994">
        <property type="entry name" value="PTHR12994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03577">
        <property type="entry name" value="Peptidase_C69"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0224">Dipeptidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="486" mass="54552" checksum="76D5B09CEBF7A72E" modified="2013-07-24" version="1">MPCTTILVGKKASHDGSTIIARNDDGGFEAKRLLAHPAREKASTYKTVISHLTVELPGNAMRYTDCPNVTKTNGVWPACGINEANVAMTATETITSNARVIGADPYVRYQKKKNRSAKEIPGGIGEEDLVTLVLPYIHSAREGVLRTGALLEQYGTYEPNGMAFADAGEVWWLETIGGHHWIARRVPDDRVVIMPNQFGLDHFDFADAYGEQKEHLCSQDLREFVEKYRLALDTGADFNPRLAFGSHSDADHIYNTPRAWFMARYFLPRTYKWEGDNADFTPESNDIPWSFVPEHKVTVEDVRYLLGSYYQGTPYNPYDKNAACKGKYRTIGVPNSDVCGIMQIRGTLPEAIQGVQWLSMGGSGFTACFPVYANVTEFPKYFSGTTETVSTDSMYWHSRLIAALTDAHFGNALLFDERYVNAVMNRGQQFLYEYDEKILQGEPVEILKEANSKIAGMVKEESDKALSQILKNASEHMKIRYHRGDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPZ2</accession>
    <name>R6YPZ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01868</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000295">
        <property type="protein sequence ID" value="CDD30661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30661">
        <property type="protein sequence ID" value="CDD30661"/>
        <property type="gene ID" value="BN815_01868"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="8921" checksum="B75DC7916A81ED8E" modified="2013-07-24" version="1">MIVIDGPAALDGELKVQGAKNSTLPLLAATVLCKGQTVLHNCPHLSDVDTAVRILEHLGSRCQWQGXXXPASGRGTAWWWKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQB3</accession>
    <name>R6YQB3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30786">
        <property type="protein sequence ID" value="CDD30786"/>
        <property type="gene ID" value="BN815_01990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="321"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="336"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="38799" checksum="CFAE10DC41011257" modified="2013-07-24" version="1">MISAVELQQKDIPPARFVVVDFLPQGLSLLASPPKYGKSWFVLDLCLSVAAGTPFLGQDTVKSGCLYLALEDSQRRLQDRMNKVLGGRTAPQGFYFATSALDIGEGLLEQLEGHMAAHPDTGLIVIDTLQKVRGAGNSRENAYSADYREVGALKAFADKHGVCLLLVHHLRKMADDGDPFNRISGTNGIMGAADSVFVLSRKKRSDTQTTLSVTGRDIESREMVLEFDKGSYRWQVLGSVEQMEEQQARTEYESNYIPGTIRELVEQSGGRWSGTMQDLLDAAKRYHGVLLADNTKALSNEVKRFERSLLEYDGILHDRVRNGNGGGKHRFYKRQPTTTESQPQGEQLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQX5</accession>
    <name>R6YQX5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase iron-dependent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02120</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30961">
        <property type="protein sequence ID" value="CDD30961"/>
        <property type="gene ID" value="BN815_02120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990362">
        <property type="term" value="F:butanol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044731">
        <property type="entry name" value="BDH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43633">
        <property type="entry name" value="PTHR43633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="3">
        <location>
            <begin position="9"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="13934" checksum="D39801A5984B366D" modified="2013-07-24" version="1">MKDFTYSYPTHVYFGKGALANALKAELPAGAKKVLLAYGGGSTKKNGIYQEITGLLHDLGKEVVEFTGIMANPTYQKVQEGAKLAKENAVDYILAVGGGSVIDCCKIVAAQALTANNEADIQPWLQELGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRN4</accession>
    <name>R6YRN4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thiamine diphosphokinase</fullName>
            <ecNumber evidence="1">2.7.6.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02395</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.2" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31251">
        <property type="protein sequence ID" value="CDD31251"/>
        <property type="gene ID" value="BN815_02395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030975">
        <property type="term" value="F:thiamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004788">
        <property type="term" value="F:thiamine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006772">
        <property type="term" value="P:thiamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07995">
        <property type="entry name" value="TPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006282">
        <property type="entry name" value="Thi_PPkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007373">
        <property type="entry name" value="Thiamin_PyroPKinase_B1-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036371">
        <property type="entry name" value="TPK_B1-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007371">
        <property type="entry name" value="TPK_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036759">
        <property type="entry name" value="TPK_catalytic_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04265">
        <property type="entry name" value="TPK_B1_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04263">
        <property type="entry name" value="TPK_catalytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00983">
        <property type="entry name" value="TPK_B1_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63862">
        <property type="entry name" value="SSF63862"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63999">
        <property type="entry name" value="SSF63999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01378">
        <property type="entry name" value="thi_PPkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPK_B1_binding" evidence="6">
        <location>
            <begin position="141"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="22975" checksum="02B6B7A11EB4CCA1" modified="2013-07-24" version="1">MATKKQECMIIGASPIEDDAVFREFPPENYYVICADAGYETAERYGITPDLVVGDFDSAKTLPPKGNKVLTLPVEKDVTDTMYAVIKGFAKGYRSFVLVGCLGGARFDHSLANLEVLQYILQHSGYGVMADSHTKVFLIAGSRLRLTEMKGATVSVFPYGTASCTVTYQGLLYPLAHDTLTSGGVLMGVSNTITADTAVIRVHAGTALVVVYTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRS0</accession>
    <name>R6YRS0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dead-box helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00224</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31286">
        <property type="protein sequence ID" value="CDD31286"/>
        <property type="gene ID" value="BN815_00224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="32"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="242"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="747" mass="84676" checksum="9436D446DC2EFC40" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRU5</accession>
    <name>R6YRU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31306">
        <property type="protein sequence ID" value="CDD31306"/>
        <property type="gene ID" value="BN815_00244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17495" checksum="0A85F9F4B697A2D4" modified="2013-07-24" version="1">MNGKVCFFIGHRDTPEHVYPALEQAVEQLITQGVTEFYVGNHGSFDRMAARGVIAAKQRHLEVRLTMLLPYHPAEREVVLPAGFDGSLYPPGMENVPRRFAIPRANRWMVEHCTHLVAYVTHPASNAGKVVEWGRIQGKRVVELGESLAEEGLPIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS26</accession>
    <name>R6YS26_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="9">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">leuS</name>
        <name evidence="15" type="ORF">BN815_00307</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31376">
        <property type="protein sequence ID" value="CDD31376"/>
        <property type="gene ID" value="BN815_00307"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_B">
        <property type="entry name" value="Leu_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002302">
        <property type="entry name" value="Leu-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43740">
        <property type="entry name" value="PTHR43740"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00985">
        <property type="entry name" value="TRNASYNTHLEU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00396">
        <property type="entry name" value="leuS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1g" evidence="13">
        <location>
            <begin position="41"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1_2" evidence="14">
        <location>
            <begin position="221"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1" evidence="11">
        <location>
            <begin position="417"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="12">
        <location>
            <begin position="653"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="581"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="584"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF09334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF13603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD31376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="804" mass="91302" checksum="906906620AAD4172" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSK2</accession>
    <name>R6YSK2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ORF">BN815_00387</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31511">
        <property type="protein sequence ID" value="CDD31511"/>
        <property type="gene ID" value="BN815_00387"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00680">
        <property type="entry name" value="MAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="12"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="26575" checksum="18119D855851DAB1" modified="2013-07-24" version="1">MIVLKTSRELSLMRKAGKISQKALRLAGEAVEPGVSTWEIDKIVRQYIESQGATPSFLGYGGFPASACISVNNVVIHGIPSKSTLLKKGDIVGIDIGACYEGYHGDNAWTFACGEVSDEAQALLDATEKSLFLGIEQAVPGNRVGDIGHAVQAYVEARGYSVVRDFVGHGVGAKLHEDPSVPNYGTPGRGVRLMPGMVIAIEPMVNMGKPGVKILDDEWTTVTRDGSLSAHFEHTVAITTDGPVLLTALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT44</accession>
    <name>R6YT44_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31776">
        <property type="protein sequence ID" value="CDD31776"/>
        <property type="gene ID" value="BN815_00473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="189"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="39458" checksum="999D2D95FED2671D" modified="2013-07-24" version="1">MIYYQDKDLTVRAMYPSDCQAFHQGFAAQGWDKPFSQFERYFEEQREGVKKVLVAVLQGEVAGYTTLLPQAPAGPFAGMGWPEVCDFNVLEKFQRRGIGSRILAVAEDLASQTSGTICLGVGLHSGYGAAQRLYVKRGYVFDGSGLWYRDKPLEQYAPCAADDDLVLYLSKKLVRREFRPLTREEITPELFRCFDRFQIVEKCWRKVEGQWVVKDVVFTERWGEEDYRFLCQCLQNTVATGGQVWGAFLEGRLKGFASVEGPLIGSQKQYADLTSIHVSADARGHGLGRQLFQRAEETGRRLGAKALYISAHSSVESQAFYKAMGCVEATEYIPAHVEQEPCDCQLECPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z995</accession>
    <name>R6Z995_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Galactose-1-phosphate uridylyltransferase</fullName>
            <shortName evidence="10">Gal-1-P uridylyltransferase</shortName>
            <ecNumber evidence="10">2.7.7.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">UDP-glucose--hexose-1-phosphate uridylyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">galT</name>
        <name evidence="13" type="ORF">BN815_00495</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>alpha-D-galactose 1-phosphate + UDP-alpha-D-glucose = alpha-D-glucose 1-phosphate + UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:13989"/>
            <dbReference type="ChEBI" id="CHEBI:58336"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="2.7.7.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the galactose-1-phosphate uridylyltransferase type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.12" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27042">
        <property type="protein sequence ID" value="CDD27042"/>
        <property type="gene ID" value="BN815_00495"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008108">
        <property type="term" value="F:UDP-glucose:hexose-1-phosphate uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00571">
        <property type="entry name" value="GalP_UDP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000766">
        <property type="entry name" value="GalP_uridyl_Trfase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023425">
        <property type="entry name" value="GalP_uridyl_Trfase_II_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005850">
        <property type="entry name" value="GalP_Utransf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005849">
        <property type="entry name" value="GalP_Utransf_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39191">
        <property type="entry name" value="PTHR39191"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02744">
        <property type="entry name" value="GalP_UDP_tr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01087">
        <property type="entry name" value="GalP_UDP_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006005">
        <property type="entry name" value="GalT_BS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01239">
        <property type="entry name" value="galT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01163">
        <property type="entry name" value="GAL_P_UDP_TRANSF_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 10" id="KW-0299">Galactose metabolism</keyword>
    <keyword evidence="7 10 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GalP_UDP_transf" evidence="11">
        <location>
            <begin position="23"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="GalP_UDP_tr_C" evidence="12">
        <location>
            <begin position="252"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD27042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="502" mass="56939" checksum="BEB07DAE049B67D1" modified="2013-07-24" version="1">MEKTNTNVEISRLLEYGLQRGLIAPEDKAYAANRMLALLGLREFEPQPVEEELHTPVEPLERLCQFAAEAGLIEPDTRDGRDQFDTELMNCLMPRPSQVVGEFYSLYEKDKQAATDYYYQLARSSNYIRVDRIEKDRMWTAPTPYGDLVITINLSKPEKDPKAIAAAKNAPQSGYPKCALCRENEGYLGSANQAARGNHRLIPLELGGEPWFLQYSPYVYYNEHCIVLSHEHRPMKVSRQSISRLLEFVTFLPHYFVGSNADLPIVGGSILTHDHFQGGRYEFPMAKAPIREKVCFPGFEDVEAGIVHWPMSVIRLRGKEAQRLVDLADKILTAWREYSDESAEILAYTEGTPHNTITPIARRRGEDYELDLVLRNNRTTPEHPLGLFHPHAEYHHIKKENIGLIEVMGLAILPPRLLTETGLLEQALKDPAQAQEIMARPEMEKHQAWYEELKAAGAGEGDTQRAIQESIGVIFGKILGNAGVYKDTEEGREAFRRFCSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9E6</accession>
    <name>R6Z9E6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glycosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27107">
        <property type="protein sequence ID" value="CDD27107"/>
        <property type="gene ID" value="BN815_00502"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029465">
        <property type="entry name" value="ATPgrasp_TupA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14305">
        <property type="entry name" value="ATPgrasp_TupA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="33881" checksum="FCF05B2AF673F792" modified="2013-07-24" version="1">MNKKEVYGGLLSLITKVAGIDNAKKFDTLFRDHKKLNLKNPQTLSEKVSYIELHEQSPLAADCTDKYAVREYVANKGLSDILIPIYGGGYTHFEDIDLSKLPDNFAIKATHGCKMNYLVPDKSKFDSEKCKKEIQRWMSTTYGTYSMEPHYTVIPHRFYIEKYLEKADQLIDYKFHCLNGEPRFVLTCSDRKSNGDKAMQVTLDLFDMDWNPIPEIVSSGLEHPGEGKLPKPENLDEMVRIARILSEDFKFVRVDLYELEGKVYFGELTFTPAHCVFPYLSDKFDLEMGKLLQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9N3</accession>
    <name>R6Z9N3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative beta-galactosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27197">
        <property type="protein sequence ID" value="CDD27197"/>
        <property type="gene ID" value="BN815_00534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50022">
        <property type="entry name" value="FA58C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="F5/8 type C" evidence="1">
        <location>
            <begin position="65"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="21343" checksum="9764AA148E73DBC0" modified="2013-07-24" version="1">MSGEKGSLLDGMGAIELRALYPGETVIRAQAEGVPPVELQLLVTGDSPWDGRELVPLPAPPSVMGPPPRQALDEIGLYRPVFASGEEPQCPAKNVTDGQWETCWKPASPEAGQWVMVDLEGTKDVEGIHVVFRGMVQHAVEVALSHTREDFRTIYNSGERPAVTDVSLDNLGQQARFIRVRFPGEATPICKIEVFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAX1</accession>
    <name>R6ZAX1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Elongation factor P</fullName>
            <shortName evidence="8">EF-P</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">efp</name>
        <name evidence="12" type="ORF">BN815_00673</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Protein biosynthesis; polypeptide chain elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the elongation factor P family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27617">
        <property type="protein sequence ID" value="CDD27617"/>
        <property type="gene ID" value="BN815_00673"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00345"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04470">
        <property type="entry name" value="S1_EF-P_repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05794">
        <property type="entry name" value="S1_EF-P_repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00141">
        <property type="entry name" value="EF_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015365">
        <property type="entry name" value="Elong-fact-P_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020599">
        <property type="entry name" value="Transl_elong_fac_P/YeiP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013185">
        <property type="entry name" value="Transl_elong_KOW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001059">
        <property type="entry name" value="Transl_elong_P/YeiP_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013852">
        <property type="entry name" value="Transl_elong_P/YeiP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011768">
        <property type="entry name" value="Transl_elongation_fac_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30053">
        <property type="entry name" value="PTHR30053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01132">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08207">
        <property type="entry name" value="EFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09285">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005901">
        <property type="entry name" value="EF-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01185">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00841">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00038">
        <property type="entry name" value="efp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01275">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8 12" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EFP" evidence="11">
        <location>
            <begin position="67"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Elong-fact-P_C" evidence="10">
        <location>
            <begin position="129"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD27617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="20850" checksum="669A4C0B686035DE" modified="2013-07-24" version="1">MVTAGDFRNGVTFEMDGGVYSIIEFQHVKPGKGAAFVRTKIRNVITGAVTEKTFNPSDKYPTAYIERKDMQYLYSDGDLYYFMDNESYEQMPINGSVLGDNFKFVKENMDCKVLSYKGNVFGVEPPNFVELEVTKTEPGVRGDTATNTLKPATLETGAEIRVPLFINEGEMIRIDTRTGEYMERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBA8</accession>
    <name>R6ZBA8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00714</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000061">
        <property type="protein sequence ID" value="CDD27757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27757">
        <property type="protein sequence ID" value="CDD27757"/>
        <property type="gene ID" value="BN815_00714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="256"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="308"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="343"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="374"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="415" mass="43744" checksum="EA88856633DFABA0" modified="2013-07-24" version="1">MTAQRTYTAKQWRHTQYASYFGYITQAIVNNLAPLLFLIFQDVYGIPLEKITLLVTVNFCVQLLVDMVAARFVDKIGYRPCIVAAHLFAAAGLAGLGLLPRLLPDPFVGLLGAVFLYAIGGGLIEVLISPIVEACPTDNKASVMSLLHSFYCWGSVGVILLSTLFLQLFGKGSWTVLALLWALLPLANALWFTKVPIAHLTEEGEGLPLGKLLTNKLFWIFAALMFAAGACELSMSQWASAFAESGLGVSKTVGDLAGPCLFAVLMGCARVIYAKFGDRLNLLNTQMLSAGLCVVAYLLAALSPNPLLALLGCGLCGLSVGILWPGTISVASRSLPKGGTAMFALLALFGDLGCSGGPTLVGMVSGAFGGELKTGLLFAVVFPVFLIAAALACKRALRHRKAQCLGSQFTPGGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDI7</accession>
    <name>R6ZDI7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LUD_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28577">
        <property type="protein sequence ID" value="CDD28577"/>
        <property type="gene ID" value="BN815_00881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024185">
        <property type="entry name" value="FTHF_cligase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003741">
        <property type="entry name" value="LUD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009501">
        <property type="entry name" value="UCP020269"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02589">
        <property type="entry name" value="LUD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020269">
        <property type="entry name" value="DUF1121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LUD_dom" evidence="1">
        <location>
            <begin position="13"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02589"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="23362" checksum="E700B29A1FA1C6EC" modified="2013-07-24" version="1">MDKNLEAVRRAQVERTIKALAQNRIPAVYASTREEAVEAVRGMLSPGEVITCGGSMTLAECGIQDLLKSGAYEFLDRTVMDPQEVYRRTFSADVFLTSANAITEEGELYNVDGNGNRVAALIYGPQRVIVVAGVNKIVRNLQEAISRVKYVAAPANGVRLGTNTPCSHTGRCAQCEGGMTAGCASEKRMCCQYVVTGYQRTDRIRVVLVGEELGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZH26</accession>
    <name>R6ZH26_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6487 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01255</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29762">
        <property type="protein sequence ID" value="CDD29762"/>
        <property type="gene ID" value="BN815_01255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045504">
        <property type="entry name" value="DUF6487"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20097">
        <property type="entry name" value="DUF6487"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6487" evidence="1">
        <location>
            <begin position="3"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="8390" checksum="FBD1924008442963" modified="2013-07-24" version="1">MNCPVCGKEMEPGCVQTYQWAAWVKKPHALTLMLKDGEILLDKKYVRPCSFPGWICRDCKKIVLDYSGKPGQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHH0</accession>
    <name>R6ZHH0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HDc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01298</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29912">
        <property type="protein sequence ID" value="CDD29912"/>
        <property type="gene ID" value="BN815_01298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDc" evidence="1">
        <location>
            <begin position="38"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="21667" checksum="33BD0FB32266E049" modified="2013-07-24" version="1">MRKSTLERYWEEEEFKGFFHDLLAESGLERINEYVQHGSTTRLLHSLAVAYYSYRLARFTRLSFHWQELVRGALLHDYFLYDAQDGDPARKGHWTRHPHIAAENAKQEMDLTPIEEDTIRCHMFPLTIKPPKYREGVVVSLVDKACSVYEFFRRRRPYSKLRATVPVRRTVILLLPEIVGERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHQ9</accession>
    <name>R6ZHQ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01332</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000186">
        <property type="protein sequence ID" value="CDD29992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29992">
        <property type="protein sequence ID" value="CDD29992"/>
        <property type="gene ID" value="BN815_01332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="20487" checksum="70CB6A9BF5FC68BB" modified="2013-07-24" version="1">MGVCVRVGVVGVVALHVGQGRLEELLHPGVVLPGGEVRLQILVEHVLELCPVKVVLNAGARLGVVVLLANGQKQQQAVVALLGADAPDVEQGVGVVVDVLAVQEVHRHHHNLSACLLEQVLVLCDNLLLCLLREDVRLVQHILVLRPVGIGRQRRDSQAEGQRQGQQQAQGFFRQACFRGSLHGDAPFHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHU5</accession>
    <name>R6ZHU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30012">
        <property type="protein sequence ID" value="CDD30012"/>
        <property type="gene ID" value="BN815_01339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000150">
        <property type="entry name" value="Cof"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00099">
        <property type="entry name" value="Cof-subfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="28907" checksum="2639C6DFE701B62C" modified="2013-07-24" version="1">MIRAIFFDIDGTLLDSATGKVPPSTLACLRALQRKGVRLWVATGRFPAMTTFLRDIFPFDGVITLNGQLATDKDGQVLHRMAHEPENIRALVELVREDPEPFPCLIIEEEQCFSLRESPVIQEHFAWAGLPAPEAYHLSRLEEHPVLQFLAYITPQEYGRLAPLRHIEITGSGHSIADIIPLGGGKEVGIAAVAQRFGWKREEIMVFGDGPNDAKMLAWAGAGVAMGNGVEEAKAAADYVTTPVGEDGVKNALLHFGVLEETEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIK6</accession>
    <name>R6ZIK6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01521</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000216">
        <property type="protein sequence ID" value="CDD30287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30287">
        <property type="protein sequence ID" value="CDD30287"/>
        <property type="gene ID" value="BN815_01521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438974" evidence="1">
        <location>
            <begin position="23"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="17142" checksum="FF4DC5CB2BF2A730" modified="2013-07-24" version="1">MKRIKQITAALLCCLFIPCAIASDTNMNLQPGLFKKLLAQSPSESLQELESLGLVLPEAYEIAGREYAEIVLDEVLRGFVRNHYDYPNYSYTEAKKLGIRIVNLLCAHDPELNAARREYYASLGKEPPLYYEGEGELVKVIDGSVLHVKTYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJK5</accession>
    <name>R6ZJK5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Riboflavin kinase/FMN adenylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_01843</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + FMN + H(+) = diphosphate + FAD</text>
            <dbReference type="Rhea" id="RHEA:17237"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.7.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + riboflavin = ADP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14357"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RibF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30632">
        <property type="protein sequence ID" value="CDD30632"/>
        <property type="gene ID" value="BN815_01843"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00277">
        <property type="reaction ID" value="UER00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006747">
        <property type="term" value="P:FAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023468">
        <property type="entry name" value="Riboflavin_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22749">
        <property type="entry name" value="PTHR22749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00904">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="SSF82114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0274">FAD</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavokinase" evidence="11">
        <location>
            <begin position="74"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22754" checksum="2401FBEE2E37D6D9" modified="2013-07-24" version="1">MLFAACNARRLCCGEDFRFGKGAAGDVALLRSLCQEAGVELYVVPPVEDGGEKVSSTRIRKAVEEGDIPTANRLLGRPFGFSLEVIHGNHIGTGLGTPTINQAIPEGFVLPRFGVYASWCRVGGQFFYGVTNVGVKPTVGSDKVLAETWMPEFSGDLYGKRVRVFLLEFLRPERKFASLEELKAAITYNGRQAQAVAARTPPPAFLASRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKA7</accession>
    <name>R6ZKA7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AraC-family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02059</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30897">
        <property type="protein sequence ID" value="CDD30897"/>
        <property type="gene ID" value="BN815_02059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="183"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="32598" checksum="3E2050803A91BAC9" modified="2013-07-24" version="1">MLLREQYQEHSERDYLSVPLATYHFEQVTIPLHWHREVELILPQEAGELELEGQLHPYGPQELLCVNQGVLHRTWAPIPLADLLVVDLDSLLSPLLRQEGGSFLTRLAEGSLVFPLGVGRDTPAYGELAASFRACVGLVREKPPGWELPVQLELLKLLETYHSHGLLVERCPRASEPHTQAVKESIAYMRRNLDQELSLERLADQAALSPSHYIRVFRRYTGQTPFAFLSDLRLREAAHCLEQGMTVSETALHVGLGNLSYFIRLFRQRYGQTPKQYQLGLTSRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKD2</accession>
    <name>R6ZKD2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02079</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-mannitol 1-phosphate + NAD(+) = beta-D-fructose 6-phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19661"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:61381"/>
            <dbReference type="EC" id="1.1.1.17"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30917">
        <property type="protein sequence ID" value="CDD30917"/>
        <property type="gene ID" value="BN815_02079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013118">
        <property type="entry name" value="Mannitol_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013131">
        <property type="entry name" value="Mannitol_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01232">
        <property type="entry name" value="Mannitol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08125">
        <property type="entry name" value="Mannitol_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mannitol_dh" evidence="2">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="Mannitol_dh_C" evidence="3">
        <location>
            <begin position="186"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="456" mass="51875" checksum="8E08EA17ED439977" modified="2013-07-24" version="1">MKVLQFGQGNFLRTFADVYFETLNQEGLDYQVYVATAIPHENLEAFRRQGNRYHVVLRGSQGGQPVEQVLPVTCLQEVIDPFLEPEAFYALAEDPELKLIVSNTTEAGIQFHSQDSFEGFADITFPAKVTKFLYRRFQAGQPGIYLLPVELIDNNAGELARCVEEYITLWGLPQEFRQWNQRENFYCNTLVDRIVSGYPREEETRRHLENLVGQEDSLLAVGEPFGLWVIERKGDIAQYIPQGTHQIDVVLAEDISYYKRRKVRVLNGSHTNLVAAGLWEGCSTVYDCVGAPKLRAFVLDTLEREIVPFVSQDVAATREFAASVLDRFANPYLNHQLTSILLNSVSKWKARDLPSFQDYFQREGKIPRNLTKGLAYLVELYRRAQRQEDGFVAVLPGREIPLVDEERYLTYFLEGGTVESFLGDETIWGEDLTQYPGLLHTVAGHIATLEEGGSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL86</accession>
    <name>R6ZL86_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">ATP-dependent 6-phosphofructokinase</fullName>
            <shortName evidence="10">ATP-PFK</shortName>
            <shortName evidence="10">Phosphofructokinase</shortName>
            <ecNumber evidence="10">2.7.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Phosphohexokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">pfkA</name>
        <name evidence="12" type="ORF">BN815_02356</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + beta-D-fructose 6-phosphate = ADP + beta-D-fructose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer or homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.11" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31212">
        <property type="protein sequence ID" value="CDD31212"/>
        <property type="gene ID" value="BN815_02356"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003872">
        <property type="term" value="F:6-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047334">
        <property type="term" value="F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01976">
        <property type="entry name" value="Phosphofructokinase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022953">
        <property type="entry name" value="ATP_PFK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012003">
        <property type="entry name" value="ATP_PFK_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015912">
        <property type="entry name" value="Phosphofructokinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000023">
        <property type="entry name" value="Phosphofructokinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012829">
        <property type="entry name" value="Phosphofructokinase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035966">
        <property type="entry name" value="PKF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00365">
        <property type="entry name" value="PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000532">
        <property type="entry name" value="ATP_PFK_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00476">
        <property type="entry name" value="PHFRCTKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53784">
        <property type="entry name" value="SSF53784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00433">
        <property type="entry name" value="PHOSPHOFRUCTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="7 10 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PFK" evidence="11">
        <location>
            <begin position="3"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="135"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="179"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="282"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="75"/>
            <end position="76"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="112"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="276"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="site" description="Important for substrate specificity; cannot use PPi as phosphoryl donor" evidence="10">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="358" mass="38869" checksum="9C8627CE6505D58A" modified="2013-07-24" version="1">MKRVGILTSGGDCQGLNAAIRGVAKGLYQEFGKEVEIFGIKDGYKGLIFGEYKKMEERDFSGILTLGGTILGTSRQPFKTIRVIDENSVDKVKSMKENYKKMKLDCLVILGGNGTQKTANLLSQEGLNVIHLPKTIDNDIWGTDVTFGFHSAVEIATNVIDCIHTTATSHGRIFIVEVMGHKVGWLTLSAGIAGGADVILLPEIPYDIDKVAKCLNDRIKKGKKFSILAVAEGAISKEEAALTKKERKKARENFPHPSIVYRIAEELAKKIDNEIRVCVPGHFQRGGSPCAYDRVLCTRLGATAARFIKEKTFGVMVGMVGGQCVPVPLAEVAGKLKSVPVDCDEIKAARQIGISFGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLQ3</accession>
    <name>R6ZLQ3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">FtsX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00318</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31387">
        <property type="protein sequence ID" value="CDD31387"/>
        <property type="gene ID" value="BN815_00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="40"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="14620" checksum="653339B1CED87AD7" modified="2013-07-24" version="1">MISTPLSSLQRMMDAAVAGIAVTGAVLAALLLLLWTRGRKREVGIFLALGKGKGEILLQFFAENLLLALPAGAAALGLAALLGERAGDILAAANGVEGLDVAVRFQDAAAVYGLGALLLALAVLLAAATVLRCKPKDILSQME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM68</accession>
    <name>R6ZM68_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00396</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31522">
        <property type="protein sequence ID" value="CDD31522"/>
        <property type="gene ID" value="BN815_00396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="32559" checksum="AA03F232BC570EBA" modified="2013-07-24" version="1">MLVPCEKREWKLLEPYAWDMLGNLEAVSFPLYHDGVKTETSFLHRVEEAFTRPDEELLLYYHSGRAEGWAHTYWIPEESALGLVSMAVQGDFGQALEELLVYWKKRFPGYQWFSYFPADNRGAHSFLQRSGYTPQPPENVAVLLFDNYSARTEASRVVKIGQETFPLFCQIHSRFEGSMYWTSERMKSQLDKWSIFAYMEKGKCLGALYYNHQTQKDLEIFGLDLLEKEREIAGELLFSALNQAKAGGARSMYFFHEPVWTPMLESLGFKNLTTALGYSGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU87</accession>
    <name>R6XU87_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Aminotransferase</fullName>
            <ecNumber evidence="2">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00570</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27298">
        <property type="protein sequence ID" value="CDD27298"/>
        <property type="gene ID" value="BN815_00570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="3">
        <location>
            <begin position="32"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="389" mass="43762" checksum="0B5F0B55441B1233" modified="2013-07-24" version="1">MIEYDSLVNRTVRRIKPSGIRKFFDIANEMDDVISLSVGEPDFHTPWHIREAGIESLEKGRTSYTPNRGFLKLRAEISNFIERHYHVKYDPQDEVLVTVGGSEAIDLCVRTLVEPGDEVLIPEPSFVCYVPITEMAGGVPVIIETKPENGFRLTAQELEEKITDKTKLLILPYPNNPTGAVMRRADLEAIARVVERHNLLVLSDEIYAALTYGSEPHTAFSAIPGMQERTILVNGFSKSHSMTGWRMGYAAGPKEIISLMTKLHQFAIMSAPTMSQYAAIEAMKNGDDDIEYMRGQYDMRRRLIVDGLNNMGLKCFEPEGAFYVFPSVKSTGLTSMEFCERLIRSHRVAVVPGDAFGACGEGFVRISYCYSTKHIIEALERMEAFLKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXZ6</accession>
    <name>R6XXZ6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PF03932 family protein CutC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">cutC</name>
        <name evidence="3" type="ORF">BN815_00894</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CutC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Once thought to be involved in copper homeostasis, experiments in E.coli have shown this is not the case.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000097">
        <property type="protein sequence ID" value="CDD28608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28608">
        <property type="protein sequence ID" value="CDD28608"/>
        <property type="gene ID" value="BN815_00894"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00795">
        <property type="entry name" value="CutC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005627">
        <property type="entry name" value="Cu_homeostasis_CutC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036822">
        <property type="entry name" value="CutC_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12598">
        <property type="entry name" value="PTHR12598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03932">
        <property type="entry name" value="CutC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110395">
        <property type="entry name" value="SSF110395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="27180" checksum="3630774642D353B9" modified="2013-07-24" version="1">MAADFVLEACVDSLDSALAAKEGGATRLELCANLLIGGTTPMPSLVRRVKAATGLPTHALLRPRFGDFLYTGEEFSLLLEDAAALLEAGADAIVSGFLTPAGDLDRQRLAQLVELCHRAGKRFTLHRAFDMCRDPFAALELCKELGVDTVLTSGQKNTCLEGLPLLEELWPRRGGVELLLGAGISAAAIRRIRESLPHARAFHMSGKITVESPMSYRKGDVSMGLPGFDEYTLWRTDPENLRAARKELME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZH1</accession>
    <name>R6XZH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01071</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000126">
        <property type="protein sequence ID" value="CDD29153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29153">
        <property type="protein sequence ID" value="CDD29153"/>
        <property type="gene ID" value="BN815_01071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425136" evidence="1">
        <location>
            <begin position="30"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="311"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="371"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="435"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="494" mass="54518" checksum="775F7051131277EA" modified="2013-07-24" version="1">MKKTRGRLLSLVLAVLLCVAVLPTGSARAMGDAMSLDQVKALMNAETLYPQKTGYIELDRMLEELVAPYKGKDTYTTLKGLYDWTVNNIDYSWDGYSQNYAPAYDCFTLTYDLTYETGLPQAYPIDMIYRAYHMLTARTGVCYDWGILFAVMARYVGVESYVHTGILRIGTWTGHHGWTELRLGGKNYIFDGQQDWRSKGIYGRIVYDHFGISMDNAWRYQQETAANGPRDASMLPVDAPRVRVANVTVNTSRSGQVQGGGTQPWGEEVTLTSAGELPVVGWYTPGGTLLSQEPVYTFTLEGDTTVCALFEGDRFIDIPANAWYLEDVMQASEQGLVSGMSEAFFEPKGTMNRAMFATLLYKLEDAAGSEGEGYFEDVAPGAWYAGAVNWAYENGVVHGMSETEFAPLASVNREQAATMVVQYLESQGITSDAEEVDFADSGDISGYAVETIAKAQDLGILYGYEDNTIRPKNTLSRAEGVALLMNLVECLEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZU6</accession>
    <name>R6XZU6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Rubredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00515</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27140">
        <property type="protein sequence ID" value="CDD27140"/>
        <property type="gene ID" value="BN815_00515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="5">
        <location>
            <begin position="2"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin-like" evidence="5">
        <location>
            <begin position="172"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23260" checksum="0350D451991C17D2" modified="2013-07-24" version="1">MKFVCPVCGYVFDEAQEKAAFSSLPETWQCPICKAAKSLFTPQGGEAPAISGEPVQAEELRPLTPGELAAVFSNLARGCEKQYHPEEEACFQELAAYFAGLAPQEPDASVAQLLALFQEDLAQGYPVYQAAAQAAGDRGSQRVRVWGEKVTTMVRSLLEQYLRQGEDFLKNTQVWVCTVCGFVYVGDVPPDLCPVCKVPAWKFEKVEGRKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0H5</accession>
    <name>R6Y0H5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000157">
        <property type="protein sequence ID" value="CDD29498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29498">
        <property type="protein sequence ID" value="CDD29498"/>
        <property type="gene ID" value="BN815_00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9737" checksum="0EEFF18953CBD298" modified="2013-07-24" version="1">MSETTNRNVPSDAAWYCRHDPEEERFYEIFFKLCKKYNVRWASADEKEKQFLSEVARVTYERDKAKRLGLPLSKIRPSFTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y132</accession>
    <name>R6Y132_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Efflux ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01258</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29768">
        <property type="protein sequence ID" value="CDD29768"/>
        <property type="gene ID" value="BN815_01258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="643"/>
            <end position="664"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="694"/>
            <end position="722"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="742"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="815"/>
            <end position="835"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1047"/>
            <end position="1069"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1103"/>
            <end position="1124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="1144"/>
            <end position="1162"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="674"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="9">
        <location>
            <begin position="819"/>
            <end position="1008"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="261"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="381"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="494"/>
            <end position="620"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1179" mass="128957" checksum="96732F6072A7243F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1C7</accession>
    <name>R6Y1C7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TFIIB-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00674</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27620">
        <property type="protein sequence ID" value="CDD27620"/>
        <property type="gene ID" value="BN815_00674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013137">
        <property type="entry name" value="Znf_TFIIB"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51134">
        <property type="entry name" value="ZF_TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TFIIB-type" evidence="2">
        <location>
            <begin position="99"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="36"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="16633" checksum="17B922724E4B81A9" modified="2013-07-24" version="1">MTNSERASYIRGLMDGLELDPNAKETKVLNAIVELLDDLCLSVEELDNDLDELSEQVDEIDYDLGELEEDYYELEDEDECGCGCGHHHHHGDDFDDAEFEVTCPSCGDTIQLNDEMLEEGSIVCPGCGETLEFDFDDDEEEPEAPTEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1E5</accession>
    <name>R6Y1E5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Ferrous iron transport protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_01289</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 12">Probable transporter of a GTP-driven Fe(2+) uptake system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29893">
        <property type="protein sequence ID" value="CDD29893"/>
        <property type="gene ID" value="BN815_01289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015093">
        <property type="term" value="F:ferrous iron transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01879">
        <property type="entry name" value="FeoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003373">
        <property type="entry name" value="Fe2_transport_prot-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011640">
        <property type="entry name" value="Fe2_transport_prot_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041069">
        <property type="entry name" value="FeoB_Cyto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030389">
        <property type="entry name" value="G_FEOB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07664">
        <property type="entry name" value="FeoB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17910">
        <property type="entry name" value="FeoB_Cyto"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02421">
        <property type="entry name" value="FeoB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00437">
        <property type="entry name" value="feoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51711">
        <property type="entry name" value="G_FEOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8 12" id="KW-0408">Iron</keyword>
    <keyword evidence="12" id="KW-0410">Iron transport</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="290"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="317"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="350"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="394"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="461"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="523"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="561"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="595"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="623"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="654"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="domain" description="FeoB-type G" evidence="14">
        <location>
            <begin position="4"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU362098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD29893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="681" mass="75669" checksum="3191474816B74DAA" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y292</accession>
    <name>R6Y292_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000201">
        <property type="protein sequence ID" value="CDD30178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30178">
        <property type="protein sequence ID" value="CDD30178"/>
        <property type="gene ID" value="BN815_00111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="397" mass="40071" checksum="1E81BE53BF11C925" modified="2013-07-24" version="1">MGLLHHLLHALGKALQVALQVLQQLGPAQLLVGVQGELVPLLLGGLGPLAAALQAQLVALHGVLPGGHGLLGLPQQLLQLGGLLPGGGQALLGLAHAVLYRPGPQADFRRGGLGGGQGDALLRQGGVVLGQLLGGLLHLAGGLVGAPAQLLQALGKGKQLVTALLDLPLLLGGLLALLGDFSVHVLAGAGGLLHLALQALDALSGVGGVVFQQARLALGPDGLLVKGGGLGPGLLQLDGALVGLAVVLLGPLAQRADLLLQLPVLGLGQGDFLPVLPQHLAGTLQRLQPDADFQLLLLLVQGDELLRLFRLDAQGLHTALQFREDVPQAHQVFLGLAQAALGLLLAVAVAGDARGLLKNLPAVLGTGGHNAVYLALADDGIAVPSQARVHKELVDVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y388</accession>
    <name>R6Y388_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000249">
        <property type="protein sequence ID" value="CDD30463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30463">
        <property type="protein sequence ID" value="CDD30463"/>
        <property type="gene ID" value="BN815_01680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="29422" checksum="908AE39C3DF38439" modified="2013-07-24" version="1">MAGVAGRQVVGHGVAPLVFPAQGGDILVVNVHHHAHVVPGLDVLVDIPGDKLRGEVPRAPAHAVDRGVQNQLPLGLDAQQHLGVGKGQLQVVVAVKTQADGGVHVLVNQVELPGDLAGVHAAQGVHHVKGEGPQAVDPLHQAQQLHVRIEGGAHRLEKHLVALVQNGGGPAEGPLRVLPAEGQPHPGDAPRPARGQLLGGELLLPHGYHGHEHGAGLPLGQQGQDGLRPAVEGAVLVPGAAGEEAALHNLNAAGLQLIQNRGDGVAAKLPVVHIAPVPQSAVQDLHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y496</accession>
    <name>R6Y496_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4830 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00916</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28680">
        <property type="protein sequence ID" value="CDD28680"/>
        <property type="gene ID" value="BN815_00916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032257">
        <property type="entry name" value="DUF4830"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16112">
        <property type="entry name" value="DUF4830"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4830" evidence="3">
        <location>
            <begin position="52"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="163"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="163"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="22502" checksum="6FF30AA1774DD579" modified="2013-07-24" version="1">MVVSLKANRKRILAFILLAAIVAGACFFLTGRGEEEARQPIPGGTNEERVAFLESFGWQVQAEPTETREVMIPAQFNDVYTAYNVMQQAQGFDLEPYAGQICTQYVYKVENHPGDDQVYATLLVYGDEIIGGDIASTAVDGFMHGFASDSAHFGESGIATATPAATASPQATVAPESSAAESAVGSAPESAAAETAQGTEAAGEPLPEDAYPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4F5</accession>
    <name>R6Y4F5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative stage V sporulation protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00940</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28745">
        <property type="protein sequence ID" value="CDD28745"/>
        <property type="gene ID" value="BN815_00940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029303">
        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002797">
        <property type="entry name" value="Polysacc_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01943">
        <property type="entry name" value="Polysacc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14667">
        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="281"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="319"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="440"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="474"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="354"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="516" mass="55652" checksum="CF1148474D348C31" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4X2</accession>
    <name>R6Y4X2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sodium ion-translocating decarboxylase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02132</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30973">
        <property type="protein sequence ID" value="CDD30973"/>
        <property type="gene ID" value="BN815_02132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018801">
        <property type="term" value="F:glutaconyl-CoA decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005661">
        <property type="entry name" value="OadB_MmdB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35806">
        <property type="entry name" value="PTHR35806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03977">
        <property type="entry name" value="OAD_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015658">
        <property type="entry name" value="MmdB_OadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01109">
        <property type="entry name" value="Na_pump_decarbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0915">Sodium</keyword>
    <keyword evidence="7" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="154"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="254"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="301"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="330"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="401"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR015658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="420" mass="43907" checksum="1A4038D2B2C41C75" modified="2013-07-24" version="1">MDAIVNFLQQTGFYIVQQNPLSLVMLVVSCVLLYLAIVKQFEPLLLLPIAFGMLLTNLPGAGMYHEVLFANGHVQWELFGGATVTQEIIDEIAAGGATQTILDELTSLLGSTISVGLLDVLYLGVKLGVYPCLIFVGVGAMTDFGPLIANPKSLLLGAAAQLGIFVTYIGATLLGFTGPEASSIGIIGGADGPTAIYTTSHLAPHLLGPIAVAAYSYMALVPVIQPPIMKALTTDKERKIKMKQLRPVSKTEKILFPIIVTIFVSFLVPSAASLVGCLMLGNLMRECGVVERLSKTVQNELMNIVTIFLGVSVGATATAATFLSWQTLGILLLGIVAFGFGTAGGVLLAKLMNIFSKEKVNPLIGSAGVSAVPMAARVSQVVAQKYDPSNFLLMHAMGPNVSGVIGSAVAAGVLLALFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y552</accession>
    <name>R6Y552_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02202</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31048">
        <property type="protein sequence ID" value="CDD31048"/>
        <property type="gene ID" value="BN815_02202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="61"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="268" mass="29099" checksum="FA635743FE7E9385" modified="2013-07-24" version="1">MKNRTKLPNVYLGFLLALMYVPILLVIIYSFNESKLSSVWGGFSLKWYAELFRDRDLFQALWNSIVLGVISSCSAAVIGTLGAYGMSKVNFPLKGVVEYVSTLPMMIPEIIMGMVSMVFFSLIGIPFGMGTLVIAHTAFCIPYVFMLVKARLVGMDKSLPEAAQDLGASPVRVFFDVTLPLVAPAIASGMLLAFAMSMDDVIISVFVTGVDTNTLPVKIYSQLKTGVTPEINALCTLLFLATLLLCGLAALVGRTPKKQDSGKDVTER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5C9</accession>
    <name>R6Y5C9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TrpR family protein YerC/YecD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31148">
        <property type="protein sequence ID" value="CDD31148"/>
        <property type="gene ID" value="BN815_02292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000831">
        <property type="entry name" value="Trp_repress"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038116">
        <property type="entry name" value="TrpR-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013368">
        <property type="entry name" value="YecD_YerC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40080">
        <property type="entry name" value="PTHR40080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01371">
        <property type="entry name" value="Trp_repressor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF012508">
        <property type="entry name" value="YerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02531">
        <property type="entry name" value="yecD_yerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="100" mass="11327" checksum="4D7EC9E1924FFE3E" modified="2013-07-24" version="1">MNGKIHDKNTDFLFQAILALETPEECYRFFDDLCTVPELKAMSQRLAVAHMLSQKQVYSDIVAETGASTATISRVNRSLNYGSDGYELVFSRLDKKESQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5D8</accession>
    <name>R6Y5D8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31158">
        <property type="protein sequence ID" value="CDD31158"/>
        <property type="gene ID" value="BN815_02302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006938">
        <property type="entry name" value="DUF624"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04854">
        <property type="entry name" value="DUF624"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="85"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="206"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="238"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="280"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="39703" checksum="CA2B84DBD8847844" modified="2013-07-24" version="1">MAFLGIFGNYNKPGPGVNKDDPPKAAPVRFFEILLRKFGPMVQLNLIFLIPFAVILALMVLIYLAPTHFMLQLPVGDSYIQLDAWAMYAMPFPLVLLSPFTAGLTFVTRNYAREEHAFVWSDFWENVKGNWKYFLLNGFIVYVVYVVLSFSAIYYYNGTTRSWFFYIPFWLCLVLALFFLFAQYYLPVMFVTFDLKFRQAYRNAFILAMAGVGRNFLITLILGGLLYLLYVIPLNGLVVFLLIALLIFLLFSLVSFFINFTVYPVVDKYLIKPYEQRLQEEKNGPAPEKEEVEEEDPETARFFAPPEADEDEDDDDKMVYVNGRLIKKSELKERNFQEHQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6A6</accession>
    <name>R6Y6A6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transporter major facilitator family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01149</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29420">
        <property type="protein sequence ID" value="CDD29420"/>
        <property type="gene ID" value="BN815_01149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="223"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="257"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="286"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="315"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="352"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="381"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="410" mass="43201" checksum="EF713BB819A4C5CC" modified="2013-07-24" version="1">MKQLFTRNFTLLLLGQASSLLGNYTLRFALSMFVLEETGSAATFAGILAVSMVPTILLSPLGGVLADRANRRNIMVALDTLSGLAVLGAMALFPLGDRVFLTGALLVILSVLGAFESPTVQACVPQMVEESQLLRGNALVNQVSSLASLVTPFLGSLLYTAVGLSPIFLGTAVCFFLTAALECFLRLGEQPARPKESLGAILKGDLAQGARFLLREEPGIVKLLLLAALASFFAAGTAVVGFPYLVRTVLGLSAELYGAAESALGVAAILGGVCVAALGERLRLRSLAWVLGGIGLCLLPCGSAFLVPASALARYAVLLGMFFLLQLGCSLFSTCAISLIQARTPERLMGKVMSCVFTLSLCAQPLGQVVYGFLFDQFSQAVYWVLLPSGLALWAVGMGARHFFKSLEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6L2</accession>
    <name>R6Y6L2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta</fullName>
            <shortName evidence="1">ACCase subunit beta</shortName>
            <shortName evidence="1">Acetyl-CoA carboxylase carboxyltransferase subunit beta</shortName>
            <ecNumber evidence="1">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">accD</name>
        <name evidence="4" type="ORF">BN815_00411</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the AccD/PCCB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000430">
        <property type="protein sequence ID" value="CDD31588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31588">
        <property type="protein sequence ID" value="CDD31588"/>
        <property type="gene ID" value="BN815_00411"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01395">
        <property type="entry name" value="AcetylCoA_CT_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00515">
        <property type="entry name" value="accD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="3">
        <location>
            <begin position="28"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="285" mass="31144" checksum="7FD8C11B348BB780" modified="2013-07-24" version="1">MNLMGLFRSPQNELEKGGKPVPEEDAGIRTTCPHCGVQLPLNDLQDNLQVCTACGYHFRMGPRDRIVYLVDEESFQELDGDLKSRDILGFPGYDQKLRNAKLAAREKEGVVCGTAQIDGQPCALFFMDPNFMIGSMGTVVGEKITRLFEHATEHSLPVVGFTVSGGARMQEGILSLMQMAKTSAAVRRHSDTGNFYLTVLTDPTTGGVTASFAMDGDVIMAEPGATIGFAGARVIEQTIRKKLPAGFQKAEFLLEHGFVDIIVPRTQQRETIAKLLKLHRKGAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6N0</accession>
    <name>R6Y6N0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA topology modulation protein FLAR-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29510">
        <property type="protein sequence ID" value="CDD29510"/>
        <property type="gene ID" value="BN815_01180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="19977" checksum="3BCDD8076EDA6AC0" modified="2013-07-24" version="1">MKIYIVGSVASGKSTLARKISHITGAPCYHLDEAVYTVDPSEPWGNKKRPLEERDRLFQAMLAQRHYIMEDAGRDCFRAGMEQADTVLLLEIPRIVREKRILLRWVKQNLGLEKCIYRPRFAMLQAMFRWARNYDTGADGTKALVSQFASKTIVLRNGKDIRRYLETLSRVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6S6</accession>
    <name>R6Y6S6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00016</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000440">
        <property type="protein sequence ID" value="CDD31668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31668">
        <property type="protein sequence ID" value="CDD31668"/>
        <property type="gene ID" value="BN815_00016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="22017" checksum="989466D664336237" modified="2013-07-24" version="1">MENFIITIGRQAGSGGREIGMRLAQRLGIPYYGRQELMEIAKGTPDYEEVQSFYEEQPVDDLLYAIATSNVEEDLGHIPFRRIRQLCSKTSCVLIGRCGGHIFRGEKRAVSIFLHADENIRAQRTMQDYGLSLKKAMERNQQTDSDRAAFHRYYTREEWGASADYDLCLDSGILGVEGTVEVILAYLKIRGIVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6V6</accession>
    <name>R6Y6V6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cell division protein FtsZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ftsZ</name>
        <name evidence="8" type="ORF">BN815_00487</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Assembles at midcell at the inner surface of the cytoplasmic membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the FtsZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27014">
        <property type="protein sequence ID" value="CDD27014"/>
        <property type="gene ID" value="BN815_00487"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051258">
        <property type="term" value="P:protein polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02201">
        <property type="entry name" value="FtsZ_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00909">
        <property type="entry name" value="FtsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000158">
        <property type="entry name" value="Cell_div_FtsZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020805">
        <property type="entry name" value="Cell_div_FtsZ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045061">
        <property type="entry name" value="FtsZ/CetZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024757">
        <property type="entry name" value="FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314">
        <property type="entry name" value="PTHR30314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12327">
        <property type="entry name" value="FtsZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00423">
        <property type="entry name" value="CELLDVISFTSZ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="SSF52490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="SSF55307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00065">
        <property type="entry name" value="ftsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01134">
        <property type="entry name" value="FTSZ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0717">Septation</keyword>
    <feature type="domain" description="Tubulin" evidence="6">
        <location>
            <begin position="15"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Tubulin_C" evidence="7">
        <location>
            <begin position="209"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="337"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="23"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="110"/>
            <end position="112"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="382" mass="40652" checksum="A180E00014AD4A90" modified="2013-07-24" version="1">MPFEVDNLLNETPQTIKVVGVGGGGGNAVNRIASAGVRSVELICMNTDKQALQRSQASVKIQIGEKITQGRGAGSKPEIGEKAAEESREAIANVLKDADMVFITAGMGGGTGTGAAPRVAQIAREQGALTVGIVTKPFAFEGKRRMEQAEKGIAALREQVDSLVVIPNERLKLVSEERITLANAFIVADDVLRQGVQSISDLIQLPGIVNLDFEDVKSVMQNAGYAHMGVGRASGKDKAEQAAMAAISSPLLETKIAGARGVIINITSSPDIALDEIDTASQIVTERAHEDANIIWGATFDESMEDEMSVTVIATGFQGSEGDKKDPLDVDMDLDDEDYLESAPVTPAAPTRSSRRTEPRVDPAVIDDDDTFTDIMSIFNRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7A0</accession>
    <name>R6Y7A0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcriptional repressor NrdR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nrdR</name>
        <name evidence="10" type="ORF">BN815_00531</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NrdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27179">
        <property type="protein sequence ID" value="CDD27179"/>
        <property type="gene ID" value="BN815_00531"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00440">
        <property type="entry name" value="NrdR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003796">
        <property type="entry name" value="RNR_NrdR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30455">
        <property type="entry name" value="PTHR30455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00244">
        <property type="entry name" value="TIGR00244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ATP-cone" evidence="9">
        <location>
            <begin position="49"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="zinc finger region" evidence="7">
        <location>
            <begin position="3"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="18180" checksum="4A2CF6423BD5592E" modified="2013-07-24" version="1">MKCPYCGYIESRVIDSRPTDEGERIRRRRECLKCGKRFTTYEVIENVPIVVIKKDKSRETFDRNKLLNGLLRACEKRPVSMDTLERIVDEIENLLQNSLDREVSSQRIGTYAMEKLKNVDEVAYVRFASVYRQFKDINSFMEELSKIINSKKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7E5</accession>
    <name>R6Y7E5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000026">
        <property type="protein sequence ID" value="CDD27224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27224">
        <property type="protein sequence ID" value="CDD27224"/>
        <property type="gene ID" value="BN815_00546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010064">
        <property type="entry name" value="HK97-gp10_tail"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04883">
        <property type="entry name" value="HK97-gp10_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="7"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="13891" checksum="32E2C177C6F8757A" modified="2013-07-24" version="1">MGRKISISQLSAAVMEQLNEYAELATEDMKEAVKKAGTAVRKDIEASAPRNTGDYAKSWAVKTTKESSNALQVTVHSRNRYQLAHLLEYGHAKRGGGRVAARPHIAAAEEAGIEQLEREIERSLTNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7K1</accession>
    <name>R6Y7K1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peroxisomal (S)-2-hydroxy-acid oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01290</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29895">
        <property type="protein sequence ID" value="CDD29895"/>
        <property type="gene ID" value="BN815_01290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="32363" checksum="7F9D92A732744DEB" modified="2013-07-24" version="1">METRRKPEDSNAMTERYFERILVETRYIDAVVPDTSVELFGRKFSTPVMTAALSHIPGKDGDGMVQMAQGAAKAGALTWVGMTSLEQYGEIAKTGAPLVRIIKPYADEREIISRMEQAEELGAVAIGMDIDHSFNGQGQPDNVLGNAMRPKTLAEIASYCKRTKLPFLIKGVLSAQDAQKCLDAGAGGVLVSHHHGIMASAVPALLVLPEIVKTLRGKIPVFVDGSFENGMDVFKALALGADAVCVGRALMPPIQQQGAAGCQRTLEDITAELAAAMARTGSRDVRHIDSSLLWIDGKHLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7M5</accession>
    <name>R6Y7M5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00571</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27299">
        <property type="protein sequence ID" value="CDD27299"/>
        <property type="gene ID" value="BN815_00571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="315"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="345"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="378" mass="41263" checksum="467DF46C41EE8080" modified="2013-07-24" version="1">MGGEKVWLSRCGGYASEELLRQMEEAFTALGVWEEIRPGMKVVLKPNLVMSSKPEAAIATHPALVAAVGKCVQKAGGEVLIAESPGGPYTPAAMKAIFRGCGYTDMAKDCGFALYTECKSREVTLPRAQRCRQLSVAEPFLTRDYLIDLCKLKTHGMVGFSGAVKNLFGAVPGLQKPELHCRFPEKQPFSEMLVDLCDFLQPDLCIMDGILAMEGNGPTGGQPRKMGVLGASKSPYALDVCGASLIGMKPESVLMLKEANRRGLGPLSPEECQLVKEPVAPLAQPDFVKAKASSTDFIDRLPSFLRPAAKKIATPTPKIRKKECVGCGRCAESCPQHTIQIREGKAVIDYKNCIRCFCCHEMCPKHVIDIRRWSVLHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7U2</accession>
    <name>R6Y7U2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000185">
        <property type="protein sequence ID" value="CDD29980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29980">
        <property type="protein sequence ID" value="CDD29980"/>
        <property type="gene ID" value="BN815_01328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="130"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="181"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="151"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="21081" checksum="FD393C23229A6BBB" modified="2013-07-24" version="1">MAEELIALASQFSQRMGGGVPVAVCAEPMGPGEEGFSGAKLLRLRCTYADGGEATCIAKHTTWQERAAMQTFTGQGRGFTPAAWDTQETSREDAWLLLEDVSLSQPLPPDTLAWKAQVAQALAALHGDNLSRPGSPALLPPPKRAIGSGSPQPFPWTTSSASASRTGRSPAATAAFCLSCTSGGSALSGRCWPSARRKPPSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Z7</accession>
    <name>R6Y7Z7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flavoprotein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01353</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000189">
        <property type="protein sequence ID" value="CDD30030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30030">
        <property type="protein sequence ID" value="CDD30030"/>
        <property type="gene ID" value="BN815_01353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="418" mass="44055" checksum="84DF6C9CFE1BCB7C" modified="2013-07-24" version="1">MERWEIAIIGAGAAGLMAAQAAAKAQRAQGRPVSVVVLEGNPKPGKKLLATGNGRCNLTNLDAGPAHYHGDVALAAPLLEACPPSRVLEEFQAMGLLCRADGEGRVYPRNLQAAAVLQILRQACQELGVTLACDWGVASLAREAGGFRLESAQGERLWCARCVLACGGKASPKHSWEGGGYALAQALGHRVTELRPALTALKSPKKCLRSLKGMRVRAKASLLAAGKPLYQESGEVLFGEGSLSGICVFNLSAHLPENGTGVEVSLDLLEDLPYRDALAYVESQAKAHPSRQAWELFAGALNLRVGEELLKELSVPKEACFQDLSRQQLRKAASLAKDWRFPVTGTGGWEGAQVTAGGVPLGEVDTATLESKKCPGLYLAGELLHLHGDCGGYNLHWAWATGLAAGQSAGGRKGKGIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8U4</accession>
    <name>R6Y8U4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000058">
        <property type="protein sequence ID" value="CDD27709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27709">
        <property type="protein sequence ID" value="CDD27709"/>
        <property type="gene ID" value="BN815_00702"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="27519" checksum="86706F3636C321D5" modified="2013-07-24" version="1">MKISGYKGLFFPTLISYIVLCFLLAGSQWEGKTVFEFYCGIFGGIRAGILSDNLMKLMQWLLSFLPLLVFLGMQISEELSGRLYITVIRLKSIRRWWNSWVRFSLLLAGSFSLAVFLAAFLTGVILGEGAGLGSEVGMLFQVFCVNAIYNCTLSVVLVSLGLWLRNLKWSMVVILAIVMTSYVLGKFFPAITPFLVGTYSMANRLRICDNCYGVDGWIAVTILLLLAGIAYFVGIIGAKKVLYRMND</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Y3</accession>
    <name>R6Y8Y3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 9">GTPase Der</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GTP-binding protein EngA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">der</name>
        <name evidence="11" type="ORF">BN815_01601</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">GTPase that plays an essential role in the late steps of ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30380">
        <property type="protein sequence ID" value="CDD30380"/>
        <property type="gene ID" value="BN815_01601"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00195">
        <property type="entry name" value="GTPase_Der"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031166">
        <property type="entry name" value="G_ENGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016484">
        <property type="entry name" value="GTP-bd_EngA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032859">
        <property type="entry name" value="KH_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14714">
        <property type="entry name" value="KH_dom-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006485">
        <property type="entry name" value="GTP-binding_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03594">
        <property type="entry name" value="GTPase_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51712">
        <property type="entry name" value="G_ENGA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5 7 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 7" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="4"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G" evidence="10">
        <location>
            <begin position="178"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="10"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="57"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="120"/>
            <end position="123"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="184"/>
            <end position="191"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="231"/>
            <end position="235"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="296"/>
            <end position="299"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="441" mass="48490" checksum="DEE8BCEB81CEB15E" modified="2013-07-24" version="1">MAKPIVAIVGRPNVGKSTLFNKIVGQRLSIVEDTPGVTRDRIFGDAEWCGRKFSLVDTGGIEPASKDVILTQMREQAQIAIDSASAIIFVTDIRTGVTATDADVANILLKSGVPVVLCVNKCDTVGEPPAEFYEFYNLGLGDPVMVSSVHGHGTGDLLDRVCDVLPEDVEDDDEGDIIKVAVIGKPNVGKSSLVNKVAGENRCIVSDIAGTTRDAVDTTIQNQHGTFTFIDTAGLRRKSKVEDAIEHYSNLRAEMAVERADVCLILIDAQVGFTEQDSKVAGLAHEAGKGCVICVNKWDAVEKDDKTMQEMRKKLENDFSFMSYAPILFISAKTGQRLDRMFELIQIAAASNAMRVTTGTLNDILAQATARVQPPTDKGKRLKIYYMTQASTKPPTFVCFCNDHELFHYSYQRYLENRIRENFGLEGTPVRMVIRERGEKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y933</accession>
    <name>R6Y933_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Mannonate dehydratase</fullName>
            <ecNumber evidence="5 6">4.2.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">D-mannonate hydro-lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">uxuA</name>
        <name evidence="7" type="ORF">BN815_01646</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the dehydration of D-mannonate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>D-mannonate = 2-dehydro-3-deoxy-D-gluconate + H2O</text>
            <dbReference type="Rhea" id="RHEA:20097"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17767"/>
            <dbReference type="ChEBI" id="CHEBI:57990"/>
            <dbReference type="EC" id="4.2.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Carbohydrate metabolism; pentose and glucuronate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the mannonate dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.8" evidence="5 6"/>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30425">
        <property type="protein sequence ID" value="CDD30425"/>
        <property type="gene ID" value="BN815_01646"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00246"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008927">
        <property type="term" value="F:mannonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006064">
        <property type="term" value="P:glucuronate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00106">
        <property type="entry name" value="UxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004628">
        <property type="entry name" value="Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30387">
        <property type="entry name" value="PTHR30387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03786">
        <property type="entry name" value="UxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016049">
        <property type="entry name" value="Man_dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00695">
        <property type="entry name" value="uxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="356" mass="39899" checksum="3463104F3DA79A76" modified="2013-07-24" version="1">MKMGLRWFGEGYDTVSLDKIRQVPGVRGVITTLYGAMPGENWDKDQVLALQRSVEDAGLEVLGIESVNVHDAIKAGLPGRDQYIENYIQTIRTLGECGIHLICYNFMPVFDWTRTQLAKPRRDGSTVLAYDQREIDKMDPEKLFASMEAGSQGHLLPGWEPERLAHIQELFQVYKSVDEEALWANLKYFLDAILPTCEKYEVKMAIHPDDPGWSVFGLPRIITSGEALRRMVDMSPSPCNGVTLCTGSLGTNPHADLPGIIHMLEGSIFFAHVRNMEHTAPGQFEESAHLSSDGSFDMFAIVKALYETGFDGVIRPDHGRMIWGEQAMPGYGLYDRALGSQYLLGLWEALEKTINR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9J1</accession>
    <name>R6Y9J1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30555">
        <property type="protein sequence ID" value="CDD30555"/>
        <property type="gene ID" value="BN815_01768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="29"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="17609" checksum="E754A76F205DF0A5" modified="2013-07-24" version="1">MECKPWEMDEGMSLIMMRMRRSLRTVLREAVLEEGLTPNEIEVLLFLEHGTYNTARDISRLRGMPRSLVSKAVDQLVRRGYVESSQDKQDRRVSRLQLLPASQSAVQRLAQARGDFLSKLWGDPRGICRLFLHGWENGGQPGGYAPGGRAAAGKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9M2</accession>
    <name>R6Y9M2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoribosyl pyrophosphate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01806</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the ribose-phosphate pyrophosphokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30595">
        <property type="protein sequence ID" value="CDD30595"/>
        <property type="gene ID" value="BN815_01806"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004749">
        <property type="term" value="F:ribose phosphate diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009165">
        <property type="term" value="P:nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005946">
        <property type="entry name" value="Rib-P_diPkinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10210">
        <property type="entry name" value="PTHR10210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01251">
        <property type="entry name" value="ribP_PPkin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="1 3" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="4">
        <location>
            <begin position="48"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="27295" checksum="240420FB7AE4AC37" modified="2013-07-24" version="1">MGVDNVVTFDAHDPRVQNAVPLMSFDNLMPYYQVLKTMFRAFPDISTQREDFMIVSPDEGALNRNMYYASALGVELGMFYKRRDYSRVVDGRNPIVAHEYLGSDVAGKDVFVSDDIISSGESMLDIAYNLKERKAKRIFTYATYAIFTNGLESFDKAYREGVIDGVFGSNLTYRTEELKNRPWFYEVDVSKYIAYFISALNHDMSVSAMIDPHEKINALLERRRRERSLQQGTQLTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9V4</accession>
    <name>R6Y9V4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 14">Indolepyruvate oxidoreductase subunit IorA</fullName>
            <shortName evidence="14">IOR</shortName>
            <ecNumber evidence="3 14">1.2.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 14">Indolepyruvate ferredoxin oxidoreductase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">BN815_01895</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 14">Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="13 14">
            <text>CoA + indole-3-pyruvate + 2 oxidized [2Fe-2S]-[ferredoxin] = (indol-3-yl)acetyl-CoA + CO2 + H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:12645"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17640"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57271"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="EC" id="1.2.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14 15">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="14 15">Binds 2 [4Fe-4S] clusters. In this family the first cluster has a non-standard and varying [4Fe-4S] binding motif CX(2)CX(2)CX(4-5)CP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Heterodimer of the IorA and IorB subunits.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.7.8" evidence="3 14"/>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30690">
        <property type="protein sequence ID" value="CDD30690"/>
        <property type="gene ID" value="BN815_01895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043805">
        <property type="term" value="F:indolepyruvate ferredoxin oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045025">
        <property type="entry name" value="HACL1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017721">
        <property type="entry name" value="IorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43710">
        <property type="entry name" value="PTHR43710"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006439">
        <property type="entry name" value="Indolepyruvate_ferr_oxidored"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03336">
        <property type="entry name" value="IOR_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 14 15" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 14" id="KW-0249">Electron transport</keyword>
    <keyword evidence="10 14 15" id="KW-0408">Iron</keyword>
    <keyword evidence="11 14 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 14 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="17" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 14" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="16">
        <location>
            <begin position="521"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="16">
        <location>
            <begin position="549"/>
            <end position="574"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00033657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRNR" id="PIRNR006439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR006439-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="574" mass="61834" checksum="4D6349FC7DF3925F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAD9</accession>
    <name>R6YAD9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02052</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the sigma-70 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000336">
        <property type="protein sequence ID" value="CDD30890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30890">
        <property type="protein sequence ID" value="CDD30890"/>
        <property type="gene ID" value="BN815_02052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2" id="KW-0749">Sporulation</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="8">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="26891" checksum="A0B838AA8D191D74" modified="2013-07-24" version="1">MFPSIGQFLARLFHKLFPPETQGCHYINGPETLPPPLTKEEEAQVLENIRQGVPGAREPLITHNLRLVVYIAKKFESPGASVEDLISIGTIGLIKAVNTFQVERNIKLATYASRCIENEILMHLRKSSQLRHEVSIDDPLNVDWDGNELLLSDLLGSDPDTVNRDIEQEAERAMLRRAVDRLSPREKKIMVLRFGLGASKEHTQKEVADQLGISQSYISRLEKRIIHRLRRDLEKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAM3</accession>
    <name>R6YAM3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02124</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30965">
        <property type="protein sequence ID" value="CDD30965"/>
        <property type="gene ID" value="BN815_02124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="248"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="63"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="331"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="364"/>
            <end position="371"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="577" mass="63644" checksum="CF4F6864466984C7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN9</accession>
    <name>R6YAN9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNHCP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30985">
        <property type="protein sequence ID" value="CDD30985"/>
        <property type="gene ID" value="BN815_02144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024439">
        <property type="entry name" value="RNHCP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12647">
        <property type="entry name" value="RNHCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNHCP" evidence="1">
        <location>
            <begin position="22"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16667" checksum="D81BDFB3F2D04413" modified="2013-07-24" version="1">MNRENKRKKFEKGYYKDHPCQESFTCKSCGRLVTPGGAGSGHRNHCPNCLSSLHVDIEPGDRASDCGGLMEPVAVWVRKSGEWAIIHRCRRCGALSSNRVAADDNPMKLMSIAMKPLGSPPFPLEYLQEMTDRMGGQGDLSLWEAKGGKGDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB17</accession>
    <name>R6YB17_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02233</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31080">
        <property type="protein sequence ID" value="CDD31080"/>
        <property type="gene ID" value="BN815_02233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425253" evidence="2">
        <location>
            <begin position="28"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="279" mass="30408" checksum="200E123205C35DD1" modified="2013-07-24" version="1">MRNGMKRAALGLAAAALCLGLMGCSLSSGFADYDVSGYFQALLDSSYKNQNENYATVAATTEENAQQNNTTTVRNAAVNFCNTYGVTPSDDQLSQLQEVMSQALAQASYTVQDEVKTETGYTLEIVIDPIVNFSDMGDDIRQLRNQAQDEATQANSSASDEEDSYGSGDSYDESSDGDSYDSYDDYGSDDYGYGDDSSEDSSTMEDQDSSLGVGEEPVDANELFVDKVVELCQEQLSSLRYSGETVTITLDIRQTEEGELQLDTNQLDTIDRTVLQFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB67</accession>
    <name>R6YB67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02284</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31140">
        <property type="protein sequence ID" value="CDD31140"/>
        <property type="gene ID" value="BN815_02284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029144">
        <property type="entry name" value="Thr_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037158">
        <property type="entry name" value="Thr_synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14821">
        <property type="entry name" value="Thr_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thr_synth_N" evidence="6">
        <location>
            <begin position="2"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="PALP" evidence="5">
        <location>
            <begin position="105"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="502" mass="55169" checksum="A640931A14DF4B65" modified="2013-07-24" version="1">MRYKSTRNSQLRLEASQVIAQGISEEGGLFVPESFPDLSGELPALAKLDYPALAKAIFSKFLTDFTEAEIEACVSRAYTPEKFGGPCPVKLVPLSGSSEEKLLLELWHGPTCAFKDMALQILPHFLTTALQKAGGGKEAVILTATSGDTGKAALEGFKDVPGTRILVFYPRDGVSPMQKRQMATQEGANVAVCAIEGNFDDAQSSVKQIFTDPKLKEKLEAHGMLFSSANSINWGRLLPQIVYYVYAYLELVRQRKRILGEPMDVVVPTGNFGNILAAYYARKMGLPIRRLVCASNANKVLTDFIRTGTYDRRREFHATASPSMDILISSNLERLLYDLCGEDSETLSGWMKDLAETGVYSVGDAVRKKVQQLFYGGFCGDGSTFETIRELWDTEGYLCDTHTAVAVDVYRQYRAQSQERAVPTVIASTANPYKFSGSVLEALQAGLLAGDDFQNLEALERFTGIQAPAQLRALREKPERFTQVIPREGAAAYVLEALGIPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD89</accession>
    <name>R6YD89_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000136">
        <property type="protein sequence ID" value="CDD29244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29244">
        <property type="protein sequence ID" value="CDD29244"/>
        <property type="gene ID" value="BN815_01104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="221"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="29183" checksum="263D4ED1EB4D3169" modified="2013-07-24" version="1">MVVGDAVLCKLLLIAARGGQEPAGHGQHPQGAVGVRVADADLPLLPKGLFPVDAYAAPHGDHGPLHAGLFVGGHGSVAGGALAHGAQIQGGGAGPQGGGAVLLQGELGVIHRGQQALNGGGLGQMGLVVKVPQPADGGNGDVKGPAAGLAHRQGGVEDVPGLGVDVLELPAGLLVQGGDVAVLHPPGNQVFQLCHSGGGLLGGFLGPGAIDRLLDVRAHGVGGQGGAAAPGPQVQPQGGAQQHHRRPQQAQGEDTGLLFGDSVEQFLHGTLPLQSYGAVKGEGAGPRRGGASHFLGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDP5</accession>
    <name>R6YDP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29414">
        <property type="protein sequence ID" value="CDD29414"/>
        <property type="gene ID" value="BN815_01146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8790" checksum="9A5E4225EF313B54" modified="2013-07-24" version="1">MEASEQAVIQNLKDAGCCRETVERFLALGDAGDVQGQLQLLAQHRKCLLEKVHREERRIQCLDYLVYQMEKESPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDU1</accession>
    <name>R6YDU1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01163</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000149">
        <property type="protein sequence ID" value="CDD29454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29454">
        <property type="protein sequence ID" value="CDD29454"/>
        <property type="gene ID" value="BN815_01163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="344"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="381" mass="42036" checksum="F62E8F6A551628AC" modified="2013-07-24" version="1">MRYRELGRTGLQVSEIGLGAEWLERHNQEEVTAVIQRCESYGINILDCWMSNPEVRTKIGNAIQGHREKWIIQGHFGSTWENGQYVRNKELSAVKPAFQDLLDRLQTNYIDLGMIHFVDTEEDFHKVFEGPLLQYVKEQKAKGVIRHIGMSTHNPKTARLAALSGEIEMILFSVNPAFDLLPENDNLDAYFEAVTYTEGLGGIDPVREELYKLCEQRGVGLTVMKGYAGGRLFDARTSPFGVALTPVQCIHYALTRPAVASVLVGYDTPEHVDAAVAYETATEEERDYASVLAKAPHHAYGGQCTYCGHCAPCPAGIDIAMVNKLYDLATMQPEVPATVKAHYGALSATAADCIACGGCETRCPFGVPVVERMEKAKALFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDY1</accession>
    <name>R6YDY1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01168</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000153">
        <property type="protein sequence ID" value="CDD29489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29489">
        <property type="protein sequence ID" value="CDD29489"/>
        <property type="gene ID" value="BN815_01168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="7329" checksum="FB712DDD10790484" modified="2013-07-24" version="1">MNLLANPAEKELAAAPAPVAAELAAVPPERNTLPALLAPPPKPLSTRAAMTISMAMLEPVWATFRPMAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF45</accession>
    <name>R6YF45_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000026">
        <property type="protein sequence ID" value="CDD27221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27221">
        <property type="protein sequence ID" value="CDD27221"/>
        <property type="gene ID" value="BN815_00544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006490">
        <property type="entry name" value="Maj_tail_phi13"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01603">
        <property type="entry name" value="maj_tail_phi13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="21838" checksum="DCA76643856062B9" modified="2013-07-24" version="1">MGNKVKYNLKNVHAAKLTETDSDGTTTFSYAEPKAIPGAVSISLDAEGETSPFYADGIVYFRSVTNNGYSGDLEIALIPEWFRTEILQEKLDAKGVLVENSGVGESVKFALLFEFDGDVNAIRHVLYNCSASRPSIESETKEDTIEPGTETLSITADPRSDGLVKARTGDTTDAGTYANWYKAVYTPTEDEPEETTGQGGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFC7</accession>
    <name>R6YFC7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01340</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30014">
        <property type="protein sequence ID" value="CDD30014"/>
        <property type="gene ID" value="BN815_01340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045507">
        <property type="entry name" value="DUF6483"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20092">
        <property type="entry name" value="DUF6483"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="14689" checksum="42F10CA638BD3588" modified="2013-07-24" version="1">MLTEDYIVRMIRDMGQMLARVLGSQAWEPDRCAEVWEAAAGDCPPLLEELKALCGRGEINAAENLLFEELDFSDPGTLPIALAFYEHLNRFTDQELEARDYSREEIFEGVKDCAEQYGVDPQLLEAFRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFG9</accession>
    <name>R6YFG9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00597</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000033">
        <property type="protein sequence ID" value="CDD27346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27346">
        <property type="protein sequence ID" value="CDD27346"/>
        <property type="gene ID" value="BN815_00597"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437437" evidence="2">
        <location>
            <begin position="36"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="75"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="14065" checksum="B2D261B1C8FEBF28" modified="2013-07-24" version="1">MTTRKTKNNRIRIGALVLAMLLSFSLFAGCGNSKNAGGAGKKPTTSQSASSSKGSSHKKNSSSSKDKKGSSSKKNSSSSKKGSSSSKGSTSSKKDTSSKKDTSSKKDTSSKKDTSSKSSTSSQSGTSSQKAESSASSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFX2</accession>
    <name>R6YFX2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01482</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30239">
        <property type="protein sequence ID" value="CDD30239"/>
        <property type="gene ID" value="BN815_01482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="169" mass="19065" checksum="31B63453B570F66C" modified="2013-07-24" version="1">MAAIILEPVSTQSQIDTLCAIAKTVWHETYDDLLPPGQPDYMIEKFQSDHAVKEQMARENYRYVLAKLGEAYVGFVGYAPRYQGQEEMYLSKAYILPQGRGQGVVGALFRLVEEETKKEGLSRVRLTVNKGNAHAKAVYEHYGYRTVEAVQSDIGGGYVMDDYVMVKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG00</accession>
    <name>R6YG00_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27491">
        <property type="protein sequence ID" value="CDD27491"/>
        <property type="gene ID" value="BN815_00032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="104" mass="12756" checksum="25E0C9C06FD58453" modified="2013-07-24" version="1">MRDKYSIAQRNRVVEENLCCIDTVLRRNRRWVRHIRLEYDDLYQNLALCLILSVEEYDSSFGPLRPYLYRQLQEELRNNREYPRAEQEEYRDSQCVGIHRESSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGD4</accession>
    <name>R6YGD4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01645</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30424">
        <property type="protein sequence ID" value="CDD30424"/>
        <property type="gene ID" value="BN815_01645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="182"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="33250" checksum="44ACB22B13D7DC35" modified="2013-07-24" version="1">MERTGFQRELRDREVDVECRGFGPSFNMDNTHYHDCFEVYFQISGDRNLLSGGRFHHLEPGSVLWIPKFDLHQSFQGQQDTGTRAVLYFREEYLRGVLQERAGELLALFAGPFQVMRLDVFQRRKALELLYELEQGSRAGQELYARFVFGQLVLLLEAWSRAGGALPQEAAPTMGPKYDRIASVLAYLKNHREERLRLEDVARAFFVTPAYLSRSFKACTGLSFVTYLNHLKVERAKELLLREGSVTQVSLELGYESLTHFERVFRQIAGLSPTEWRKSQRPGEDKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGH8</accession>
    <name>R6YGH8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FeoA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01691</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000256">
        <property type="protein sequence ID" value="CDD30474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30474">
        <property type="protein sequence ID" value="CDD30474"/>
        <property type="gene ID" value="BN815_01691"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="2"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8047" checksum="2161EF97E0E26113" modified="2013-07-24" version="1">MKTLRDAKVGDTVKVVKLHGEGATKRRIMDMGITKGVEIHVRKVAPLGDPMELSVRGYELSVRKADAEMIEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGS2</accession>
    <name>R6YGS2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ORF">BN815_01757</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30544">
        <property type="protein sequence ID" value="CDD30544"/>
        <property type="gene ID" value="BN815_01757"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="14"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="129"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="357"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="365"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="418" mass="44889" checksum="D55CAA8934D5E7DF" modified="2013-07-24" version="1">MFNDLMDTIGFVTGQDPEVGQAMEKELARQRRNLELIASENIVSPAVMAAMGSVLTNKYAEGYPGKRYYGGCQCVDIVEDIARDRACQLFGAEHANVQPHSGAQANLAVYFALLQPGDTVLGMNLAEGGHLTHGSPVNMSGALYNFVAYGVDPETGRIDYDKLMAQALEVRPKLIVAGASAYPRAIDFAKFREIADACGAKLMVDMAHIAGLVAAGLHQNPVPYADVVTTTTHKTLRGPRGGLILCKEEYAKAIDKAIFPGTQGGPLMHIIAAKAVCLGEALQPAFKEYGQQVVNNAQALAKGLLDRGVKLVSGGTDNHLMLIDLTDSELTGKELERRLDEVYITANKNTVPGEKRSPFTTSGVRLGTPAVTTRGLKEADMDEIAACIALCMEDGFEGNIEAIRARVEAICQRYPLYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH91</accession>
    <name>R6YH91_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RadC-like JAB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01948</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0758 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30744">
        <property type="protein sequence ID" value="CDD30744"/>
        <property type="gene ID" value="BN815_01948"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08071">
        <property type="entry name" value="MPN_DUF2466"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037518">
        <property type="entry name" value="MPN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025657">
        <property type="entry name" value="RadC_JAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001405">
        <property type="entry name" value="UPF0758"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020891">
        <property type="entry name" value="UPF0758_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30471">
        <property type="entry name" value="PTHR30471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04002">
        <property type="entry name" value="RadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50249">
        <property type="entry name" value="MPN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01302">
        <property type="entry name" value="UPF0758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="MPN" evidence="7">
        <location>
            <begin position="87"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="241" mass="26804" checksum="FF1C58C33B484759" modified="2013-07-24" version="1">MKKKPVSKEEVQRRELLRQALDYVLPSGKAETAVSTLLGRFGGFSGVFLAPQEELAAVLGQPPARFLRLVTDLARAYLEDSSQDLARVYDADSAIALFRPKFLGRSTEAVCLMLLDSRGRLLYNDFITEGAVSAVPIYIRPLLQLCIRYDAQHVLLAHNHPSGNAAASRNDITATRQVEMALESIEATLNDHIIFAGEDTLSFAQCGWLGQIKEEVRDYRREELQAAREQEAAILWGDSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHL0</accession>
    <name>R6YHL0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000336">
        <property type="protein sequence ID" value="CDD30889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30889">
        <property type="protein sequence ID" value="CDD30889"/>
        <property type="gene ID" value="BN815_02051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="7315" checksum="7969CD168A1B2FD0" modified="2013-07-24" version="1">MFDFVEQPVVIRDYEYALVDRHPTPVVMQNGVQPVALFQEDVRSMCRPQSLLGSVFSFRKRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHN6</accession>
    <name>R6YHN6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02076</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30914">
        <property type="protein sequence ID" value="CDD30914"/>
        <property type="gene ID" value="BN815_02076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="43" mass="4696" checksum="4F5D88DCC4F15C67" modified="2013-07-24" version="1">MAAAFITGTSDPEADWDAYLNELSVKGVDQLLEIYQAGYDARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHS1</accession>
    <name>R6YHS1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02108</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000350">
        <property type="protein sequence ID" value="CDD30949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30949">
        <property type="protein sequence ID" value="CDD30949"/>
        <property type="gene ID" value="BN815_02108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="85"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="291" mass="32920" checksum="BC856C5A69A081FE" modified="2013-07-24" version="1">MEAKTNLEKKEKAIQRKNGLLTALTYLLLSIWAVVVLFPFYWMVLTSFKSYGAYNGERTPVFFTLSPTLENYENAFTAVPLLGYLLNTLIFSVITTAAMVVVSTLAAYAFARLKFKGKNLVFGLFLSMMMIPTELVVITNFVTITNWDMRNSFLGLILPSITSVFYIYLLKENFEQVPEELYKAAKVDGTSDLKYLWKVMIPICKPTLVTITILKLIECWNSYVWPRLITDDPAYYLVSNGIQEIRENGFGRENIPAMMAAVVVISVPLILLFLAFRKKIMEGVSQGGTKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHT4</accession>
    <name>R6YHT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00764</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28101">
        <property type="protein sequence ID" value="CDD28101"/>
        <property type="gene ID" value="BN815_00764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030489">
        <property type="entry name" value="TR_Rrf2-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01332">
        <property type="entry name" value="HTH_RRF2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="16188" checksum="5DBD8B4B88651848" modified="2013-07-24" version="1">MVMTLEADYAVRIVEYLTKHPERRDAKTISEETQIPLRFSLKILRELVAEGLVCSFKGAKGGYTLAKSPEEITLRQVIELVEGPYMLSRCQKEEYSCGREHCRLHSIYEKISEDVRRELESYTFAMICAPKPCSCCGEEAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI49</accession>
    <name>R6YI49_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein translocase subunit SecD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secD</name>
        <name evidence="10" type="ORF">BN815_02222</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000371">
        <property type="protein sequence ID" value="CDD31069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31069">
        <property type="protein sequence ID" value="CDD31069"/>
        <property type="gene ID" value="BN815_02222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01463_B">
        <property type="entry name" value="SecD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005791">
        <property type="entry name" value="SecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01129">
        <property type="entry name" value="secD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="336"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="392"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="421"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="471" mass="50464" checksum="0284F0DE656CE9DA" modified="2013-07-24" version="1">MKRVKKPVFFVVALLILALVVTSLFGVYGQHGDFKVTYIKGAGDIRWGIDIRGGVEATFSPADGVEATTEQLEAAKEIIETRMVSQSITDYEIYTDPTNNRIIVRFPWRSDEQDYDPEAAIDELAATAQLTFRQGMEYETSEYAEDGSIVYRTPSGTTAENIILEGSDVVTAEPRMTQDETTGEYQYVVALTLSDEGAQKFAQATTAMVGETISIWMDDVMLSAPTVKQAITTGECVITGDFTSEEATQLAARIQAGALPFALQVSSFSSMPPTLGAQALDAMLLAGIIAFVVISLLMIVIFRLPGVVAVISLAGQVGLCMAAISGYFPFLNSYTMTLPGLAGIVLSIGMGVDANVISASRIREELKGGKTLDGALKLGFSESFWAIFDGNITTLIVAVMLMGVFGPSNILSIIFGESTTGAIFSFGFTLLVGIIGNFIMGMTATRLMTLSLAGFKGLHKKWLFGGARGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIH5</accession>
    <name>R6YIH5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31204">
        <property type="protein sequence ID" value="CDD31204"/>
        <property type="gene ID" value="BN815_02348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="18"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9467" checksum="4224A6DBC4BFB6C9" modified="2013-07-24" version="1">MRLRNQPLGSKNLIGARVESARKEQGMKQKELLAQLQVRGVDLSASGLSKLEGQVRYVTDFELLALADILSVSVQWLLTGEEKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIL2</accession>
    <name>R6YIL2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Predicted membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02388</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000387">
        <property type="protein sequence ID" value="CDD31244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31244">
        <property type="protein sequence ID" value="CDD31244"/>
        <property type="gene ID" value="BN815_02388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010540">
        <property type="entry name" value="CmpB_TMEM229"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06541">
        <property type="entry name" value="ABC_trans_CmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="15308" checksum="ACC489264C992E75" modified="2013-07-24" version="1">MYQDALLFLTGSWAYPAIEMLWRGETHSSMALAGGICLCLINHICCGVLEDNNIFSRCLAGAGIITGVELVLGLVLNCLLGFDIWDYSNVPLNLLGQVCLPYSFLWMGISLPAMALCELCREDSLEEQARKIFTKKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIL4</accession>
    <name>R6YIL4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02393</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31249">
        <property type="protein sequence ID" value="CDD31249"/>
        <property type="gene ID" value="BN815_02393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="18684" checksum="C7CB04666737D08E" modified="2013-07-24" version="1">MSALPLTASCPWASLQSVTRQEISLRRMDSIGGLPFFRGSRSSRVNWWLRAFTAWEAERLSPRTWMPSPSRPLVSCSCRWTTARALRLTARWRSSRRALTARQVMCSTEARTQATAFSWADFTLMAAENSLVKSQQRRVSPLASRYSTRMSHTPSQRRVSSLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIM5</accession>
    <name>R6YIM5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptide deformylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02403</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31259">
        <property type="protein sequence ID" value="CDD31259"/>
        <property type="gene ID" value="BN815_02403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12194" checksum="5E39249AE3B74ABB" modified="2013-07-24" version="1">MGILRAVCVVDVGEGPIELVNPEIIATEGEQNGAEGCLSYPGEFGLVKRPMKVTVRAQDRDGNWFEKTGEALCARAFCHEIDHLHGVLFTSHVSRMLTPEELQNGIAEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIR7</accession>
    <name>R6YIR7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD(P)-bd_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31309">
        <property type="protein sequence ID" value="CDD31309"/>
        <property type="gene ID" value="BN815_00247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="9"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="34802" checksum="BD0442FEFA545E92" modified="2013-07-24" version="1">MGKLLLTGVDGNLGSQAAEYLLELEPVDNLIFCGYSEAALQKYADMGVETHVTNFNFSDGLQEAFAGADRLALISMPFVGAKRQNAHKNVVDAAKAAGVKQVVYTSLVNAGDETNPSVEKKDHIYTENYIKESGLDYIFLRNSQYAEAMITNYFTYVKLDGVLKNNQGDGKMAYISRKDCAKAVAYALHRGAEYDHATLNINGPELMTISQFIAYGNQGTGNQVSYQEITDEENYQVFDAMGVPRTTDGHFEKGSEAPYSSDGMVTFGQAIREGKMDVWTDDFQKLTGQQPMTVLYMFQHSDQFQVGERHSKDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIV3</accession>
    <name>R6YIV3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00286</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000410">
        <property type="protein sequence ID" value="CDD31354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31354">
        <property type="protein sequence ID" value="CDD31354"/>
        <property type="gene ID" value="BN815_00286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="9048" checksum="C7931CBD1F03383F" modified="2013-07-24" version="1">MLPLDKELETALFHRLDAKRCAVCGALFTPGSNRAKYCPECAVQVKPEDEYTVYEVEETDTDEEADLLNFDDLDRDEFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIX5</accession>
    <name>R6YIX5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31374">
        <property type="protein sequence ID" value="CDD31374"/>
        <property type="gene ID" value="BN815_00306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003709">
        <property type="entry name" value="Pept_M15B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02557">
        <property type="entry name" value="VanY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VanY" evidence="1">
        <location>
            <begin position="46"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="200" mass="22684" checksum="D5B9BDB2CD0E7FA3" modified="2013-07-24" version="1">MNWEPSPSPAPEEQEEAPWYLRLVNLENRLPQDFTVELAQVDGGQFDARAAEALSQMLADMEAQGLSPMVCSSFRTWEDQETLHQNKIGRLLEEGYSQEAAEAEASRWVVPAGASEHQLGLAADIVASQYQILEEEQENTPEQQWLMAHCQEYGFILRYPKDKTEVTGVGYEPWHYRYVGVEAAQEIMAQGICLEEYLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJA0</accession>
    <name>R6YJA0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 9">50S ribosomal protein L22</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplV</name>
        <name evidence="10" type="ORF">BN815_00370</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="5">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="6 9">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31494">
        <property type="protein sequence ID" value="CDD31494"/>
        <property type="gene ID" value="BN815_00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_L22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_L22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_L22/L17_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_L22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="PTHR13501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="SSF54843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 8" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12438" checksum="9941443E1B50213A" modified="2013-07-24" version="1">MEAKATLNYTRISPRKVGLVLDLIRNKPVDLAAAILKHTPKAACEDLEKLLKSAVANAENNFNMDRNSLYVSQCYVTPGPILKRIRPSAHGRAFRVLKRTSHITIVVKEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJM2</accession>
    <name>R6YJM2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00945</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28756">
        <property type="protein sequence ID" value="CDD28756"/>
        <property type="gene ID" value="BN815_00945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="139"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="40501" checksum="CA5658C1BD362447" modified="2013-07-24" version="1">MAKLKIGFIGCGGIANQKHLPGMAQQTEFVDLVAFCDLIPERAEKAAKEYGTPDAKVYTDYHDLLADPTIDAVHVLTPNVAHCEITVAALEAGKHVLCEKPMAATPADAQKMLDARDRTGKMLTIGYQYRHFPVNQVAKSVVDDGWLGDIYYAEATYLRRRGVPTWGVFTDKSKQGGGPLIDIGTHALDLTLFLMNNYDVDYVVGTSFEKLGTLLDPKDQGQVNHLGQQDNWNNKTYDVEDSAVGMIKMKNGAVINLRASWAINMVNETGATGEAYTMLAGTKGGLDTLSGQVRLNHVVGSQPAVTMVGNKIESYIPGFSQGPAPISKEHDIWVKALRGEGELFVTADQAFVVTKILDAIYQSSKTGKPVYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJP9</accession>
    <name>R6YJP9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28781">
        <property type="protein sequence ID" value="CDD28781"/>
        <property type="gene ID" value="BN815_00953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012878">
        <property type="entry name" value="Glyco_hydro_127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07944">
        <property type="entry name" value="Glyco_hydro_127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="643" mass="71495" checksum="D2215AFB91304CA9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJU3</accession>
    <name>R6YJU3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Biotin carboxyl carrier protein of acetyl-CoA carboxylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00441</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000442">
        <property type="protein sequence ID" value="CDD31684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31684">
        <property type="protein sequence ID" value="CDD31684"/>
        <property type="gene ID" value="BN815_00441"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001249">
        <property type="entry name" value="AcCoA_biotinCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01071">
        <property type="entry name" value="ACOABIOTINCC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00531">
        <property type="entry name" value="BCCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0092">Biotin</keyword>
    <keyword evidence="4" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="5">
        <location>
            <begin position="14"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="9612" checksum="AFFA18D0BC755339" modified="2013-07-24" version="1">MGVTHEAPQPAKEGTLVLSPTVGVFYSAPSPDARPFVEVGDQVKKGDTLCIIEAMKLMNEIPAELDGTVAEICVGNGQVVEFNQPLFRIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNW3</accession>
    <name>R6YNW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01545</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000218">
        <property type="protein sequence ID" value="CDD30311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30311">
        <property type="protein sequence ID" value="CDD30311"/>
        <property type="gene ID" value="BN815_01545"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="310"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="417"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="472" mass="48354" checksum="5F6E28066A301BF0" modified="2013-07-24" version="1">MGREGIIHSKPKTVSIIFLEAVLYSGTDKTWPVLGQGPGGLFLPLCPQSHPQHSQLFGRDAMLPGAGVWQIRALWGGCGGKRPPGGAVGRGAGGFPGVPAALPCRGACAVRGCHFGGDCHPVVPVGAERAEQSRAVRAYRHLFAPAADGDDLGAAQRLFKLHRGPVCGGVLFGGGVRLLPAAGRQPAAGPHRRRQAPLQPCVRQRGPGGAGGLCGGGGALLLWDYLWGRVPGQDSAGAAGAHLRPAGRRGRRHRGRGCRWGDSGAFHGGALLPLRGLRPRRAYGGGVLPHGQAGHGGGLYPLPRGGLHAGGGGLSGDDFAGRHRSGRGHHPVHGASQEPTAGPAVRRAQGHPQRRGPAGEHCAAAALRGGGPRPGAYLGGGDFPEALHHLRAQPSGGVRPLGGGHLRRVQRPGGLLAQAQRGDPGKLWPADQNPAGKGPSGHSGLYQGFLRALRALGGDAGRNQQELRPVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPM9</accession>
    <name>R6YPM9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00139</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000268">
        <property type="protein sequence ID" value="CDD30506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30506">
        <property type="protein sequence ID" value="CDD30506"/>
        <property type="gene ID" value="BN815_00139"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025827">
        <property type="entry name" value="Zn_ribbon_recom_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13408">
        <property type="entry name" value="Zn_ribbon_recom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Recombinase" evidence="2">
        <location>
            <begin position="146"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="367"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="425"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="487" mass="55760" checksum="4FBD3450D54D99D9" modified="2013-07-24" version="1">MSIENQHLALNEFVSSMPESTHAEVLEFIDNGYSGTNFERPKVQELIEMVRANKIDCIIVKDFSRFGRNSIETGYFIERVFPLFHTRFISINDDFDSDQHKGDTGGMDVAFKYLISEYYSRDMSIKTKSAKYAKMQRGEYQSKVCPYGYRKSADGRMEPNPETAAVVQLIFQLAATGIGAAAVTRELFKRGIPTPGEYKATHGQQYHDVSRSRGRWSSSTVLRILEDERYIGSYVIGRRAVIEVGGTRSRKKDRDKWFIIPDHHPAIVDKELFEKVQAVQRRFSLPTKKTREYPLKGKVYCGCCDHALSRIVPKRPFYMCRHSTADVNSRCRDVRADAAGLEEAVLLTLKKQLEILLPVHKDGTIHLEATAAKCSEYEKQMEVLKDQKQALFERYLLGQIELDTYKSEKAVYDTEILKVKNAYAAVTAQAKLKREEQARQSSRQEIAHSIEEADALTSELTDLLIEKVYVFPDNRIEIVYKVHDLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPP6</accession>
    <name>R6YPP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADP oxidoreductase coenzyme F420-dependent</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01739</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30526">
        <property type="protein sequence ID" value="CDD30526"/>
        <property type="gene ID" value="BN815_01739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="1">
        <location>
            <begin position="2"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="22109" checksum="AD8D36626AD01A53" modified="2013-07-24" version="1">MNIMIVGGGLLGRKTAETLDEAGHDVVLIDASPENLAQLSPDFSGVTAVGFPMDIKSLRSAGIEGCDAVAVTTPDDNLNITVGQIAKNFFGIPKVIARISDPYRENIFERFGLQTVCPTNMAGDKLVTALTSPWQSRQVSFGSTTISLEVVPVERRYVGHTTASVELRSGDGLFGVIKDEGQFLLKGKDGEIPLESGDSLVISRKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQI6</accession>
    <name>R6YQI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000331">
        <property type="protein sequence ID" value="CDD30841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30841">
        <property type="protein sequence ID" value="CDD30841"/>
        <property type="gene ID" value="BN815_02028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="11329" checksum="BD2552A8DAB2D33F" modified="2013-07-24" version="1">MWLTKRGDTTSGAKLRRGQVSGAGQGMTIQGESEYRSPELLFPYGYSSAAEEGDRAVMLDGVCAGIAAAPDGQLSQGEVRLYSAGGAEILLKNTGEVVINGQSFPAKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR47</accession>
    <name>R6YR47_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase epsilon chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP synthase F1 sector epsilon subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">F-ATPase epsilon subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">atpC</name>
        <name evidence="10" type="ORF">BN815_02160</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Produces ATP from ADP in the presence of a proton gradient across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 7">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the ATPase epsilon chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD31001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31001">
        <property type="protein sequence ID" value="CDD31001"/>
        <property type="gene ID" value="BN815_02160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12152">
        <property type="entry name" value="F1-ATPase_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00530">
        <property type="entry name" value="ATP_synth_epsil_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036794">
        <property type="entry name" value="ATP_F1_dsu/esu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001469">
        <property type="entry name" value="ATP_synth_F1_dsu/esu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020547">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020546">
        <property type="entry name" value="ATP_synth_F1_dsu/esu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036771">
        <property type="entry name" value="ATPsynth_dsu/esu_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13822">
        <property type="entry name" value="PTHR13822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00401">
        <property type="entry name" value="ATP-synt_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02823">
        <property type="entry name" value="ATP-synt_DE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46604">
        <property type="entry name" value="SSF46604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51344">
        <property type="entry name" value="SSF51344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01216">
        <property type="entry name" value="ATP_synt_epsi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6 7" id="KW-0139">CF(1)</keyword>
    <keyword evidence="6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 6 7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_DE_N" evidence="9">
        <location>
            <begin position="6"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_DE" evidence="8">
        <location>
            <begin position="88"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00530"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="15090" checksum="899A3511DFF430D8" modified="2013-07-24" version="1">MASTFYLEMVSPQDIFYSGNARQIILPGLDGAYGVLPNHEPMVTAITAGIVRYQDQEGRWHMCVASDGCVEVMPERVIVLAATIERAEDIDRNRALAAKHRAEERLRQKQSQHEYIQTQAALARALARLKAKPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRQ4</accession>
    <name>R6YRQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phage tail tape measure protein TP901 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00209</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31271">
        <property type="protein sequence ID" value="CDD31271"/>
        <property type="gene ID" value="BN815_00209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010090">
        <property type="entry name" value="Phage_tape_meas"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10145">
        <property type="entry name" value="PhageMin_Tail"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="582"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="612"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="domain" description="PhageMin_Tail" evidence="3">
        <location>
            <begin position="298"/>
            <end position="487"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="996" mass="105990" checksum="202D4CC4B4C95AA2" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSC0</accession>
    <name>R6YSC0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">DNA mismatch endonuclease Vsr</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00351</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the Vsr family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31451">
        <property type="protein sequence ID" value="CDD31451"/>
        <property type="gene ID" value="BN815_00351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00221">
        <property type="entry name" value="Vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004603">
        <property type="entry name" value="DNA_mismatch_endonuc_vsr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03852">
        <property type="entry name" value="Vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00632">
        <property type="entry name" value="vsr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="17167" checksum="ABD5C4CF36BA5658" modified="2013-07-24" version="1">MADVFDAEKRSDIMRQVKSKKNKSTELRLIEIFKQNGITGWRRNYPVKGHPDFVFPKKKIAVFVDGCFWHGHDCRNTRPADHQEYWQKKRERNMEHDREVTAMFEARGWTVLRIWECELKKKNLDCTVKKINQILSVERYPGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSW6</accession>
    <name>R6YSW6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00447</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31691">
        <property type="protein sequence ID" value="CDD31691"/>
        <property type="gene ID" value="BN815_00447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032688">
        <property type="entry name" value="ABC2_membrane_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12679">
        <property type="entry name" value="ABC2_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="300" mass="32917" checksum="86D0D9AB59BCFBF8" modified="2013-07-24" version="1">MGNLLSAGMYRLKYSKLFYILLGLLVVTLTLCYIQAIPQTVSLDVSPTEAVAHEEGYVTMEFEEPAPFYPLNSLFFQYVLLNLISCGVFCPLFLSHEYSDGVLRNKLIVGRNRTQIYLGNLTVNGLYGATATVLGILTGLCVGMPMLKGFGETEPSTLVIYGLFSLITTWACVSLFTMAAMIVANRAVAVALCIVLAFGLYFLGQFLTIGLSQPELLQGGLIWRPDGTFQMADPAPNPSYISGFKRQVYQFLYELTPGGQCFQIAEMGAETPWHLPVYAGLFTALTTGIGLAIFQRKDVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT39</accession>
    <name>R6YT39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4097 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31771">
        <property type="protein sequence ID" value="CDD31771"/>
        <property type="gene ID" value="BN815_00470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025164">
        <property type="entry name" value="DUF4097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13349">
        <property type="entry name" value="DUF4097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4097" evidence="1">
        <location>
            <begin position="61"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="36354" checksum="08D112D6BC1A0B65" modified="2013-07-24" version="1">MKRKQRFFKLSAIVGCILLGAGMLLCGAGFVGMGCNWNAFTYPRGGEPVAVSSFVEADAVDSIEIHASMGDVKIERASAANPEEVELVLAENVYQVVVQHGLLLVMPQDSYTATGQNGWNWYQLLNLHSNRDWDVTIRVPEKLLDSVFVETSMGTVDLSDLQAGSVTVQGDMGDVTLDNVSASESMTVTQSMGRVTLGNCQGGSLTLENDMGGTQVFQCRFESGNLQGSYGSCDVDESSFDALAVVTDMGDIHLTRSEAAGTVVCQAAQGSVFLERFASPDITLISDMGEVSGTIAGRQADYQITVDTDMGSSNLADQMTGGPNTLEVTTNMGNIELAFEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9I1</accession>
    <name>R6Z9I1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Site-specific DNA-methyltransferase (adenine-specific)</fullName>
            <ecNumber evidence="3">2.1.1.72</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00520</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyadenosine in DNA + S-adenosyl-L-methionine = an N(6)-methyl-2'-deoxyadenosine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:15197"/>
            <dbReference type="Rhea" id="RHEA-COMP:12418"/>
            <dbReference type="Rhea" id="RHEA-COMP:12419"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:90615"/>
            <dbReference type="ChEBI" id="CHEBI:90616"/>
            <dbReference type="EC" id="2.1.1.72"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.72" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000017">
        <property type="protein sequence ID" value="CDD27147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27147">
        <property type="protein sequence ID" value="CDD27147"/>
        <property type="gene ID" value="BN815_00520"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023095">
        <property type="entry name" value="Ade_MeTrfase_dom_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012327">
        <property type="entry name" value="MeTrfase_D12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30481">
        <property type="entry name" value="PTHR30481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02086">
        <property type="entry name" value="MethyltransfD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00505">
        <property type="entry name" value="D12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="255" mass="29541" checksum="C7F96BF87AF76E76" modified="2013-07-24" version="1">MMYVEVFGGGGSVLLNKERSVREVLNDANGNLINLYRVVREHPEELKDRLLYVLHSREDFKIAQRRLAQFAYKDDILRAADFYQVVRQSYAGNGKQFSPVARSMWAGFPAIDRVAGRLQGVTLEKEDFGVMFQRYDSPTTVFYIDPPYFFTEDYYPGNIFLRSDHQRLAAILLNAEGLWLLSYNLCPEVLELYQQPGILIEEVDRINNMAQRYEGGAVYQEVLISNYDTRKSAQAQLHLFEPAAEERKILWNGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9Z8</accession>
    <name>R6Z9Z8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Two component transcriptional regulator winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00574</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27302">
        <property type="protein sequence ID" value="CDD27302"/>
        <property type="gene ID" value="BN815_00574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="4"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="125"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="125"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="25157" checksum="6B01053D9462C155" modified="2013-07-24" version="1">MAYRILVADDEADIARLLQDLFTRQGYQVLAACGGKEALELCSQKPDLILLDVNMPDMDGFTLCRQIRDFVSCPILFLTARIEDADKVMGFAAGGDDYILKPFSNQELLARVAAHLRREERRQGQAQVKFDQGLVIDYGARCLYQDGQPVHLAKKEFDIVELLSMHPSQVFGRERIYESVWGWDSEGDSSVVAEHIRRIRAKLTAAGCGDRIATIWGVGYKWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAT9</accession>
    <name>R6ZAT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00661</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27577">
        <property type="protein sequence ID" value="CDD27577"/>
        <property type="gene ID" value="BN815_00661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="333" mass="36536" checksum="1E8A53A8AE115E8B" modified="2013-07-24" version="1">MKLDFHTHGKLAKRLPFSTVYTDWLFGEAKNAGLDALCLTEHFNTLQFDELYGYLSARSAREGDALVLGNGLRVFPGMETDIAEGGHILSIGPLEAILELNQRLAPHKAPGNFLPFAQLRDLFDQYPVVVGGAHPYREGGHIPQLPREQLARLDFLDLNGKDLATDRQQAEQRTYGLGRQLGVPVVSGSDTHQAVQYGCVWTEFQRDCSTAAELLQEMQAGRYTITVSESAAEKVRCACLLKRALKEIHALGGDYVAVLTGPEKDQEHGPSYAERIAVHHKAVVVEYAPKAGAMAEALERAANEMALQGWELVSSTVTPAAKGILLFRKRGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZD95</accession>
    <name>R6ZD95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00850</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000091">
        <property type="protein sequence ID" value="CDD28472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28472">
        <property type="protein sequence ID" value="CDD28472"/>
        <property type="gene ID" value="BN815_00850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="54" mass="5630" checksum="4B8CAD94FBEAF024" modified="2013-07-24" version="1">MNGDLSPEDVAALREETPLGRTGTPREAGEAIAYLLEAEFLTGQVLGLNGGMVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDF7</accession>
    <name>R6ZDF7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative membrane protein insertion efficiency factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00867</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be involved in insertion of integral membrane proteins into the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0161 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28527">
        <property type="protein sequence ID" value="CDD28527"/>
        <property type="gene ID" value="BN815_00867"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00386">
        <property type="entry name" value="UPF0161_YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002696">
        <property type="entry name" value="Membr_insert_effic_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33383">
        <property type="entry name" value="PTHR33383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01809">
        <property type="entry name" value="YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01234">
        <property type="entry name" value="Haemolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00278">
        <property type="entry name" value="TIGR00278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="60"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="9233" checksum="FF5F4A5B64E4E3FD" modified="2013-07-24" version="1">MKRALLWLIRFYRSAISPRKPAMCKYIPTCSQYGLEAIERFGAFKGGLLTLWRILRCNPWSRGGYDPVPEKKDKRKKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDX7</accession>
    <name>R6ZDX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PASTA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00934</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28732">
        <property type="protein sequence ID" value="CDD28732"/>
        <property type="gene ID" value="BN815_00934"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005543">
        <property type="entry name" value="PASTA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03793">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00740">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51178">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="348"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="2">
        <location>
            <begin position="46"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="3">
        <location>
            <begin position="388"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="3">
        <location>
            <begin position="460"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="534" mass="57636" checksum="FD239BCF55C6B651" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFW7</accession>
    <name>R6ZFW7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01132</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000143">
        <property type="protein sequence ID" value="CDD29357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29357">
        <property type="protein sequence ID" value="CDD29357"/>
        <property type="gene ID" value="BN815_01132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="46" mass="4647" checksum="804CB465AED5F033" modified="2013-07-24" version="1">MRTTVESSQKTKATAPTATTSSTTTPAGLLKAEATPLLKLSPSEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG52</accession>
    <name>R6ZG52_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF3502 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01153</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29437">
        <property type="protein sequence ID" value="CDD29437"/>
        <property type="gene ID" value="BN815_01153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022627">
        <property type="entry name" value="DUF3502"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12010">
        <property type="entry name" value="DUF3502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426662" description="DUF3502 domain-containing protein" evidence="2">
        <location>
            <begin position="35"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3502" evidence="3">
        <location>
            <begin position="388"/>
            <end position="522"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="520"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="542" mass="59274" checksum="7CA7A65A5EF27225" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG95</accession>
    <name>R6ZG95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AAA+ superfamily ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01167</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000151">
        <property type="protein sequence ID" value="CDD29477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29477">
        <property type="protein sequence ID" value="CDD29477"/>
        <property type="gene ID" value="BN815_01167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_14" evidence="1">
        <location>
            <begin position="20"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4143" evidence="2">
        <location>
            <begin position="204"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="403" mass="46934" checksum="C149113D6B89BA50" modified="2013-07-24" version="1">MIQRERYMQEIRDFMDKPVVKIITGMRRCGKSALLELTREELRRRGVQEQNIISMNFESLRYEAFKDYRALYQEVCKRADRAQGKVYILLDEIQEVDSWEQVINSLRVDLDCDIYVTGSNAKLLSGELATLLAGRYVEIRVYPLDFREYLDFAAENPEEASLSQQEQFANFLRFGGLPGIHQMKWEETRVMQYLHDIYNSVLLKDVIARNKIRDTALLESVIAYLMDNIGNTFSAKTITDFLKKQGRKLSAETVYNYLRALESAFLIHKAVRFDIKGKRILETQERYYLSDLGLRHAVIGYRDNDIAGVLENIVYLELLRRGWTVHIGKQDVAKVDFVASRADERLYIQVCYVLTPENTEREFGPLEGISDNYEKLVLSTDTLLRINRGGIRQKNIVDFLLET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI72</accession>
    <name>R6ZI72_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative ABC-type multidrug/protein/lipid transport system ATPase component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01392</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000197">
        <property type="protein sequence ID" value="CDD30147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30147">
        <property type="protein sequence ID" value="CDD30147"/>
        <property type="gene ID" value="BN815_01392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="164"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="245"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="23"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="337"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="370"/>
            <end position="377"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="571" mass="62756" checksum="B34FCBF1E82CA2B5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZID3</accession>
    <name>R6ZID3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsB</name>
        <name evidence="8" type="ORF">BN815_01455</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30212">
        <property type="protein sequence ID" value="CDD30212"/>
        <property type="gene ID" value="BN815_01455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01425">
        <property type="entry name" value="RPS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00291_B">
        <property type="entry name" value="Ribosomal_S2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001865">
        <property type="entry name" value="Ribosomal_S2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005706">
        <property type="entry name" value="Ribosomal_S2_bac/mit/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018130">
        <property type="entry name" value="Ribosomal_S2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023591">
        <property type="entry name" value="Ribosomal_S2_flav_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12534">
        <property type="entry name" value="PTHR12534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00318">
        <property type="entry name" value="Ribosomal_S2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00395">
        <property type="entry name" value="RIBOSOMALS2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52313">
        <property type="entry name" value="SSF52313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01011">
        <property type="entry name" value="rpsB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00962">
        <property type="entry name" value="RIBOSOMAL_S2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00963">
        <property type="entry name" value="RIBOSOMAL_S2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30212.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="28174" checksum="89F6FBFC2DA7FB96" modified="2013-07-24" version="1">MAVVSMKQLLEAGVHFGHQTRRWNPKMAPYIFTERNGIYIIDLQKTVKKLEEAYNFVRDLSAEGKSVLFVGTKKQAQESIREEATRAGAFYVNARWLGGMLTNFTTIRTRIQRLAQLRKMEEDGTFDLLPKKEVSKLQLEIEKLERFLGGIKDMKSYPGALFIVDPRKERIAVSEARNLGIPIVAIVDTNCDPDEIDYVIPGNDDAIRAVKLIAGAMADAIIEGREGQMGAAAKEAAEAEADAEEAGDINVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIZ3</accession>
    <name>R6ZIZ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01648</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30427">
        <property type="protein sequence ID" value="CDD30427"/>
        <property type="gene ID" value="BN815_01648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="48"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="157"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="360" mass="39636" checksum="F9E1FDF068244F36" modified="2013-07-24" version="1">MAAKDGMFYAAKGKPDPVVKPGEFVFSAVGLDHGHIYGMTSGLLDAGATLKYVYDPDPQKVEAYRKAYPQAIAAESEEQVLADPETKLVAGACVTSERAALGIRVMQAGKDYFTDKAPLTTLEQLEDVKRTVAETGRKYMVNYSERLQVEAAVYAGELVQAGAIGKVVQVIGMGPHRLNAPSRPAWFFEKEKYGGILCDIGSHQIEQFLFYTGAKDAKVVHSKIANYNHPDTPELDDFGDATLVADNGATGYFRVDWFTPDGLSTWGDGRTFILGTDGYIELRKYVDLARSTEENHVFWADKEGEHYFNATGKTGFPFFGQLVLDCIHRTENAMTQEHALKAAELCVRAQLQAEDLSHRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJB9</accession>
    <name>R6ZJB9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Rubredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01755</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30542">
        <property type="protein sequence ID" value="CDD30542"/>
        <property type="gene ID" value="BN815_01755"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="5">
        <location>
            <begin position="181"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="24130" checksum="54A7FFC93CCFEC5D" modified="2013-07-24" version="1">MKPLVLGNLSYGMYAIGVKDGSRPNACIANTVMQISKATPSDAALVAVALSKENYSCQCVEQEGIFSISVLSQDTPATVIGALGFVSGRGVDKLGNIRHKVLIEGVPVIKENTCCWFLCKVQEKLDLPGQVVFVAEIIAGSDEAVGTPMTYKYYVEQLGGASPKYSPTYLPPARTFDKSSGESFVCSVCGYVYRDPNFGFEELPADWTCPVCKMPKKAFVRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJI0</accession>
    <name>R6ZJI0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Isopentenyldiphosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01818</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30607">
        <property type="protein sequence ID" value="CDD30607"/>
        <property type="gene ID" value="BN815_01818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="29"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="178" mass="19874" checksum="AFF4E049361ECDC5" modified="2013-07-24" version="1">MPELWDLYDIDRRPLNRTIQRGEALPEGTYHLAVGIAVFHTKGDILLTQRAQVKSQYPGCWEIPGGCAQAGETSLEAACRELGEETGIVVQPGELVPLLRELLPGAHLDMFAVTKDVPLSQLALQPGETTAAQWLPFGEWLGRVGDGLYLTPSWHKEPDVPLYPRLQQYRDGKRDYIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJL4</accession>
    <name>R6ZJL4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">UPF0122 protein BN815_01849</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01849</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 3">Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the UPF0122 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30642">
        <property type="protein sequence ID" value="CDD30642"/>
        <property type="gene ID" value="BN815_01849"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00245">
        <property type="entry name" value="UPF0122"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007394">
        <property type="entry name" value="UPF0122"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40083">
        <property type="entry name" value="PTHR40083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04297">
        <property type="entry name" value="UPF0122"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="47"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="13944" checksum="90199E2A6CB2E8A7" modified="2013-07-24" version="1">MAKDLRISFLLDFYGDMLTDTQREVVDAYYNEDLSLAEIAQDRDITRQGVRDAIKRAEQQLLEMEERLGLARRFQEIQKALTLICDCALAIQDFNEQNGRVPGIDENAGKILECAQEISMEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJM4</accession>
    <name>R6ZJM4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30652">
        <property type="protein sequence ID" value="CDD30652"/>
        <property type="gene ID" value="BN815_01859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="68"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="159" mass="18266" checksum="D7A882E3C0D91A65" modified="2013-07-24" version="1">MSNNQATIEDLIDEMYDLLDKGWKMPLSAGKMFVDGEEVRQILDEIKEEIPSEVRKAKAIVADRAQILDEAQREAETIIRVAEEKAKAMVNQDEIVRQAQQKANELIAQAQQKFKEMRKASNDYVDDLMRRADESLSENLAELRKTRQSIKASQRNSQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJW7</accession>
    <name>R6ZJW7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">UvrD/REP helicase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30747">
        <property type="protein sequence ID" value="CDD30747"/>
        <property type="gene ID" value="BN815_01951"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0347">Helicase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="409" mass="44925" checksum="349306E73324C1E5" modified="2013-07-24" version="1">MFYADLHIHSRYSRATSRDCDLPHLDLWARKKGIALVGTGDFTHPAWRQELQEQLLPAEEGLYRLKEAYRLPWDSAWPQGEPRFLVTGEISSIYKQGGKTRKVHNVLLLPSLEAAEKLALRLERIGNLQADGRPILGLSSHDLLELTLETCPQAVFLPAHIWTPHFSLFGAFSGFDSLEECFGDLAPYVRAVETGLSSDPPMNGRVPQLDALQLVSHSDAHSPQKLGREADVLETELSYPAVKRALETGDGLWGTVEFFPQEGKYHWDGHRNCGVCLSPREAKALGNRCPVCGKPLTIGVEHRVEDLARRQPGEGPAHAKPFVRLAPLATVLAARLGKGEQTKTVQGVYEALLAQLGPEFTVLRQTPAEAIASLAGEAAAQGVELLRQGQVAWRPGFDGEYGKLSFPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK53</accession>
    <name>R6ZK53_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02024</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000330">
        <property type="protein sequence ID" value="CDD30837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30837">
        <property type="protein sequence ID" value="CDD30837"/>
        <property type="gene ID" value="BN815_02024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="384"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="450" mass="48016" checksum="6BA94D112F2D23F0" modified="2013-07-24" version="1">MTEGSPIRLLISFALPLMVGNVFQQLYTVVDTAVVGQFVGVSALASLGAADSPNWGVLGIIQGLTQGFSILMAQHFGAKDYRELSRSVGASVTLCLVFTVLLGVGGQLWAEPLLRLLNTPQDVLPGALLYLRIVYGGIPAIMAYNFLAAILRALGDAKTPLYAIVVAALMNVALDLLFVVGFHWGIAGAAIATVVSQVASAVYCFFNVRKITILQVLPGDLKPSRDLTLTLLKLGFPMALQNAIIAMGSMVVQFVINGYGMLFLAGFTATNKLYGLLEIAATSYGFAVTSYVGQNLGARLVNRIKRGQRAAAVVAFLTSVVIAAAMLLFGRLVLGLFISGEPAEVEASLDIAYHYLSIMSVCLPILYMLHIYRSALMGLGDTVVPMLSGFAEMVVRIGVALLLPLVMGQEGIYYAEVGAWTAAAILLVAAYYARMRALSRRKGFALDEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKU1</accession>
    <name>R6ZKU1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome C biogenesis protein transmembrane region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02211</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31057">
        <property type="protein sequence ID" value="CDD31057"/>
        <property type="gene ID" value="BN815_02211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD" evidence="2">
        <location>
            <begin position="7"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="219" mass="23570" checksum="B082F658A2B3BE44" modified="2013-07-24" version="1">MQYFISFLEGIITFVSPCLLPMLPIYISYFAGDSERDTKRVVKNALGFILGFTLVFVLLGALAGSLGTLLQEYSAVVNLVTGLIVIFFGLNFLGVFRVNLFRGTKLGNVEHLGFFSSLLFGVVFSVGWTPCVGAFLGSALLLATSQGNVLQGVAMLLLYSLGLGVPFFISAVLIDRLKGAFSFIKRHYRVINLVSGGFLVAIGVLMATGLFGKFLALLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL18</accession>
    <name>R6ZL18_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 11">Trigger factor</fullName>
            <shortName evidence="9">TF</shortName>
            <ecNumber evidence="9">5.2.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">PPIase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">tig</name>
        <name evidence="14" type="ORF">BN815_02286</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9 10">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="9">About half TF is bound to the ribosome near the polypeptide exit tunnel while the other half is free in the cytoplasm.</text>
    </comment>
    <comment type="domain">
        <text evidence="9">Consists of 3 domains; the N-terminus binds the ribosome, the middle domain has PPIase activity, while the C-terminus has intrinsic chaperone activity on its own.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 11">Belongs to the FKBP-type PPIase family. Tig subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31142">
        <property type="protein sequence ID" value="CDD31142"/>
        <property type="gene ID" value="BN815_02286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00303">
        <property type="entry name" value="Trigger_factor_Tig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005215">
        <property type="entry name" value="Trig_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008880">
        <property type="entry name" value="Trigger_fac_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037041">
        <property type="entry name" value="Trigger_fac_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008881">
        <property type="entry name" value="Trigger_fac_ribosome-bd_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036611">
        <property type="entry name" value="Trigger_fac_ribosome-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30560">
        <property type="entry name" value="PTHR30560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05698">
        <property type="entry name" value="Trigger_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05697">
        <property type="entry name" value="Trigger_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003095">
        <property type="entry name" value="Trigger_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102735">
        <property type="entry name" value="SSF102735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00115">
        <property type="entry name" value="tig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 9 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 9 11" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 10" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="13">
        <location>
            <begin position="164"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="427"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="480" mass="54276" checksum="72B51646B9E76311" modified="2013-07-24" version="1">MNVKATNKVETNRYELELEVSSEEFNEAINTVYKRESKKMNIPGFRKGHAPRAFIEKYYGEEVFYEAAIDHLYRPMVMEAVEKSGLQVISIGEFKIDEIGKDKGILCKLNVVTKPEATIEGYKGIEVTRPSVEVTSEDVDREIDRVRERNSRMITVEGRAAENGDIVTIDFDGYLDGKQFDGGKADNYELTLGAGQFIPGFEDQVVGHSVGDEFEVNVTFPEDYHAEELKGKPAVFKIKLHEIKAKELPTVDDEFAKDVSEFDTLDEYKQDIEKHLKEQREKAADNDVENQLVEAIIEKVQAEIPDEMVENEVDEIINSFAYRLQSQGLKLETYLKYTGQTTDDLRVQYKPQAERQVKVRLGLEKIAELEGLKPTEEETEAEYQKLADAYGMPLESVKNLVTVEGINGDIQNQKAIDLVKANAVVVEKKAEEEQTEEKKPAKKRASTKKKAEAAEGEEAAEKPKRRSAKKAESAEEKTEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLC6</accession>
    <name>R6ZLC6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Small ribosomal subunit biogenesis GTPase RsgA</fullName>
            <ecNumber evidence="7">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rsgA</name>
        <name evidence="10" type="ORF">BN815_02396</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31252">
        <property type="protein sequence ID" value="CDD31252"/>
        <property type="gene ID" value="BN815_02396"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04466">
        <property type="entry name" value="S1_YloQ_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01854">
        <property type="entry name" value="YjeQ_EngC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01820">
        <property type="entry name" value="GTPase_RsgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030378">
        <property type="entry name" value="G_CP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004881">
        <property type="entry name" value="Ribosome_biogen_GTPase_RsgA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010914">
        <property type="entry name" value="RsgA_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031944">
        <property type="entry name" value="RsgA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32120">
        <property type="entry name" value="PTHR32120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03193">
        <property type="entry name" value="RsgA_GTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16745">
        <property type="entry name" value="RsgA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00157">
        <property type="entry name" value="TIGR00157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50936">
        <property type="entry name" value="ENGC_GTPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51721">
        <property type="entry name" value="G_CP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CP-type G" evidence="9">
        <location>
            <begin position="67"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="ENGC_GTPASE" evidence="8">
        <location>
            <begin position="76"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="116"/>
            <end position="119"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="164"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="33426" checksum="0A78EF615900FE83" modified="2013-07-24" version="1">MGAKQLEGLVRKGIGGFYTVETPEGLYTCTARGKFRKARISPYAGDRVRILAEEDGTGALEEILPRRNFLVRPPIANIDQLFIVSSLRDPYPEPLIVDKTIAVAELEDIQPILVLTKTDLEGPSPLKEVYDLAGVPCLEVSSVTGQGVDQVRQLLAGKVSAFTGNSGVGKSTLLNALFPEFALKTGEVSQKLGRGRHTTREVELYKLEGGGYVADTPGFSTFDIERYRLTDKEKLPYGFREFLPYLGQCQFTSCSHTCEKGCAILQAVEKGEIPRQRHESYCAMYQEIKDVKQWQQKNKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLM2</accession>
    <name>R6ZLM2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase_AAA_core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00284</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000409">
        <property type="protein sequence ID" value="CDD31352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31352">
        <property type="protein sequence ID" value="CDD31352"/>
        <property type="gene ID" value="BN815_00284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase_AAA_core" evidence="1">
        <location>
            <begin position="45"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="419" mass="47244" checksum="165D60F3A8BB0726" modified="2013-07-24" version="1">MLLQFKAINFQSIKEEAILSMVPSSDKSHPENLAHMGKRDALKSAAIYGANAAGKSAVIRAFVAAIMAVRTSDTRNITQKIPGMVPFKFAEETVKGPCSFEFYFVTQNGVPYRYGFTADADHVHEEYLYYYASARPSRVFERTGEKFMYNQTDEGAFSKYEEKNTPNKLFLATATNWGNTKTAPAYQWLANAIDVYNPELAMQPTALQAFEQDEQGELKQFTLSLLRQADINIDDIQVDITPLGNQTKEIVFTDPAGNPVPQGQVKAVHIHAGHYVQSQSGEGSQFFLDLNEESLGTKQLFWLSPILKEVFGKGKTMVIDELDRSLHPFLVQFLVELFHTPEINQTNAQLIFTTHDTTLLSLDTFRRDQIYFVEKDPHTAATELYSLDEFSVRKNENIEKGYLLGRYGAIPYLRPEGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLX8</accession>
    <name>R6ZLX8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Phenylalanine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="14">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Phenylalanyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="14">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">pheT</name>
        <name evidence="19" type="ORF">BN815_00353</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="14"/>
    <dbReference type="EMBL" id="CBGU010000423">
        <property type="protein sequence ID" value="CDD31457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31457">
        <property type="protein sequence ID" value="CDD31457"/>
        <property type="gene ID" value="BN815_00353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02796">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00283">
        <property type="entry name" value="Phe_tRNA_synth_beta1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005121">
        <property type="entry name" value="Fdx_antiC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036690">
        <property type="entry name" value="Fdx_antiC-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004532">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033714">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PTHR10947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03147">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00896">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54991">
        <property type="entry name" value="SSF54991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00472">
        <property type="entry name" value="pheT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51447">
        <property type="entry name" value="FDX_ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 14" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 14 19" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 14" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 15" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="40"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="B5" evidence="18">
        <location>
            <begin position="400"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="domain" description="FDX-ACB" evidence="17">
        <location>
            <begin position="698"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="455"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="461"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="464"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="465"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CDD31457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="787" mass="87914" checksum="FDA95FBC44F69D0F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM64</accession>
    <name>R6ZM64_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00388</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31512">
        <property type="protein sequence ID" value="CDD31512"/>
        <property type="gene ID" value="BN815_00388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06088">
        <property type="entry name" value="KOW_RPL14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041985">
        <property type="entry name" value="RPL14_KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9158" checksum="B047D6BC5F3048AC" modified="2013-07-24" version="1">MEWRRGQVARSLAGHDKGTFLAVLEVAPPYAVVADGKARPLERPKRKKLFHLAPTGTALPEEALETNRKLRNALRPFAEAAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWG4</accession>
    <name>R6XWG4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cysteine desulfurase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00748</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28058">
        <property type="protein sequence ID" value="CDD28058"/>
        <property type="gene ID" value="BN815_00748"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010969">
        <property type="entry name" value="Cys_dSase-rel_unknwn_funct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01977">
        <property type="entry name" value="am_tr_V_EF2568"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="4">
        <location>
            <begin position="2"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="380" mass="41114" checksum="4EADE3EF79549C02" modified="2013-07-24" version="1">MIYLDNSATTYPKPQGVRQAVQRAFTDYGANPGRSGYGMCLRTTQAVYQVRQQAAEFFGAPGPECVLFQPSCTQALNVVLKGFLKPGDHVVITDLEHNAVTRPLEALKARGVTYTVAKVSPGDNDATVNAFRQAIGPKTRLAVCTMASNVFGIRVPVERIAALCHQYDVALCVDAAQGAGLFPIHMGESGIDYLCCAGHKGLYGPMGTGLLLVREPERLLGTLVEGGTGTQSRSFQMPQEAPERYESGTVNVPGILGLGAGLEFVRRRGVERICQEELQKLRYLHGRLSRLGKVTLYTPPPEERFSAPVLSFNLEGVPSERVGEFLAQGGIAVRCGLHCAPLAHEKLGTLETGTARVSPSAFTRKEDLDALAARLSRWRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWJ3</accession>
    <name>R6XWJ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28103">
        <property type="protein sequence ID" value="CDD28103"/>
        <property type="gene ID" value="BN815_00765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="874" mass="89011" checksum="4038A69ACFABE0DC" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWT4</accession>
    <name>R6XWT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-oxoacid:ferredoxin/flavodoxin oxidoreductase gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00786</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28208">
        <property type="protein sequence ID" value="CDD28208"/>
        <property type="gene ID" value="BN815_00786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR" evidence="2">
        <location>
            <begin position="12"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="19876" checksum="7520A59D15D5D75B" modified="2013-07-24" version="1">MKNLNILFAGFGGQGVLFAGKVVAYAALIANKQLSWLPSYGPEMRGGTANCSVCVSDEAIGSPLVTNPNVFIAMNLPSFDKFINAVEPGGVVIVDSSLIDKKVERDDVTVYYVPSTSLADENGVNGLSNMILIGKLFKEVCMADGDYKFCDEDILDQAVQKCIPARKAQMLDFNRKAIQIGQEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYW3</accession>
    <name>R6XYW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000110">
        <property type="protein sequence ID" value="CDD28943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28943">
        <property type="protein sequence ID" value="CDD28943"/>
        <property type="gene ID" value="BN815_01011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="434" mass="44460" checksum="9F448D55C5841DD1" modified="2013-07-24" version="1">MEPVPLALAPQAEGVGGLHRAGDVEIALEHLGEVHNVGDLPALQIDLQHLVLHGLTLQVGGQSQDGALGAPVDVVVELVLAQVEDLGHLAEAVEPGHLGAAHAGDKAAVVVPQEAVGVVALQHHLVAHDAVVVVEEGVAVLPADAHGVVQAVGERLGAVAVHGLQGHGVARGGLRHIDGEGGGLGLLALAVIGGEGDGVLHAGHQADEQEFLHPAVAVLPGVVGPGGVVGDGVVLHRDGVLHLGGVAGAKVQVQPVGAGAEGVQDGQGGSHGVVPLLGQAQQRGGQAVLDFLVVVGKALVLVLVGDDLGDFNGGLHRVGVHGDLLGGFPIGHVAGVNLPIGAGGDFRLDEGVCHGAGDEVGSHGQHHQRRHHDQNDEALFPRFCGLVLVQLSIHPFRCFYPAHWQRGRRQFPALLANLRIIIIDFLRRLSRDFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZQ2</accession>
    <name>R6XZQ2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01107</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000136">
        <property type="protein sequence ID" value="CDD29248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29248">
        <property type="protein sequence ID" value="CDD29248"/>
        <property type="gene ID" value="BN815_01107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="200"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="260"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="482" mass="54035" checksum="1D8807648509BEF9" modified="2013-07-24" version="1">MRTRRPLGIWGQILCGFGIFILVVAALLWLFQIVLLDPFYRAVKTTEVKATAETVQHALEASDMNEQVRQMCLNTGINIVVTDEHGQMLSGWKASEKESYLENLSRSRLNMSNLFNEVNLKGGDQLMVARSPFVNQDGTQDEVILYVTITRTPSGLNRMVLLESAITPVDSLKETLQVQVTTLTVVMAAMGVLLALFIARRISRPLADINESAKVLAKGDYAIRFGEHGAREVRELARTLNYAAGELSKVEGLRRDLLANVSHDLRTPLTMIKGYSEVMRDLPGENTPENVQIIIDEAERLTNLVNDLLDLSKLEAGVLPLEKTRFNLTESIRGILHRYDKLADYHFPFLYREEVWVDADELKISQVVYNLVNNAITYSGKDKTITLRQELWQGKVRVSVTDTGEGIPQDKLKDIWERYYKVDKEHKRAQMGSGLGLSIVKNILDMHGGTYGVTSTLGQGSTFWFELPVAQQTPEGLPGPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZY5</accession>
    <name>R6XZY5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="1">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01125</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000141">
        <property type="protein sequence ID" value="CDD29328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29328">
        <property type="protein sequence ID" value="CDD29328"/>
        <property type="gene ID" value="BN815_01125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transgly" evidence="3">
        <location>
            <begin position="49"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="26104" checksum="E43BE2047647C7C6" modified="2013-07-24" version="1">MKVLRMVRNLVLLVLGVILCAILALAFLGWQMYTQALEATPLDQKVKQVRAQESYTTFAELPETYVDAVIAAEDHRFYQHNGIDVIAIGRAVVNDIKAMSFVEGGSTITQQLAKNLYFTQEKRLTRKAAEMFMAFHIEANYTKEEIFELYVNSIYFGSGCYDVASASQAYFGVEPSQMDANQCTLLAGIPNAPSVYDLNVNPDLATQRQRQVLTLMVEHQYLTADQASAIQPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0B0</accession>
    <name>R6Y0B0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Rubrerythrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01162</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000149">
        <property type="protein sequence ID" value="CDD29453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29453">
        <property type="protein sequence ID" value="CDD29453"/>
        <property type="gene ID" value="BN815_01162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01041">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="3">
        <location>
            <begin position="3"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Rubredoxin-like" evidence="2">
        <location>
            <begin position="141"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="20121" checksum="AB80FD287E08B1E8" modified="2013-07-24" version="1">MPELKGSKTEANLMTAFAGESQARNKYTYYASKAKKDGYVQIAAIFEETANNEKEHAKMWFKLLHGGIGDTVDNLKDAAAGENYEWTDMYAGFAKTAREEGFDHIADLFEGVAKIEKEHEERYLKLVKNLEEGLVFSRDGDVIWQCANCGHIVIGKKAPEVCPVCAHPQAYFQIKAENY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0P2</accession>
    <name>R6Y0P2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PP-loop family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01198</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29593">
        <property type="protein sequence ID" value="CDD29593"/>
        <property type="gene ID" value="BN815_01198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035107">
        <property type="entry name" value="tRNA_thiolation_TtcA_Ctu1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004976">
        <property type="entry name" value="ATPase_YdaO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ATP_bind_3" evidence="2">
        <location>
            <begin position="24"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="241" mass="26627" checksum="5D281CAAD08AAC4F" modified="2013-07-24" version="1">MDKLTGRVRAAVEKYQLIEEGDRIAVGVSGGKDSLFLLCALAELSQYYPKHFSVVAVTADPCFGGVPGDYSQIQGLCDALGVPYIIRKTYLGPLIFEERKEENPCSLCARMRRGILHNICVEEGIPKLALGHHFDDAVQTFFMNLFYGGKIGCFSPKTYLSRKKITVIRPLVFCEEREITGAARRLALPIVKSACPADGVTARKDTADLVKQLEKQFPHLRTKVLGAMQRANLDGWGDTTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1E0</accession>
    <name>R6Y1E0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphatidylglycerol lysyltransferase</fullName>
            <ecNumber evidence="6">2.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Lysylphosphatidylglycerol synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mprF</name>
        <name evidence="7" type="ORF">BN815_01286</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + L-lysyl-tRNA(Lys) = 1,2-diacyl-sn-glycero-3-phospho-1'-(3'-O-L-lysyl)-sn-glycerol + tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:10668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="ChEBI" id="CHEBI:75792"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="EC" id="2.3.2.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the LPG synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.3" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29888">
        <property type="protein sequence ID" value="CDD29888"/>
        <property type="gene ID" value="BN815_01286"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050071">
        <property type="term" value="F:lysyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022791">
        <property type="entry name" value="L-PG_synthase/AglD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03706">
        <property type="entry name" value="LPG_synthase_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00374">
        <property type="entry name" value="TIGR00374"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="51"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="319"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="367" mass="41170" checksum="23A8A4E1EDC4618B" modified="2013-07-24" version="1">MENMEKKDAGLPAGKKKRKIPWSMLYILATVVAVLLFGLFNQQFGNVFHTISNLTPGFLSLGVLISLVYFLFEGEIFRLLLRSQGYRISVVEGLKNALLGLYYSYITPSSTGGQPMQSAYLLRDNKIPAGISTAVLIVKFMCFQCAFVLVSVVSFIGMYGNLAANNPTIIPFIVLGLVINGCSILFFASLFYKPVLHLICRLAKWLVRKIKFLRKRAGLLESIDRFEADFSSYTDDFKGKQKSLVAGVLLSIPQFILQMSVIYFIFRAFGYHNVGYLEIVAVQSLLQVSVSFMPMPGASGAQEIGFSSFFRNYFVNDDLYAAVMVWRFFTYYLVVIAGAILVVADQVWYRKKKLKEALSTSEPLDNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y270</accession>
    <name>R6Y270_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AAA_15 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27910">
        <property type="protein sequence ID" value="CDD27910"/>
        <property type="gene ID" value="BN815_00055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd01026">
        <property type="entry name" value="TOPRIM_OLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041685">
        <property type="entry name" value="AAA_15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034139">
        <property type="entry name" value="TOPRIM_OLD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13175">
        <property type="entry name" value="AAA_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_15" evidence="1">
        <location>
            <begin position="1"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="662" mass="74872" checksum="6A8BCD24150C8AC5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2A3</accession>
    <name>R6Y2A3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase subfamily IA variant 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30188">
        <property type="protein sequence ID" value="CDD30188"/>
        <property type="gene ID" value="BN815_01431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.720">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044924">
        <property type="entry name" value="HAD-SF_hydro_IA_REG-2-like_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="26230" checksum="5EBA9554EF4F134A" modified="2013-07-24" version="1">MIQRVFFDLGLTLAESDVPQGYVEHLARLGHPVSLEEAQRAYHLANKFFMRERQGALGKGSKEVLRDFLARVCQELGIPQLGEDLFRLTLEDRRPAHWSAFPFSLEVLRGLRERGIATGLVSNWDTSCRNVLEQTGLAPYLDPIVVSSEVGVEKPDRRIFEKALELSGDSPEHCLYVGDNYYDDGVGASQVGMEFCILNPPGKLGMEELDLTWCVPDIRGVAGVIDALNARRQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y356</accession>
    <name>R6Y356_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CAAX protease self-immunity</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01664</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000245">
        <property type="protein sequence ID" value="CDD30443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30443">
        <property type="protein sequence ID" value="CDD30443"/>
        <property type="gene ID" value="BN815_01664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003675">
        <property type="entry name" value="Rce1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02517">
        <property type="entry name" value="Rce1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="290"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="366" mass="39527" checksum="A024711231B9AF64" modified="2013-07-24" version="1">MGPPPGYPPYPGMGQGYPAPYGAYPMPAQPGWYAAPVYAPPYVPGEKPLRDPRQKGATRTMNRMCLLLLAQFALSLFWQFPLQMLLALVGVDIFQNSLGYQWLSGVLVPLATALPFVAYLAFRKDDPADYLKFEKVGFSGGLLCVLGGLAVTLLGNYPATFVSNFFGSFGYESASSYVGGGESLQVVLLDIAITAVLVPFMEEFAFRGVVLSALRKYGIGFSIVASALIFGMAHMDFSTVVFAFVAGLVFGFLYAKTNNLWLPVIIHSLNNLIAVLGSHGEFLFGDMAYFVNNLLMLVPLGVGLVALVLLLVFKRGMFIGPRSPRYDGPAQPLGAGESAASIVRAPMFWVVVGLMALYTLSLFFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3W6</accession>
    <name>R6Y3W6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Scavenger mRNA decapping enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01880</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000300">
        <property type="protein sequence ID" value="CDD30673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30673">
        <property type="protein sequence ID" value="CDD30673"/>
        <property type="gene ID" value="BN815_01880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019808">
        <property type="entry name" value="Histidine_triad_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001310">
        <property type="entry name" value="Histidine_triad_HIT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23089">
        <property type="entry name" value="PTHR23089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00332">
        <property type="entry name" value="HISTRIAD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00892">
        <property type="entry name" value="HIT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="2">
        <location>
            <begin position="5"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="1">
        <location>
            <begin position="97"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12782" checksum="F6AC8C3A35F0F9F6" modified="2013-07-24" version="1">MNDCIFCKIAQGQIPSKIAYEDENVMAFYDQDPQAPVHVLVIPKEHIASAMEITPENSGLIAKVWEAIPKIAADLGLENGFRVVNNCGKDGMQTVQHLHFHLLGKRQMGWPPFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4N5</accession>
    <name>R6Y4N5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative efflux protein MATE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28830">
        <property type="protein sequence ID" value="CDD28830"/>
        <property type="gene ID" value="BN815_00972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="315"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="387"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="415"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="450" mass="48440" checksum="C1431B8C6D203C08" modified="2013-07-24" version="1">MDYKTLFSQTPPTRLFFKAAIPGSIGMLASALYQVADGIFISRILGDTAFAGFNLAMPLVIINFALADLIGLGSAVPISIKLGSKDEQEANNYFTCASIMVVLAGILSGAVLALGGRTFLSWMGAQGELLDQATQYLVTYALCSPVTTIVFAVDNYLRICGKIRRSMFLNIFMSVACMGFELLFMGVLKIGIRGAALGSSLGMALTAIAAFVPFFFGKMQLRFVRPRFHAKALREIVSCGLPSFLNNIAGRVTSIIMNVVLLALGGQNAVSVYGILMTMDGFVHPLLYGMCDSLQPAVGFNWGARNIKRVKAIELRCYTAAIILALATTGVLALFPRQIAGLFITGDSDPAYLEMAVHALVLFSLTYITRWFSFATQSFLSAIEKPVAASAISVCTALVFPVILIGVFWPLGLTGLWLNFAGTAVLAGILALILLLRQKELWNKDKKKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y526</accession>
    <name>R6Y526_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02162</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD31003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31003">
        <property type="protein sequence ID" value="CDD31003"/>
        <property type="gene ID" value="BN815_02162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011435">
        <property type="entry name" value="UmpAB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07556">
        <property type="entry name" value="DUF1538"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="292"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="374"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="397"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="461"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="512" mass="54300" checksum="38408CF6AD7EE225" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y619</accession>
    <name>R6Y619_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00319</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31388">
        <property type="protein sequence ID" value="CDD31388"/>
        <property type="gene ID" value="BN815_00319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="209" mass="22454" checksum="DE854E45E6C2682F" modified="2013-07-24" version="1">MSLLEFVNLTYTYDGQQPLLLGASGQLEQGKLYAILGPSGCGKTTLLSLLGGLDSPQGGHILFQGKDIAETGLGQHRRRHVAFIFQSYNLIDYLTPAENVALASNLPPLPLLERLGLTKEEARRSVLQLSGGQQQRVAIARALASEAPVILADEPTGSLDEDTAQGIASLLRESAHQMGKCVVVVTHSRELAREADVVFRLKRGTLVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6X1</accession>
    <name>R6Y6X1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Toxin-antitoxin system toxin component MazF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01211</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29620">
        <property type="protein sequence ID" value="CDD29620"/>
        <property type="gene ID" value="BN815_01211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="8142" checksum="32BD09C443DCE067" modified="2013-07-24" version="1">MTIVCPITNTNNRFPLHIPLDNRTQTTGVIMCEHIKALDLNARPHRVVERLPEDLLRKVIDVVFAEIEVNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y746</accession>
    <name>R6Y746_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00508</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. CpsB/CapC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27119">
        <property type="protein sequence ID" value="CDD27119"/>
        <property type="gene ID" value="BN815_00508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016667">
        <property type="entry name" value="Caps_polysacc_synth_CpsB/CapC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39181">
        <property type="entry name" value="PTHR39181"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19567">
        <property type="entry name" value="CpsB_CapC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="27235" checksum="7AEEBE174AB315CD" modified="2013-07-24" version="1">MIDIHTHVLPGLDDGSGSLEESLWLGHALARQGVKLFAATPHFYATQESPQDFLRRRERAERQLFLHWPQEFPPFLMGAEVRFFDGMSRTQELPLLTLEGTNLLLLEMPFSPWSSRMVEEVLEIQERRGLQVLLAHVERYLPYQEPKVWERLRQGKVWMQCNASFFLHWRTKPKALRMLRKGEIHMLGSDCHNKTTRPPRLGEAAEVIEKSLGQGTWRAFNRRALALLKSVSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y763</accession>
    <name>R6Y763_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrolase NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000172">
        <property type="protein sequence ID" value="CDD29720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29720">
        <property type="protein sequence ID" value="CDD29720"/>
        <property type="gene ID" value="BN815_01248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="38"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="180" mass="20159" checksum="D2D13614B5ABF536" modified="2013-07-24" version="1">MNEKILKDTTVFDGHLIRVHVDDVELDNGMVAKREIVSHPGGVSVAILTEKNELLFVKQFRCPYQEELLELPAGKLEPGEDPFEAMKREQLEETGTTGKNYISLGNLYPTPGYCGEIIRLWACRVDKETGELSLDPDEFLQTLRIPLDKAVEMVLHNEIPDSKTQVGILKTAALVEKGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y768</accession>
    <name>R6Y768_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000017">
        <property type="protein sequence ID" value="CDD27144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27144">
        <property type="protein sequence ID" value="CDD27144"/>
        <property type="gene ID" value="BN815_00518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="175" mass="20457" checksum="C9B78EFDC0BF1868" modified="2013-07-24" version="1">MPLFTTKPTDQLFERFMKHQPNFKPNAPEADRIQAELDAEKERKETHAMIYQDERHEHTFEKEVSMRPDSVSRALLAALYLLTADRNLWSQVRDHISLRRMYVEDMRPKNLTGTSYVYFAAAKDILSGTRNIQLMEIADPALLSMKSYMILCTALAIRAYGVERASRIQFEARWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y799</accession>
    <name>R6Y799_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01264</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29780">
        <property type="protein sequence ID" value="CDD29780"/>
        <property type="gene ID" value="BN815_01264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="433" mass="48019" checksum="A7E12596F44FFBD8" modified="2013-07-24" version="1">MKWLELLNMEYGECVVLGGGDRSLLMVDCGSVSQKLREGDVPMDAWLETIAARYEPAMERWFLLTHFHRDHLSGFQKLLESREGYFSRVFLPRAPVDSHGVPLLLEYALFAYLFAQPQSDAFQVNTWCVKAFRTLEQRLGQDRIFTLGAGDSFHFDGVEYQVLWPRVESYPFEPELAAAVEALNVLFASPFQPGCVKRFLEKKEEFLALYVKCGEAFAAPSRALPEKRRAYLEHLNRVLEDLESLREGLGALPQAHDVREALENPLNAGAYTNGVNGASVVFHNGRKGGPSEQDILMTGDATPETMVEIMDQLHDGYYILKAPHHGTASGYSNLFSDMSAAHILISNGEYHAGGAIAQEYIDREDSVRHCTSTGACKWFRASQGCCNRLAYCYDQQGGPGLVIKCPGAANAKNVGCAIRVVGPTGQRGCLCDM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Y7</accession>
    <name>R6Y7Y7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">UDP-N-acetylmuramate--L-alanine ligase</fullName>
            <ecNumber evidence="4 12">6.3.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">UDP-N-acetylmuramoyl-L-alanine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">murC</name>
        <name evidence="16" type="ORF">BN815_01341</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + L-alanine + UDP-N-acetyl-alpha-D-muramate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine</text>
            <dbReference type="Rhea" id="RHEA:23372"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.8" evidence="4 12"/>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30015">
        <property type="protein sequence ID" value="CDD30015"/>
        <property type="gene ID" value="BN815_01341"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008763">
        <property type="term" value="F:UDP-N-acetylmuramate-L-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00046">
        <property type="entry name" value="MurC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005758">
        <property type="entry name" value="UDP-N-AcMur_Ala_ligase_MurC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01082">
        <property type="entry name" value="murC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 12" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 12" id="KW-0132">Cell division</keyword>
    <keyword evidence="8 12" id="KW-0133">Cell shape</keyword>
    <keyword evidence="11 12" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 12" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="13">
        <location>
            <begin position="12"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="15">
        <location>
            <begin position="115"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="14">
        <location>
            <begin position="313"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="117"/>
            <end position="123"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD30015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="458" mass="50043" checksum="6CE24584CA0F0209" modified="2013-07-24" version="1">MDENILDRVKKLHFVGIGGSGMCPMAEILHHKGFQLTGSDINESDTLERIKGYGIPVAMGHKAENIGDTECVVYTAACKADNPELVAAREKGVPTLERSVMLGMLTEKFKRPVAVSGTHGKTTTTAMLTEVLIDGGLDPSAIIGGKLPMLGANSRVGRSETIVVEACEYVDTFLQLHPAVSVILNIDADHLDYFKTVDNIVKSFHQFGEQTSQLVVVNGDNAKAMESVRGLQAKIVTFGMKDTNDYYPTEMNEEDTACEDFTLTYHGEKLGRVNLSVPGEHNMMNAVAAAAAAHCLGVAPEVICSTLGKFTGVHRRFEVLGKFEGVTVADDFAHHPTELTAVLTSAMKMGYRQVWAVFQPHTYSRTYNLLEDFAQALSIPDHLVMTEILAVREENKWGIHTSDLAAKVPGSVWFDSFEKIADYVMELAQPGDLILTLGGGDIYKCANLIVEKYKARQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y806</accession>
    <name>R6Y806_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00628</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000040">
        <property type="protein sequence ID" value="CDD27439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27439">
        <property type="protein sequence ID" value="CDD27439"/>
        <property type="gene ID" value="BN815_00628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="153" mass="18003" checksum="62E1E80ADB9B9C68" modified="2013-07-24" version="1">MDTPEEARVEERSSHFTRELGRAVTFLSRSRKRFMNERLRDYGFSGAMYMILLHIERHPGTTQDSIANHMFIDKCNVARRTKKLEALGYLYRETNQNDRRQNNLYLTEKGRELVPIIRSYMGQWGREITAGLTDEERTTLIGLLTKMTGQDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y899</accession>
    <name>R6Y899_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01395</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30150">
        <property type="protein sequence ID" value="CDD30150"/>
        <property type="gene ID" value="BN815_01395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012878">
        <property type="entry name" value="Glyco_hydro_127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07944">
        <property type="entry name" value="Glyco_hydro_127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="333" mass="37552" checksum="F3CC0AB7380AFB44" modified="2013-07-24" version="1">MYSYEQLLSITGEAQWGDLAEALAFNALPATLSPDMWSHQYDQQTNQVCCTRLPEDHVVFATNPGDSHLFGLEPNFGCCTANFNQGWPKLALSTFMGWKEGLASVILAPSVVSCQIGEAHVTCRLETDYPFRDTLTYTVTTDRHARFSLGIRIPGAVTSAVVDGAQAQPGAFFTVERDWSGTQQVQVSFTMETKLERRPNDLYCVKRGPLLYAVAIQEEWTRLEYTQNGVERKYPYCDYEIRPLSPWNYAFADDSFTVEEQEGWDAPFSTERPPISLTGTFVQIDWGFDNGLCHEVPDSRVPLTPPQQVRLIPYGCTNLRMTEMPWIQAESPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8X2</accession>
    <name>R6Y8X2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00129</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30370">
        <property type="protein sequence ID" value="CDD30370"/>
        <property type="gene ID" value="BN815_00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="28"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="9577" checksum="27EB3DDD794257A2" modified="2013-07-24" version="1">MSYDRSRKMTLLCAAKVRSRICVCGKEQLEVAEWCLVSPRQVRNWIRKDTNISVSNLFNLADFLNCHPEDLVISHPMPKERE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Y5</accession>
    <name>R6Y8Y5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000061">
        <property type="protein sequence ID" value="CDD27754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27754">
        <property type="protein sequence ID" value="CDD27754"/>
        <property type="gene ID" value="BN815_00712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="9998" checksum="DF5E7BD411F6F104" modified="2013-07-24" version="1">MSSKMVELHDIDVPAFLKVLDSCEGEVYLMTRDGDRLNLKSKLCQLVGLTALIEGGKIAEAFVMCEKESDESKLFRFNLYKHPEDVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9G2</accession>
    <name>R6Y9G2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000071">
        <property type="protein sequence ID" value="CDD27934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27934">
        <property type="protein sequence ID" value="CDD27934"/>
        <property type="gene ID" value="BN815_00732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="170" mass="19253" checksum="F679B849141488EC" modified="2013-07-24" version="1">MRLIPLWEADEERAYDLQKSFAPNENGFVNGAYGLSRQAFSEFVQLRKRNSQGLDLPEGHVPDTVYVLVDDSEGYVGIVKLRHRLNHALRQGAGHIGYGIRKEYRGRGYATAALSLALDEARKIVPEDEIYLSVRKDNPASLKVQLRNGARVDHESGEEYFTRIPLSRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9X5</accession>
    <name>R6Y9X5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Uronate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00745</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glucuronate = D-fructuronate</text>
            <dbReference type="Rhea" id="RHEA:13049"/>
            <dbReference type="ChEBI" id="CHEBI:58720"/>
            <dbReference type="ChEBI" id="CHEBI:59863"/>
            <dbReference type="EC" id="5.3.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; pentose and glucuronate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the metallo-dependent hydrolases superfamily. Uronate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.12" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28049">
        <property type="protein sequence ID" value="CDD28049"/>
        <property type="gene ID" value="BN815_00745"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00246"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008880">
        <property type="term" value="F:glucuronate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006064">
        <property type="term" value="P:glucuronate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003766">
        <property type="entry name" value="Uronate_isomerase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02614">
        <property type="entry name" value="UxaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="18433" checksum="0E06E29428894D30" modified="2013-07-24" version="1">MFHKLGRDTGYDAVLQGTPSLEVAAFLDLLASQDALPRMVLYSLNPNDDEGLNSVIGCFQDGTPLGRIQQGSAWWFNDHKAGMVKQLTAFANGGLLGNFIGMLTDSRSFLSYPRHEYFRRILCELLGAWVENGEYPADWKALEKMVRGVCYNNAVEFFGFPLEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA10</accession>
    <name>R6YA10_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00758</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28089">
        <property type="protein sequence ID" value="CDD28089"/>
        <property type="gene ID" value="BN815_00758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003709">
        <property type="entry name" value="Pept_M15B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02557">
        <property type="entry name" value="VanY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="VanY" evidence="2">
        <location>
            <begin position="132"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="31966" checksum="D4D700FD9699F760" modified="2013-07-24" version="1">MALERRDHRVDIGPAGRNIFISRDKQLQSRQAKRIKVLMRLVMVLVGLVVAVGVGLFVALYMVPYFQAEISLDSSSSAQGGGLSSLSQVEMPTYDSMGLPVYDDDVALFVINQNNPQDASYVPNTVEAEGVQVEAHIASALQMLVEAAREDGLALTFSAGYVSYEEQERLFEEKVQQLQNEEGLTTVMARTQARLEVPMAGESDMQSGMCLRVEADPETFGDSRTCSWLRNNMGKYGFVFRYPADKEDYTGCTEDLTVIRYVGSGHATSMQQLSMCLEEYISYLSRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA11</accession>
    <name>R6YA11_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01954</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30750">
        <property type="protein sequence ID" value="CDD30750"/>
        <property type="gene ID" value="BN815_01954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019587">
        <property type="entry name" value="Polyketide_cyclase/dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10604">
        <property type="entry name" value="Polyketide_cyc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="134" mass="15324" checksum="7A0A927CB4A832F3" modified="2013-07-24" version="1">MVTSTLQTTLPYPPEQVWQVVTDLTDTAWRSDIARVERTGPGAFVEYTPAGVATRFTVTAQEPCRRWEFRLENSSLRGRWVGEFAPQGGGTQLHFTEEVQPKRWWMGPFVKGYLKGQQARYAGDLRRALETRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAX9</accession>
    <name>R6YAX9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">UDP-N-acetylmuramoylalanine--D-glutamate ligase</fullName>
            <ecNumber evidence="9">6.3.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">D-glutamic acid-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">murD</name>
        <name evidence="11" type="ORF">BN815_02189</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + D-glutamate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the MurCDEF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.9" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000362">
        <property type="protein sequence ID" value="CDD31035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31035">
        <property type="protein sequence ID" value="CDD31035"/>
        <property type="gene ID" value="BN815_02189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008764">
        <property type="term" value="F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00639">
        <property type="entry name" value="MurD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005762">
        <property type="entry name" value="MurD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01087">
        <property type="entry name" value="murD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="8 9" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="10">
        <location>
            <begin position="119"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="121"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="457" mass="50395" checksum="DD65E04AC2E9789C" modified="2013-07-24" version="1">MNKEQFFTSIQGKTVTFCGIGRSHMPLIRLFQEKGALVSARDKRSLEELGDNGKALQERGVQLILGENYLEDLREDIIFRTPGMKYHLPQLEAARKRGAAVTSEMEVFFQLCPCKIYAVTGSDGKTTTTSIIAELLKAQGKTVHLGGNIGKPLLPEIESIQPEDCAVVELSSFQLISMRESPDVAVVTNLSPNHLDVHKDMQEYIDAKKNILLHQGAFSRTVLNAGNEIAASFAPQVRGDCWMFRRGAPVERGVWCDGETIYVHGQALLPISQIRIPGWHNVENYMAAIAAVWGDVEPETIRRVAETFAGVEHRAEFVRELRGVKYYNDSIATSPTRVISGMLSLFPQKILLIAGGYDKHIPFEPLGPAVCEKVKTLILLGDTAQKIQDAVQAAPQYQEGCPEILRVDNMEQAVAAAAAHAQPGDIVSLSPACAAFDLYPNFEVRGRHYKDIVNGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBF9</accession>
    <name>R6YBF9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptide deformylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02404</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31260">
        <property type="protein sequence ID" value="CDD31260"/>
        <property type="gene ID" value="BN815_02404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9129" checksum="6A9824D584246D74" modified="2013-07-24" version="1">MAIRKIVRFGDSVLEKECRKVEKFDKKLHQLLDDMKETLADADGAGLAAPQVGILXXXPPPRWASCAPCAWWMWARAPSSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBM5</accession>
    <name>R6YBM5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0371 protein BN815_00265</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0371 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31330">
        <property type="protein sequence ID" value="CDD31330"/>
        <property type="gene ID" value="BN815_00265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01567">
        <property type="entry name" value="UPF0371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014999">
        <property type="entry name" value="UPF0371"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08903">
        <property type="entry name" value="DUF1846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033132">
        <property type="entry name" value="DUF1846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="494" mass="54241" checksum="7D1F06FD859073F8" modified="2013-07-24" version="1">MGNIGFDNEQYLRTQSEKIRERVQLFGGKLYMEFGGKLFDDYHASRVLPGFLPDSKVKMLLQMKDQAEIVIVISAGDIEKNKVRGDLGITYDVDVLRLIDAFRGIGLYVGSVVLTQYNAQPAAEAFQKRLESLGVKVFRHYTIPGYPSNIPLIVSDEGFGKNEYVETSRSLVVVTAPGPGSGKMATCLSQLYHEYKRGVKAGYAKFETFPIWNLPLNHPVNLAYEAATADLNDVNMIDPFHLEAYGETAVNYNRDVEVFPVLNAMLEKIMGQSPYKSPTDMGVNMAGNCIVDDKACCGAACQEIIRRYYDALCGQRQGTLTGDEVYKVELLMNKAGITPQDRPVIAPALKRAEETGLPAAAIQLPDGRIVTGKTSSLLGASSACLLNALKALGGISKDIHLISPIVIEPIQKLKTTHLGSVNPRLHTDEILIALSICAATNPTAELAMAQLKKLRGCEAHATVILSHVDEDTFRRLGVNLTCEPQYQSKKLYHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBM6</accession>
    <name>R6YBM6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ParB-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00913</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000099">
        <property type="protein sequence ID" value="CDD28664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28664">
        <property type="protein sequence ID" value="CDD28664"/>
        <property type="gene ID" value="BN815_00913"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="2">
        <location>
            <begin position="32"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="35412" checksum="D37DEDC5470B9E0E" modified="2013-07-24" version="1">MKSSAKKVELASVDDLFSTEESRADAQREKVLEIPLSELHPFKDHPFKVKDDEAMMETADSIRQYGVLVPAIARPDPGGGYELVAGHRRHRASELAGKDTMPVIVRDLDDDAATIIMVDSNLQRESLLPSERAFAYKMKLEAMKHQGERMDLTCSQVGNKSAGKKSSELLAEQVGQSKNQIFRYIRLTELIPKLLDLVDEKKIAFNPAYELSFLKKEEQLQLLDAIGSEQATPSLSQAQRLKKFSYEGHLSIDVMRAILGEEKKSDLDRLVFTTETLRKYFPKSYTPAKMQETIIGLLERWQRNRQQQQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBT4</accession>
    <name>R6YBT4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">L-serine ammonia-lyase</fullName>
            <ecNumber evidence="4">4.3.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_00316</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-serine = NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:19169"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="EC" id="4.3.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the iron-sulfur dependent L-serine dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.17" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31385">
        <property type="protein sequence ID" value="CDD31385"/>
        <property type="gene ID" value="BN815_00316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029009">
        <property type="entry name" value="ASB_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005130">
        <property type="entry name" value="Ser_deHydtase-like_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005131">
        <property type="entry name" value="Ser_deHydtase_bsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03313">
        <property type="entry name" value="SDH_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03315">
        <property type="entry name" value="SDH_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143548">
        <property type="entry name" value="SSF143548"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SDH_beta" evidence="11">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="SDH_alpha" evidence="10">
        <location>
            <begin position="154"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="44183" checksum="D5EB5A1D159FAF25" modified="2013-07-24" version="1">MESLRELYRIGRGPSSSHTMGPSHAATLFRRAFPQAERFQAVLYGSLAKTGKGHLTDVAIQDAFAPLPTEILWERETPEESLPHPNTMELLAFQGEEQLGRWRVFSVGGGKIEIEGQPSVAPQDVYPLSTFQEIKEYCQREGKFLWQYVEENEGPEIWDYLRDVWKQMKATVYAGLNTEGVLHGGLGVQRKAKYLVRQRHMDESPETRENRKVCAYAFAVSEENAGGGVVVTAPTCGASGVLPAVLVFKQEQLGFSDRDMLHALAAAGIVGNIIKTNASISGAECGCQAEIGSACSMAAAGLAELYHMDLDQIEYAAEVAMEHHLGLTCDPIGGLVQIPCIERNAVAAMRAINALSLANFLTYTRKISFDMVVKTMYETGRDLFSKYRETSEGGLAKMYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBU6</accession>
    <name>R6YBU6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4179 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00942</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28749">
        <property type="protein sequence ID" value="CDD28749"/>
        <property type="gene ID" value="BN815_00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025436">
        <property type="entry name" value="DUF4179"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13786">
        <property type="entry name" value="DUF4179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4179" evidence="2">
        <location>
            <begin position="46"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="533" mass="58325" checksum="47565D1A2959C07C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC95</accession>
    <name>R6YC95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00996</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28919">
        <property type="protein sequence ID" value="CDD28919"/>
        <property type="gene ID" value="BN815_00996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="689" mass="77462" checksum="C6E7C2DFB97FA3FE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCA5</accession>
    <name>R6YCA5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01004</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28929">
        <property type="protein sequence ID" value="CDD28929"/>
        <property type="gene ID" value="BN815_01004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033782">
        <property type="entry name" value="DUF5301"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17225">
        <property type="entry name" value="DUF5301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="13904" checksum="DAC13C2C3EF55566" modified="2013-07-24" version="1">MKKAALLLCTLLLAALAGCQLGGKAILLPKAGNITAIQVETLEGESLSLTQEEDIARLLEVLNTGWSIGRESVQDQPLVEPYGTIRLENRGGATVLYYYKEGDATLVEQPYTGIFRLEGSLESALPPQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCB4</accession>
    <name>R6YCB4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">Adenylate kinase</fullName>
            <shortName evidence="6">AK</shortName>
            <ecNumber evidence="6 8">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">adk</name>
        <name evidence="10" type="ORF">BN815_00386</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 8">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6 8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis. Some bacteria have evolved a zinc-coordinating structure that stabilizes the LID domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the adenylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="6 8"/>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31510">
        <property type="protein sequence ID" value="CDD31510"/>
        <property type="gene ID" value="BN815_00386"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:adenylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006259">
        <property type="entry name" value="Adenyl_kin_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007862">
        <property type="entry name" value="Adenylate_kinase_lid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="PTHR23359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05191">
        <property type="entry name" value="ADK_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01351">
        <property type="entry name" value="adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="4 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ADK_lid" evidence="9">
        <location>
            <begin position="123"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="region of interest" description="NMP" evidence="6">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="LID" evidence="6">
        <location>
            <begin position="122"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="57"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="85"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="132"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>structural</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF05191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23394" checksum="2354A9E940A69799" modified="2013-07-24" version="1">MKLILLGAPGAGKGTQAEKICQKNNIPTISTGNILREALKSGTEMGLKAKTYMESGQLVPDEILIGIIQDRLAQEDCKNGFILDGFPRTIPQAEALDKMGVEIDAVLDIEVADEDIITRMSGRRVCESCGSSYHTLYKQPKVEGKCDICGGTLVQRKDDHPDTVKERLDVYHTQTEPLKEYYSKQGKLLVVHGQEEVADTTRLVMEALEDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCR0</accession>
    <name>R6YCR0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00446</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31690">
        <property type="protein sequence ID" value="CDD31690"/>
        <property type="gene ID" value="BN815_00446"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="89"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="52"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="33232" checksum="D4379D5FA9EF6816" modified="2013-07-24" version="1">MVWVLAAGLALVALGLGIKVALLRHGIKALRQDLVERRGQDTNTLLSLPCRDRELRKLASALNDELRALRQERLRYQQGDKELKEAVVNISHDLRTPLTAISGYLQLLKSQDLPPDTRRYLEQIGGRAQAMKRLTEELFRYSVVVSEETLAREPVDLRRAVEEALLSFYGALEGRDIEPQVRLPEEKVERLLDPAALSRVLGNILTNALKYSAGDLEVTLEERGRLTFSNAAPGLDPVTAGRLFDRFYTVEAARNSTGLGLSIAKELTQRMGGSIGAALHSGTLTVWVEFPRQELDRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCX7</accession>
    <name>R6YCX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Agmatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00084</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29114">
        <property type="protein sequence ID" value="CDD29114"/>
        <property type="gene ID" value="BN815_00084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036979">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="283" mass="31277" checksum="17C29F364693B8CF" modified="2013-07-24" version="1">MLRKNIETFLSCGNEWQEAGTVLFGAPFDSTTSYRPGSRFGSSAIRRESYGIESYSPYQDKDLEDIAVFDSGDIELPLGDAALSLAQIEERAAAILEAGKRPFLLGGEHLVTLGAFRAAFAKYPDIHILHFDAHADLRDDYLGVQLSHACVLRRCWELVGDGKIYQFGIRSGDREEFRWGASHVNTHKFDLHGLEERLEQLGDTPVYFTLDLDVLDPSVFPGTGTPEPGGVSFEELRKAVTLVCQRANVVACDVNELSPPYDQSGVSTMVACKVVREMLLALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEJ2</accession>
    <name>R6YEJ2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO</fullName>
            <ecNumber evidence="10">2.1.1.74</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Folate-dependent tRNA (uracil-5-)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Folate-dependent tRNA(M-5-U54)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">trmFO</name>
        <name evidence="12" type="ORF">BN815_00481</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH + uridine(54) in tRNA = (6S)-5,6,7,8-tetrahydrofolate + 5-methyluridine(54) in tRNA + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:16873"/>
            <dbReference type="Rhea" id="RHEA-COMP:10167"/>
            <dbReference type="Rhea" id="RHEA-COMP:10193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74447"/>
            <dbReference type="EC" id="2.1.1.74"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH + uridine(54) in tRNA = (6S)-5,6,7,8-tetrahydrofolate + 5-methyluridine(54) in tRNA + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:62372"/>
            <dbReference type="Rhea" id="RHEA-COMP:10167"/>
            <dbReference type="Rhea" id="RHEA-COMP:10193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74447"/>
            <dbReference type="EC" id="2.1.1.74"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the MnmG family. TrmFO subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.74" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000003">
        <property type="protein sequence ID" value="CDD26986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26986">
        <property type="protein sequence ID" value="CDD26986"/>
        <property type="gene ID" value="BN815_00481"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030698">
        <property type="term" value="F:5,10-methylenetetrahydrofolate-dependent tRNA (m5U54) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047151">
        <property type="term" value="F:methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase (FADH2-oxidizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01037">
        <property type="entry name" value="TrmFO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002218">
        <property type="entry name" value="MnmG-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020595">
        <property type="entry name" value="MnmG-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040131">
        <property type="entry name" value="MnmG_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004417">
        <property type="entry name" value="TrmFO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806">
        <property type="entry name" value="PTHR11806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806:SF2">
        <property type="entry name" value="PTHR11806:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01134">
        <property type="entry name" value="GIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00137">
        <property type="entry name" value="gid_trmFO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01281">
        <property type="entry name" value="GIDA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="4 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10" id="KW-0521">NADP</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10 12" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="GIDA" evidence="11">
        <location>
            <begin position="9"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD26986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="425" mass="46721" checksum="0260C36114F530B3" modified="2013-07-24" version="1">MKPQKFSPAHHSQGFAELICSNSLKASRVDSAAGLLKEEMRRLGSLLMACAEKSAVPAGGALAVDREEFSRLATQAIEGEPRITVVREEVTDIPQGPVVVATGPLTSEGLSQKIRQLCGGSLSFFDAAAPIVTRESLDMEHCFAASRYGRGDEDGEEGDYLNCPMNKAEYDAFQEALVTAQRAPVHSFDVRDPKVYEGCMPIEVLASRGHDAIRFGPMKPVGLRDPRTGHRPWAVLQLRTENRERTLFNLVGFQTNLKFGEQRRVFGMIPALRHAEFVRYGVMHRNTFLNSPQLLQADYSFRGRPELFFAGQITGVEGYMESASSGLLAGLNLARRLSGQETLVLPETTMLGALARYVAGYQGKDFQPMGANFGVLPPLSEKIRDKRQRYGALAQRGLSHLAGYCREMGQPLEESAPGAEVEEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF07</accession>
    <name>R6YF07_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01313</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29934">
        <property type="protein sequence ID" value="CDD29934"/>
        <property type="gene ID" value="BN815_01313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="13499" checksum="A49FEBACE4EBCB2E" modified="2013-07-24" version="1">MKSLAELKAIRDKTRASVTLRENAEAGTRVMVGMATCGIAAGARPVLNAFVEEVAKRNLQDVMVTQTGCIGICQYEPVVEVVTPGHEKVTYVKMTPEKALRVVNDHLVNGNVVTEYTIGANAIGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF14</accession>
    <name>R6YF14_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00533</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000021">
        <property type="protein sequence ID" value="CDD27191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27191">
        <property type="protein sequence ID" value="CDD27191"/>
        <property type="gene ID" value="BN815_00533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="104"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="107"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="19233" checksum="655F3904009110B9" modified="2013-07-24" version="1">MQTEFLRCNSHKKTAQHSGYTHNALCCSVMLCGESKNSPHQVRKADHHGTGYKQAGQGCKQEQFEDTRLLPAQEVNTDGEVLSDDLPDAHSDFRLLIVQANEALQNGSEEKADHRSPEDRSKSKSSVNQTAQKRSDEPSNGLYLIYRRIAFHQIVSGEHLGDAGLYRGRLKGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF97</accession>
    <name>R6YF97_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00565</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000029">
        <property type="protein sequence ID" value="CDD27281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27281">
        <property type="protein sequence ID" value="CDD27281"/>
        <property type="gene ID" value="BN815_00565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="122"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="18950" checksum="32F8ABA9F8CD1A75" modified="2013-07-24" version="1">MDTQVTFGVLAGCVALAAVLVLLSLHILRREPKDLRERSKNGEILLLTFAQIMALYNAAPEKWEMQVDSPTYYPHGKERDGLLVFMLPKERKRYRKWFDWRLSHGEDAGQFQMTAKALLSMQEDLAGHLQRLQQSNEKALRESLEAAQRILDKQQQEGGRGNRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFK8</accession>
    <name>R6YFK8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01370</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000193">
        <property type="protein sequence ID" value="CDD30104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30104">
        <property type="protein sequence ID" value="CDD30104"/>
        <property type="gene ID" value="BN815_01370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437440" evidence="1">
        <location>
            <begin position="32"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11820" checksum="0771BA4828215B2E" modified="2013-07-24" version="1">MTFSTWHSKVTCCLGASKAVFSTASCIPARASMNSWLAARMPASTSKRSLRFSRTLSKNCRISSSRLSFSSLWPRVAVLSFFFRRLSSMRVGFTCKRSATGHHTFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFL8</accession>
    <name>R6YFL8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative spore maturation protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30119">
        <property type="protein sequence ID" value="CDD30119"/>
        <property type="gene ID" value="BN815_01377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="20612" checksum="99A9C2EBBCDD1FF8" modified="2013-07-24" version="1">MLNSIWFFMIALSVVSALATGRIGSLSTALLEGAQSAVELSLFLLGSMCAWLGFLQIAEESGLSRLLARALAPVIGRLFPEYREDTAILGKIALNLSANLLGLGNAATPLGLAAIQAMAERNPSRESPTRGMVLFVVMNTASLQLIPLNMAAMRQSAGSAQPFAILPAVWITSAASLAVCLAACKLLERSPLWQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFR5</accession>
    <name>R6YFR5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NOL1/NOP2/sun family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01419</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30174">
        <property type="protein sequence ID" value="CDD30174"/>
        <property type="gene ID" value="BN815_01419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018314">
        <property type="entry name" value="Fmu/NOL1/Nop2p_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031341">
        <property type="entry name" value="Methyltr_RsmF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027391">
        <property type="entry name" value="Nol1_Nop2_Fmu_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031340">
        <property type="entry name" value="RsmF_methylt_CI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17125">
        <property type="entry name" value="Methyltr_RsmF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13636">
        <property type="entry name" value="Methyltranf_PUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17126">
        <property type="entry name" value="RsmF_methylt_CI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01153">
        <property type="entry name" value="NOL1_NOP2_SUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="6">
        <location>
            <begin position="22"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="110"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="47982" checksum="E432D85CE24BCABE" modified="2013-07-24" version="1">MELPAAFLQAMERLLGPEYPVFLQSYQQPPRRGLRRNPLKCGQPQLEAALPFALEPTAFSPLSYAFAAGEEGVGRLPAHHAGLFYVQEPSACSAVTVLDPQPGEKVLDLCAAPGGKSTQIAGLLAGEGLLWSNEIVKSRAQALLSNVERLGVPNAVVSSCHPQRLCQSLQGFFDKVLVDAPCSGEGMFRRDPAAVAQWSPESPAACAQRQRAILDSAALAVREGGVLVYSTCTFSREENEDNVRWFLSAHPEFALLPIEAGFGRPGVGDLPVRRIYPMDGGEGHFVAKFQRVGENVDKVGPFTAYLSRREEGEFQGLFEELFTCHWPGSAARFGDRVVLLPQGLPELSGLGVLRAGVELCHQKGKRWEPSHAVFQAAHKEDCRQSLELPWDAPELLAFLRGEEIPCEGKGYTAVCAGGVPTGFGKASGGRLKNHYPKGLRLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFT9</accession>
    <name>R6YFT9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Arginine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Arginyl-tRNA synthetase</fullName>
            <shortName evidence="9">ArgRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argS</name>
        <name evidence="13" type="ORF">BN815_00629</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg)</text>
            <dbReference type="Rhea" id="RHEA:20301"/>
            <dbReference type="Rhea" id="RHEA-COMP:9658"/>
            <dbReference type="Rhea" id="RHEA-COMP:9673"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78513"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.19"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.19" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000041">
        <property type="protein sequence ID" value="CDD27446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27446">
        <property type="protein sequence ID" value="CDD27446"/>
        <property type="gene ID" value="BN815_00629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004814">
        <property type="term" value="F:arginine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006420">
        <property type="term" value="P:arginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00671">
        <property type="entry name" value="ArgRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00123">
        <property type="entry name" value="Arg_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001278">
        <property type="entry name" value="Arg-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005148">
        <property type="entry name" value="Arg-tRNA-synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036695">
        <property type="entry name" value="Arg-tRNA-synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035684">
        <property type="entry name" value="ArgRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008909">
        <property type="entry name" value="DALR_anticod-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11956">
        <property type="entry name" value="PTHR11956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03485">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05746">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00750">
        <property type="entry name" value="tRNA-synt_1d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01038">
        <property type="entry name" value="TRNASYNTHARG"/>
    </dbReference>
    <dbReference type="SMART" id="SM01016">
        <property type="entry name" value="Arg_tRNA_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00836">
        <property type="entry name" value="DALR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55190">
        <property type="entry name" value="SSF55190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00456">
        <property type="entry name" value="argS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arg_tRNA_synt_N" evidence="12">
        <location>
            <begin position="10"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="DALR_1" evidence="11">
        <location>
            <begin position="443"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="9">
        <location>
            <begin position="136"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD27446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="563" mass="61622" checksum="2D41960CDC4B79EA" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFU1</accession>
    <name>R6YFU1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Peptidase M50 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01447</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000207">
        <property type="protein sequence ID" value="CDD30204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30204">
        <property type="protein sequence ID" value="CDD30204"/>
        <property type="gene ID" value="BN815_01447"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004387">
        <property type="entry name" value="Pept_M50_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42837">
        <property type="entry name" value="PTHR42837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="279"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="330"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="108"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="357" mass="38427" checksum="B20AB3793DD76580" modified="2013-07-24" version="1">MQILTAALLILIGVLFFGFIIFFHELGHFLLAKASGIRVNEFALGMGPKLIGFQKGETQYSLRLLPIGGYCAMEGEDEDEDSGDPRAFGNKPVWKRFLVVAAGGIFNIVLGFFLMMIVLGQQDVFATTQIASFTEDSALQAAGAQVGDTIVEVDGYSIYTDRDLSFSLALADPDAVSMVVNRDGQRVDLGTFALHSQTLEDGSSMVSLDFYVEPEAVTFLSLVRRSATDTLSMARMVVETLKGLFTGRFGLNDVAGPIGTAQAIGQAASAGLAEGFGQAVLNILLMIVMFTVNLGIVNLLPLPALDGGRLLFLLWEGVTRHPVPAKYEGYVHAVGFVLFIGLTVVIAFHDIFRIVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFV5</accession>
    <name>R6YFV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">tRNA nucleotidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01462</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30219">
        <property type="protein sequence ID" value="CDD30219"/>
        <property type="gene ID" value="BN815_01462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031123">
        <property type="term" value="P:RNA 3'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05398">
        <property type="entry name" value="NT_ClassII-CCAase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032810">
        <property type="entry name" value="CCA-adding_enz_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002646">
        <property type="entry name" value="PolA_pol_head_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032828">
        <property type="entry name" value="PolyA_RNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01743">
        <property type="entry name" value="PolyA_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12627">
        <property type="entry name" value="PolyA_pol_RNAbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13735">
        <property type="entry name" value="tRNA_NucTran2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 4 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PolyA_pol" evidence="5">
        <location>
            <begin position="28"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="PolyA_pol_RNAbd" evidence="6">
        <location>
            <begin position="177"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA_NucTran2_2" evidence="7">
        <location>
            <begin position="304"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="452" mass="49787" checksum="5F62502DC14CEB5E" modified="2013-07-24" version="1">MNQGLTIVPPPVVGEALRRLEARGFQAWCVGGCVRDSLLGKAPFDWDIATSALPQETKACFAGERLVEAGAAHGTIAWVPSGGHPIEITTFRSDGAYTDGRHPDSVAFSRRLEDDLSRRDFTVNAMAWHPQRGLVDLFHGQEDLSAGLLRCVGEPARRFSEDALRILRCLRFSSQLGFAIHPDTARALWEKRELLLALSHERVREELTKLLCGQGAAAVLRQYAAVVFTVLPELAPMKGCAQETPYHCFDVWEHTLHAVDYAPQQGDLRWAALLHDAGKPGRKTRSADGVAHFYGHPPESGRIARQLLTRLRFSNKERDWIAALVDHHEDAMPMGEAHLKGLLGRYGEQFVFTLFQLQEADMSAKAPGVFARRLPDLEESRALARAILERGDCLTLGDMALTGEDLKALGVAPGPEMGKLLRRLLEAVQRGEAANTPAALGELAKRLLKRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG14</accession>
    <name>R6YG14_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01523</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000216">
        <property type="protein sequence ID" value="CDD30289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30289">
        <property type="protein sequence ID" value="CDD30289"/>
        <property type="gene ID" value="BN815_01523"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="8983" checksum="0D423711B9A239BB" modified="2013-07-24" version="1">MSYYTPKASASQGSAAQPAGDGDGPYRVAVYDGKIGVFRQGEAEPFLTADVEVYLLPQEDIALLRAGLEADTLAEVKAILEDYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH44</accession>
    <name>R6YH44_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phenylacetate-coenzyme A ligase</fullName>
            <ecNumber evidence="1">6.2.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phenylacetyl-CoA ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01894</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-phenylacetate + ATP + CoA = AMP + diphosphate + phenylacetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:20956"/>
            <dbReference type="ChEBI" id="CHEBI:18401"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57390"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aromatic compound metabolism; phenylacetate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the phenylacetyl-CoA ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.30" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000307">
        <property type="protein sequence ID" value="CDD30689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30689">
        <property type="protein sequence ID" value="CDD30689"/>
        <property type="gene ID" value="BN815_01894"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00930"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047475">
        <property type="term" value="F:phenylacetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05913">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028154">
        <property type="entry name" value="AMP-dep_Lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011880">
        <property type="entry name" value="PA_CoA_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14535">
        <property type="entry name" value="AMP-binding_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006444">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="82"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C_2" evidence="3">
        <location>
            <begin position="339"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="440" mass="49220" checksum="DBC3297ADA8FC43A" modified="2013-07-24" version="1">MEPRFFQKDIETMKRADIEALQLRRLKWMVDYCYNNVPFYHERLGQAGVTSGDKIKTLSDIQYIPFTTKDDIRDNYPFGMLAVPMKDIVRIHASSGTTGKPTVGAYTKEDIENWSDFVARIVTASGVTSDDIIQISFGYGLFTGALGLHFGLEKVGATVIPASSGNSEKQLMMLRDFGVTGLVATPSYALYLGELVRESPYPKEAYASLKYGILGSEGCTEEMRQRIEENLGVTVTDNYGMTELTGPGVSGECHLRCGLHFAEDAFLPEIIDQDTLEQKPAGEVGELVVTTLTRKGMPVLRYRTKDITRLHYEPCACGRTHVRMDKVMGRTDDMLIIKGVNVFPSQIESVLVGMENVGPHYQLVVRKRNYLDTLEVKVELVDASLLESFGELQALQKKIHDRLKSVLGLETKVTLVSPKSLERFQGKAKRVLDLRNQPEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH76</accession>
    <name>R6YH76_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01934</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30729">
        <property type="protein sequence ID" value="CDD30729"/>
        <property type="gene ID" value="BN815_01934"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425513" evidence="2">
        <location>
            <begin position="24"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="320"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="430" mass="48570" checksum="9B63DEEF40DFAB1C" modified="2013-07-24" version="1">MKHRWTAALLALALVLALPFSAAAETFSTEDFTMEIPEGTYVFTPTTSTEDPNWAMAGVANPESELSTLAEMNGVAELVTEDGETTILVQQQESDQTQAYFNLRYLTEEQQADFLDAIMQSQTDEITVDKYYLDVDGQPFYRIRIDGTYQETGYHELIYGTIVNGFTLAFNIYGGEESVTQEQEDLLLGIVESVQFSEILPKPETTVDTSDIVTTISLLVLLVLVILIPAVYFPIKSKRDKKLKARLADQLTAYHKEHGDNETILGDMLFANSTDCTKEAIHTFALYQSYIKNVGSLVIGAFLCLATLICSFALDADWWIKLLAVGIVVYYGYKIFNMPHTLEKVQRKVFDRGVSSTAHYAFYDEAFRVSGVQSASMFPYFQITDVRRHSHYLYLYYGPDNAYLVDQFGFSVGEWEDFVKFISQKTGKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI73</accession>
    <name>R6YI73_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucosamine-6-phosphate deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02247</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31094">
        <property type="protein sequence ID" value="CDD31094"/>
        <property type="gene ID" value="BN815_02247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004342">
        <property type="term" value="F:glucosamine-6-phosphate deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006044">
        <property type="term" value="P:N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01399">
        <property type="entry name" value="GlcN6P_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006148">
        <property type="entry name" value="Glc/Gal-6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004547">
        <property type="entry name" value="Glucosamine6P_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11280">
        <property type="entry name" value="PTHR11280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01182">
        <property type="entry name" value="Glucosamine_iso"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00502">
        <property type="entry name" value="nagB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glucosamine_iso" evidence="2">
        <location>
            <begin position="27"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="25620" checksum="519F13C9103678D2" modified="2013-07-24" version="1">MRILKAKNYEEMSALAAGVIGAQVLLQPRCVLGLATGSSPIGTYEKLVEAHRAGRLDFSQVRTVNLDEYCGLSGDNPQSYRYFMEKHLFSQVNLPQGSTHLPNGAAPDMEAEARRYEALVESLGYADLQLLGIGHNGHIGFNEPCESFPAAVHPVELTESTIQANSRLFDRVEDVPTRAITMGIGTILKARRILLIAGADKREIVEKALTGPITPWVPASVLQLHRDVTVITCGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIC9</accession>
    <name>R6YIC9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="10">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_02298</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 10">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31154">
        <property type="protein sequence ID" value="CDD31154"/>
        <property type="gene ID" value="BN815_02298"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004620">
        <property type="entry name" value="MTHF_reductase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00676">
        <property type="entry name" value="fadh2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="6 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="287" mass="32111" checksum="745CBAD7FEF9153A" modified="2013-07-24" version="1">MKIKDLLQQSDRKVVFSCEIFPPKKDVEFSGIFETVDAIHQLGADFISVTYGAAGSTSKKTVEVASYIQDTHHIPALAHLTCCSSTREEIHQRLEEMKARGIENILALRGDRPKEFVPGPYTYAIQLIQDIKAQGDFCVGGACYPEGHVECPHKEDDIYYLKEKVEAGCDFLTTQMFFDNNVYYNFLYRVLAVGIKVPVIPGIMPVINAKQVKRSAELSGAMMPPRFLAIADKFADDPLAMEQTGIAYATDQIIDLVANGVRHIHLYTMNRPKTAAKILENLSHILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIE4</accession>
    <name>R6YIE4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transposase IS116/IS110/IS902 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02313</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31169">
        <property type="protein sequence ID" value="CDD31169"/>
        <property type="gene ID" value="BN815_02313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003346">
        <property type="entry name" value="Transposase_20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002525">
        <property type="entry name" value="Transposase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01548">
        <property type="entry name" value="DEDD_Tnp_IS110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02371">
        <property type="entry name" value="Transposase_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425496" evidence="1">
        <location>
            <begin position="25"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="DEDD_Tnp_IS110" evidence="2">
        <location>
            <begin position="10"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="414" mass="46439" checksum="A9C078FDEE4904C6" modified="2013-07-24" version="1">MLKIVYRICCGMDVHKSFVVACIASTNDQGVTTYKSKRFSTFTGDLRRCAAWLSENNCKDVCMESTGKYWIPIYNILEPTCNIVLAHPKYVKAIRGKKTDKRDAKWIADIFKHDLVAGSFIPPADIRQLRDLVRYRCKLTNFTTGEKNRAQNCLTVSNFKLDDVFSDVFGKAASAITTRILENPTAKITDVSGFRTKGMKASNEQVLAAVDGEMCEEQAEKLRIIRSHMDSLELCKLNLESLILSTAEKYLPQLNLVMTAPGIQSFAAIGIISEIGVDMSVFPTSKHLCSWAGLTPQNNESAGKKKTTRISRAGAYIKPLLVQCALCAIRAKRFPEVRSRYLALKKRRGHKKAIIAIARMLLTAIYNMLKKNEPYNPELYRKGDRPPAHREVSVEEAIFILQRQGYLVTAPTTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIJ4</accession>
    <name>R6YIJ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zn_dep_PLPC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02368</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31224">
        <property type="protein sequence ID" value="CDD31224"/>
        <property type="gene ID" value="BN815_02368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029002">
        <property type="entry name" value="PLPC/GPLD1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00882">
        <property type="entry name" value="Zn_dep_PLPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zn_dep_PLPC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="32248" checksum="71BDE3B0A8E60587" modified="2013-07-24" version="1">MPACLTHYYFAQNVRENLPDASSLDACAYAWGAQGPDFFFCHRFLPFWRGRSLQEYGGRLHDEMPSKVLGAMREFLKAHPDPVYRSYVWGFVCHYSLDCTAHPYINWLAQELVRQRPWETPSTMHGEVEAALDAIVLRYETGKLPSEVPLKTMFPKNHGVEGKIARLYRQVLFTLYGEDVPEELLLQAMDDAHTIFSLVTDRTGLKKKLVARLEKGRPCVISSHMVPLTEDDQVDFANVQNAPWGDGSSSQSFFELYGEAQGVAGKILSGFFQGDLSALTGEKPFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIQ6</accession>
    <name>R6YIQ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphate/sulphate permeases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00232</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31294">
        <property type="protein sequence ID" value="CDD31294"/>
        <property type="gene ID" value="BN815_00232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001204">
        <property type="entry name" value="Phos_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101">
        <property type="entry name" value="PTHR11101"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01384">
        <property type="entry name" value="PHO4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="151"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="226"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="274"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="325"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="36959" checksum="68700F0BC5FD77FB" modified="2013-07-24" version="1">MDVSFSYFLDAMSASPVLLITVLLTLGVIFVNGWTDAPNAIATCITTRCMKPRPAIMLSAVFNFLGVLVMTHFNSSVASTISNMVDFGGDTREALIALCAALFSIVVYSVAASMFGIPTSESHSLIAGLSGAAIAIQNGVGGINMSEWVKVLYGLVASLALGFCIGWVVCKGLTILCRKMDRRRTNQFFTGAEIFGAAAMSFMHGAQDGQKFIGVLFLGVAFSNGMSSVSGVLIPVWLMVLCSAVMGIGTSVGGEKIIKAVGMDMVKLEKYQGFSADLSAALCLLLSSLFGIPVSTTHTKTSAIMGVGAVKRLSAINFGVVKDMVLTWVFTFPGCGLISFVMAKLFMLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIS5</accession>
    <name>R6YIS5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00254</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000398">
        <property type="protein sequence ID" value="CDD31319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31319">
        <property type="protein sequence ID" value="CDD31319"/>
        <property type="gene ID" value="BN815_00254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="75"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="143"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="281"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="36"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="364"/>
            <end position="599"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="398"/>
            <end position="405"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="612" mass="67679" checksum="7508EC444D134000" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ92</accession>
    <name>R6YJ92_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Alpha-L-fucosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00893</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000097">
        <property type="protein sequence ID" value="CDD28606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28606">
        <property type="protein sequence ID" value="CDD28606"/>
        <property type="gene ID" value="BN815_00893"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004560">
        <property type="term" value="F:alpha-L-fucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016286">
        <property type="entry name" value="FUC_metazoa-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000933">
        <property type="entry name" value="Glyco_hydro_29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10030">
        <property type="entry name" value="PTHR10030"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01120">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001092">
        <property type="entry name" value="Alpha-L-fucosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00741">
        <property type="entry name" value="GLHYDRLASE29"/>
    </dbReference>
    <dbReference type="SMART" id="SM00812">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="site" description="May be important for catalysis" evidence="5">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001092-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="439" mass="50786" checksum="85EF6F6F55F531BA" modified="2013-07-24" version="1">MYKFDRQEYDQRMAWYTDARFGMFIHWGLYAIPARGEWVRSVEEMPKEDYMPFFHQFNPVDFDPKRWARAAKEAGMKYVVLTAKHHDGFCLFDSQYTDFKSTNTPYGRDIVKEFVEAVRAEGLKVGLYFTLLDWYHDDYPHYGDKNHPMRNNPAYSNEKRDFSRYVEYMHNQVREICTNYGKLDILWFDFSYENENYVMRGETWGATELVNMVRQLQPGIIIDNRLEVSGEGFGSLWECDPTPYHGDFVSPEQIIPPNGIQDKQGRDMVWEACVTMNNNWGYCANDHYFKPAPMLIKKLVECVSKGGNLLLNVGPDARGNIPPQSLEILRQIGAWMKDNSQSIYGCGKAGLEKPDNGRITRRGNKLYYHLFENTIGPMPLPGVKAEEVEYVRYLATGAEVPISNSWTHSSYPDIVFADLGPDPILPDPVDTVLEVTLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJE1</accession>
    <name>R6YJE1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00397</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31524">
        <property type="protein sequence ID" value="CDD31524"/>
        <property type="gene ID" value="BN815_00397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="35"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="506" mass="55693" checksum="C37AE2C54253B25E" modified="2013-07-24" version="1">MKLQHVTPESVGVTSQAVLDLLDEFYRQGVEMHGLMLLRHGQVYAEGHWAPYNAQTPHILFSFSKSLTSTAIGFAVQEGILSLEDKLVDLFPDKVPVNPSENLQACCVRDLLMMACGHAKEIDWVASSSDWVSQFLEDPFVYQPGTHFLYNTAGTNMLSAIITRKTGLTLTQFLQPRLFDPLEMGQVFCQPLADGTEMGGAGMYLTLEAMARFTQFVANKGHWEGKQLLNAAWFEEATAKHIENLGPGWDGDPDWHAGYCYQFWRCDKPGIFRGDGAYGQYGIVLEPQDAVVVIQGCTVQLQKVLNAVWDKLLPALGQEPLPQDSHGFHRLQKRPGRLELNPMLGTRNPGAEASLDGAVYLPDAPTPGLLDLVDGGGHYVPAGHTLESLAFSFQGGKATLVFHQDNGSLELPVGLEGHFLSAPLEGTVLGANGRWRNRNTLEVEVRNTRMVSGQRMLFQFAGDKLTVSGDITLPDNGGLAGKCLEPVTFTLREGEVSTKTKMYWEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJY1</accession>
    <name>R6YJY1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00987</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000107">
        <property type="protein sequence ID" value="CDD28851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28851">
        <property type="protein sequence ID" value="CDD28851"/>
        <property type="gene ID" value="BN815_00987"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15863" checksum="1FF1DEB753F046D0" modified="2013-07-24" version="1">MIQEDTVKLLRECNAGIKMGVSSLDEVLPKVQSASLRNSLEKCRQAHGKLGDETHALLARYGDAGKEPSPVAKGMSWMKTNVKLALEESDETVADLITEGCNMGVKSLSRYLNQYEAAEEQAKDIAKRLIHLESGLAQEMQPYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK01</accession>
    <name>R6YK01_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Penicillin-binding protein transpeptidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00458</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000447">
        <property type="protein sequence ID" value="CDD31749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31749">
        <property type="protein sequence ID" value="CDD31749"/>
        <property type="gene ID" value="BN815_00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="2">
        <location>
            <begin position="150"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="454" mass="48271" checksum="E161488EE3F8D53E" modified="2013-07-24" version="1">MRTTGFRSMVLYILLAAFLGGLGYLLYQFVVNGSQWAMQPYNGHVYSENSTVKLGDITDRDGNLLATTEDGARLYSQDETVRRSLLHTVGDPYGYISTSVQYTMRAQLSGYNIITGLNDTIFNRMGSDIALTIDQDACVAAYNALGGKNGAVIVYNYETGEILAKVSTPTFDPNAVPEDLETNEAYKGVYLDNTLSGSFTPGSIFKIVTAAAAMERYPDSWSSITYNCQGAVELAGSDITCLNGHAHGSQDMSAALGNSCNVYFAQLANDLGAEALQQKAEEMGFNTQIDFGSIPIAQSTIDLADTNANQLGWAGVGQYTVLTNPYHMMVLMGAIANGGTYVEPKLTQDSGLLEGLSSGDRTLVTSTEAQNLKTLLRTNVESYYGDWLFPAGMNVCAKTGTGEVGEGKGPNCWMVGFCDSTVTPYAFAVVVEDGAGGIETAGSVASAVLTALAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLK1</accession>
    <name>R6YLK1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01160</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000149">
        <property type="protein sequence ID" value="CDD29451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29451">
        <property type="protein sequence ID" value="CDD29451"/>
        <property type="gene ID" value="BN815_01160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="7259" checksum="C61E6028A72E2FAE" modified="2013-07-24" version="1">MREYCKYRSRWGGTSCKFGHLRLACQMGSAVWTPMLFANMFLARMMPWRLSLSPATAMGTSLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YME7</accession>
    <name>R6YME7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01267</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 8">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000175">
        <property type="protein sequence ID" value="CDD29796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29796">
        <property type="protein sequence ID" value="CDD29796"/>
        <property type="gene ID" value="BN815_01267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004352">
        <property type="term" value="F:glutamate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05313">
        <property type="entry name" value="NAD_bind_2_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033524">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00074">
        <property type="entry name" value="GLFV_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 4 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="9">
        <location>
            <begin position="201"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="375"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="7">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="48078" checksum="A8E205699EF2C3EE" modified="2013-07-24" version="1">MSYVSEQLELLKKKNPGEPEFIQAATEVLTSLEPVIQANPQYEAAGILERIVEPERQIMFRVPWVDDNGKVQVNRGFRVQFNSAIGPYKGGLRLHPSVNLGIIKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDREVMAFCQSFMTELYRHIGPDTDVPAGDIGTGAREIGYMYGQYKRIRNAFEGVLTGKGLTYGGSLARTEATGYGLLYFTAAMLKKNGYDMAGKTVVISGAGNVAIYACQKAQEMGAKVVTMSDSTGWVYDAEGIDLAAIKEIKEVKRARLTEYKNYRPNSEYHEGRGVWSVKCDIALPCATQNELLEDDARQLVANGCIAVAEGANMPTTIEATKILQEGGVLFAPGKAANAGGVATSALEMTQNSERLSWTFEEVDQKLKGIMENIFKAADEAAEKYGHPKNYVMGANIAGFIKVADAMLAQGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YN73</accession>
    <name>R6YN73_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30016">
        <property type="protein sequence ID" value="CDD30016"/>
        <property type="gene ID" value="BN815_01342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="16283" checksum="F034538F63BBC7A6" modified="2013-07-24" version="1">MKKFLQSLPQVLVNLCVSYTCAVLLYTLLDAQQATMRRAWLYEILAICAAATVLQYVFFSGKAVKRLSYLARMAWFAAAMLAVVCGAAVVFRWFPLEHLGSWLWLVGIFLVGFAAIALVFEGWFRLKRRVYDDALGRYKQGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP51</accession>
    <name>R6YP51_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glycerol-3-phosphate acyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Acyl-PO4 G3P acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Acyl-phosphate--glycerol-3-phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">G3P acyltransferase</fullName>
            <shortName evidence="10">GPAT</shortName>
            <ecNumber evidence="10">2.3.1.275</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Lysophosphatidic acid synthase</fullName>
            <shortName evidence="10">LPA synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">plsY</name>
        <name evidence="11" type="ORF">BN815_01602</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>an acyl phosphate + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:34075"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="2.3.1.275"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably interacts with PlsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the PlsY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.275" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30381">
        <property type="protein sequence ID" value="CDD30381"/>
        <property type="gene ID" value="BN815_01602"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043772">
        <property type="term" value="F:acyl-phosphate glycerol-3-phosphate acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01043">
        <property type="entry name" value="PlsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003811">
        <property type="entry name" value="G3P_acylTferase_PlsY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30309">
        <property type="entry name" value="PTHR30309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02660">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01207">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00023">
        <property type="entry name" value="TIGR00023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="59"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="190"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="25208" checksum="EBF9BEFBDB8EC53A" modified="2013-07-24" version="1">MGQEVLALVFTAVAGYLLGSINWSIILTWFFKNKEDIREYGSGNAGMTNVLRSVGKLPAVLTFVGDFLKCVVALLLSQAFVALLAPESVEFYDVARYVAGVACVLGHIFPIYYGFRGGKGVVTSAAMIALTDWRVFLLVLLTFAIVFAIKRIVSLASVVCAALYPVYTFLFLFLVEFEGSPLPNHGTHSMAYLLFATAASLFIGLTVIVKHKANIGRLLRGEEKPITLGKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP90</accession>
    <name>R6YP90_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01632</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30411">
        <property type="protein sequence ID" value="CDD30411"/>
        <property type="gene ID" value="BN815_01632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="20054" checksum="A72DBFCBF0B91BAA" modified="2013-07-24" version="1">MALKERVQKRIDGMKVEGGWRMKLAVYGGAVLMVGGILLVMYLLLGGIGSTPQVGTVTVRSSSGEVTPLSNQIYTTTRGDRTESRRLVPGEVGDSAPTVVFDHATSILPQGGSDNGDFAFTIYDEAGRVYTETADYFQCPQEPGTYLVCEEFYWGTQRENIGMEYYFWIEVSEEYLASEGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPE1</accession>
    <name>R6YPE1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01668</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30451">
        <property type="protein sequence ID" value="CDD30451"/>
        <property type="gene ID" value="BN815_01668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="53"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="242"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="324"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="395"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="431"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="461" mass="49565" checksum="06BFC27E29BA259B" modified="2013-07-24" version="1">MSQSQTTSQENALATAPIGKLLFSLAVPAITAQVVNMLYNIVDRIYIGHIPEIGTAALTGVGITFPIITLISAFSSLIAMGGAPRASIAMGAHHKERAEEIMGNCFTALLALSVALTAVFQIFQEPILWAFGASENTIGYAMDYMGIYVWGTVFVQISLGMNMFITSQGFAKTSMLTVIIGAALNILLDPVFIFVFDMGVRGAAIATVFSQAVSAVWVLLFLCGKRTTLKIRPRCMAVRWKVLLPVLGLGVSPFIMQSTESLLSVVLNTSLLKYGGDTAVGAYTVIASIMQVVNLPLQGLTQGAQPITSYNYGARNMARVRKSVRLLLTCTLTYSCLFWAAIMLIPQVFVGIFTSDPELMDTAVWAARIFLFGVFSFGAQSGFQQSFLALGQAKVSLLLALLRKIVLLIPLIYILPLFFGDKLFGVFVAEPIADILAAATTTVCFLVFAKKNLGNKPGASN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPQ4</accession>
    <name>R6YPQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01749</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30536">
        <property type="protein sequence ID" value="CDD30536"/>
        <property type="gene ID" value="BN815_01749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00287">
        <property type="entry name" value="SH3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51781">
        <property type="entry name" value="SH3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425740" evidence="1">
        <location>
            <begin position="40"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="domain" description="SH3b" evidence="3">
        <location>
            <begin position="283"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="428"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="491"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="549"/>
            <end position="606"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="606" mass="64443" checksum="82C1CF21EF02031D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR82</accession>
    <name>R6YR82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31046">
        <property type="protein sequence ID" value="CDD31046"/>
        <property type="gene ID" value="BN815_02200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425791" evidence="1">
        <location>
            <begin position="21"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17110" checksum="6D436DA5A1E794F8" modified="2013-07-24" version="1">MKKILCLCFILCLSLSGCQASRVPGLDWDAEEMVELQVFTGGVPAAAQRKITRDTEDICRVAQALFSLEAARDAVNEDVPCGGIGTYFVFRRADGSQEVVLLGSGRDLLTTGEGFYKLRQKFPLDPDALWNSLEGEAEWVGEDGLPEIGSFPPPDQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR90</accession>
    <name>R6YR90_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Heme chaperone HemW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_02214</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000369">
        <property type="protein sequence ID" value="CDD31061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31061">
        <property type="protein sequence ID" value="CDD31061"/>
        <property type="gene ID" value="BN815_02214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004559">
        <property type="entry name" value="HemW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00562">
        <property type="entry name" value="HemN-like__clustered_with_heat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00539">
        <property type="entry name" value="hemN_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="8 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 9" id="KW-0349">Heme</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="10">
        <location>
            <begin position="1"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="365" mass="39946" checksum="BCC8F6B22C70A6FA" modified="2013-07-24" version="1">MLGFYIHVPFCHGKCPYCDFYSRPDSPRKMDAYVSAVTAALAPWRERLAGRELATVYFGGGTPSLLGAERLGLILQAVRQGFSLAPGAEITLEANPTSVDRAFFQEVRQAGFNRLSMGLQSANEEELRFLGRAHSPQQAAQAVENARAAGFSNISLDLMLGLPGGSREKLGRSIAFAASLGVEHISSYILKVEPGTPFAARGVQVPDEDDTAEQYLFAVEELARLGYGQYEISNFARPGKESRHNLLYWRGEEYLGFGPGAHSFFGGRRFYYPRDLEGFLQGNSPVEDGTGGDFGEFAMLNLRLTRGLRRGDCLARFGPEGGALFDEALENARHCPSRLLRADGEAISFTPEGFLVSNALLVRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR96</accession>
    <name>R6YR96_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Chloramphenicol phosphotransferase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31071">
        <property type="protein sequence ID" value="CDD31071"/>
        <property type="gene ID" value="BN815_02224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="10162" checksum="87CF29E54B3263CC" modified="2013-07-24" version="1">MVLQDNYYGPDLAGMVDLLRGIPVRVVVLCPDVETVKAREAARGKTGYVGFAPAPLLEAFRRETPRLGFWLDNSRLTVEESVEKILEHFSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRB4</accession>
    <name>R6YRB4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Uracil phosphoribosyltransferase</fullName>
            <ecNumber evidence="3 11">2.4.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">UMP pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">UPRTase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">upp</name>
        <name evidence="12" type="ORF">BN815_02259</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="11">Allosterically activated by GTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the UPRTase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="3 11"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31106">
        <property type="protein sequence ID" value="CDD31106"/>
        <property type="gene ID" value="BN815_02259"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006223">
        <property type="term" value="P:uracil salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01218_B">
        <property type="entry name" value="Upp_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034332">
        <property type="entry name" value="Upp_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005765">
        <property type="entry name" value="Ura_phspho_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01091">
        <property type="entry name" value="upp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="5 11 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 11" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11 12" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-phospho-alpha-D-ribose 1-diphosphate binding" evidence="11">
        <location>
            <begin position="134"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uracil binding" evidence="11">
        <location>
            <begin position="202"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23434" checksum="17A32E5AF4927FC2" modified="2013-07-24" version="1">MQQYENVFVMDHPLIQHKLTFLRDVSTGTKNFRELVSEIATLMCYEATRDLPLMDVETVTPMQKTTTKVIAGRKLAFVPILRAGLGMVEGMLELVPSAKVGHIGLYRDHETLKPVEYYNKLPQDIDERDVIVLDPMLATGGSAIDAITIVKRSHPKSIKFLCVIAAPEGLEALTKAHPDVHIYCAAVDECLNENGYILPGLGDAGDRIFGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRY7</accession>
    <name>R6YRY7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase family 36</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00276</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000405">
        <property type="protein sequence ID" value="CDD31341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31341">
        <property type="protein sequence ID" value="CDD31341"/>
        <property type="gene ID" value="BN815_00276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033432">
        <property type="entry name" value="GH36_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17167">
        <property type="entry name" value="Glyco_hydro_36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_hydro_36" evidence="2">
        <location>
            <begin position="1"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="475" mass="52853" checksum="4AAA704CD627DAD9" modified="2013-07-24" version="1">MVNTWNAYNCFITFVWSRAASLIYCGLRNGYGYRDTVQDIQGIIHLEPEMACEKIRFMLSAQVDNGGGLPLVKFTHNPGHEDTPDDPSYVKETGHPAYRADDALWLFPTVYKYVAETGNLDFLQEVIPYANRGSATVYEHLKRAIQFSLDHLGPHGLPAGLYADWNDCLRLGANGESSFVAMQFYYALSILRRFAGKLGQTEDNAWLDGLLAEYRGKIQALCWDGDRYIRGFTEAGERIGAAADPEANLWLNPQSWAVISGLADANQAEGAMDQVYTRLNTPYGAVLMDPPYHAHAFDGALAVIYNPGTKENAGIFSQTQGWLILAEALRGQGQRAYTYFAENAPAAQNDRAKVRHLEPYCYGQFTEGPASKHFGRSQVHWLTGTASTVMVGCVEGILGLRPDLDGLRLVPAIPREWTGFTMDKDFRGCRLHIRVENPHHRESGFTSLTVNGRELPDAYIPAALLTRETEVCLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSB0</accession>
    <name>R6YSB0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyltransferase (Isoleucine patch superfamily)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00346</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000421">
        <property type="protein sequence ID" value="CDD31441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31441">
        <property type="protein sequence ID" value="CDD31441"/>
        <property type="gene ID" value="BN815_00346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="24456" checksum="988B7DBC51F569B4" modified="2013-07-24" version="1">MAHNIPDPNVVFPNAYKTSCFLKNVVQAPNVTIGDYTYYDDPQDPTGFEKNNILFNYPEFGDRITIGKFCCLASGATFIMGAANHRLCSVTTYPFAVFGGAWEENAPPHLDQLPRKGDTVVGNDVWLGRESVVMPGVRIGDGAIVAAYSVVTKDVAPYTVVGGNPARFLKNRFDSQLTQLLLEAQWWDWEPQALAQAVPMLCSPDLEAVKSWLRGLGYGATCT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YST3</accession>
    <name>R6YST3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31641">
        <property type="protein sequence ID" value="CDD31641"/>
        <property type="gene ID" value="BN815_00428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="7763" checksum="E5235E7013BC8118" modified="2013-07-24" version="1">MANYNTCKQCGAPLGGDDIAIYRKLVHRGAQEFLCIDCLAAYFQCPRAEIEKRIRWYRESGQCTLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT04</accession>
    <name>R6YT04_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00455</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000446">
        <property type="protein sequence ID" value="CDD31736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31736">
        <property type="protein sequence ID" value="CDD31736"/>
        <property type="gene ID" value="BN815_00455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="337"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="366"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="462" mass="49736" checksum="647C006E2D9516A1" modified="2013-07-24" version="1">MQFINPAKVCKGMEMGDIPSNREILKTTLSVAWPSVLESFFVNLAGMVDTIMVGTMGSYAIAAVGLTIQPKMLGLALFLSLNVAVSAIVARRKGEGDRESANRVVRMCLLITLAMTAAVSALFVGLAGPIVKLVGSQLDTHDAAVSYLRIIMGGQVFNTVSLVLNAAQRGAGNTRIAMMTNLISNVVNVIFNYLLIGGNFGFPELGVEGAALATVLGTVCACALSIASVLRKDSFINLRAVKGWIPEKQSRSSIGNVWSSSLVEQVCLRIGFLLFSMTVARLGTTELAAHQIGGNMMSMSFSFGDGLSVAAITLIGQSLGRKRPDMAKIYGSVCQRLGLVCACVMGFIYFFFGKEIFLLYSNDPVILDYGAMIMRILSVVLFMQIEQVVQFGCLRGAGDTKFTALVSFISVTFIRPGASWLLCYPVGLGLMGAWLGTALDQLVRFLLTFVRFRKGNWTKLKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9A5</accession>
    <name>R6Z9A5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00496</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000008">
        <property type="protein sequence ID" value="CDD27052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27052">
        <property type="protein sequence ID" value="CDD27052"/>
        <property type="gene ID" value="BN815_00496"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00666"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008733">
        <property type="term" value="F:L-arabinose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019568">
        <property type="term" value="P:arabinose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038583">
        <property type="entry name" value="AraA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004216">
        <property type="entry name" value="Fuc/Ara_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003762">
        <property type="entry name" value="Lara_isomerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38464">
        <property type="entry name" value="PTHR38464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02610">
        <property type="entry name" value="Arabinose_Isome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50443">
        <property type="entry name" value="SSF50443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0054">Arabinose catabolism</keyword>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="6">
        <location>
            <begin position="453"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="472" mass="52192" checksum="02D5619E101F3D24" modified="2013-07-24" version="1">MLVETKARVGVFAIALGAYLPQFPSLVPEFQSQYQTFKTMIPDSVELIDGGIVTTKELAQQAGDKFRAADVDLVILQLLTYATSYNMLPAVRDLDVPVVLVNVQKLRAPDYENTDTAKWLGELYACGAVGEMVADLERAGKRHAVITGVVEGGDPVVQAEIEDWCKAAQVRRRFRDLNLAQIGRPYPGMMDLYIDETNLYHRMWLYTKQFDWEKMWAIADDVTDEAAIRQKAQDILDTFDIEGGGTVEKVWDMARYLVAFEAWVKEEKLGFIASHYDGFAQGKAGVLDSMLIPAFSMLIKEGVACAVEGDIKVAMAMSILKTISGTGQLSEMYSIDFNEDICIIGHSGSGDAAISAKKPTMKIVPVFHGKTGGGYLTQFYPHLGPVTYLGITQDKDGHFKFVVAEGVNEEGPIFTFGDTNMRTRFTCGAREFVNRWSEAGPTHHMAAATGRHIDTILKVAKIFNVPVDVITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9Z4</accession>
    <name>R6Z9Z4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27297">
        <property type="protein sequence ID" value="CDD27297"/>
        <property type="gene ID" value="BN815_00569"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsnC_trans_reg" evidence="1">
        <location>
            <begin position="66"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="18095" checksum="B602B4BDB0A18EA2" modified="2013-07-24" version="1">MAMEQLLELLQEQATLTPAQLASMLGEQEEDVVKAIKKYEKEGIIKGYHAAINWERTEVPRATALIELRVTPQKDTGFDEIAGRVMNFPEVESVYLMSGGYDLAVTVTGKTMSDIAMFVAKRLAPIGGVLSTATHFVLTKYKDGGVVFADDYEEIDERGSNLCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA03</accession>
    <name>R6ZA03_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00579</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27307">
        <property type="protein sequence ID" value="CDD27307"/>
        <property type="gene ID" value="BN815_00579"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="153"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="275"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="35104" checksum="1437CFDADBE6039B" modified="2013-07-24" version="1">MKKNPRPKPTREERRQRARDIRAQAKQDVRKHPLLFTIYVVLRFLVLAVLVLEAVKGDYYNVFLCVLTLVLFMIPTFVEHRLHIDVPNTLEIIILLFIFSAEILGEIQEYYLLFPFWDTMLHTINGFLMAAIGIAMVDILNRSRKFKVRLSPAFVALVAFCFSMTVGVVWEFFEYGMDVFFHTDMQKDTWINTIYSVSLNPEGRNVAQHVAVDSVVVNGEAWPGYLDIGLHDTMKDLFVNFVGAVIFSVIGALYIMGRGKGWFAKKFIPRLKVDELPPPPEEPGLLEPIPLEEPWDESEPPEENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB20</accession>
    <name>R6ZB20_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-L-arabinofuranosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00690</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000053">
        <property type="protein sequence ID" value="CDD27667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27667">
        <property type="protein sequence ID" value="CDD27667"/>
        <property type="gene ID" value="BN815_00690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046373">
        <property type="term" value="P:L-arabinose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010720">
        <property type="entry name" value="Alpha-L-AF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06964">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00813">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-L-AF_C" evidence="4">
        <location>
            <begin position="340"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="534" mass="59843" checksum="852852F69D50E3F7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZC45</accession>
    <name>R6ZC45_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Bifunctional enzyme IspD/IspF</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="10">2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase</fullName>
                <ecNumber evidence="10">2.7.7.60</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="10">4-diphosphocytidyl-2C-methyl-D-erythritol synthase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="10">MEP cytidylyltransferase</fullName>
                <shortName evidence="10">MCT</shortName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="10">2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase</fullName>
                <shortName evidence="10">MECDP-synthase</shortName>
                <shortName evidence="10">MECPP-synthase</shortName>
                <shortName evidence="10">MECPS</shortName>
                <ecNumber evidence="10">4.6.1.12</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="10" type="primary">ispDF</name>
        <name evidence="12" type="ORF">BN815_00746</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Bifunctional enzyme that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>2-C-methyl-D-erythritol 4-phosphate + CTP + H(+) = 4-CDP-2-C-methyl-D-erythritol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="EC" id="2.7.7.60"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP</text>
            <dbReference type="Rhea" id="RHEA:23864"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="4.6.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">In the C-terminal section; belongs to the IspF family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.60" evidence="10"/>
    <dbReference type="EC" id="4.6.1.12" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28052">
        <property type="protein sequence ID" value="CDD28052"/>
        <property type="gene ID" value="BN815_00746"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008685">
        <property type="term" value="F:2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050518">
        <property type="term" value="F:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02516">
        <property type="entry name" value="CDP-ME_synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00554">
        <property type="entry name" value="MECDP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00108">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01520">
        <property type="entry name" value="IspDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00107">
        <property type="entry name" value="IspF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001228">
        <property type="entry name" value="IspD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026596">
        <property type="entry name" value="IspD/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034683">
        <property type="entry name" value="IspD/TarI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003526">
        <property type="entry name" value="MECDP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020555">
        <property type="entry name" value="MECDP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036571">
        <property type="entry name" value="MECDP_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43181">
        <property type="entry name" value="PTHR43181"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01128">
        <property type="entry name" value="IspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02542">
        <property type="entry name" value="YgbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69765">
        <property type="entry name" value="SSF69765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00453">
        <property type="entry name" value="ispD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00151">
        <property type="entry name" value="ispF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01350">
        <property type="entry name" value="ISPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YgbB" evidence="11">
        <location>
            <begin position="232"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" evidence="10">
        <location>
            <begin position="1"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" evidence="10">
        <location>
            <begin position="233"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="10">
        <location>
            <begin position="239"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="10">
        <location>
            <begin position="265"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="10">
        <location>
            <begin position="287"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="10">
        <location>
            <begin position="292"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="4-CDP-2-C-methyl-D-erythritol 2-phosphate binding" evidence="10">
        <location>
            <begin position="363"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="370"/>
        </location>
        <ligand>
            <name>4-CDP-2-C-methyl-D-erythritol 2-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="10">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="10">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="10">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="site" description="Positions MEP for the nucleophilic attack" evidence="10">
        <location>
            <position position="211"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="10">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="10">
        <location>
            <position position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD28052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="387" mass="40821" checksum="6759C7EFD7A1A68F" modified="2013-07-24" version="1">MEGKFGAVIVAAGSSRRMGGQGSKVLEDLGGQPVLLYSFRTLASSLWVGELAVVCREEDRPQVEALLAGKTDKPWVVAPGGQERQDSVLAGVAALDPDTPYLLIHDGARPFVTAEQVDALCQDAVAYGAATLAVPSKDTCKLSDGQGFVESTPPRDRLMAIQTPQAFEREMYLYAARKAQASGLRYTDDCQLIEAAGGRVKLTAGDYRNLKLTTPEDRVAARATLGKEAKAMRVGTGYDVHRLVEGRKLILGGVEVPFEKGLLGHSDADVLAHAIADALLGAAALGDIGKLFPDSDPRYKGADSLGLLSQVCALLGERGFSICNIDATVLAQRPKLAPFIPQMRENLAKACGIAASQVSVKATTEEGLGFTGSGEGMAAQAVCLLEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF70</accession>
    <name>R6ZF70_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29132">
        <property type="protein sequence ID" value="CDD29132"/>
        <property type="gene ID" value="BN815_01064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="56" mass="6220" checksum="82E262547B59D0CF" modified="2013-07-24" version="1">MSGPPRINDTVHNQLDMEWSNSLGEKKKPWKTMLSFVIILAVILLAILVPGFLLGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGX2</accession>
    <name>R6ZGX2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29707">
        <property type="protein sequence ID" value="CDD29707"/>
        <property type="gene ID" value="BN815_01235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="17182" checksum="411BEC7849B3DE6E" modified="2013-07-24" version="1">MKNNSALFYTCSLIEFIGRAQKQKRSAVVELLGRDAILRIYQFADVFHCEPIEKTADDFITLRQIPLGSFDNVADCRYALPDYWTIGEVYERLIEDVVQRDDDQAVVDKLVEVFTSWIDGAISNFNSDFYYQSRDYIATCYREGEICD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGX7</accession>
    <name>R6ZGX7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">S-ribosylhomocysteine lyase</fullName>
            <ecNumber evidence="5">4.4.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">AI-2 synthesis protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Autoinducer-2 production protein LuxS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_01240</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-(5-deoxy-D-ribos-5-yl)-L-homocysteine = (S)-4,5-dihydroxypentane-2,3-dione + L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:17753"/>
            <dbReference type="ChEBI" id="CHEBI:29484"/>
            <dbReference type="ChEBI" id="CHEBI:58195"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="4.4.1.21"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the LuxS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.21" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000170">
        <property type="protein sequence ID" value="CDD29712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29712">
        <property type="protein sequence ID" value="CDD29712"/>
        <property type="gene ID" value="BN815_01240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043768">
        <property type="term" value="F:S-ribosylhomocysteine lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009372">
        <property type="term" value="P:quorum sensing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037005">
        <property type="entry name" value="LuxS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003815">
        <property type="entry name" value="S-ribosylhomocysteinase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35799">
        <property type="entry name" value="PTHR35799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02664">
        <property type="entry name" value="LuxS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01487">
        <property type="entry name" value="LUXSPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0071">Autoinducer synthesis</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0673">Quorum sensing</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007311"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015130"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00024654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00030600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00031777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD29712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="159" mass="18084" checksum="4476D793DB3046FD" modified="2013-07-24" version="1">MEKIASFTVNHLDLLPGVYVSRKDHVGQEVLTTFDLRMCAPNREPVMNTAELHTIEHLAATYLRNEPHWKEKVIYFGPMGCRTGCYLILAGDYQAQDAVPLVRDTFRFIAGYEGEIPGAAPKDCGNYLDQNLPMARFLAKKYLTEALEHPTEKNLHYPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHL9</accession>
    <name>R6ZHL9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01323</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29952">
        <property type="protein sequence ID" value="CDD29952"/>
        <property type="gene ID" value="BN815_01323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22410" checksum="CD000EB41CDDE81D" modified="2013-07-24" version="1">MWLFYTTCRNTQSGNVSTVGLTICKVITVINLVLLCCVVLFLVAMVMIFIIAFAGMGEINYYSYSDGYYGATSAAFVITLLVIVSLIVAAVLALVIAYTVSILRVINRIKGSALNGAPDNRISRFLTGFMMVIGVLTCLGGLFSLIASPVAGIASLASGVCCVLMSLLLGEYRAKMTMLLYPPVQPMYSNMPPYTNVPPQQPGGPQGPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIC9</accession>
    <name>R6ZIC9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01450</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30207">
        <property type="protein sequence ID" value="CDD30207"/>
        <property type="gene ID" value="BN815_01450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018520">
        <property type="entry name" value="UPP_synth-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01066">
        <property type="entry name" value="UPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2 3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="23"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="67"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="27718" checksum="8E8C9EB6FCB2DBD6" modified="2013-07-24" version="1">MALTKTQDVESKLPVHIGIIMDGNGRWAKKRFLPRSAGHRAGASNFRTITRYCSRIGIQYLTIYAFSTENWNRPAEEVGGLMRLFKEYLEEALRDFMDENIRVRFIGDVSAFPAEVRRLIEEVEEASAPKTGMVLNLAMNYGGRAEITRAAQRFAQEVQQGRRSPEELTEELFSQYLYTGGQPDPDLIIRPSGEERLSNFLLWQSAYAELVYFDILWPDFKTSDLDEALAIYASRQRRFGGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIY7</accession>
    <name>R6ZIY7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-fuculose-phosphate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30422">
        <property type="protein sequence ID" value="CDD30422"/>
        <property type="gene ID" value="BN815_01643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="11"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="25934" checksum="A0977F7173B3AEA5" modified="2013-07-24" version="1">MDTARINELKDQICDVCHKMWQLGWVAANDGNVSARLDDGTFLCTPTGMSKSFITPEKLLRVDKDLKVLEGQEGLRPSSEMKMHLRCYEKRPDVMCVVHAHPPGATGFAVAHKAMDMYNMIEDVTVIGSVPLTPYGTPSTTEVPDAIEPYLEEHDVMLLENHGALAVGSDVITAFYRMESLELWAKITINAVILGGSHDISRENIQKLIDLRGFYRVTGRHPGYKKYDNGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ87</accession>
    <name>R6ZJ87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000267">
        <property type="protein sequence ID" value="CDD30502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30502">
        <property type="protein sequence ID" value="CDD30502"/>
        <property type="gene ID" value="BN815_01718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038728">
        <property type="entry name" value="YkvI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37814">
        <property type="entry name" value="PTHR37814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="269"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="324"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="352"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="395" mass="42866" checksum="E6AD959B614F71DD" modified="2013-07-24" version="1">MKKSKTGAIALGVAFVWFTTHFGGGFASGAQIYSYFVRYGAWCILMPVLAMAYNGVFFAYSLRFARKHQTYDYRSYNNAFYGKYAPIFSNLFELLYLCVMCVAPAVAFATGGATLSQLTGLPYLLCTFLIGIFIFVVAIFGTDLVRRVASVLSICIIAGLLVVYLPNIAVNFSQIGAAVQQMGEEQLGVGPALYSAFLYGTFQLSNIAVFVQHAKSFEKPGDAVKSMGVGALVNALMMVMVVLGLMTIYTDPETASQSVPTLFMVENGVGASFMMPLISLLIILGAVSTAVNMVAAMVKRVCGESPDLAQRGEGSRLRVTKKEILAALICCVVDFGIAQFGLLNLIQKAYSGIAYLAIPVILIPYIVHMVVTRFDTKSPARKKSRDVSQENRPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJF6</accession>
    <name>R6ZJF6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Merr family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30582">
        <property type="protein sequence ID" value="CDD30582"/>
        <property type="gene ID" value="BN815_01793"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="3"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="120" mass="14174" checksum="E5BA7AA22081BBA1" modified="2013-07-24" version="1">MESYSISQVAQRFGVEPHTLRFYEKEGIIHPGRTKNGIRVYSQENVAQLEMAMCLKSTGMPLKEIKRYFDLVEQGDATLEERLHIFTDHHQRVLQEIEELQHYLEKIEWKIDYLKHAEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJH0</accession>
    <name>R6ZJH0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Beta-galactosidase</fullName>
            <shortName evidence="5">Beta-gal</shortName>
            <ecNumber evidence="3 5">3.2.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_01808</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.</text>
            <dbReference type="EC" id="3.2.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glycosyl hydrolase 42 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.23" evidence="3 5"/>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30597">
        <property type="protein sequence ID" value="CDD30597"/>
        <property type="gene ID" value="BN815_01808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009341">
        <property type="term" value="C:beta-galactosidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004565">
        <property type="term" value="F:beta-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013739">
        <property type="entry name" value="Beta_galactosidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013738">
        <property type="entry name" value="Beta_galactosidase_Trimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003476">
        <property type="entry name" value="Glyco_hydro_42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013529">
        <property type="entry name" value="Glyco_hydro_42_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36447">
        <property type="entry name" value="PTHR36447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02449">
        <property type="entry name" value="Glyco_hydro_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08533">
        <property type="entry name" value="Glyco_hydro_42C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08532">
        <property type="entry name" value="Glyco_hydro_42M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001084">
        <property type="entry name" value="B-galactosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Glyco_hydro_42" evidence="9">
        <location>
            <begin position="16"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_42M" evidence="10">
        <location>
            <begin position="398"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_42C" evidence="11">
        <location>
            <begin position="615"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="309"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="673" mass="76897" checksum="F4558EFD1CF0E018" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK82</accession>
    <name>R6ZK82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain-containing protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30867">
        <property type="protein sequence ID" value="CDD30867"/>
        <property type="gene ID" value="BN815_00170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="26"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="30014" checksum="F1312509E8C14303" modified="2013-07-24" version="1">MAKIATFYDHIVDISRQENMFVVDALKLARELGVEAVEASANNILGREDEFGQEIAMADMEISAIPAYFHFERDTDVKRQAAPILEAAQFLGAPRLLVIPGFWEEGASPQEREAQTAQMVGCVEELAGLALDYGVSLVMEEYDNELSPIATMEGVRQFLDGCPALSCAFDTGNFRFANQAVGDAYQLLRDRIGHVHLKDRSYTQHNGEGAKTALDGVNLYPAPVGGGDLPLEDILAQLKRDGYDGIYTIEHYGANHALEYLKDSVAWVQARLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKF2</accession>
    <name>R6ZKF2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Beta-galactosidase</fullName>
            <ecNumber evidence="3">3.2.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_02096</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.</text>
            <dbReference type="EC" id="3.2.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.23" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30937">
        <property type="protein sequence ID" value="CDD30937"/>
        <property type="gene ID" value="BN815_02096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004565">
        <property type="term" value="F:beta-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036156">
        <property type="entry name" value="Beta-gal/glucu_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032311">
        <property type="entry name" value="DUF4982"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040605">
        <property type="entry name" value="Glyco_hydro2_dom5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006101">
        <property type="entry name" value="Glyco_hydro_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006103">
        <property type="entry name" value="Glyco_hydro_2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006102">
        <property type="entry name" value="Glyco_hydro_2_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006104">
        <property type="entry name" value="Glyco_hydro_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16355">
        <property type="entry name" value="DUF4982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18565">
        <property type="entry name" value="Glyco_hydro2_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00703">
        <property type="entry name" value="Glyco_hydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02836">
        <property type="entry name" value="Glyco_hydro_2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02837">
        <property type="entry name" value="Glyco_hydro_2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00132">
        <property type="entry name" value="GLHYDRLASE2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49303">
        <property type="entry name" value="SSF49303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_2_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_2" evidence="6">
        <location>
            <begin position="104"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_2_C" evidence="7">
        <location>
            <begin position="221"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4982" evidence="9">
        <location>
            <begin position="565"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro2_C5" evidence="10">
        <location>
            <begin position="634"/>
            <end position="734"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF18565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="740" mass="82873" checksum="ABD78E64987B5D6D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKJ1</accession>
    <name>R6ZKJ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30977">
        <property type="protein sequence ID" value="CDD30977"/>
        <property type="gene ID" value="BN815_02136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="20"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="263" mass="28423" checksum="BC8D88B9D7C0272E" modified="2013-07-24" version="1">MKLGCCASLWEDMILKLPAAGADYAEAGFSSLMGKSLDQVRARAAQLEKAGVSLESMNVLFPGDFRLTGPQADFSAVDSYLEENLPKAQALGVKVVVFGSGGARRVPEGFPQEEAFAQLVELCREHIAPAAAAHGITCCVEPLNQKETNILTTSGECFRLVEAVNHPNLQLLVDLYHFDLEGESLSALEGYRGRLGHCHIASAQNSRLVPQPWDGQDYLPFFQALAAMGYEGRLSLEGDTRGGLPQIRSSLAYLRQLIGQAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKP8</accession>
    <name>R6ZKP8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative aldose dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000357">
        <property type="protein sequence ID" value="CDD31007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31007">
        <property type="protein sequence ID" value="CDD31007"/>
        <property type="gene ID" value="BN815_00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="26052" checksum="22F20305596EEDB1" modified="2013-07-24" version="1">MKFENQVVIVTGASSGIGEGVARMFLEEGARLVGCGIEPAMKLESENAIYVQADLTNPDQAQNVVDKAVEAFGQVDKLVCCAGVTFIGSLENTEYNTFMRELSINLGGVFNMCKAAVKELVKSQDPSIVTIGSDLGVRPIPERIGYCPSKAGVIMLTKCIALEYAPKVRVNCVLPGLVRTPMIEQRFQEAQDPAALEESYASLYPLHKMGKVSDMANAVKFLSSSEAGFITGEIMNVCGGSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL91</accession>
    <name>R6ZL91_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02361</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31217">
        <property type="protein sequence ID" value="CDD31217"/>
        <property type="gene ID" value="BN815_02361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004439070" evidence="1">
        <location>
            <begin position="29"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S11" evidence="2">
        <location>
            <begin position="27"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="19503" checksum="13485FB5E1215FC8" modified="2013-07-24" version="1">MLKHWRNRAAALGLSLCLVGALCPVAQAAGPEVSAQSAVVLTADTGTVLFEKDGHTPRPVASTTKIMTALLALEAAQERGDPLVDITQEMVAVEGSSMGLQAGDSISLTETGRTHQIRVHMAYLGHPVAGDPVYGPKKSITSLEGQCLHAGKIGFVHPRTGEYLEFEAPLPAYFTGFLQKLKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLH5</accession>
    <name>R6ZLH5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type I site-specific deoxyribonuclease</fullName>
            <ecNumber evidence="3">3.1.21.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_00240</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage of DNA to give random double-stranded fragments with terminal 5'-phosphates, ATP is simultaneously hydrolyzed.</text>
            <dbReference type="EC" id="3.1.21.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HsdR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.3" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31302">
        <property type="protein sequence ID" value="CDD31302"/>
        <property type="gene ID" value="BN815_00240"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009035">
        <property type="term" value="F:type I site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007409">
        <property type="entry name" value="Restrct_endonuc_type1_HsdR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040980">
        <property type="entry name" value="SWI2_SNF2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04313">
        <property type="entry name" value="HSDR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18766">
        <property type="entry name" value="SWI2_SNF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="12">
        <location>
            <begin position="303"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="641"/>
            <end position="666"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="652"/>
            <end position="666"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1018" mass="116099" checksum="099A7EF0A7287E96" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLI9</accession>
    <name>R6ZLI9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Channel protein hemolysin III family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00252</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0073 (Hly-III) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000397">
        <property type="protein sequence ID" value="CDD31317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31317">
        <property type="protein sequence ID" value="CDD31317"/>
        <property type="gene ID" value="BN815_00252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019835">
        <property type="term" value="P:cytolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004254">
        <property type="entry name" value="AdipoR/HlyIII-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005744">
        <property type="entry name" value="Hy-lIII"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20855">
        <property type="entry name" value="PTHR20855"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03006">
        <property type="entry name" value="HlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01065">
        <property type="entry name" value="hlyIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="25403" checksum="8DCF9D83C7EE22A6" modified="2013-07-24" version="1">MNYTTAQLPRREKNALRLELRRSLGLPRYTLGEEIFSAVSHGVSALYAVGALVWLLLTCRPTALRLVSAAVFGGTMVLLYTVSTLYHGLGLNRAKVVFRSLDHCTIFLLIAGTYTPITLVCLGGWKGWAMFGTVWAAAVLGVVLNAVSVERFKKVSMACYLAMGWVVVLAMGDFYRSASPLSFWCLLAGGILYTVGAALYGVGKKIPYIHPVFHLFVLAGSVLHTVSVWGILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV98</accession>
    <name>R6XV98_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00688</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000053">
        <property type="protein sequence ID" value="CDD27663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27663">
        <property type="protein sequence ID" value="CDD27663"/>
        <property type="gene ID" value="BN815_00688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035396">
        <property type="entry name" value="Bac_rhamnosid6H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035398">
        <property type="entry name" value="Bac_rhamnosid_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17389">
        <property type="entry name" value="Bac_rhamnosid6H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17390">
        <property type="entry name" value="Bac_rhamnosid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_rhamnosid6H" evidence="1">
        <location>
            <begin position="2"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_rhamnosid_C" evidence="2">
        <location>
            <begin position="207"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="40891" checksum="CBF55FCDFADBCEBF" modified="2013-07-24" version="1">MKFHYGDWLALDGPRYGMDPETVWGGTDVTFLCSVYYYRCAQILAGAAKALGYSAEQQEYGQLAREIKAAIRKEFFTATGRCAAATQTGLVLSLMYGLVPEGYEEKNRQALKALLEGAEMHLKTGFLGTPVLCRALSKCGDSETAYTLLLQEDLPSWLYEVNMGATTIWERWNAVLPDGVISGIGMNSMNHYAYGSIVEWMYRNMCGINPTEEAPGFKRVRLAPEPDSRLGRAKATVNSPAGLYESGWQYEEDGSLTYTFAIPFDGEGALVLPNADLEQLTINGVPAKAADLAARESGGCCRPAGRRRRKGCFAGRPVCGEAGPINTKAFRGNRSYKSREAFPQGEVSRLSAWDAIQVESWPELWYCLGLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWW8</accession>
    <name>R6XWW8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH gntR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28243">
        <property type="protein sequence ID" value="CDD28243"/>
        <property type="gene ID" value="BN815_00793"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="128" mass="14132" checksum="D9234F472B834B0E" modified="2013-07-24" version="1">MELDFNGEKPIFQQIAEGLEDGILSGAFPEEGQIPSITEFSVLYKINPATALKGINLLVEEGVVYKKRGVGMFVAQGAAERLRVKRKEGFYDRFVASLVAEAKRLGIGKEELEALIARGFAQQEKEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6XX01</accession>
    <name>R6XX01_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ion-translocating oxidoreductase complex subunit E</fullName>
            <ecNumber evidence="7">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Rnf electron transport complex subunit E</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rnfE</name>
        <name evidence="8" type="ORF">BN815_00803</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NqrDE/RnfAE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28278">
        <property type="protein sequence ID" value="CDD28278"/>
        <property type="gene ID" value="BN815_00803"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00478">
        <property type="entry name" value="RsxE_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010968">
        <property type="entry name" value="RnfE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006102">
        <property type="entry name" value="NQR_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01948">
        <property type="entry name" value="rnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="131"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="173"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="24130" checksum="8D1D909E54D08043" modified="2013-07-24" version="1">MAEKKKGLLQEFTKGIIKENPVLRLVLGCCATLAVTTAASNAIGMGAATTFVLVCSNAVISLLRKVIPDKVRIPAFITIVAGFVTIVQLFIQAFSPALDDALGVFLPLIVVNCIILGRAEMFASKNKVLPSILDGLGMGVGFTATLLAMGIIRELLGAGTVFGIPVLSGFMEPIIIFLLPPGGFFVFGMLVALAGKLSKEGKAPETTGCGNCPLAASCSKVCEKDNGKEAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXD3</accession>
    <name>R6XXD3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00839</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28403">
        <property type="protein sequence ID" value="CDD28403"/>
        <property type="gene ID" value="BN815_00839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="388"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="416"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="454" mass="49315" checksum="0F579DC3CFEA0F8F" modified="2013-07-24" version="1">MNRDLTQGPVTKSMLLFALPMILGNLFQQFYNVADTLIVGQFLGSTALAAVGSSYTLMTFLTSILLGMCMGSGAVFSIRFGEGDLPRLKNSLSLSFLLIGGFTVALNVAVFLLIDPMMALLQVPADVIPLMRSYLWVIFWGIGGTFLYNYFASLLRAVGNSATPLVFLGVSAVLNIVLDLVFVVAVPWGVAGAAFATSFSQWVSGVGLLVYTWKRMAHLRPSRQDVYWKRDRVGEIARFSLLTCVQQSVMNFGILMVQGLVNSFGTVVMAAFAAAVKIDSFAYMPVQDFGNAFSTFIAQNYGARDMGRIRKGIRSAVLAAAVFSGAVSVLVCVFAEPLLLLFVKPEEREILAVGVQYLRVEGAFYVGIGILFLLYGLYRAIQRPGMSLVLTVISLGTRVALAYALSAIPAIGVVGIWWSVPIGWALADVAGVVYYKRNRDRLLRPQQPQKGANP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXY6</accession>
    <name>R6XXY6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PMT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00890</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28593">
        <property type="protein sequence ID" value="CDD28593"/>
        <property type="gene ID" value="BN815_00890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="181"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="224"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="390"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="417"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="84"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="447" mass="51357" checksum="9BE1E5E418052856" modified="2013-07-24" version="1">MAGIFNSFKTKVKKDFLSFMKENKAALIVLFLLLVLRLMTLYSLGFTYSLESDDAAYIESGIQFARTGTITMHDDYPSAQIMPGMTVLIGIFVLLFGEGKLLWISLKVLWILMGLGTAWLIYKSVCLFVPKWCGIIGMLPLFRADFIWMDNLILTETPFMFALTAMVYYTLRMGKQPGFRYFWPCAIAYVAGLMLKANIALYPLFALIYLLVVKYDRKLLAKQCVVLAGIVLCFVIPWSIRNYIHFHAFVPLTYGAGNPTLLGTYQGEQYPSDDELDYETNVEQVAKEKYADYYDENGEVLPQYQRYVSLQKDAIKAKYRQQAWWDTDYKKMLYSYGVIKPQMMIESVFYWDTVFNQPLEALQQIQRVDLYLCIASLIAAFVLKRHRKPLLFVTAAYLGNIYIYSMTYAFSRYNASLMSMRFILIGIGAGLLVSLLKRGMDTLAAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZF3</accession>
    <name>R6XZF3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Nuclease SbcCD subunit D</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">sbcD</name>
        <name evidence="11" type="ORF">BN815_01060</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'-&gt;5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 8">Heterodimer of SbcC and SbcD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the SbcD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29128">
        <property type="protein sequence ID" value="CDD29128"/>
        <property type="gene ID" value="BN815_01060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00840">
        <property type="entry name" value="MPP_Mre11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041796">
        <property type="entry name" value="Mre11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004593">
        <property type="entry name" value="SbcD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026843">
        <property type="entry name" value="SbcD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12320">
        <property type="entry name" value="SbcD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00619">
        <property type="entry name" value="sbcd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 8 11" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="9">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="SbcD_C" evidence="10">
        <location>
            <begin position="264"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD29128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="41741" checksum="32B4BC186C0A7D28" modified="2013-07-24" version="1">MKLFHTSDWHLGRMLYGRSLLEDQRWFLRQVFLPAVERERPCCVLIAGDVYDRQIAPVEAIALFDETLSQLLELGTKVCVIAGNHDGPGRMALLKNALRHSGVYFATQLSDAFSPVLLEEKGQALQIFPLPYFDAALGREFLGDESLRGEGACMELLLERLVPLFQPGAGHLLVSHCFAAGAQTSDSESATFVGGSGQVPPALFAPFDYVALGHLHGPQKAGERGQYSGSPLKYSVDEERQKKGYFQLEWDGREMARQFVPCAPLRDVRRVKGTFAHLLEAGEQSPVEDYVEIELTDSAPVLLAAERLRPFYPNLLSVLNPWMGESLTGERAARLKGQDEATVFAAFLREVCGTEPDPQDQALFQEVLESLGESQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZL3</accession>
    <name>R6XZL3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01087</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000132">
        <property type="protein sequence ID" value="CDD29208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29208">
        <property type="protein sequence ID" value="CDD29208"/>
        <property type="gene ID" value="BN815_01087"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="24940" checksum="54ABF082EBE9773D" modified="2013-07-24" version="1">MARNKYPEVTEERILDVAQRLFLEKGYENTTIQDIVNELGDLTKGAVYHHFKSKEEIMDAVSDRMFFENNPFEAVKGRTDLNGIQKLREVVRLNQADTARTNMTAQSIPMNHNPRVLVGMIDANRRILTPYFLELIEEGNRDGSIHTEYAKEIAELLPLLTSLWLLPSVFPATKEEMRRKFSFIGEMMEKMGVPLFNDTIQRLVDEFFEQIPDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y005</accession>
    <name>R6Y005_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000142">
        <property type="protein sequence ID" value="CDD29348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29348">
        <property type="protein sequence ID" value="CDD29348"/>
        <property type="gene ID" value="BN815_01129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8226" checksum="564206F480D0DE46" modified="2013-07-24" version="1">MEELSSQALPKAYTAWSSGLSAGNSTSACSASMVRVSVTSKGTARWEAGAEAKTIFEAMGSAQEFQLYRGSGSRSWPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0K7</accession>
    <name>R6Y0K7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SrtB family sortase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27405">
        <property type="protein sequence ID" value="CDD27405"/>
        <property type="gene ID" value="BN815_00620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05826">
        <property type="entry name" value="Sortase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009835">
        <property type="entry name" value="SrtB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="29455" checksum="AA71009E34B61F21" modified="2013-07-24" version="1">MKKEILIVLSVVLVVVIVGCGLWLGYYAVDSQHQKQTYETLAKDFLLEEPESNLSLAEKVSPEEPPTTQESVVTLTTAPPRHDLAALQAENPDCVGWLTIPDTTVDYPVVWTPSDPEHYLRRDFYDSYASGGTPFLDGRNKPQAEGQNLILYGHNMLDGSMFKPVLQYLTPNFQVTHEDVYLELNGIQYHYQVLAALETSTRSLVYTYTDLSGAAEMEDFRAALLEETGVGAIPQAEGYLTLSTCNNQGGNSRVLVIAALMEEVST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y140</accession>
    <name>R6Y140_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29778">
        <property type="protein sequence ID" value="CDD29778"/>
        <property type="gene ID" value="BN815_01263"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10169" checksum="850D7A6E5B3A0DF1" modified="2013-07-24" version="1">MYSAIQELFYGSYSASDLPTSNVPGYRESLRHTIELSEQLRAGLSQEQKELFEAYCENANAGHALMGEAYFAQGFSLGVRLLLEALHAPRPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1F0</accession>
    <name>R6Y1F0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pyridoxal phosphate-dependent enzyme methionine gamma-lyase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29898">
        <property type="protein sequence ID" value="CDD29898"/>
        <property type="gene ID" value="BN815_01291"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009651">
        <property type="entry name" value="Met_g_lyase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46658">
        <property type="entry name" value="PTHR46658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06838">
        <property type="entry name" value="Met_gamma_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="46292" checksum="7FBBCB4BE1B93796" modified="2013-07-24" version="1">MELYPAFHISPKLLEAAQRAEELARPQFAEIESIQRYNQQKMLAAFSKAGVSESHFVGSTGYGYGDRGRDVLDQVYAYAFGAEDALVRHNFVSGTHTLTVALFGMLRPGDKMLCVTGTPYDTIQGVIGMEGREEPGSLKEFGIHYEELPLRPDGTPDLEAMERRITPEYKMIYIQRSRGYSLRPSLRVEDIAPIVEISKRKAPDAIVMVDNCYGEFVEREEPLAVGADIIAGSLIKNPGGGIAPTGGYIAGRRDLVELCSYRLTTPGTGREIGCTLGNNRELFMGAFHAPHVAGEALKTAVFASALFSQLGFGVTPTVEEKRGDIIQVMLLEKPENLIAFCKGVQKGAPVDSFVVPEPSDMPGYDSQVIMAAGAFTLGSSIELSADAPLREPYAAWMQGGLNYHSGQLGMLLAAQEMANEGLLNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2C2</accession>
    <name>R6Y2C2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome-recycling factor</fullName>
            <shortName evidence="3">RRF</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Ribosome-releasing factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">frr</name>
        <name evidence="6" type="ORF">BN815_01451</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the RRF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30208">
        <property type="protein sequence ID" value="CDD30208"/>
        <property type="gene ID" value="BN815_01451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006415">
        <property type="term" value="P:translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00520">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00040">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002661">
        <property type="entry name" value="Ribosome_recyc_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023584">
        <property type="entry name" value="Ribosome_recyc_fac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036191">
        <property type="entry name" value="RRF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20982">
        <property type="entry name" value="PTHR20982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01765">
        <property type="entry name" value="RRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55194">
        <property type="entry name" value="SSF55194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00496">
        <property type="entry name" value="frr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRF" evidence="5">
        <location>
            <begin position="24"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="141"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="21123" checksum="4763BDBAA6C36B3A" modified="2013-07-24" version="1">MAEMKDVFAKAESKMNKSIDHLMEEYAAIRAGRANPAVLDHIMVNYYDTPTPINQLAAVSVTEARVLTIQPWDMSVLRGIEKAIQTSDLGVNPQNDGKVIRLVFPPLNEERRKELTKDVSKLGEEAKVAIRAIRRDAIEKLKEMKKAGDITEDDLKQAEKKIQDLTDKYVKNAEDCAQKKEKEIMAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2I0</accession>
    <name>R6Y2I0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30268">
        <property type="protein sequence ID" value="CDD30268"/>
        <property type="gene ID" value="BN815_00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="257" mass="28825" checksum="CE97AA0BF0C4C865" modified="2013-07-24" version="1">MARERYLINAGEDTIHSNEIKLVTAKDKRENWWYYHKRQIIPAILVVALLAVFIHSMATKVDPDYTIGLLTSFTMPETGVQQLEECIAAYADDRNGDGKVVIQVSNYVMSDDASADPSAQEAAWVRFTADASLNATMIYLHDSTAFSVLEGDFAGFFQYKDGTLMPEDATDYENAMYSWDDIAAFANLQPVGSEDGMYTPEMISELFSRLRVSVRAAEGSSIEKKEKDMDYYNDSMALFERMKNDEPITGDTTAEEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2L6</accession>
    <name>R6Y2L6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30298">
        <property type="protein sequence ID" value="CDD30298"/>
        <property type="gene ID" value="BN815_01532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011437">
        <property type="entry name" value="DUF1540"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07561">
        <property type="entry name" value="DUF1540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1540" evidence="1">
        <location>
            <begin position="5"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1540" evidence="1">
        <location>
            <begin position="64"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="107" mass="11551" checksum="6C8EB779CE7EAB5D" modified="2013-07-24" version="1">MNRLECQVNSCQHFQNNQCCLMGIQVDGPAAQESSQTCCASYEERRPGAGQNAMGQNPSVETEIHCKVKGCAYNSHNRCDAQNVCVACCCGDVSSKSGTQCSTFQCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y348</accession>
    <name>R6Y348_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FeoA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01659</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000244">
        <property type="protein sequence ID" value="CDD30438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30438">
        <property type="protein sequence ID" value="CDD30438"/>
        <property type="gene ID" value="BN815_01659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="6917" checksum="23FBFB5ED37005C0" modified="2013-07-24" version="1">MGELSAQGELRRQLRDLGFVPGAQVECLGKSPLGDPAAYRVRGAVVALRRRDAQRIALRRGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3H6</accession>
    <name>R6Y3H6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PF10947 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01726</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30513">
        <property type="protein sequence ID" value="CDD30513"/>
        <property type="gene ID" value="BN815_01726"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039522">
        <property type="entry name" value="RING_finger_1_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011011">
        <property type="entry name" value="Znf_FYVE_PHD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14446">
        <property type="entry name" value="Prok-RING_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57903">
        <property type="entry name" value="SSF57903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="213"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="274"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="334"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="356" mass="38777" checksum="381E408FC28A55BF" modified="2013-07-24" version="1">MLDYTGIKCPVCGVPFRSGDDIVVCPECGAPYHRACYQEKGACIFDDLHKEGKEWKPPAPPQAPDPRAEIKDQECPVCGTLNGHSALFCNRCGASLTGEPRQYNNTAVNQGGAQGPYGGATQQGSGYGAYPPPHTGFGGTVPPFAFDPMGGVSPAEVLDTGVSFGDASKLVKQNTAYYMPVFRYMKQTGKNKFNFSAFLFSGAWMLYRKQYKYGAIVTAIMFALFIALQAVCYLVWLPMYTQLAQQAGVDLTTQAGITTEQSIVISQLLAQDPLNLFCFYLPLVIVAAMLVVMLIVGFRGNKMYMRHCVRTVRKVKATGNDGDPNNTLDARGGVNTSIAVCLFVCYMLIVNLPLWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3M5</accession>
    <name>R6Y3M5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HGSNAT_cat domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00066</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000090">
        <property type="protein sequence ID" value="CDD28455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28455">
        <property type="protein sequence ID" value="CDD28455"/>
        <property type="gene ID" value="BN815_00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012429">
        <property type="entry name" value="HGSNAT_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07786">
        <property type="entry name" value="HGSNAT_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="HGSNAT_cat" evidence="2">
        <location>
            <begin position="11"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="28107" checksum="E45881ABBD876701" modified="2013-07-24" version="1">MSGEGKRPHYGLLDTVRGVCILSMVAYHGMYDLVDIFGLPSAWYTGLPGYIWQQSICWTFILLSGMCWQLSRRHVKRGLLLVGCGAAITLITWLVMPSQRILYGVLNLLGLSALLLIPLDKVFRKIPAWAGLGGALLLFALTKNVSRGSLGFEGLVLCRLPRWLYATDLLAVVGFPSPSFWSTDYFPLLPWFFLFCAGYFLWSLLDKSPRAKELLRPGLRPLSFLGRHSLAIYLIHQPALMAVFSVLGRIAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3X8</accession>
    <name>R6Y3X8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00873</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28550">
        <property type="protein sequence ID" value="CDD28550"/>
        <property type="gene ID" value="BN815_00873"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="16511" checksum="7714C8353ACAAC8F" modified="2013-07-24" version="1">MELDMRKAQPQDLDGLDQVMLVISDAAGERGKVLQLLEHITADPQKYLLVAEDKDTGTICGSLFGVVFEDICDSCRPILLVENVAVLESYQGKGVGRKMFQEIERWAKEEWDCHYEILASGLNRTGAHKFYHALGFEEVKGFKKYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y438</accession>
    <name>R6Y438_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Adenosylhomocysteine nucleosidase</fullName>
            <ecNumber evidence="2">3.2.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01933</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 1/2.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.9" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30728">
        <property type="protein sequence ID" value="CDD30728"/>
        <property type="gene ID" value="BN815_01933"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008782">
        <property type="term" value="F:adenosylhomocysteine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008930">
        <property type="term" value="F:methylthioadenosine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009164">
        <property type="term" value="P:nucleoside catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010049">
        <property type="entry name" value="MTA_SAH_Nsdase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01704">
        <property type="entry name" value="MTA/SAH-Nsdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="6">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="25091" checksum="8DADD63CF8C0B948" modified="2013-07-24" version="1">MEQKPIGLIGAMKIEVDAILAALENTRQETHGGMAFTQGVLSGVEVVVAQCSPGKVNAALCAQAMIDHYSPRLVLNLGVAGGIGENVHIGDVVIATACVEYDFDTSAVDQWPAGQLTLPGYEEPMRFLPCGQTLAHILSRAAEGLYGRAHLGIVATGDKFVADPRFGDYLQKEFGALACEMEGGAIAHACLVNKIPCAVLRTISDNAHDSETVDFVTFAKSSAEKAQQLLRAVLPQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y463</accession>
    <name>R6Y463_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidinol-phosphate aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Imidazole acetol-phosphate transaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hisC</name>
        <name evidence="6" type="ORF">BN815_00907</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>2-oxoglutarate + L-histidinol phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28645">
        <property type="protein sequence ID" value="CDD28645"/>
        <property type="gene ID" value="BN815_00907"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01023">
        <property type="entry name" value="HisC_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005861">
        <property type="entry name" value="HisP_aminotrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="5">
        <location>
            <begin position="44"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="357" mass="39020" checksum="40CFA956B9045929" modified="2013-07-24" version="1">MYQLNDKIKDLKPYDPVTEDSRIHLDANESFLPLPAPILEELAAAVPQVAFNRYPDPAAQELCQAFAQYYGVPVENVAAGNGSDELITVLFTGFLQKGEAFATLEPDFSMYAFNGYLQEARHVPIPKGADYAIDVDRTIQTCRQEGVKLLIFSNPGNPTSIVCPRQEVRRLIQGLPDTLVVLDEAYMDFSDQSLLPEFHDYDNLLLLRTCSKAFGMAGLRLGFAVGQKRLVDAIKGVKSPYNVNALSQKLGAAVLRHPQAMKEALAEILASREQLLQGVRALGEAFPGRFALLPCATNFATLRMADGEALYHTLGEQGISIRYTGGLVRITCGTAGENQAVLTKMADYFAAVPAKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y481</accession>
    <name>R6Y481_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30768">
        <property type="protein sequence ID" value="CDD30768"/>
        <property type="gene ID" value="BN815_01972"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002567">
        <property type="entry name" value="GK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01621">
        <property type="entry name" value="Fusion_gly_K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="14749" checksum="4D904577F438B72B" modified="2013-07-24" version="1">MKKKNFVSLLFGTVGIILFALGMCMCLLPEWGAFTPGVVIAAVGAVVLLVLLLVRRKMAGKPAVHISGKAVGALVLGVGMCCSMVWMGNLFIPGIILGLLGIALVAAAHPVYRRVTKKEREKLAPRILQLTEELSRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4C5</accession>
    <name>R6Y4C5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aminopeptidase P domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00930</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28715">
        <property type="protein sequence ID" value="CDD28715"/>
        <property type="gene ID" value="BN815_00930"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007865">
        <property type="entry name" value="Aminopep_P_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05195">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01011">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0464">Manganese</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP_N" evidence="3">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="419" mass="47684" checksum="B5505C1C6BD4B3AE" modified="2013-07-24" version="1">MNKDFYQGNRERLYAQLQENSLLVLFAGVEVRKTNDEFYPFYTNRNFLYLTGLDQKELALIARKDGQGQVAEKVYILPPDWMAERWTGTRIKPNEATDLSGIQEIGYVADFEGDLHKLATSGNYQHLYLDLYRVSPTDRDEPAHLLLRRVASDYPFLRVENANALIRRMRTIKQPCELEAMRKAEEITCAGITSMMKASKPGMYEYQYKAVFDYAIGQYGPQGPGFPSIISAGKNNFCIHYYSYKGQAHDGDMVLNDVGAWHNYVMTDVSRGWPCNGKFNERQTLLYNIALETSNHMFSIIKPGMAMKDVDGESHRYCAQLLKDAGVLDDVNNISKYMWHGGAHHVGFDVHDAVETPETIAPNMVFCVDIGIYHEEWGIGFRVEDNCLVTEGGCENLSAMTPRTIDAIEDTMRQNFVAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4E3</accession>
    <name>R6Y4E3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_02020</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30833">
        <property type="protein sequence ID" value="CDD30833"/>
        <property type="gene ID" value="BN815_02020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="866"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="922"/>
            <end position="948"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="960"/>
            <end position="983"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="2"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="220"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1000" mass="109909" checksum="0EEA9CFDAD7F39F1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4V7</accession>
    <name>R6Y4V7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30963">
        <property type="protein sequence ID" value="CDD30963"/>
        <property type="gene ID" value="BN815_02122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020483">
        <property type="entry name" value="Uncharacterised_YgbA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11756">
        <property type="entry name" value="YgbA_NO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="13287" checksum="6B74B9D30CD7891B" modified="2013-07-24" version="1">MSNTAQKRQREKEMVSQMIALYCKKHHGGKGSLCPQCRALEEYARARSDKCPFMEEKTFCSNCKVHCYKPEMREKIREVMRFSGPRMLLVHPAAAIRHVIETRREKGKTQKGAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y598</accession>
    <name>R6Y598_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">NAD kinase</fullName>
            <ecNumber evidence="5">2.7.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent NAD kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadK</name>
        <name evidence="6" type="ORF">BN815_02266</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + NAD(+) = ADP + H(+) + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:18629"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NAD kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.23" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31113">
        <property type="protein sequence ID" value="CDD31113"/>
        <property type="gene ID" value="BN815_02266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006741">
        <property type="term" value="P:NADP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00361">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002504">
        <property type="entry name" value="NADK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01513">
        <property type="entry name" value="NAD_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5 6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 5" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="65"/>
            <end position="66"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="137"/>
            <end position="138"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="176"/>
            <end position="181"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="278" mass="30222" checksum="1C6DC7DB2A6E635C" modified="2013-07-24" version="1">MKIAVVPNLTKEAAQTCTDEVLSILGRCGCETVLKTDLFTAHGIYQERVEDSLRACDVFIAIGGDGTIIHTAKLAASLGKPILGVNAGTLGFTAGVERHQLSLLANLVKGEYREERRLMLSVELSSGGETRAFYAINDAVLSGEPAKIIDYNMVLGRRSYRYRADGFIVATPTGSTAYSLSAGGPVIEPNMDCLVYTPICPHSLFNRSVIFGADSHLAVNIPENIGKLYLSVDGETPLEVSTGDQLRFFAADRCARFIRLGAHDFYDILNQKIIETRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5S1</accession>
    <name>R6Y5S1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ApbE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29235">
        <property type="protein sequence ID" value="CDD29235"/>
        <property type="gene ID" value="BN815_01103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="50" mass="5499" checksum="850D576C718BDB7D" modified="2013-07-24" version="1">MLGLEDSLPLLEQFDSQALFITQERQIYLTSGLEDAFTLSSGDYTLAGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y755</accession>
    <name>R6Y755_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01238</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000170">
        <property type="protein sequence ID" value="CDD29710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29710">
        <property type="protein sequence ID" value="CDD29710"/>
        <property type="gene ID" value="BN815_01238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="5"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12917" checksum="5E8F1EF1376A90B6" modified="2013-07-24" version="1">MERLRVILSYLHENYGEKITLEDVAKQVGLCKSECCRFFKRQMGQSLFDYLLDYRIGRSLALLEEGVATVAEVASQVGFSNPAYFSKVFRARMGRSPRKYQKQGAAVGPEGGDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Y4</accession>
    <name>R6Y7Y4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30010">
        <property type="protein sequence ID" value="CDD30010"/>
        <property type="gene ID" value="BN815_01338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06259">
        <property type="entry name" value="YdcF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003848">
        <property type="entry name" value="DUF218"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02698">
        <property type="entry name" value="DUF218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF218" evidence="1">
        <location>
            <begin position="23"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="199" mass="22199" checksum="58AF55925A629438" modified="2013-07-24" version="1">MASRIITDISDFIFVEDTPEPADAIFLPGGTHAEQPEYAAALYRQGYGKWLIPSGGVSVKKERWPGVSSKADVYTGDYHTDCAFFIDVLRKNGVPASAIVGEFQSGHTRDNAFLSRQAVDEKGLVFRTALIVCKAFHARRCLMLYQLAFPDVSFKVCPVPCYNITKENWYKTEAGLHRVLGELARCGHQFVGDIENYLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Z0</accession>
    <name>R6Y7Z0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30020">
        <property type="protein sequence ID" value="CDD30020"/>
        <property type="gene ID" value="BN815_01346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="163" mass="18476" checksum="5BECD2462B4BBDB8" modified="2013-07-24" version="1">MLYCTKCHGACQDSAAKCPNCKNSKLRPLEGEDMVRLHRADQYTAGLLEQRFAQEGVDFQMEPFSGGWVSYLYDNDVLPTDKLVLVRWSDYDRAKELSSQVCRQVEAERAAVGQEEEGETFEDMPRKKRILVQVVSVLAFILLIMAAVYGADFAANWLKGLWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Z4</accession>
    <name>R6Y7Z4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01351</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000189">
        <property type="protein sequence ID" value="CDD30025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30025">
        <property type="protein sequence ID" value="CDD30025"/>
        <property type="gene ID" value="BN815_01351"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="8"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="135"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="135"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="26702" checksum="AB9513C54653B830" modified="2013-07-24" version="1">MDSGEKKNILVVDDDREIVRAIALNLESEGYNVFKAYDGMEALDLAMTKDIHLILIDVMMPKLDGLSAIMKIRERKNLPIIVLSAKSEDSDKVIGLSMGADDYVTKPFNPMELTARVKSQLRRYTSLGDIHSSGENTIVNGRLTFNLDEHVLYADGEPVKLTATETKIVELLMRNPGRIFPAEEIYSKIWNESAYSTENTVMVHIRRIREKIEINPGEPEYLKVVWGIGYKFEKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y874</accession>
    <name>R6Y874_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dipeptidase PepV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01378</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30120">
        <property type="protein sequence ID" value="CDD30120"/>
        <property type="gene ID" value="BN815_01378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016805">
        <property type="term" value="F:dipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010964">
        <property type="entry name" value="M20A_pepV-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01887">
        <property type="entry name" value="dipeptidaselike"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0224">Dipeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="248"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="459" mass="49419" checksum="D8D80F63F5311D73" modified="2013-07-24" version="1">MLFGEKILDYWDDILKDLATVVAIPSVAKPQEGEHPFGDQCARALDTVVAMAEGYGLKAKNVGYHAAHAEYGEGEGNAVVMAHLDVVPAGEGWDTDPYTMVIDDNLAFGRGVSDNKGPAIVALHCLRALKDAGVKGNRKLRVIFGSAEEIGMDDMPYYFEREQKPDMGFTPDASYGICHCEKGHMGFEVHAKNDSAVVKSFEAGTVSNAVPFKAECALACSPEEVEKLQAKAAKSKGMFEVSPTQEGCTVLCHGKAAHAASPEDGVNAAAHLVELLCKVFKKDQLGSFFRFIHEKIGLCTDGEKIGVKMSDEPSGPLTFNLGLVHVDGDACSLTVDIRYPATKQGAEISATLKEQVESCGVEFVLLSDAEPLYLPKESPLVSLLAGAYKDVTGEACDIFSMGGGTYARQMFGKGVAFGAGFPDQEDGRAHQANEFLDLRRFKLHAQICLEAMYRMLTAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8D7</accession>
    <name>R6Y8D7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01433</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30190">
        <property type="protein sequence ID" value="CDD30190"/>
        <property type="gene ID" value="BN815_01433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="95"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="34335" checksum="8056C13BCE12C486" modified="2013-07-24" version="1">MAYYYIRKVAGFLVTLFLVSILTFAVFQILPGDPALVILGVDADPMQIEQLHQEMGIDQPIHIRFLSWIGGVLQGDLGTSYRYHQPVSDLIGNAFGVTTQLAVFSLVLTAVVGIPVGIWLAHHSKKPYALPVSLLSQLGLSVPAFCFSVLLINIFSVQLKWLPSMGYTPFTQDPIACLKSLALPSVAIAFGSAAVLIRYVKVSVMEQERQDYVKTAQSKGVPSKKILRGHVLRNSLIPVLTIFGMTITDVLGGSIIIENVFSLPGIGRLISSSINSRDLPLIQGLVLYLAMIVVLCNFVVDVLYSVIDPRIRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8V7</accession>
    <name>R6Y8V7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA-dihydrouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00704</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27724">
        <property type="protein sequence ID" value="CDD27724"/>
        <property type="gene ID" value="BN815_00704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024036">
        <property type="entry name" value="tRNA-dHydroUridine_Synthase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dus" evidence="1">
        <location>
            <begin position="2"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="13075" checksum="EAC7E722C27C450C" modified="2013-07-24" version="1">MVLVGRGAMGNPWVFRQINAYLRDSCTILPPPGIAERIVVIRRHMDALCVLKGEQRAMREARKHVGWYLHGVRGAAQFRRRAGELSTLEDLDRLLGDVYAAAQQERDTMEKECLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9H8</accession>
    <name>R6Y9H8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spermine/spermidine acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01753</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30540">
        <property type="protein sequence ID" value="CDD30540"/>
        <property type="gene ID" value="BN815_01753"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="17128" checksum="BD53B5C944A2E245" modified="2013-07-24" version="1">MLEFREIDRHNFRDILKLSTTESQKFFVATNAYSLSQAYAQPECVPLALYEGDTPVGFTMYGLDVEDTEYWIYRLMIDQRHQSKGYGRQALAMVLERIRQDKAHHRVYLSCNPDNAWGRALYESVGFRPDGRMVHGEIVYQLVWEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9T0</accession>
    <name>R6Y9T0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01872</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000296">
        <property type="protein sequence ID" value="CDD30665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30665">
        <property type="protein sequence ID" value="CDD30665"/>
        <property type="gene ID" value="BN815_01872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="51" mass="5221" checksum="A15997DE326E00DD" modified="2013-07-24" version="1">MPNTAPATSFTPSRSSKSGSAPGWETRMGRASSLVAKNTATKVPGVMSRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9U5</accession>
    <name>R6Y9U5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative adenylate kinase DNA topology modulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000303">
        <property type="protein sequence ID" value="CDD30680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30680">
        <property type="protein sequence ID" value="CDD30680"/>
        <property type="gene ID" value="BN815_01885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="20373" checksum="5DC0B5CC5DFFCA7E" modified="2013-07-24" version="1">MERILVIGSPGSGKSTFSRALAQRKQLPLVYLDRLFWNADKTTVDQAQFDQRLGEAMARTQAWILDGNYGRTLEMRLERCTQVFFLDLPVEVCLESVRARRGTVRPDMPWVETEEDPEFMEYIQTFPQQQRPKILELREKYGEKPWVVLRSRGQMDAYLRGLDAGMAEVKREQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA78</accession>
    <name>R6YA78_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02017</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30830">
        <property type="protein sequence ID" value="CDD30830"/>
        <property type="gene ID" value="BN815_02017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="5">
        <location>
            <begin position="139"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="27570" checksum="0B0B07A4B927705D" modified="2013-07-24" version="1">MHLHPQLELFLVLTGSSSVTVRGQTQVLGPGALALIFPNQVHSYTALEPGTGAVLVVCDLSYTGGYADTLLRSHPEDPFLSGEKLHPNVPYAIQELEREARLQRESPVFGPLIQLVLARALPQLSLAKNSAADRRELTYQISQYVGEHFREPLTLGTLARELGMNKYHLSHVFSEKMGQSFPAYLSRIRISCACSALAETDRSVTQIAEECGFESQRSFFRVFQQQLGTTPLQYRKNARSPEASPGRGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAK7</accession>
    <name>R6YAK7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02109</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000350">
        <property type="protein sequence ID" value="CDD30950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30950">
        <property type="protein sequence ID" value="CDD30950"/>
        <property type="gene ID" value="BN815_02109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="202"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="266"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="67"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="33083" checksum="BD801DB4DA3FC511" modified="2013-07-24" version="1">MDRNSKKAWLYLLPALVLLGLFLIYPLVDVLIYSVEECYNFASQTYQGVGLYNYSYVLHDPYFLQAVENTFVLVIITVPTSTVLAIVIATALSSIKPLRQLFQTIYFLPYVTNTLAVGLVFMVLFQRTEYTDGLINLMLAWFGAGPIDFINGPHWAKMFVLCFYTIWVVLPFKILVLTSALASVNDEYYKAARVDGTSRTRTFFRITLPMISPMIVYLVITGFIGAFKAYSDAVALFGTDLNAAGMNTIVGYVYDMLYGDSGGYPSYASAAAIILFVIVLTITCINLLVTRKRATD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAP4</accession>
    <name>R6YAP4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Malic enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02149</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="5">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="5">Divalent metal cations. Prefers magnesium or manganese.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the malic enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30990">
        <property type="protein sequence ID" value="CDD30990"/>
        <property type="gene ID" value="BN815_02149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015884">
        <property type="entry name" value="Malic_enzyme_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001891">
        <property type="entry name" value="Malic_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000106">
        <property type="entry name" value="ME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00331">
        <property type="entry name" value="MALIC_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="malic" evidence="7">
        <location>
            <begin position="15"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="6">
        <location>
            <begin position="160"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000106-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="390" mass="41141" checksum="8D2D3FE07293C0C9" modified="2013-07-24" version="1">MDYAQKALEMHRQWKGKIRVNTPCVPENKEDLSVAYTPGVAAPCLEIQKDVDKSYEYTRRGNLVAVVTDGTAVLGLGDIGPEAGMPVMEGKCALFQAFAGIDAFPLCVRSKDVDEIVHTIEMIAGSFGGINLEDIGAPRCFEVERKLKERLDIPVFHDDQHGTAVITVSAMLNALKLVGKDIGEVSAVVNGAGAAGTACTKLLMALGLKNVVVCDKMGALVPGLPGMTPAQAQLAEETNPQRKSGSLVEVIQGADVFMGFSAPGVLTGDMVKTMAQDAIVFACANPTPEIFPEEAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALDVRAREINDEMKLAAAKALAALIPQEELSEENIIPSAFDKRVVPAIAAAVAQAARDTGVARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAY3</accession>
    <name>R6YAY3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02194</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31040">
        <property type="protein sequence ID" value="CDD31040"/>
        <property type="gene ID" value="BN815_02194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="3"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="7">
        <location>
            <begin position="145"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="145"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="244" mass="27732" checksum="9D0BF9466FDFDC62" modified="2013-07-24" version="1">MRKILVAEDEQNIREFVVINLERAGYKTYEAETGDQALALYAQEDGDFDVAVLDIMMPGEHDGLAVCKELRRRNPSIGIILLSARTQEMDKVSGLMMGADDYVTKPFSPSELVARVDAVYRRVALAAGRREGGARDERRREAGARDELTSGEFTLNLRNRSFLKGKRPIELTQVEFQIMEYFFSHPGVALARGDILKHVWGAGYTGEEKIVDVNIRRLRMKVEEEPSNPRHIVTVWGLGYRWDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB80</accession>
    <name>R6YB80_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative N-acetylmuramoyl-L-alanine amidase CwlD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02299</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31155">
        <property type="protein sequence ID" value="CDD31155"/>
        <property type="gene ID" value="BN815_02299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02696">
        <property type="entry name" value="MurNAc-LAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002508">
        <property type="entry name" value="MurNAc-LAA_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01520">
        <property type="entry name" value="Amidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00646">
        <property type="entry name" value="Ami_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425383" evidence="1">
        <location>
            <begin position="26"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="MurNAc-LAA" evidence="2">
        <location>
            <begin position="115"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="25901" checksum="3B374FDA2231D780" modified="2013-07-24" version="1">MRRKLLFWVLFCASLVLFCAQTIQAFGIVAFHAEFFEKKPTIVVDAGHGGEDGGAVGVNGLVEKDVNLAIALALAEDLKAANFPVVLVREGDYSVGDQSLGTIAERKRSDTKSRAQLVEETGECVLISIHQNKFEQSQYSGAQMFYSPNNPESAALAECIRQSVVGSLQPQNTRQNKEAGEDIYLLSHVQVPAVLVECGFLSNPEEAALLGQESYQRDMAAAIYNGLISFLEQREGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBB6</accession>
    <name>R6YBB6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ppx/GppA phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02354</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31210">
        <property type="protein sequence ID" value="CDD31210"/>
        <property type="gene ID" value="BN815_02354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003695">
        <property type="entry name" value="Ppx_GppA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02541">
        <property type="entry name" value="Ppx-GppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ppx-GppA" evidence="1">
        <location>
            <begin position="25"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="516" mass="57704" checksum="E49B41A3080CB157" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBC3</accession>
    <name>R6YBC3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Segregation and condensation protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02364</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31220">
        <property type="protein sequence ID" value="CDD31220"/>
        <property type="gene ID" value="BN815_02364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051304">
        <property type="term" value="P:chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005234">
        <property type="entry name" value="ScpB_csome_segregation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34298">
        <property type="entry name" value="PTHR34298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04079">
        <property type="entry name" value="SMC_ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019345">
        <property type="entry name" value="ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00281">
        <property type="entry name" value="TIGR00281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="155"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="178" mass="19420" checksum="273AC0A1EC987AB7" modified="2013-07-24" version="1">MGKTEAILFAGGEPVSLDRIAQVLGVRTPVIDSIVSALQEKYNTPSSGIQLMRLGDSAQFCTNPAYVEPVREVLDLKRGTPLSQAAMEVLAVVAYNQPVTKAFVEQVRGVDCSGVLSSLMQKDLLEERGRLELPGRPLLYGTTETFLRCFQLSSIEDLPPPPQRGEEGLPEEEGQLTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBE7</accession>
    <name>R6YBE7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M50 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02389</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000387">
        <property type="protein sequence ID" value="CDD31245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31245">
        <property type="protein sequence ID" value="CDD31245"/>
        <property type="gene ID" value="BN815_02389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="200" mass="21208" checksum="45E3EB4E6E13D0EF" modified="2013-07-24" version="1">MVAFPLGSCQVRLGFSCFALLSFCCLFLGADGSAFFLAAAACHEAAHVAMLFWLKAPPATVQVTALGCRIIPNREKLLSYRQMAAVSLAGPGMNWLLAGALALLGQGESYFAGANLVLGALHSLPIEPLDGGMALHSLLCVRMKASTAARVSTALSAACLLPLAALGFAILLRTRYNFTLLAMSLYLMLYLVLKRDFFTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBI8</accession>
    <name>R6YBI8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00228</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31290">
        <property type="protein sequence ID" value="CDD31290"/>
        <property type="gene ID" value="BN815_00228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004682">
        <property type="entry name" value="TRAP_DctP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006470">
        <property type="entry name" value="DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437575" evidence="2">
        <location>
            <begin position="29"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="343" mass="37971" checksum="1BB6FDDC70F622B0" modified="2013-07-24" version="1">MKNVKRAAALALCGLLVLGSLFGCSASATDGLQIIRIGHNQSTNHPTHTGLLAFEEYVEGELGDKYDIQIFPSELLGSQNEMVQLTQTGAITFCVASNSLLETFSDNYTLFNLPYLFASPEAYHASMDDPAIVDPIFESTMQAGFEAVTWLDAGTRNFYTINTPIETPADLRGLKIRVQQSPTNVRMMELLGGSATPMGFGDVYTALQSQMLDGAENNELALTDNGHGDVCKYYSYTMHQMIPDILIGNLDFMESLSEEERAIFDEGFQILNQTQRDAWETAVEEAKNTAENEQGVTFLYPDIIPFQEAVAPMHEEMLENYPDLAPIYELIQAHNAEYPADSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC21</accession>
    <name>R6YC21_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00981</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28839">
        <property type="protein sequence ID" value="CDD28839"/>
        <property type="gene ID" value="BN815_00981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="200"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="242"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="291"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="323"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="395"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="424"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="457" mass="49633" checksum="BE18D5323F01430D" modified="2013-07-24" version="1">MEDAQKTELFESMPIPRAVMKLAIPTVLSSLVMVLYNLADTYFVGMLNNAVENAAVTLAAPLLLAFNAVNNLFGVGSSSMMSRSLGKKDYETVYRSAAFGFYCSIFAGLLFSIAYTVFQVPLLNLLGATEETLGATIGYARWTVTFGAVPAILNVVLAYLVRAEGAAMHASIGTMSGCFLNILLDPIFILPWGLNMGAEGAGLATFLSNCVACLYFFVLLYVKRGRTYVCVNPKMFSFKRHIVVGVCAVGIPASIQNLLNVTGMSVLNNFTSAFGSNAVAAMGIAQKINSVTVQIALGLSQGIMPLISYNYASGNIKRMKKTFFFTARIALVFLVLMEIAYYAGARTWVGLFMQDQQIVDYGARFLQGFCLGMPFLAIDFLAVGVFQACGLGKNAFLFAILRKVVLEIPALFILNALFPLYGLAYAQFAAELVLAIAAVIVLARLFRRLERRYQPKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEI1</accession>
    <name>R6YEI1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01247</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000172">
        <property type="protein sequence ID" value="CDD29719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29719">
        <property type="protein sequence ID" value="CDD29719"/>
        <property type="gene ID" value="BN815_01247"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425461" evidence="2">
        <location>
            <begin position="27"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="21105" checksum="5984F84B6F5FA400" modified="2013-07-24" version="1">MKKRMLALALCAALLVGASACSQTEADSSSQVSTPSVSVVESEPSPTPEPTPAPTATPAPTPEPESSAAPAEGFEAEFAANPIDQRLEEDLMMASSSSLVLQAYDTAAGFWQDVIDTAYAQAEEALSTDEYAVVQQEQGDWEAALEPAVQEIRAQHGEDEMAAASAVVDFYKERAKSLCQSIYNATGALPQFPNTSGEAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEL1</accession>
    <name>R6YEL1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Triosephosphate isomerase</fullName>
            <shortName evidence="3">TIM</shortName>
            <shortName evidence="3">TPI</shortName>
            <ecNumber evidence="3 4">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tpiA</name>
        <name evidence="5" type="ORF">BN815_01256</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="3 4"/>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29764">
        <property type="protein sequence ID" value="CDD29764"/>
        <property type="gene ID" value="BN815_01256"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="PTHR21139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="SSF51351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3 4" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3 4" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="13"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="237"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="active site" description="Electrophile" evidence="3">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="170"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="26664" checksum="A3B7AA5791E9B6D0" modified="2013-07-24" version="1">MNKALRKVVIAGNWKMNKTPAEAKELIAAIAPLVKDADCDVVACTPFVDLASAQEAAAGTNIQIGAENCHWEKSGAYTGEISAEMLSSMGVNIVIIGHSERRQYFGETDVTVQKRVRAALDAGLTVILCVGETLEQREQGITSELVSMQTKIALGGVSEEELKRVIIAYEPVWAIGTGKTATAQQANEVCHTIRECIASVYSQAAADGITIQYGGSMNAGNAAELLAQPDVDGGLIGGASLKPNDFATIVAAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YES1</accession>
    <name>R6YES1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29844">
        <property type="protein sequence ID" value="CDD29844"/>
        <property type="gene ID" value="BN815_00104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="27143" checksum="997F86520E59262E" modified="2013-07-24" version="1">MDPRLQHIAENLDNITIGPDEPFQFHCTQCGKCCINREDILLNPQDLFRIAKHLEQTPQDVVEYFCEVYTGSDSRMPIVRLLPEGPTKRCPFLVRNKCRIHEAKPAVCAMFPLGRTHGFDLETGKPLPEILYILDKPHCGDDSETHTVREWLGSFHIPVDDPFYLEWSEALISFTQAFRKLEEINPAATAVLIRPAVYEHLYLAYNTSQDFLPQFQENLGKTREFFQILLHALED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF42</accession>
    <name>R6YF42_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000184">
        <property type="protein sequence ID" value="CDD29964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29964">
        <property type="protein sequence ID" value="CDD29964"/>
        <property type="gene ID" value="BN815_01324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018711">
        <property type="entry name" value="NAGPA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09992">
        <property type="entry name" value="NAGPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425470" evidence="1">
        <location>
            <begin position="29"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="27"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="91"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="157"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="550" mass="59919" checksum="62442748052C9802" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGM8</accession>
    <name>R6YGM8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000267">
        <property type="protein sequence ID" value="CDD30504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30504">
        <property type="protein sequence ID" value="CDD30504"/>
        <property type="gene ID" value="BN815_01720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="258" mass="28569" checksum="3CE05C0AE1E735EF" modified="2013-07-24" version="1">MTEELWMELACSLGKNLLIIGIGVLLCFIASRLRFNLDSVPSLYMLFSFVLLTCQYGGALFYQATSGSGNLGDGFQLMEPATWNTKHWIMMVGGGVILLGLVLYALAKRHFEWLLVLVGLALMEYSLMELILVLFSEGDGFFVEVIWWAISSAYNLYVTVICVACVFGPFLPRIGGGGTPGAQEVGAQEDGQGGLENSYDLSRMPNIIYDSSNNRWQKGWTSYDHVTYRNDGGEEVTIWHAEISGNGAQTSAGHFHWY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGP4</accession>
    <name>R6YGP4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amidohydrolase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01732</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30519">
        <property type="protein sequence ID" value="CDD30519"/>
        <property type="gene ID" value="BN815_01732"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032465">
        <property type="entry name" value="ACMSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21240">
        <property type="entry name" value="PTHR21240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="5"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="29296" checksum="90F217A74D74A201" modified="2013-07-24" version="1">MKFFDTHVHFFPDKLADKALPKLREISQCETHSDGTRSGTVKNFAEWGCAGGMVLHIATNAHQQTSVNNFAKESQHGNLYCFGSVYPYAENALEEMVRIKEMGLYGIKLHPDYQEFFIGDEGALPIYAQAEKLGLPIAFHAGRDPLSPNLIHCPADVLGKIADLFPRLTIIAAHMGGMDTPQEAAKHLAGKKNVYFDTAFASHFLDAASFTQLVKLHGADKVLFATDCPWSTLPAEKALLEAADLSPSEKERIAYRNAEELFGVTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGT0</accession>
    <name>R6YGT0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Xanthosine triphosphate pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01767</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30554">
        <property type="protein sequence ID" value="CDD30554"/>
        <property type="gene ID" value="BN815_01767"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="46"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="19686" checksum="A61397A9A081F6DE" modified="2013-07-24" version="1">MRGKNKPFLVKVLSVCYTYTSKRKACRLAGGKGEETVECRTFALEELTSPKYVVVFTRYRGKLLLSRHRQRDTWETQGGHIEPGETPEQAARRELWEESGAGEFTLIPLCGYRAGDETGSAAGAVFVAQVEALGPLPPLEMAETALFSALPRELTYPGITPVLWRRAREYFPGMGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHG4</accession>
    <name>R6YHG4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glucokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000073">
        <property type="protein sequence ID" value="CDD27966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27966">
        <property type="protein sequence ID" value="CDD27966"/>
        <property type="gene ID" value="BN815_00735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000600">
        <property type="entry name" value="ROK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18964">
        <property type="entry name" value="PTHR18964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00480">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01125">
        <property type="entry name" value="ROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="318" mass="33320" checksum="8871D8E65BEF2C65" modified="2013-07-24" version="1">MYYLGIDLGGTNIAVGVVDENNAIIARATSKTKVDSPEQVADAMAETARAALANAGLTLDDVPWVGLGSPGTINKATGIIEFANNLPFSNTPMEQMLSQRLDGKKVLMENDANAAAYGEYMAGALKGADNAVAITLGTGVGGGIIIDHKIYSGSNFAGAELGHTVIVVDGRPCTCGRLGCWETYASATGLIKTTKEHMEKAPKDSALWTIVGGDMDKVNGRTAFDAMRQGDPVGKEIVDEYVKYLSVGIIDMINIFQPDILCIGGGISNEGETLLAPVRAYVEADQYARNTSKKTVVCRAQLGNDAGIIGAALLGKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIZ4</accession>
    <name>R6YIZ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sigma-70 region 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00325</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31394">
        <property type="protein sequence ID" value="CDD31394"/>
        <property type="gene ID" value="BN815_00325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="8"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="100"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="18495" checksum="94E6906EE002CC11" modified="2013-07-24" version="1">MDDFERIYAEYYDQVYGYCLRLTHDPHMAEEVTQESFFKALKAISSFHGECRLQVWLCQIAKNTYFSLLKKQKRSAPLEGDWPAPADLEERLGDKEDALKIHQVLHRLEEPYREVFWLRAFGELSFAQIGGLFEKTESWARVTYHRARMKIKEALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ36</accession>
    <name>R6YJ36_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease P protein component</fullName>
            <shortName evidence="6">RNase P protein</shortName>
            <shortName evidence="6">RNaseP protein</shortName>
            <ecNumber evidence="6">3.1.26.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Protein C5</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnpA</name>
        <name evidence="7" type="ORF">BN815_00866</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.</text>
            <dbReference type="EC" id="3.1.26.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RnpA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.5" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28526">
        <property type="protein sequence ID" value="CDD28526"/>
        <property type="gene ID" value="BN815_00866"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004526">
        <property type="term" value="F:ribonuclease P activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001682">
        <property type="term" value="P:tRNA 5'-leader removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00227">
        <property type="entry name" value="RNase_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000100">
        <property type="entry name" value="RNase_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020539">
        <property type="entry name" value="RNase_P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33992">
        <property type="entry name" value="PTHR33992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00825">
        <property type="entry name" value="Ribonuclease_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00188">
        <property type="entry name" value="rnpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00648">
        <property type="entry name" value="RIBONUCLEASE_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0819">tRNA processing</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="13205" checksum="55907E4F63C80496" modified="2013-07-24" version="1">MEKLVPICRNNDFRRIYARGKSYVSPLVVVYALKNRTKNVRVGITTSKKVGNAVQRNRSRRVIREAFRALAPRVRPGFDLVLVARGKTPYVKSTDVRRQLERQLQAAGLLREETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJC4</accession>
    <name>R6YJC4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplF</name>
        <name evidence="7" type="ORF">BN815_00380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31504">
        <property type="protein sequence ID" value="CDD31504"/>
        <property type="gene ID" value="BN815_00380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_B">
        <property type="entry name" value="Ribosomal_L6_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_L6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_L6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_L6_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019906">
        <property type="entry name" value="Ribosomal_L6_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002358">
        <property type="entry name" value="Ribosomal_L6_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="PTHR11655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF14">
        <property type="entry name" value="PTHR11655:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00059">
        <property type="entry name" value="RIBOSOMALL6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="SSF56053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03654">
        <property type="entry name" value="L6_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00525">
        <property type="entry name" value="RIBOSOMAL_L6_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="11"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L6" evidence="6">
        <location>
            <begin position="91"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="19683" checksum="6D0F1D6C0F7B6805" modified="2013-07-24" version="1">MSRIGRKPINIPAGVEVNVNGSEVTVKGPKGTLAQSFNPKMSIAVEGSDILVTRPDDEKESRSLHGLTRTLIHNMVVGVTEGFSKTLEVQGVGYRVQKQGKDLVMNLGYSHQVIVSENEDIKIDAPNANTIVISGIDKQKVGQFAAEVREKRPPEPYKGKGIRYAGEFVRRKEGKAGKGSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJU9</accession>
    <name>R6YJU9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Citrate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00973</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the citrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28831">
        <property type="protein sequence ID" value="CDD28831"/>
        <property type="gene ID" value="BN815_00973"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="449" mass="50830" checksum="9A0E913B248C7F66" modified="2013-07-24" version="1">MSIYSEIKPEVRMFADMCVENSRIDPELYLKYDVKRGLRDLNGKGVLTGLTNISEIISSKTVDGKSVPCEGELYYRGYSVEELVRRQLAGDHFGYERTAYLLLFGELPDEEHFKTFCELLSFYRTLPTSFVRDIIMKAPSSDMMNTLARSVLTLYSYDEDAEDISIPNVLRQSMQLIALFPLLSVYGYQAYRHYHDGQSLFIHQPDPKLSTAENILRILRPDCSYTELEARVLDIALILHADHGGGNNSTFTTHVVTSSGTDTYSAIAAALGSLKGPKHGGANIKVVKMFEDIKEHVKDWNDDEELTAYLRKLLHKEAFDKAGLIYGMGHAVYSLSDPRAKIMARFVEGLSKEKGRTDEYQLYANVERLATQLIAQERKIYKGVSANVDFYSGFIYSMLDLPMELYTPIFAIARIAGWSAHRMEELIGGGKIIRPAYMAVQPHRDFPQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKQ6</accession>
    <name>R6YKQ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01073</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000126">
        <property type="protein sequence ID" value="CDD29156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29156">
        <property type="protein sequence ID" value="CDD29156"/>
        <property type="gene ID" value="BN815_01073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="18928" checksum="037A236E1FB48D24" modified="2013-07-24" version="1">MDRFAEALLSQQANSALPLEDDWFAPLLGDWEFDYQDRGGRRLQGEWYFRRALDGMAIEDLFICPSRDTREENPQPDGEYGAAVRMYNPKRRCYDMTYICSKGTTRLEVRKEGGVIACTVLEEPSNQWRFVEVTEDTFHWQNVTKQAEGLQVNCEVFARRIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM36</accession>
    <name>R6YM36_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29651">
        <property type="protein sequence ID" value="CDD29651"/>
        <property type="gene ID" value="BN815_00098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="434" mass="46727" checksum="C25D9A1EE0929794" modified="2013-07-24" version="1">MKKGMLIVTDLAIALLCAAGLFLTLLEDRFRLWATVACYGAAYLLSLGVGWIAARLAGPSWAVAAGALVLFGASLFLSRNNPLQKFYLVLLTLACHFYLEAFLPPALGAMPFPVAGAFAAVFSLAAQLALAALVGLCFYRPFHHFSDRGPSAFLWGMCLVTLALCAVGNGKVDFLFRLHIPAQRLLVATLLFAAVIFVFRSVYQAGRFRQGATEDSLRAQMLTLKAGDYTDTLAAVQAAKAAQKAGEYALDTVSVMVQDGNQALVPRYAAIYKQNNAKSPLAGLYSQNPYVNGVIAAKAAFAAQNSVSFESNAFTGETPLTTVELCVLISEMLTRACGEAAAYEGERRVRFTAQPGENSLTMEAVYSGQLPQKETFSLKGKTLSQVLGWLFDENTGEDDFHGLENARDIVERYSGSLSLSGAPGEVILRMSLRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM67</accession>
    <name>R6YM67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Addiction module antitoxin RelB/DinJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RelB/DinJ antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29701">
        <property type="protein sequence ID" value="CDD29701"/>
        <property type="gene ID" value="BN815_01229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007337">
        <property type="entry name" value="RelB/DinJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04221">
        <property type="entry name" value="RelB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02384">
        <property type="entry name" value="RelB_DinJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9603" checksum="41B3EFD61DBBDE9F" modified="2013-07-24" version="1">MAQTTLSVRMDDSLKSDFDKVCNELGLSMTTAITMLAKKMTREKRLPFEVSVDPFYSEENLARLRRSIAQMESTGGTVHEVDLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNX0</accession>
    <name>R6YNX0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glutaminyl-tRNA synthetase</fullName>
            <shortName evidence="8">GlnRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glnS</name>
        <name evidence="12" type="ORF">BN815_01550</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln)</text>
            <dbReference type="Rhea" id="RHEA:20121"/>
            <dbReference type="Rhea" id="RHEA-COMP:9662"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.18"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.18" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30316">
        <property type="protein sequence ID" value="CDD30316"/>
        <property type="gene ID" value="BN815_01550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004819">
        <property type="term" value="F:glutamine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006425">
        <property type="term" value="P:glutaminyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00126">
        <property type="entry name" value="Gln_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004514">
        <property type="entry name" value="Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022861">
        <property type="entry name" value="Gln_tRNA_ligase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020059">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_codon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03950">
        <property type="entry name" value="tRNA-synt_1c_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00440">
        <property type="entry name" value="glnS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="10">
        <location>
            <begin position="34"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1c_C" evidence="11">
        <location>
            <begin position="346"/>
            <end position="537"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="41"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="274"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="42"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="48"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="267"/>
            <end position="268"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="275"/>
            <end position="277"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="562" mass="64665" checksum="0BD8FD5BA5072569" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP37</accession>
    <name>R6YP37_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30371">
        <property type="protein sequence ID" value="CDD30371"/>
        <property type="gene ID" value="BN815_00130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="9790" checksum="ACB0FBC7E87816D7" modified="2013-07-24" version="1">MSDFEVLQTYASWAGTAVPDKLPGIPFANLDVFEDESSLRNRLFYLVPDTSSGELRCFFYFEDNLFAKETNGDLILLESSLHLFTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPG4</accession>
    <name>R6YPG4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative helicase-exonuclease AddAB AddB subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000254">
        <property type="protein sequence ID" value="CDD30471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30471">
        <property type="protein sequence ID" value="CDD30471"/>
        <property type="gene ID" value="BN815_01688"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDDEXK_1" evidence="1">
        <location>
            <begin position="2"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="176" mass="19092" checksum="F60D9FAEEBC51791" modified="2013-07-24" version="1">MQMLVYLAALVEHSPEAPAGILYMPAAEPSVSVERGAGEEKIKEEADKQLKMSGVILSDQEIIQAMEAGARGKFIPASLNKDGSLGRYSSTLDREGLQTVLAYVKRVVATMGEALLEGRVEAAPHLKNRSACRYCPYSPVCGKEFTAKDVELDKTTPQQALEKMRETLEKGGNPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ01</accession>
    <name>R6YQ01_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01878</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000299">
        <property type="protein sequence ID" value="CDD30671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30671">
        <property type="protein sequence ID" value="CDD30671"/>
        <property type="gene ID" value="BN815_01878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="218" mass="23482" checksum="01654D79846837AA" modified="2013-07-24" version="1">MNLPLPSGSSPPEKPPGSMTIWARRMAFSMRSMVSSMSETDRFFTTRISHWAPAFSKARAESTSQLVPGKAGMNTRGRATLMAGALFSRFSHRGTSAVTGTGWALLGKIFSKVPIQAAHSSSREMRSPPSFTSSLLEVRPRITGDRAASVERSASLESSTTKAPSWGAYRVSLDRPSAKRKPVLLPKHIRSTAAAAPPSRTTLAEMMSPHSMCSSTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ09</accession>
    <name>R6YQ09_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01886</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000305">
        <property type="protein sequence ID" value="CDD30681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30681">
        <property type="protein sequence ID" value="CDD30681"/>
        <property type="gene ID" value="BN815_01886"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="8050" checksum="CB463E87E196B724" modified="2013-07-24" version="1">MCERPYLCDEEKCVVLELERACYNEMERESMEYFYAAEKELQRQRERIRQLENILTENGIPVLEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ55</accession>
    <name>R6YQ55_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glycerol-3-phosphate dehydrogenase [NAD(P)+]</fullName>
            <ecNumber evidence="7">1.1.1.94</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">NAD(P)H-dependent glycerol-3-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gpsA</name>
        <name evidence="15" type="ORF">BN815_01931</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>NAD(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:11092"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 11">
            <text>NADP(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 12">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 10">Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.94" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30726">
        <property type="protein sequence ID" value="CDD30726"/>
        <property type="gene ID" value="BN815_01931"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004367">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase [NAD+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046167">
        <property type="term" value="P:glycerol-3-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046168">
        <property type="term" value="P:glycerol-3-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006650">
        <property type="term" value="P:glycerophospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00394">
        <property type="entry name" value="NAD_Glyc3P_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006168">
        <property type="entry name" value="G3P_DH_NAD-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006109">
        <property type="entry name" value="G3P_DH_NAD-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011128">
        <property type="entry name" value="G3P_DH_NAD-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07479">
        <property type="entry name" value="NAD_Gly3P_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01210">
        <property type="entry name" value="NAD_Gly3P_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000114">
        <property type="entry name" value="Glycerol-3-P_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00077">
        <property type="entry name" value="GPDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00957">
        <property type="entry name" value="NAD_G3PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 9 10" id="KW-0520">NAD</keyword>
    <keyword evidence="3 7 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 7 12" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_Gly3P_dh_N" evidence="13">
        <location>
            <begin position="19"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_Gly3P_dh_C" evidence="14">
        <location>
            <begin position="191"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="23"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000114-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000114-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF07479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="335" mass="36224" checksum="CC30426DD62C4047" modified="2013-07-24" version="1">MTIQQEHWNTPAQGGNRRISVIGCGRWGTFLAWYLERSGQQVCLYGREGSPRMDALVATRTNGVTTLPESVRLTHSLAEALERDTVVISVGAQGLRGLLREIAALCPGGEGKRLVLCMKGLEAGTGKRLTTLVEEELPQARAAVWLGPGHVQEFTAGIPNCMVIDSKDEALKEELVAAFSSELIRFYYGRDLIGNEIGGASKNVIGIAAGMLDGLGLSSLKGALMSRGTREIARLIKALGGNELSAYGLCHLGDYEATVFSPYSHNRRFGEAFVTGEPYGELAEGYATVKALVKLGEDRWVALPICQAVYQVLYQGADPRATLDGLFSRSLKQEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ67</accession>
    <name>R6YQ67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01940</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30736">
        <property type="protein sequence ID" value="CDD30736"/>
        <property type="gene ID" value="BN815_01940"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="362" mass="34975" checksum="7DB34D211D636B9A" modified="2013-07-24" version="1">MAHAHKGGGGAIVQGGGGAPQGQAVAQGVVLQNGVAQVGPAAIQFRPLEAVLPGLVHRLLLVVGRGGDRHGVLNGLAAVDHRPAVLVPVHGCNHGLAAHVVQHELGGPDAVEHNPPLAVLVLHQVGVAQALGNARAGIDIPVGEDGVAGAALKGAPGGVAAGDGLHVAVLRAALGNHQVVLAVDFVHVGTLGALAAGAVPDGPGLGAHLAGFQVHHALADALAVDVPKGALEVDGAVVVPEERGVNAALLDGDGLGPGAADVIGPHKEVAAGADVGGDHVKPPVVVADGGGENAAGGPAALQGVLAGAGEHVAQLLPVEQIAAVPQGHPGEELKGAVHQVVVLAHPADAGVGVKTGEDGVFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQD6</accession>
    <name>R6YQD6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02005</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30801">
        <property type="protein sequence ID" value="CDD30801"/>
        <property type="gene ID" value="BN815_02005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="342" mass="33929" checksum="DF058766B182F6ED" modified="2013-07-24" version="1">MALLGGGGHRRAGDSAGAVGVDSLLAPLAPQLLLKGGLQAGAAHGVAPLVAGDVILGVVGVALLHGLLVLGVGDDAGVAHHVGGQRAVLPVGAGDSHPGLDAGPLAGVLADDAHGLGGDILGDDVGAGAGKAVLGHGVAHGHHVPGVLPGVALAVVPAGQGAHAVLGGGVLGQLQRLLQGGDGAFAVLGVLIGAVLRQDNGQPIPPRLAPLHEQVQHLEDGCVAGTVVHVQRVVYNVIAGAVARQHVAVPVQNLPPGRLYLDGIGAVGKGDLLELVAPKHLPLEQAELIHCKHRQHQQDAGGGTAEFSDFRHFQRGEASFPAGDMSQPAFLLGPQRLGEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQI0</accession>
    <name>R6YQI0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02023</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000330">
        <property type="protein sequence ID" value="CDD30836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30836">
        <property type="protein sequence ID" value="CDD30836"/>
        <property type="gene ID" value="BN815_02023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="24793" checksum="219A993FE6D9CC1D" modified="2013-07-24" version="1">MYGAGGKRKQHHPRCDLEAASHLFLPHFDRHLLPAAVQHGGHHCGGAVCGHQRPGGGGHHRHPHQPAGGLLCGGVLRRHGDYLPILRRGGRQKRLQGGAHLHCLGLGGRACHHGAGAADGPALFGAAGRARGDTGRRLDLHERVLLRHHRQHDIQRGHRRAAGHWRQPHAPVRAHCLLPGEHCAGPALCAGLPLGRVRRGHCHGALPGGQRGAYHGAADAHPGELPGGAQTHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQP3</accession>
    <name>R6YQP3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000337">
        <property type="protein sequence ID" value="CDD30891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30891">
        <property type="protein sequence ID" value="CDD30891"/>
        <property type="gene ID" value="BN815_02053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="6647" checksum="A15C30A2D325DA30" modified="2013-07-24" version="1">MQTNMQHTPTRDHAAAVPLGDFDVVEDGNTLVNRLYYAFCIPSSALSSIFAWVSLYIKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR63</accession>
    <name>R6YR63_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31021">
        <property type="protein sequence ID" value="CDD31021"/>
        <property type="gene ID" value="BN815_02175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="21"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="261" mass="29741" checksum="181B65214159A717" modified="2013-07-24" version="1">MVGITTVNGFPSLMSERFSLFKAAGFESVLLWWGPGEKESRGERVALAKRYGLRIENVHATTDNLNAIWLNDSAGNQTLAELEQELEECSYFGIGTLVVHLTNGSVPPPVSKIGISRIERLIYSAEKNGVRIAFENLRTPEHVQYVLNHYSSRFVGLCYDSGHEHFWTPNFDWLKEYGSRVFAIHLHDNCGEKDSHLVPFDGEIDWRQKSKQIADSSYTGSITIESEYNVSAQYRRYELTDFLSYTCEKGKLLETMIQAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR98</accession>
    <name>R6YR98_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative peptidase propeptide and YPEB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02229</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31076">
        <property type="protein sequence ID" value="CDD31076"/>
        <property type="gene ID" value="BN815_02229"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025711">
        <property type="entry name" value="PepSY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03413">
        <property type="entry name" value="PepSY"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425798" evidence="2">
        <location>
            <begin position="32"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="3">
        <location>
            <begin position="26"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="3">
        <location>
            <begin position="139"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="3">
        <location>
            <begin position="233"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="205"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="299" mass="32230" checksum="6906D79610E0E023" modified="2013-07-24" version="1">MKKNNLWKLAGALALTAVLAGCSSSISQEEATTIALEHAGVAKEDAVSLSVQQEHEDGRDIFEVKFSTQDTEYSYDVAQKDGEIINYNYDSTGTPPAGASEGSSASGTEAQAVQEEIDKAQQDQSAAESQAQAVEDAVDEATAINAALEHAGVTECYMHRVELDTEDGREVYEIEFFSGNTEYDYTVARDTGEILSYDQDIEGWGLGQGNGQGNGNGRQNGQGNSTSSTAAGPITLEEAVQLVLDRVPAASSEDVRIQLEEEDGRQVYEGEVICNRAEHEFEIDAATGDFIQWSVDYQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRE4</accession>
    <name>R6YRE4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methionine synthase</fullName>
            <ecNumber evidence="6">2.1.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="24" type="ORF">BN815_02295</name>
    </gene>
    <organism evidence="24 25">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="24 25" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="17">Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:11172"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="2.1.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 19">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetH route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the vitamin-B12 dependent methionine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="24">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.13" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31151">
        <property type="protein sequence ID" value="CDD31151"/>
        <property type="gene ID" value="BN815_02295"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008705">
        <property type="term" value="F:methionine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042558">
        <property type="term" value="P:pteridine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003759">
        <property type="entry name" value="Cbl-bd_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="SSF47644"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="16" id="KW-0170">Cobalt</keyword>
    <keyword evidence="13 19" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="8 19 24" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="25" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="11 19 24" id="KW-0808">Transferase</keyword>
    <keyword evidence="14 19" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Hcy-binding" evidence="20">
        <location>
            <begin position="1"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="Pterin-binding" evidence="21">
        <location>
            <begin position="237"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding N-terminal" evidence="23">
        <location>
            <begin position="498"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="22">
        <location>
            <begin position="593"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="19">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00010398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00025552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00031040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="23">
        <source>
            <dbReference type="PROSITE" id="PS51337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="EMBL" id="CDD31151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="716" mass="76452" checksum="53929DD356DFE211" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRF1</accession>
    <name>R6YRF1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31161">
        <property type="protein sequence ID" value="CDD31161"/>
        <property type="gene ID" value="BN815_02305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023804">
        <property type="entry name" value="DUF3792_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12670">
        <property type="entry name" value="DUF3792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04086">
        <property type="entry name" value="TIGR04086_membr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437750" evidence="2">
        <location>
            <begin position="31"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="12192" checksum="40A2F1DB0A036EB4" modified="2013-07-24" version="1">MKKVKAFLLSLGVAGVMSAAILAVAAAVIAKSGNLPQGPALTVLVTATVCIGVFLGGLSAALFSGEKGALLGGACGLLAGCVVAAGSLVVYQGAFTISGGARLAAIFLSGCIGGILGVNRKQKVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRL6</accession>
    <name>R6YRL6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 9">tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase</fullName>
            <ecNumber evidence="8 9">2.8.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">tRNA-i(6)A37 methylthiotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">miaB</name>
        <name evidence="13" type="ORF">BN815_02380</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>[sulfur carrier]-SH + AH2 + N(6)-dimethylallyladenosine(37) in tRNA + 2 S-adenosyl-L-methionine = 2-methylsulfanyl-N(6)-dimethylallyladenosine(37) in tRNA + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37067"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="Rhea" id="RHEA-COMP:10376"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="ChEBI" id="CHEBI:74417"/>
            <dbReference type="EC" id="2.8.4.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="9">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the methylthiotransferase family. MiaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.3" evidence="8 9"/>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31236">
        <property type="protein sequence ID" value="CDD31236"/>
        <property type="gene ID" value="BN815_02380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035596">
        <property type="term" value="F:methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01864">
        <property type="entry name" value="tRNA_metthiotr_MiaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006463">
        <property type="entry name" value="MiaB_methiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00273">
        <property type="entry name" value="(dimethylallyl)adenosine_tRNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 9 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="9" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="11">
        <location>
            <begin position="33"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="12">
        <location>
            <begin position="174"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="10">
        <location>
            <begin position="407"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="469" mass="53489" checksum="1AEA8180A09F1DDB" modified="2013-07-24" version="1">MENQLAQEELSRQKLFMADVAEMMKVRARGPVPMAYVRTYGCQQNVADGEKIKGLLSEIGFSFAETPEEADFILFNTCAVREHAQDRVFGNVGALKNIKRRHPGTIIAVCGCMTEQEHVAERFKKSYPFVNIVFGTHVIHRLPEMLYTTLTDSKRVFLRGHEGEEVLEGIPTRRDGTSRAWVTVMLGCDNFCSYCIVPYVRGREKSRRPEEIVKECRQLIEAGYKEITLLGQNVNSYGKGLEEPVNFAELLRRIDAIPGDYRIRFMTSHPKDASRELFDVMAHSQHIPHYIHLPFQSGNDRVLREMNRRYNREQYLELIRYARSVMPDISFTSDVIVGFPGETYEEFQDTLSLIREVGFTSLFTFIYSPREGTRAAKMPDPVSHEEKTQWFAELLKVQEEVAAQRSAAMVGQTYRVLVEERNEKSGLLSGRTASSVVIDFPGGEELIGQYAQVKVIAARSWMLSGELAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRN9</accession>
    <name>R6YRN9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">16S rRNA (cytosine(967)-C(5))-methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.176</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">16S rRNA m5C967 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">rRNA (cytosine-C(5)-)-methyltransferase RsmB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_02400</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine(967) in 16S rRNA + S-adenosyl-L-methionine = 5-methylcytidine(967) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42748"/>
            <dbReference type="Rhea" id="RHEA-COMP:10219"/>
            <dbReference type="Rhea" id="RHEA-COMP:10220"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74483"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.176"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.176" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31256">
        <property type="protein sequence ID" value="CDD31256"/>
        <property type="gene ID" value="BN815_02400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008649">
        <property type="term" value="F:rRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031341">
        <property type="entry name" value="Methyltr_RsmF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004573">
        <property type="entry name" value="rRNA_ssu_MeTfrase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17125">
        <property type="entry name" value="Methyltr_RsmF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00563">
        <property type="entry name" value="rsmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11 13" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 11 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="12">
        <location>
            <begin position="170"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="11">
        <location>
            <begin position="260"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="11">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="445" mass="48349" checksum="9FF1E397E32870BA" modified="2013-07-24" version="1">MKHTPRHTATQALLQMEENEGYSNIVIDKALRAAGLDARDAGLASTIFYGVLERRLPLEHFLRGCLANPQKKLDPQVWALLLCAAYQILYLDRVPDSAAVNEAVEEAKGIKGGAFAGLVNGVLRSLARKKAGLALPQGDSLQALSLRYSIPQELIALWQRSYGKELTAQLLEAFQRRAPLYLRINPLRATAEGLAASLGRQGFSLKPVESLPWAAVAEGEGSPASLEEFQEGLFHVQDLSAQLACSLLEARPGQAVCDCCAAPGGKSFTLAEDMENTGSLHAFDLYKGRVGLIQQGAERLRLSCIQAGRKDASKPYEGLGPMDRVLCDVPCSGYGVIRRKPEIRYKPLATVRELPRLQYAILENGAALVKPGGLLLYATCTLNPAENGAVASRFLQEHPEFEPAPFRLPGVTRLVEEPPHTITLLPVNGGSDGFYAARFRRKGDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSR5</accession>
    <name>R6YSR5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00423</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000434">
        <property type="protein sequence ID" value="CDD31611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31611">
        <property type="protein sequence ID" value="CDD31611"/>
        <property type="gene ID" value="BN815_00423"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="23494" checksum="12BFE24F881969C2" modified="2013-07-24" version="1">MSSYSKKKSCDFVVTAENTGKVLALSQRFLPDALYCFTLKHFSNLLKKEDCTVGANVSKKSKKRQVGKHFRPNIKKQKPRRLKLRPLEPHEKEMAEAHHTLVLRFLRVNGLPMEDYYDVVIFRYLLAVEKWFRRPDLYRYGFTSIAWAAMSSALSHEREKQRRRPQTVSLEEPIPGCDGLTWGDAITQRNLTYTPYLLEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSZ1</accession>
    <name>R6YSZ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00451</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000445">
        <property type="protein sequence ID" value="CDD31721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31721">
        <property type="protein sequence ID" value="CDD31721"/>
        <property type="gene ID" value="BN815_00451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="66"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="270" mass="29942" checksum="AAC1F3D2B3802B77" modified="2013-07-24" version="1">MKKVSTTVTYGVLILAAAVMCFPVLFSLALSFSDLNDILAGDYIPDSLNFTNYINAFQTQPLLHYMLNSAIVGVLSTALEIVFALLAAYAIVFIPFRAKKVVFLLMMATMMIPGEVLVITNFQTIRSWNMLNTYQGLILPGLASTFGIFLFRQNMLQIPLELKEASTVAGVSEFGFFWKIVAPMVVNTVVTLAIYFFLVSWNSYMWPLLSTTEDTVRTVQIGLRQLKNTEAVSDYGMMAAGAMVTSLPTLLLIFFGQKRLQEGMTKGAIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z987</accession>
    <name>R6Z987_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27032">
        <property type="protein sequence ID" value="CDD27032"/>
        <property type="gene ID" value="BN815_00489"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="46" mass="5034" checksum="CCDE4FE619ABE2FB" modified="2013-07-24" version="1">METYTASGYSAYRETYSMPGQELYVILPDQASVEQAAALLEETLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA08</accession>
    <name>R6ZA08_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27312">
        <property type="protein sequence ID" value="CDD27312"/>
        <property type="gene ID" value="BN815_00583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="47"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="400" mass="43190" checksum="931DB816CE80BF08" modified="2013-07-24" version="1">MRKPAAHFKPETKQPTPKKKNVVTATLCIVLALVLVMAVAVTGCNSTNAPESEASSQTPTPTPTAEPTPTPEPTRAMSEGRFQVTCQQFADLYISFLQDSESSNSNLVLKADEYGPWNLYKGEMNLDMSLSFESQGNTVTAEETFDTVHFYCSDLVAQQDFYVSPFSAIIQTTHPDLSYGEAAGVFGTYLEEMLDEMNSGDGDTYILPKEIDGINYQMIVSMDATTGKSSLELIASEAVLTTVSSETSETQSDIETTDSPELVTDHEAFLNDYVAKLKVLEMFEENYQLSVTETDGGLSHTFNGESTNVLLTFTADGMVLTSSSTGEVDSTAAFLAMAAIMNTITPSVGSISDCATVVQDMLGELQETGNITEEMVYHTVGNVQYGVTCPGIIVFSVVNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZD03</accession>
    <name>R6ZD03_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00837</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000086">
        <property type="protein sequence ID" value="CDD28387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28387">
        <property type="protein sequence ID" value="CDD28387"/>
        <property type="gene ID" value="BN815_00837"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="11"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="16473" checksum="25E742E81B824AA0" modified="2013-07-24" version="1">MPIGVEESAVTWLDRLRHAILPALTLSVTGVANIALHTREKLVDVLSSDYVLLARARGESRRSLVLRHGLRNVALPALTLQFGSISEIIGGSVLVEQVFSYPGLGQAAVTAGLGSDLPLLLGITVITSALVFGGNLAADLLYGLVDPRIRKGVGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDB2</accession>
    <name>R6ZDB2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28487">
        <property type="protein sequence ID" value="CDD28487"/>
        <property type="gene ID" value="BN815_00852"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038475">
        <property type="entry name" value="RecG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="69"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="16317" checksum="C9F6CB369196DCE9" modified="2013-07-24" version="1">MNKHASSPYNPNIAHVFYLAGFIESWGRAIEKICSACERDGVPQPEYTINPGDIMIKFTAPEDRVIRSVTGRVTEKVTDKVTDTLDETSLKILNLLAVDPAYTTTFLAENLSLSRKTVSLRLKMLKGAGVIERIGSDRKGYWKLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZES2</accession>
    <name>R6ZES2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28992">
        <property type="protein sequence ID" value="CDD28992"/>
        <property type="gene ID" value="BN815_01015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="57" mass="6806" checksum="70D87A5D8FEB041F" modified="2013-07-24" version="1">MEQKDKGKKQILLRISPKLWEELAAWAEDDFRSINGQIEYLLTECVKKRKKGKKEQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF02</accession>
    <name>R6ZF02_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000120">
        <property type="protein sequence ID" value="CDD29067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29067">
        <property type="protein sequence ID" value="CDD29067"/>
        <property type="gene ID" value="BN815_01045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="71"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="165"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="22804" checksum="41B30A0F0E50FDF6" modified="2013-07-24" version="1">MGVGFHIGGVVLVIAPHPESHGDQCKGDGRQQSQSHPPVNGKHGGDHHQGQQDVGTEFRNHVGQGRLNVLDPVHDGALHGADRPGLHLSKRRPHKPVRCLEAQTLQDGVGGHMSQHGGQGVARHLDGVARQAHAAPEQNTIPVRLPLQKQPDDLIDAEIRHKAARHTEDGQHHRGGHLPPAGRGEGQQDAEPGSLLHTQHSSQRKIVVVCLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGY3</accession>
    <name>R6ZGY3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">DNA gyrase subunit B</fullName>
            <ecNumber evidence="10">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gyrB</name>
        <name evidence="12" type="ORF">BN815_01245</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="10">Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the type II topoisomerase GyrB family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the type II topoisomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000172">
        <property type="protein sequence ID" value="CDD29717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29717">
        <property type="protein sequence ID" value="CDD29717"/>
        <property type="gene ID" value="BN815_01245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03366">
        <property type="entry name" value="TOPRIM_TopoIIA_GyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01898">
        <property type="entry name" value="GyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011557">
        <property type="entry name" value="GyrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034160">
        <property type="entry name" value="TOPRIM_GyrB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01059">
        <property type="entry name" value="gyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="11">
        <location>
            <begin position="446"/>
            <end position="560"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD29717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="659" mass="74115" checksum="E39DC281010AB271" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHY6</accession>
    <name>R6ZHY6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="1">PTH</shortName>
            <ecNumber evidence="1 2">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pth</name>
        <name evidence="4" type="ORF">BN815_01359</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PTH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="1 2"/>
    <dbReference type="EMBL" id="CBGU010000191">
        <property type="protein sequence ID" value="CDD30057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30057">
        <property type="protein sequence ID" value="CDD30057"/>
        <property type="gene ID" value="BN815_01359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:aminoacyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00462">
        <property type="entry name" value="PTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00083">
        <property type="entry name" value="Pept_tRNA_hydro_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001328">
        <property type="entry name" value="Pept_tRNA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018171">
        <property type="entry name" value="Pept_tRNA_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036416">
        <property type="entry name" value="Pept_tRNA_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17224">
        <property type="entry name" value="PTHR17224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01195">
        <property type="entry name" value="Pept_tRNA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53178">
        <property type="entry name" value="SSF53178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00447">
        <property type="entry name" value="pth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01195">
        <property type="entry name" value="PEPT_TRNA_HYDROL_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01196">
        <property type="entry name" value="PEPT_TRNA_HYDROL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="22400" checksum="76BA6EC1C4E99D2F" modified="2013-07-24" version="1">MLRLFQKNTPSPGPVDFMIVGLGNPGKQYENTRHNAGFLAVDTIAQKHHTDIKRIKFKGLVGECSLGGKKALLLKPSTFMNLSGQSVREAMQFYKLSPEKVLVIFDDINLEPGKLRIRRKGSDGGHNGMKNIIYLSGSDQFPRIKLGVGKKPHPDYNLADWVLSRFTEKEQKDLATALENAAAAAELIAKGDMDRAMNLYNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIB0</accession>
    <name>R6ZIB0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30187">
        <property type="protein sequence ID" value="CDD30187"/>
        <property type="gene ID" value="BN815_01430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="48" mass="5592" checksum="A0850B41053D73A8" modified="2013-07-24" version="1">MAQQLPHVIPSIYLANYLNDFEPLVPRYGVTPLGRKKRWKGSNIKKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIH0</accession>
    <name>R6ZIH0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPM-type phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01495</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30252">
        <property type="protein sequence ID" value="CDD30252"/>
        <property type="gene ID" value="BN815_01495"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="71"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="330" mass="35280" checksum="785D939F4DC9FFE0" modified="2013-07-24" version="1">MNNPASPVPVPSPAPVPSEGFSFFAVAVPLWGVLLGAAVLACGCLLAFLLLRRKLPKASCPSSPGKVEQVRVGKLHQQGAREGQQDCFGVSDESLVPTHGLLAVVADGMGGLSGGERISQLVVQAVLDAFLSAWKEENPQRLLLVLAQQAVEEVNRYLGPEGLRESGSTLVMALLRQGSLTFLSVGDSRVSLYRRGALTQLNREHIYRRELALRGVNGEMPLEEAYTSSQGAGLTSFLGMGPLAHIDFPDAPLSLLPGDKLVLMSDGVYNALTDQELALAMEQPPEEAAQAIGRAIEEKNYQNQDNYTAVILGCEGPPPAQKQPKEGKHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIM1</accession>
    <name>R6ZIM1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01536</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30302">
        <property type="protein sequence ID" value="CDD30302"/>
        <property type="gene ID" value="BN815_01536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="26"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="265" mass="30284" checksum="18C4A9031E2FBC66" modified="2013-07-24" version="1">MLDFFLNLRYSRGRRQVKRMTFLEKLEALLEREHLNRRTLSLKTGIPYTTIDNWYKRSYEGLKLSTAGKLASFFGTTTDYFLREELTDPDYGKTAGFQVEFSEMGLLQKYRALDTYGKKAVEAVLDTEHDRMTHTAQREQKGWITYITCYDLAVSAGTGEPLGDTYYTTKLEIPTQRVPENAHCCLRVNGDSMEPAYKDGDIVFIQRVEDGALREGEVGIFALNGEGYIKQLGHRQLLSFNPKYPPIAVGAYDRLECQGRVLGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJE6</accession>
    <name>R6ZJE6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Anaerobic ribonucleoside-triphosphate reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01783</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30572">
        <property type="protein sequence ID" value="CDD30572"/>
        <property type="gene ID" value="BN815_01783"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008998">
        <property type="term" value="F:ribonucleoside-triphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01675">
        <property type="entry name" value="RNR_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012833">
        <property type="entry name" value="NrdD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13597">
        <property type="entry name" value="NRDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02487">
        <property type="entry name" value="NrdD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-cone" evidence="4">
        <location>
            <begin position="2"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="764" mass="86119" checksum="AA1C348529DB69F4" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK23</accession>
    <name>R6ZK23_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal protein L7Ae</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30807">
        <property type="protein sequence ID" value="CDD30807"/>
        <property type="gene ID" value="BN815_00156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004038">
        <property type="entry name" value="Ribosomal_L7Ae/L30e/S12e/Gad45"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01248">
        <property type="entry name" value="Ribosomal_L7Ae"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L7Ae" evidence="1">
        <location>
            <begin position="3"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="11860" checksum="EA81F7F11F58A592" modified="2013-07-24" version="1">MDKLLSLLGLARRAGKIEPGFDAAVSAARGHKAALLLAARDISEKTLKNLRYEGDRAGVPTLRGDFGMEELGRACGMRAGVLAITDKGFAKAVKELAEAVTEEKEEHAHDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK38</accession>
    <name>R6ZK38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MazG nucleotide pyrophosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30822">
        <property type="protein sequence ID" value="CDD30822"/>
        <property type="gene ID" value="BN815_02009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="21"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11415" checksum="9617DD7888D8E336" modified="2013-07-24" version="1">MDEQQQRVKDWMARYGLGTDPQARMLDLSSEVGELAKEVLKSTAYGTKPFTPTASLEEELGDCLFSLLCLSQCLGLEGEAALGKALEKYEKRFAERGTIGHRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKE7</accession>
    <name>R6ZKE7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transporter major facilitator family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02094</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30932">
        <property type="protein sequence ID" value="CDD30932"/>
        <property type="gene ID" value="BN815_02094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="245"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="8">
        <location>
            <begin position="5"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="390" mass="41409" checksum="A66F26217118DCCF" modified="2013-07-24" version="1">MATLLLVVIYISFIGLGIPDSLFGAAWPAIYGEFSLPISFGSFVTVTISCCTVVSSVLSSRVIGRFGTNKVSAISTALTALGLFGFSCAGSFPWLILCAIPLGLGAGAIDTALNNYVALHYSATHMSFLHCFYGVGVSLSPYILSLVISGPAGWRGGYRVALCIQLCITALMFLTLPVWAKAHGKESGGGEDVVSEALPIREVLRIPGVKGMCLLFITSVGIETTCGTWGSTFLVEYKHMAADQAAGMVTFYYIGMALGRFLSGVLASRLHSWKIIRLGQWVLGAAVVVLLLPAPATVSAVGLFLVGLGNGPLFPNFNYLTPESFGPQRSQSVMGVQMAFSYVGSMGIPTLFGVLGQLTTVGLLPLYLLVFFVAMVLATWKVKRILRVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKS1</accession>
    <name>R6ZKS1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">N-acetylglucosamine-6-phosphate deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02186</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="7">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the metallo-dependent hydrolases superfamily. NagA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000362">
        <property type="protein sequence ID" value="CDD31032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31032">
        <property type="protein sequence ID" value="CDD31032"/>
        <property type="gene ID" value="BN815_02186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008448">
        <property type="term" value="F:N-acetylglucosamine-6-phosphate deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006044">
        <property type="term" value="P:N-acetylglucosamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00854">
        <property type="entry name" value="NagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003764">
        <property type="entry name" value="GlcNAc_6-P_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11113:SF14">
        <property type="entry name" value="PTHR11113:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038994">
        <property type="entry name" value="NagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00221">
        <property type="entry name" value="nagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="8">
        <location>
            <begin position="50"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="219"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="307"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="5">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR038994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR038994-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="374" mass="40087" checksum="00BE3574B337CC73" modified="2013-07-24" version="1">MLLIHANYLDEDFRLVQGDIEIEDGKILRVGKDLPRKEEDLAVDCAGSYTVVPGFVDVHIHGCAGADTCDATREALEAMAAFLLAHGVTSFCPTTMTTSRETIQAALLAAKDMMDHPMEGGARVVGVNMEGPFIAKERKGAQKEEDILPPDFPLFQRFYEESGGIVRLVDVAPEQPGGLEFVEKASQLCTVSIAHTTADYDQAKAAFDKGVTHATHLFNAMSGLHHRKPGVVGAVFDDSRVRGELICDGFHIHPAVLRAAFRLLGDRALIVSDSMRANGMPEGEAFDLGGQMVTVHQGKALLPDGTIAGSVTNLHQEIKNLVSFGVPFEQAVKAATLVPARAIGLDGEIGSIAPGKRADLVVLDENLDIAAVYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKV5</accession>
    <name>R6ZKV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31072">
        <property type="protein sequence ID" value="CDD31072"/>
        <property type="gene ID" value="BN815_02225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9437" checksum="6392992AB4E361DC" modified="2013-07-24" version="1">MKPKDPTAPKHAHYHEHDPLPPGLLPEDTAVASANECTGLMFTPPENAAQQEAYQELSPMAIPRREPGGRALSKGCPGTGKRPEKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL22</accession>
    <name>R6ZL22_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Diaminopimelate decarboxylase</fullName>
            <shortName evidence="2">DAP decarboxylase</shortName>
            <shortName evidence="2">DAPDC</shortName>
            <ecNumber evidence="2 3">4.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lysA</name>
        <name evidence="6" type="ORF">BN815_02291</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>H(+) + meso-2,6-diaminoheptanedioate = CO2 + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:15101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="4.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 2 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.20" evidence="2 3"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31147">
        <property type="protein sequence ID" value="CDD31147"/>
        <property type="gene ID" value="BN815_02291"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06828">
        <property type="entry name" value="PLPDE_III_DapDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02120">
        <property type="entry name" value="LysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002986">
        <property type="entry name" value="DAP_deCOOHase_LysA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01181">
        <property type="entry name" value="DAPDCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01048">
        <property type="entry name" value="lysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_Arg_deC_N" evidence="5">
        <location>
            <begin position="46"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="4">
        <location>
            <begin position="298"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="290"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="362"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="390"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="431" mass="47011" checksum="70AD6FFAF613B470" modified="2013-07-24" version="1">MIANCLGINEAGHLEISGCDTVRLAEQYGTPLYVMSEDEIRSVCRRYVASFAKNYNGNGKPIYASKAFSCKEIYRIVLSEGLDVEVVSGGELYTALQAGVPGSQIHFQGNNKSAGELTMAVENGVGDIVVDNLYELERLNAIAGEHSMVAPISFRIKPGIDAHTHEFIRTGQVDSKFGLDLASGEAMEALRRAKAMEHVAVKGLHCHIGSQILEKAPFVHAAEVMLQFYAKVRDELGMTFEHLNLGGGFGIHYTAQDDAIPYEEYMEDVSAMVHSTCEKLGLELPRIYIEPGRSIVGEAGITLYTVGSIKEIPGVRTYVAIDGGMFDNPRYALYQSAYTCCIANKASQPADFTATIAGKCCESGDLIQEHTLIQKPEEGDILAVLSTGAYNYSMASNYNRNLKPACVMVSKGESRIVIKGETYEDLIRNDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL50</accession>
    <name>R6ZL50_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 14">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uppP</name>
        <name evidence="15" type="ORF">BN815_02321</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the UppP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 14"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31177">
        <property type="protein sequence ID" value="CDD31177"/>
        <property type="gene ID" value="BN815_02321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="248"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD31177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="33701" checksum="72903E013F0D5957" modified="2013-07-24" version="1">MSIFDAIIQGIIQGLTEFLPVSSSGHLSISKHIFGIEMPGILFDIMLHLGTLIAVVFVYRQLIWRLIKEFGSLCVDIAHRNFKWSEMNHDRRLLFMLVIGLLPLFFLFVPIPGTGLDFKGLSDMLGSDSDILVEGLALLATSALLFAGIAANKRVKEVHRHKDASGRMVSSNGRKKIHTVDAILIGITQCLAAIFPGLSRSGSTLSVGLLRGINQQTALDYSFVLGIPSIAAAALVSILDMGDQADAVGAGALVAGIITAAVVGFLAIKLLKWIVTTNKLHIFAFYTLIAGGLITVIGMIEHITGNNLFTGLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM42</accession>
    <name>R6ZM42_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmC</name>
        <name evidence="6" type="ORF">BN815_00373</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31497">
        <property type="protein sequence ID" value="CDD31497"/>
        <property type="gene ID" value="BN815_00373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_L29/L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_L29/L35_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018254">
        <property type="entry name" value="Ribosomal_L29_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="SSF46561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00579">
        <property type="entry name" value="RIBOSOMAL_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="7667" checksum="8786217C2BBD513B" modified="2013-07-24" version="1">MKASEIREMTADELNSKLADLKAELFNLRFQLAINQLDNPMRISAVKKDIARVKTVIRENELHAENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU91</accession>
    <name>R6XU91_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-grasp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00575</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27303">
        <property type="protein sequence ID" value="CDD27303"/>
        <property type="gene ID" value="BN815_00575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="127"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="411" mass="47391" checksum="2A7734F900DF0F96" modified="2013-07-24" version="1">MNQEIDFQPVLLGSDINVYGMARSFHQEYGVKSVAIGKGILGPCTASKIVTVEVVEPNLEDDQVFVKTLLDFAKRYEGSGKKLLLVPCGDNYIKLLVRNQEKLRGTYVFECISEELLMRLSIKESFYQVCTEHGFAFPKTTTCSYENYKNVELPFDFPVIIKPSNSVAYWNCRFPHKKKVFVAQSREEFSAILEAIYSSSYKDHLILQEYIPGDDSNMRVMNCYCGRDGKVKLIALGNALLEEHSPEGIGSYAAIINGYDEKLNQQMKNFLEGIGYVGFANFDMKYDHRDGTYKLFEMNLRQGRSSYYVTAAGYNLAKWLVDDVLYHKDMECTVAKNKVLWTIIPLKIIFDYVKSESVKAEAKALIKAGKVCHSYYYEGDRSLKRWVHYKKNQFHYFEKYKRYFGNKGLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYU9</accession>
    <name>R6XYU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage V sporulation protein AE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28928">
        <property type="protein sequence ID" value="CDD28928"/>
        <property type="gene ID" value="BN815_01003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014204">
        <property type="entry name" value="Spore_V_AE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005562">
        <property type="entry name" value="SpoVA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38450">
        <property type="entry name" value="PTHR38450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03862">
        <property type="entry name" value="SpoVAC_SpoVAEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02839">
        <property type="entry name" value="spore_V_AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="11905" checksum="BECC5AE704F38D7B" modified="2013-07-24" version="1">MEYLNAFWVGGLICVIGQLLIDLTKLTPARIMVLFVTAGVALGALGLYGPLAEFAGCGATVPLTGFGWALSEGVRKAVAEEGFLGVFTGGLTAGAAGTAAAIFFGTLAALVAKPRDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y099</accession>
    <name>R6Y099_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">4-diphosphocytidyl-2-C-methyl-D-erythritol kinase</fullName>
            <shortName evidence="9">CMK</shortName>
            <ecNumber evidence="2 9">2.7.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">ispE</name>
        <name evidence="12" type="ORF">BN815_00572</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.148"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the GHMP kinase family. IspE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.148" evidence="2 9"/>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27300">
        <property type="protein sequence ID" value="CDD27300"/>
        <property type="gene ID" value="BN815_00572"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050515">
        <property type="term" value="F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00061">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004424">
        <property type="entry name" value="IspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43527:SF2">
        <property type="entry name" value="PTHR43527:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010376">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00154">
        <property type="entry name" value="ispE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 9 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="10">
        <location>
            <begin position="85"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="11">
        <location>
            <begin position="225"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="8"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="93"/>
            <end position="103"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD27300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="31488" checksum="E1C42D475125E889" modified="2013-07-24" version="1">MKLRAYAKINLTLDVTGRREDGYHTLDTVMQTVSVWDEVEIKKINKPGIRLFCNREYLPVDTKNTAFRAAQYFFERCGITGQGLSIHIRKYIPSRAGMGGGSADAAAVLHGLNQMFHAGLPQQELVELGARVGADVPFCVVGGTCRCRGIGEQVEPVSPLPDCWLVLCKPPAGMSTPRAYALIDQFPLSRAQATEKMVGLLSAGDLRRVAGGLSNRFDETMKLQQVREIKRVMGNSGALGASMTGSGSAVFGIFDSEAAARACMQQLEGKGRLYLARPLSRSWDYAPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Q5</accession>
    <name>R6Y0Q5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycoside Hydrolase Family 25</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00626</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000040">
        <property type="protein sequence ID" value="CDD27435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27435">
        <property type="protein sequence ID" value="CDD27435"/>
        <property type="gene ID" value="BN815_00626"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016998">
        <property type="term" value="P:cell wall macromolecule catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002053">
        <property type="entry name" value="Glyco_hydro_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01183">
        <property type="entry name" value="Glyco_hydro_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51904">
        <property type="entry name" value="GLYCOSYL_HYDROL_F25_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437238" evidence="2">
        <location>
            <begin position="27"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="300" mass="33242" checksum="C4C098313BEF5CAB" modified="2013-07-24" version="1">MDLTRKRNLFLAITVVLVVAIVAVSAVILVRGPRESSVELVSNNGDGTATVNDINDGNMTIPYYDINVNTYKLQDFKAGSNGTIVYEGGDSFVGINVNSQMGAIDWAQVKQSGVDFALIRVGWRGKTNGNIVLDSNFQANIEGALAAEIPVGVYFYSKAVTTEEAEAEATFVLEQIRNYQVTWPIAFFWEYDTNDDGSQDQSSRTIACNGEQVTSFIKAFCDKIELAGFTASYYADKTMAYETLQLDQLTSYDLWYAEYRAQPGFYYDFGMWQYTDEGTVSGISGSVPITLSFKNYPSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0W8</accession>
    <name>R6Y0W8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01224</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29688">
        <property type="protein sequence ID" value="CDD29688"/>
        <property type="gene ID" value="BN815_01224"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="17267" checksum="89019F0F93BB850C" modified="2013-07-24" version="1">MATYLDEYRNRKLSFAPLLQAGKMTLGDTMVYQELLYRIQVLETCQMLCKTAPVTTDTRELVGHYQLVDAVLFCAGKEHAFGAPVQEKGKAQRKAAGENLAKIVADCRKRFSSFQAKSPEQYRQSISAMVGTVLVAWVQLRNTYVPVGEEANQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y220</accession>
    <name>R6Y220_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">V-type ATP synthase beta chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">V-ATPase subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">atpB</name>
        <name evidence="7" type="ORF">BN815_01369</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000193">
        <property type="protein sequence ID" value="CDD30103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30103">
        <property type="protein sequence ID" value="CDD30103"/>
        <property type="gene ID" value="BN815_01369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00310">
        <property type="entry name" value="ATP_synth_B_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022879">
        <property type="entry name" value="V-ATPase_su_B/beta"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43389">
        <property type="entry name" value="PTHR43389"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039114">
        <property type="entry name" value="V-ATPsynth_beta/V-ATPase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ATP-synt_ab_N" evidence="6">
        <location>
            <begin position="8"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_ab" evidence="5">
        <location>
            <begin position="131"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="457" mass="50345" checksum="B3CECD0F1D5FE02E" modified="2013-07-24" version="1">MPKEYRTIQEVAGPLMLVKGVEGVAYDELGEIQLSSGEKRRCKVLEINEGNALVQLFESSTGINLESSKVRFLGRSMELGVSGDMLGRVFDGLGRPIDGGPEILPDKRADVNGLPMNPAARNYPQEFIQTGVSAIDGLNTLVRGQKLPIFSASGLPHAQLAAQIARQAKVRGTTEPFVVVFAAMGITFEESDFFVKSFQETGAIDRTVLFVNLANDPAVERIATPRMALTAAEYLAFEKDMHVLVILTDITNYADALREVSAARKEVPGRRGYPGYMYTDLASLYERAGRQKGKAGSITLIPILTMPEDDKTHPIPDLTGYITEGQIILSRELYRKNIAPPIDVLPSLSRLKDKGIGEGKTRKDHAATMNQLFAAYARGKEAKELMVVLGEAALTDTDKLYAQFADAFEQEYVSQGYRTDRSIEETLDLGWKLLGILPRSELKRISDTLLDEYYGKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y237</accession>
    <name>R6Y237_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01385</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30128">
        <property type="protein sequence ID" value="CDD30128"/>
        <property type="gene ID" value="BN815_01385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="80" mass="8984" checksum="A7DD77F1F053CD05" modified="2013-07-24" version="1">MKCTICIGSSCHLKGSRQIVEELQYLVKENHLEDKVELGGTFCMGNCVNGVNVTLDDKLYSLSPETTKEFFEKEILAKVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Q6</accession>
    <name>R6Y2Q6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HD domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00761</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28095">
        <property type="protein sequence ID" value="CDD28095"/>
        <property type="gene ID" value="BN815_00761"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016793">
        <property type="term" value="F:triphosphoric monoester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006261">
        <property type="entry name" value="dNTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026875">
        <property type="entry name" value="PHydrolase_assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13286">
        <property type="entry name" value="HD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01353">
        <property type="entry name" value="dGTP_triPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="75"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="335" mass="38547" checksum="B9E5B8A2505EC2D1" modified="2013-07-24" version="1">MTIREQTQQLERQTLAPWAAFSQETRGRQRPEEECEMRTPYQRDRDRIIHCKSFRRLKHKTQVFLSPEGDHYRTRLTHTLEVAQIARTIARVLRLNEDLTEAVALAHDLGHTPFGHAGERALNALLPHGFRHYEQSLRGVERLEKEGRGLNLTYEVRNGVLCHTTGLEADTAEGRIIRWADKIAYINHDIDDAIRAGVLREEDIPRAITQVLGDSKTKRITALIRSVVENSREGAIAMDPATYQAYTELEAFMYQAVYLNEYAKKEERKVPHIIQSLFVHFRNPDHLPDYMQKIAEEEGVDTASCDYVAGMTDHYAVACYQELFIPKAWNLGLGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Z0</accession>
    <name>R6Y2Z0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01609</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparagine synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30388">
        <property type="protein sequence ID" value="CDD30388"/>
        <property type="gene ID" value="BN815_01609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_Synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00712">
        <property type="entry name" value="AsnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006426">
        <property type="entry name" value="Asn_synth_AEB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033738">
        <property type="entry name" value="AsnB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13537">
        <property type="entry name" value="GATase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001589">
        <property type="entry name" value="Asn_synthetase_glu-h"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01536">
        <property type="entry name" value="asn_synth_AEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="7">
        <location>
            <begin position="1"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for beta-aspartyl-AMP intermediate formation" evidence="6">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001589-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001589-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="551" mass="62543" checksum="6996EFF330827137" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y314</accession>
    <name>R6Y314_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01634</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30413">
        <property type="protein sequence ID" value="CDD30413"/>
        <property type="gene ID" value="BN815_01634"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17371" checksum="53A7F61B56BF080E" modified="2013-07-24" version="1">MYCILVAGVPATGKGRMAQELSQRLGLPWLSKDAIKEKLYDTVGFRCRAEKVALGEVALEALYYAAGQLLQAGVSCILENNFEEVSKPGLLALLERCQCQAVTVFLTGEPEALYRRFLQRDRSPQRHRGHVVNTQYPERPGGEPLPPPPSLEAFTQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y374</accession>
    <name>R6Y374_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pyruvate-flavodoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01670</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30453">
        <property type="protein sequence ID" value="CDD30453"/>
        <property type="gene ID" value="BN815_01670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037112">
        <property type="entry name" value="Pyrv-flavodox_OxR_EKR_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019456">
        <property type="entry name" value="Pyrv-flavodox_OxRtase_EKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011895">
        <property type="entry name" value="Pyrv_flavodox_OxRed"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10371">
        <property type="entry name" value="EKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00890">
        <property type="entry name" value="EKR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02176">
        <property type="entry name" value="pyruv_ox_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="687"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="741"/>
            <end position="765"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="765" mass="83394" checksum="BA933D1747F421B7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3B3</accession>
    <name>R6Y3B3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N5-carboxyaminoimidazole ribonucleotide mutase</fullName>
            <shortName evidence="3 4">N5-CAIR mutase</shortName>
            <ecNumber evidence="3 4">5.4.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">5-(carboxyamino)imidazole ribonucleotide mutase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purE</name>
        <name evidence="7" type="ORF">BN815_00831</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate</text>
            <dbReference type="Rhea" id="RHEA:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:77657"/>
            <dbReference type="EC" id="5.4.99.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AIR carboxylase family. Class I subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.18" evidence="3 4"/>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28345">
        <property type="protein sequence ID" value="CDD28345"/>
        <property type="gene ID" value="BN815_00831"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034023">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01929">
        <property type="entry name" value="PurE_classI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033747">
        <property type="entry name" value="PurE_ClassI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000031">
        <property type="entry name" value="PurE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024694">
        <property type="entry name" value="PurE_prokaryotes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00731">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001338">
        <property type="entry name" value="AIR_carboxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01001">
        <property type="entry name" value="AIRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01162">
        <property type="entry name" value="purE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1 3 4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRC" evidence="6">
        <location>
            <begin position="3"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR001338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001338-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="16929" checksum="64B6D30FED01660A" modified="2013-07-24" version="1">MSKKVAVIMGSDSDFPTVSPAIKRLKGFGIPVEVKVMSAHRTPDAAAEFSRTAREQGFGVIIAAAGKAAHLAGVLAAHTTLPVIGIPVKSSTLDGLDALLSTVQMPSGIPVATVAIDGADNAAILACQMLALSDEDLAAQLLQMKADMAQGVAKKDAALQEKVAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3J9</accession>
    <name>R6Y3J9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MgsA AAA+ ATPase C-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01756</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AAA ATPase family. RarA/MGS1/WRNIP1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30543">
        <property type="protein sequence ID" value="CDD30543"/>
        <property type="gene ID" value="BN815_01756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032423">
        <property type="entry name" value="AAA_assoc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021886">
        <property type="entry name" value="MgsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16193">
        <property type="entry name" value="AAA_assoc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12002">
        <property type="entry name" value="MgsA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="38"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008959"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="46599" checksum="4714828EDF8F21A9" modified="2013-07-24" version="1">MAAPLADRVRPATLDQVVGQQHILGPGRALRKIIEAGEVPNMVFYGPAGVGKTTVASIIAKNTKRHLVKLNGTTASTADIKEAVASTNTFEGINGVLLYLDEIQYFNKKQQQTLLEFMENGSITLIASTTENPYFYVYNAILSRSTVFEFKAVESGEIEKAVERAFRVLAEEEGRPILPEEGVCAHIASHCGGDVRKAMNAVELSTLACDSGGPHIEVTLEAARELTQKSTMRYDKGGDEHYDLMSAFQKSMRGSDPDATVHYLGRLLEAGDLPSACRRLLVCACEDVGLAWPQIIPIVKAAVDAALMVGLPEARIPLADAAILVALAPKSNSAYSALDSAIADIKAGKAGPIPRNLQNKHYDSAEVERKGQFYQYPHDAPHHWLPQQYLPDSLLGARYYQYGENKNEQSFRAYWEKIKHTGGGSPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3L1</accession>
    <name>R6Y3L1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01771</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30558">
        <property type="protein sequence ID" value="CDD30558"/>
        <property type="gene ID" value="BN815_01771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="203" mass="22753" checksum="566F824627076993" modified="2013-07-24" version="1">MKRYCIITIEREYASGGSLVGKLVGQALGIPVYGREILEIAAREGGTTPEYIEHLEETDTNSLLYSLVAMAKTVQGQLPQISKTDQLNLLEARIIQRLAQEGPCVIVGRCAGWVLREQPHVLNVFIHADRQERLRRAVEEYGIPQDQAASVLHRFDHRRSNFYHANTGRSWREREGYHMVLDSGLLGVELCSQLLVAAAQSEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3M9</accession>
    <name>R6Y3M9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoenolpyruvate carboxykinase [GTP]</fullName>
            <shortName evidence="8">PEP carboxykinase</shortName>
            <shortName evidence="8">PEPCK</shortName>
            <ecNumber evidence="8">4.1.1.32</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">GTP-dependent phosphoenolpyruvate carboxykinase</fullName>
            <shortName evidence="8">GTP-PEPCK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pckG</name>
        <name evidence="11" type="ORF">BN815_01789</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>GTP + oxaloacetate = CO2 + GDP + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10388"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.1.1.32"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.32" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30578">
        <property type="protein sequence ID" value="CDD30578"/>
        <property type="gene ID" value="BN815_01789"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004613">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (GTP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00819">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.449.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00452">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018091">
        <property type="entry name" value="PEP_carboxykin_GTP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008209">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035077">
        <property type="entry name" value="PEP_carboxykinase_GTP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035078">
        <property type="entry name" value="PEP_carboxykinase_GTP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008210">
        <property type="entry name" value="PEP_carboxykinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11561">
        <property type="entry name" value="PTHR11561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00821">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17297">
        <property type="entry name" value="PEPCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001348">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68923">
        <property type="entry name" value="SSF68923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00505">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 8" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="5 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PEPCK_N" evidence="10">
        <location>
            <begin position="10"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="PEPCK_GTP" evidence="9">
        <location>
            <begin position="222"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="197"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="369"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="249"/>
            <end position="254"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="371"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="496"/>
            <end position="499"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF17297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="589" mass="65895" checksum="9F16D09AA23DB33F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3T4</accession>
    <name>R6Y3T4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Signal recognition particle protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Fifty-four homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ffh</name>
        <name evidence="9" type="ORF">BN815_01850</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="7">The SRP-RNC complex is targeted to the cytoplasmic membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the GTP-binding SRP family. SRP54 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30643">
        <property type="protein sequence ID" value="CDD30643"/>
        <property type="gene ID" value="BN815_01850"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048500">
        <property type="term" value="C:signal recognition particle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008312">
        <property type="term" value="F:7S RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00306">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036891">
        <property type="entry name" value="Signal_recog_part_SRP54_M_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004125">
        <property type="entry name" value="Signal_recog_particle_SRP54_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004780">
        <property type="entry name" value="SRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022941">
        <property type="entry name" value="SRP54"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564">
        <property type="entry name" value="PTHR11564"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11564:SF7">
        <property type="entry name" value="PTHR11564:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02978">
        <property type="entry name" value="SRP_SPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47446">
        <property type="entry name" value="SSF47446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00959">
        <property type="entry name" value="ffh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0733">Signal recognition particle</keyword>
    <feature type="domain" description="SRP54" evidence="8">
        <location>
            <begin position="268"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="108"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="189"/>
            <end position="193"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="247"/>
            <end position="250"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="442" mass="48551" checksum="080875B068DBDA85" modified="2013-07-24" version="1">MAFEGLAEKLSNSFKKLRSKGKLTEADVKEAMREVRLALLEADVNYKVAKEFTKKVTDRAVGSEVMESLTPAQMVIKIVNEELTSLMGGSEERLKMPAHPPAIIMMCGLQGAGKTTHAAKLAYQLKSQGHRPLLVAGDIYRPAAIKQLQVVGEKAGAPVFERGTQDPVLTAQEAVRHAKDYGNDYVIIDTAGRLQIDEQLMDELHRIKEAVSPTDILLVVDAMTGQEAVNVAKAFDDLLDITGVILTKLDGDTRGGAALSVKAVTGKPIKFAGTGEKIGDLEVFHPDRMASRILGMGDVLTLIEDAQQRLDEKAAQKTAQRLMQNKMDLNDLLEQFQQVKKMGPIKGILSKLPGVGNKLDDVDIDDRIMDRSAAIILSMTPYERSHPDCLNASRKKRIAAGCGMKVEDVNRLLNQFRQTQKLMKQFGGMGKGKRRRMPNLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y413</accession>
    <name>R6Y413_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Energy-coupling factor transporter ATP-binding protein EcfA2</fullName>
            <ecNumber evidence="6">3.6.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01918</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Forms a stable energy-coupling factor (ECF) transporter complex composed of 2 membrane-embedded substrate-binding proteins (S component), 2 ATP-binding proteins (A component) and 2 transmembrane proteins (T component).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cell membrane</location>
            <topology evidence="2 6">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC transporter superfamily. Energy-coupling factor EcfA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.3.-" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30713">
        <property type="protein sequence ID" value="CDD30713"/>
        <property type="gene ID" value="BN815_01918"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030946">
        <property type="entry name" value="EcfA2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04521">
        <property type="entry name" value="ECF_ATPase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="31925" checksum="3B100C514AB71F4D" modified="2013-07-24" version="1">MAIIETKDLAYRYSPGTPFEKTAVDGVNIQVEKGEFLGVIGHTGSGKSTLIQMLNGLLRPTSGQVLLNGKDIWAEPKKIRAVRFQVGMVFQYPEYQLFEETVLKDIMFGPKNMGLTDQEAETRAREAAHFTGLKEELLEKSPFELSGGEKRRAAIAGVIAMDPEVLILDEPTAGLDPRGRDVLLAQITQYHKARGNTVLLVSHSMEDIGRTADRILVMNHGHAAMLDETKKVFARGPELEEMGLRVPQITKIMQELVAMGLPVDASTLTVDDALHQLIPILKRKEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y455</accession>
    <name>R6Y455_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13 14">UvrABC system protein B</fullName>
            <shortName evidence="13">Protein UvrB</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Excinuclease ABC subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">uvrB</name>
        <name evidence="18" type="ORF">BN815_01947</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 13">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11 13 14">Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="13">The beta-hairpin motif is involved in DNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30743">
        <property type="protein sequence ID" value="CDD30743"/>
        <property type="gene ID" value="BN815_01947"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00204">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004807">
        <property type="entry name" value="UvrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024759">
        <property type="entry name" value="UvrB_YAD/RRR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24029">
        <property type="entry name" value="PTHR24029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12344">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00631">
        <property type="entry name" value="uvrb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 13 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 13 14" id="KW-0228">DNA excision</keyword>
    <keyword evidence="9 13 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 13 14" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13 14" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="16">
        <location>
            <begin position="30"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="17">
        <location>
            <begin position="434"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="15">
        <location>
            <begin position="622"/>
            <end position="657"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Beta-hairpin" evidence="13">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD30743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="671" mass="76821" checksum="0F1EBA18E899BDE7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4D0</accession>
    <name>R6Y4D0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00932</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28720">
        <property type="protein sequence ID" value="CDD28720"/>
        <property type="gene ID" value="BN815_00932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010387">
        <property type="entry name" value="QueT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40044">
        <property type="entry name" value="PTHR40044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06177">
        <property type="entry name" value="QueT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031501">
        <property type="entry name" value="QueT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="178" mass="18384" checksum="C3B6D1145AF80301" modified="2013-07-24" version="1">MNTSKKVRFLALGAVIAALYAVLTYVAAAVNLAYGPVQFRFSEALTVLPVFTPAAIPGLTLGCVIANLGSPLGVVDWVFGPLATLLAALATYLVRDVKVKGLPILAPLPPVITNVVIVGFELACLSDAGTFGLGNFTWAAFGTSALSVGIGELVVCYVLGLPLILALERTKAVSRLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4X4</accession>
    <name>R6Y4X4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28925">
        <property type="protein sequence ID" value="CDD28925"/>
        <property type="gene ID" value="BN815_01001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010699">
        <property type="entry name" value="DUF1275"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06912">
        <property type="entry name" value="DUF1275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="236" mass="26057" checksum="8BCF115AB2E00BFD" modified="2013-07-24" version="1">MEAKKKYLVCERRSVFALLTLSAGMMGAYTFNLRGGVFCNAQTANVVLMAIAFGSGEWGQGCYYLIPITAYLAGAFLSEILPSPVRRFGFLRWDTYLVAFEFLALFSIGFIPLGWPHQLVQVLVNFIASMQYNTFRQAEGIPMATTFCTNQLRQVGVGFAKALRKHDREGLSRALFFLGMLGCFFAGGVLSTLACHLVFAKAIWLNLLPLGIVLVRLVHADLTEEKGLLSQKPAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Y1</accession>
    <name>R6Y4Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02137</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30978">
        <property type="protein sequence ID" value="CDD30978"/>
        <property type="gene ID" value="BN815_02137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="27188" checksum="8827F35B1DD09A1F" modified="2013-07-24" version="1">MRSLPFTGGDTELRQELEKLADPGYKTFHEGLIPGASMSYGVRLPDMRALAQKVLRGDPVSFLKGTHPASYEETMVRGLVVAGLKLPWEEKRPWVEDFLPRVGNWAVCDSFCNSLAPRFPEDGAALWDFLRPLYPDSREYYARVACVVQLSHFVDSEHLEEGLPLLQQVKHPGYYAKMAAAWALSEWYVKFPQAVGQLLAQQTLEPWVQNKAIQKVRESRRVSKAEKDALLRYKLQPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5B6</accession>
    <name>R6Y5B6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron dependent repressor DNA binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01040</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000119">
        <property type="protein sequence ID" value="CDD29050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29050">
        <property type="protein sequence ID" value="CDD29050"/>
        <property type="gene ID" value="BN815_01040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001367">
        <property type="entry name" value="Fe_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036421">
        <property type="entry name" value="Fe_dep_repressor_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02742">
        <property type="entry name" value="Fe_dep_repr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47979">
        <property type="entry name" value="SSF47979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe_dep_repr_C" evidence="1">
        <location>
            <begin position="10"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7919" checksum="A00CBBE139607518" modified="2013-07-24" version="1">MDSDYFLHLTNVGREVAEQIYEKHRFFTERLIAAGVDPETAERDACRIEHVISEESFKRLKASSEQMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5E4</accession>
    <name>R6Y5E4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Queuine tRNA-ribosyltransferase</fullName>
            <ecNumber evidence="4">2.4.2.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Guanine insertion enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-guanine transglycosylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">tgt</name>
        <name evidence="6" type="ORF">BN815_02307</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>7-aminomethyl-7-carbaguanine + guanosine(34) in tRNA = 7-aminomethyl-7-carbaguanosine(34) in tRNA + guanine</text>
            <dbReference type="Rhea" id="RHEA:24104"/>
            <dbReference type="Rhea" id="RHEA-COMP:10341"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:58703"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="EC" id="2.4.2.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the queuine tRNA-ribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.29" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31163">
        <property type="protein sequence ID" value="CDD31163"/>
        <property type="gene ID" value="BN815_02307"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008479">
        <property type="term" value="F:queuine tRNA-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0101030">
        <property type="term" value="P:tRNA-guanine transglycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00168">
        <property type="entry name" value="Q_tRNA_Tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004803">
        <property type="entry name" value="TGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002616">
        <property type="entry name" value="tRNA_ribo_trans-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01702">
        <property type="entry name" value="TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="SSF51713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00430">
        <property type="entry name" value="Q_tRNA_tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00449">
        <property type="entry name" value="tgt_general"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGT" evidence="5">
        <location>
            <begin position="11"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="89"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding" evidence="4">
        <location>
            <begin position="252"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="376" mass="42564" checksum="C470EBA3C910A68D" modified="2013-07-24" version="1">MYHLIKQEGAARRGRFETVHGTVQTPAFMNVATAGAIKGAVSAYDLKDLHCQVQLCNTYHLHLRPGDETVKKLGGIRKFTGWDGPVLTDSGGFQVFSLAKLRNIKEEGVTFASHVDGHKIFMGPEESMRIQSNLGSTIAMAFDECVENPATYEYAKASCERTARWLERCKKEMARLNSLEDTINPHQLLFGINQGCTFEDLRVEHMKRIAELDLDGYAIGGLAVGEPTEEMYRIIEAVEPHMPKDKIRYLMGVGTPANILEAVRRGVDLFDCVMPSRNARHGHAFTWEGCRNLLNAKYELDEAPLDENCQCPVCQKFSRAYIHHLFKAGEMLAMRLTVMHNLYFYNHLMECIRDALDAGQYEPFYQEHIEALGKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Q0</accession>
    <name>R6Y5Q0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02411</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31268">
        <property type="protein sequence ID" value="CDD31268"/>
        <property type="gene ID" value="BN815_02411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13705" checksum="FD9AFC110131C6A0" modified="2013-07-24" version="1">MENREEERKLLDAAGAEGRVLSMKDGGQEVGYAIVDLQEGTLLLRKLAAKGYDFTQPPRGEELFILDTLMRSAASWGEDHGAEAIATCFPDFFSFFKARGFTVDEEHAFTPMNTIVRYELGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5R0</accession>
    <name>R6Y5R0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01096</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29225">
        <property type="protein sequence ID" value="CDD29225"/>
        <property type="gene ID" value="BN815_01096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="168"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="271" mass="31041" checksum="2B43653C70680890" modified="2013-07-24" version="1">MKTPLISQMRYSQADQTPHSHYHLSCEMVFVSAGAAEFVIDGKSYVAEENSLVFISSYEQHEVRVRRRPYRRYFAMVQAAEVERAFPSSPLPGIFQNRPQGFSHCVSLGGAAPEPERLFARLLAEWDSPAPYGEPMVRALLEEVLIHVYRACPQNFAPLETGAAGRVREVQRYIESHFAEDLRISDLAKAFYMNHCYMTHLFKKQVGYSPKQYLLLNRLSYAQELLENSDLPVSQIAFQCGFGDANNFIRAFRESFGLSPSQFRQREGRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5T5</accession>
    <name>R6Y5T5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01109</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000137">
        <property type="protein sequence ID" value="CDD29250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29250">
        <property type="protein sequence ID" value="CDD29250"/>
        <property type="gene ID" value="BN815_01109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="4">
        <location>
            <begin position="131"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="34782" checksum="1AA49CAEE00FB116" modified="2013-07-24" version="1">MEERLQKFTHQERLARKEREEERKQQERFQKIQQKVEHQLNTISRQDPHGSRLLKKKMKAVKSLEHRFEREREDMTEFPDSEEAILVGFGENTAIPAGKTVLDFTLPALYAGEASQGQPPLAENLRLYVRGGEHVCVIGRNGAGKTTFLRQVAGELLGRQDIRAAYMPQDYGETVDQSQTPVEFLAKSWEKEELTRVKTYLGSMKYTPEEQEHTIQELSGGQKAKLFFLKMILDGANVLVLDEPTRNFSPLSGPVIRGILEEFPGCILSVSHDRKYIGQVCDTVYQLEPQGLVPLENPWRETAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5U6</accession>
    <name>R6Y5U6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00253</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000397">
        <property type="protein sequence ID" value="CDD31318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31318">
        <property type="protein sequence ID" value="CDD31318"/>
        <property type="gene ID" value="BN815_00253"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="26"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="360"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="394"/>
            <end position="401"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="606" mass="67608" checksum="8A6589CAFB3443F7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6Y2</accession>
    <name>R6Y6Y2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Type I phosphodiesterase/nucleotide pyrophosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000445">
        <property type="protein sequence ID" value="CDD31728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31728">
        <property type="protein sequence ID" value="CDD31728"/>
        <property type="gene ID" value="BN815_00454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002591">
        <property type="entry name" value="Phosphodiest/P_Trfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01663">
        <property type="entry name" value="Phosphodiest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="29324" checksum="312A78F7F049BBEF" modified="2013-07-24" version="1">MNNAISMTQFAATMAASMGIPAPKAGGAPFSMLGETMKHQGLSTAKRVLIYNPDAVGMWLFQKYTTWFAPVLRHTQLGVPIRTVMPSVTPVCFGTMYTGVEPAVHGIQKYEKHLLKQESLFDCLAAAGKKTALVAVADSSMAVLFQEREGIDYYILPYDGEVTDKAVALIQEGSYEVVVVYNQEYDDVMHRTFPESEESLQALKNHIAAFDRLCTAAEESWDTEDSLVVWATDHGIHTNENGHGAHGSDLEEDLNVMHFFGAWKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7M9</accession>
    <name>R6Y7M9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Histidinol phosphate phosphatase HisJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27304">
        <property type="protein sequence ID" value="CDD27304"/>
        <property type="gene ID" value="BN815_00576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHP" evidence="1">
        <location>
            <begin position="8"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="97" mass="11254" checksum="C563B8DAA4203019" modified="2013-07-24" version="1">MRYRFACDCHNHSSCSPDGNDTVLEMRRRAQELGLWAHTLTDHCECQKFPDRYRPRVERAWEKMALEIPQGGSTRFYRGIELGQPNQDLEAAEQALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8A7</accession>
    <name>R6Y8A7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4097 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01405</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30160">
        <property type="protein sequence ID" value="CDD30160"/>
        <property type="gene ID" value="BN815_01405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025164">
        <property type="entry name" value="DUF4097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13349">
        <property type="entry name" value="DUF4097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425629" description="DUF4097 domain-containing protein" evidence="1">
        <location>
            <begin position="31"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4097" evidence="2">
        <location>
            <begin position="42"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="23069" checksum="CDD6E3814F58BD5C" modified="2013-07-24" version="1">MKKKIAWALCLGLGCLTLAGCSGNSEPFEAKTYTPEGQVQGVQLDVEDREVEVALSPDEQVHIQYGENSKEFYEIALTDGNVLTMTSATNKEWTDYIGVSASSEDRKITVQVPDGLLDSLEISTTNEDITLPALAVTGSISLSSNGGDVSFGNLSVGSGLALNSKNGDITGTVVGSYDGFAITSNVKKGESTLPDAKEGGEKTLDVTCNNGDVEVSFVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8B4</accession>
    <name>R6Y8B4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00036</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27499">
        <property type="protein sequence ID" value="CDD27499"/>
        <property type="gene ID" value="BN815_00036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="6">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-serine intermediate" evidence="4 5">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606118-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="180" mass="20640" checksum="AF13430DAEF69AAF" modified="2013-07-24" version="1">MKIGYIRVSTQEQNTIRQEVMMKELGVEELYLDKASGKNTDRPQLQKMMEYVRRGDTVIVESISRFARNTRDLLELIEQLTAKGVEFVSKKEAIDTTTPTGKFMLTVFGAVAELEREYILQRQREGIAIAKQQGKYKGRKPLAQPGFQETAARWKRGEITAAEACRWLGISKASFYRKVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8I0</accession>
    <name>R6Y8I0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00658</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27569">
        <property type="protein sequence ID" value="CDD27569"/>
        <property type="gene ID" value="BN815_00658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="199"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="231"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="305"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="331"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="351" mass="37992" checksum="0B4DBF61139E82FB" modified="2013-07-24" version="1">MNKAFLRGLVVAAVLLINCTLLSGFIERQMTVPVRECSPRYDIAVGSQRIPGDAIRWEDGQSFLYAIQEGQGLTAGLWAKRVPVNVIGTEGAAAFVMEDESQEYVLYGSRPFQDGERVLPVEEGRAQPDTLLLWMPAGAAPLEEGVTIPLGEGEATLYSREVTQPFLAERELAQLVPEELRAQSAVISCQELETLLNGLPWLAGAALLALATLLLAILFCAALGQARRWPWYLGCGVACLLAWAGLVLVLGRTQLPSSLLPTGNIFAWGHYSNLFRLAEEGLAAFAENARCAELLNLLGQRQREAMLLLAGGAALLCLLLVTVRMYLRRSSGSHARGGGLPSFRKEGSDKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8X8</accession>
    <name>R6Y8X8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glucose-6-phosphate isomerase</fullName>
            <shortName evidence="7">GPI</shortName>
            <ecNumber evidence="7">5.3.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Phosphoglucose isomerase</fullName>
            <shortName evidence="7">PGI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
            <shortName evidence="7">PHI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgi</name>
        <name evidence="9" type="ORF">BN815_01596</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the GPI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30375">
        <property type="protein sequence ID" value="CDD30375"/>
        <property type="gene ID" value="BN815_01596"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05016">
        <property type="entry name" value="SIS_PGI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00473">
        <property type="entry name" value="G6P_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035482">
        <property type="entry name" value="SIS_PGI_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="PTHR11469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00662">
        <property type="entry name" value="G6PISOMERASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00174">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="446" mass="49158" checksum="175E77184DB655CE" modified="2013-07-24" version="1">MPLKLESSYLNGFVSQHEYEAIAPQVETAHQLLMSKTGMGNDFLGWVNLPTAYDKEEFARIKAAAKKIQGNSDVFVVIGIGGSYLGARAAIEFLKSEKYNDLRKDTPAIYFAGNSISSTALAELVQICEGKDISINMISKSGTTTEPAIAFRVFRELLEKKYGKEGARERIFCTTDKAKGTLKHLADEEGYETFVVPDDVGGRYSVLTAVGLLPIAVAGADIDALMGGAQKAMELYNNPSLEENDCYKYAAIRNILYNKGKCTEVMVSYEPCYAMMNEWWKQLFGESEGKDNKGLFPASVIFSTDLHSLGQYIQDGRRTLFETVVLIDEPKHQIALGNDPTDVDGLNYLEGRTMAFINEKAFEGTVLAHNDGGVPNVVIHASDFSEDTLGQLIYFFEKACAISGYLLGVNPFDQPGVESYKKNMFALLGKPGYEEAKAALEKRLSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y989</accession>
    <name>R6Y989_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Ferrous iron transport protein B</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_01692</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Probable transporter of a GTP-driven Fe(2+) uptake system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000256">
        <property type="protein sequence ID" value="CDD30475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30475">
        <property type="protein sequence ID" value="CDD30475"/>
        <property type="gene ID" value="BN815_01692"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015093">
        <property type="term" value="F:ferrous iron transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01879">
        <property type="entry name" value="FeoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003373">
        <property type="entry name" value="Fe2_transport_prot-B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011640">
        <property type="entry name" value="Fe2_transport_prot_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041069">
        <property type="entry name" value="FeoB_Cyto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030389">
        <property type="entry name" value="G_FEOB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07664">
        <property type="entry name" value="FeoB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17910">
        <property type="entry name" value="FeoB_Cyto"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02421">
        <property type="entry name" value="FeoB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00437">
        <property type="entry name" value="feoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51711">
        <property type="entry name" value="G_FEOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0410">Iron transport</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="286"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="349"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="458"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="517"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="555"/>
            <end position="572"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="579"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="623"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="654"/>
            <end position="674"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="680"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="domain" description="FeoB-type G" evidence="11">
        <location>
            <begin position="2"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="725" mass="78427" checksum="71A1EBADC67E1EF9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9G5</accession>
    <name>R6Y9G5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01738</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30525">
        <property type="protein sequence ID" value="CDD30525"/>
        <property type="gene ID" value="BN815_01738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="5">
        <location>
            <begin position="2"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="137"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="221" mass="23843" checksum="AAD243786FFA4C30" modified="2013-07-24" version="1">MRMVIVGGGKVGWNLARIMLERRHNVSLIEKDRQRCERLADDLDAAIYRGDGTNVGVLEAAGAQNADVFMTVTGSDQDNLVACQVARDHFHAKKVISRVNDPRNIETFQVLGIGNTACSTEILTKMIEQEADLAHMHLIATLNQGKAGICSMTLPSNTALDGVALKDIDLPGGTLVISLIRRGVLTIPNGSTTLQAGDELVAVSEERSQKALMRALAETVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9J5</accession>
    <name>R6Y9J5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01773</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30560">
        <property type="protein sequence ID" value="CDD30560"/>
        <property type="gene ID" value="BN815_01773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="22851" checksum="961D393BEF173761" modified="2013-07-24" version="1">MNTPRLETERLVLRRFEPSDLQAFFQIFSDGEVNRFLPWFPVRDLEEAQAFYQQRYAPVYAKAQGYAYAICRKEDNVPIGYVNGETEGARDFGYGLRKEFWGQGIVTEASRAVLAQMKEDGVPFVTATHDRENPGSGKVMQKLGMVYHYSYREQWQPKDISVVFRMYQLNLDGGNNRVYRAYWDKFPEHFVETEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Q5</accession>
    <name>R6Y9Q5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histidine phosphatase superfamily (Branch 1)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000290">
        <property type="protein sequence ID" value="CDD30635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30635">
        <property type="protein sequence ID" value="CDD30635"/>
        <property type="gene ID" value="BN815_00146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="26073" checksum="C408E0EF59E74943" modified="2013-07-24" version="1">MKSYVIHLIRNMPCQGNLEGRYIGRTDSPLADASLGELLELKTKFRYPRATAFYASPSTRCVDTLRILYPEADPEVILEMAECDFGQWEGKTAQELQNDPRFLQWMEEGGNAAPPEGESGLVFLQRVCRGFETLVQNVMAKGQRETVLVTHAGVITGLLSAYGVPQAQPTQWMCQPGCGYSVRITPSLWMRSMVMEVYQTLPLGEDGRQPDHLVVDIAREAASRAWGQEQQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA58</accession>
    <name>R6YA58_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcription termination/antitermination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nusA</name>
        <name evidence="9" type="ORF">BN815_00154</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Participates in both transcription termination and antitermination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NusA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30805">
        <property type="protein sequence ID" value="CDD30805"/>
        <property type="gene ID" value="BN815_00154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_B">
        <property type="entry name" value="NusA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025249">
        <property type="entry name" value="KH_dom_NusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="NusA_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036555">
        <property type="entry name" value="NusA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013735">
        <property type="entry name" value="TF_NusA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010213">
        <property type="entry name" value="Tscrpt_termination_fac_NusA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="PTHR22648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13184">
        <property type="entry name" value="KH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08529">
        <property type="entry name" value="NusA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69705">
        <property type="entry name" value="SSF69705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01953">
        <property type="entry name" value="NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="5 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 7" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="144"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="360" mass="39830" checksum="8D6F9B5B28DA374E" modified="2013-07-24" version="1">MAKKKEPEKQGNEELFLALNLLEKEKGIPVEFMLDKIKKAISTACKNNYGNEDVDIDVDPEKGVFNVYLRKEIVEEVEDPNRQYLLDKAKQVDPTACVGRFVRIKLDTKQFGRVAAQTARNIIRQGIRDSERGQMMQEFQSKHQELVSGLVERIDPRTGAISLKIGKAEAVLPKNEQIGGENVKEGDYIKVYVVDVRETEKGPKAIISRTHPDLVKRMFETEVPEIYDGTVEIKAVSREAGSRTKLAVMSHNPDVDAVGACIGTRGSRVSEIVDELGGEKIDIVEYSDEPEKFIAAALSPANVLSVETAADGSRSCKVTVPDNQLSLAIGNKGQNARLAAKLTGWKIDIKPESGFYGEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAE8</accession>
    <name>R6YAE8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Aminotran_1_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02062</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000339">
        <property type="protein sequence ID" value="CDD30900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30900">
        <property type="protein sequence ID" value="CDD30900"/>
        <property type="gene ID" value="BN815_02062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="47"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="402" mass="45296" checksum="3AB8315E2651AA6B" modified="2013-07-24" version="1">MKYDFTSIIDRHGKDAIAVDGLVPGGHGPQPPKEGFDIIPMWVADMNFPTVPTITQAIAQRIQHPFFGYFATSDDYYNAIIHWQEQRNGVTGLTKECIGYENGVLGGVISALNVLCSKGDNVLLHSPTYIGFTGCLTNNGYHIVHSPLVKDEAGIYRMDFADMEKKIVENNIHATVFCSPHNPCGRVWERWELEKAMELFQKHDVMVICDEIWSDIILEGHKHIPMQSISEDARQRTVALYAPSKTFNLAGLIGSYHIIYNKALRDRVDKESSLSHYNSMNVLSMHALVGAYTQEGSDWVDELRQTITGNVDYACGFIAQHFPGVKVQKPQGTYMLFLDCTEWCEAHGKTIDQVQQAGWDVGVAWQDGRAFHGPCHIRMNLALPLSRVQEAFDRLQKYVFVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN8</accession>
    <name>R6YAN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M29 aminopeptidase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00830</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M29 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28344">
        <property type="protein sequence ID" value="CDD28344"/>
        <property type="gene ID" value="BN815_00830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035097">
        <property type="entry name" value="M29_N-terminal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000787">
        <property type="entry name" value="Peptidase_M29"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02073">
        <property type="entry name" value="Peptidase_M29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00919">
        <property type="entry name" value="THERMOPTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="409" mass="45878" checksum="0EAE39FF73A3FD8C" modified="2013-07-24" version="1">MKKTVMRKYAQLAVRRGAHVKKGQGCVIYAQVEQHEFAQLVAEEAYRAGAKWVEMRWEDQVCTKLKYRHETLTQLSQVAEWEKARMQHYVDTLPAMIHISSADPDGLKGVNVEKMQKSGAARGMALKSYHDALDNKYQWCIIAVPSKKWAKKVFPGERTSAAVEKLWEAILQTVRVTEDNDPMAEWEAHDRGLKAHCEKLNALDLDYLHYQAPNGTDFKCWLIPEAQWHGGGDTLPDGTFFDPNMPTEEVFTSPMRGRCEGTLVSTMPLSYQGNLIDKFSVTFENGRVVSCQAEQGQALLERMVAMDEGAAMLGELALVPVESPIYQQGILFYNTLFDENAACHVALGRGFNEVIPGFDTMSGEELKAKGINDSIIHVDFMVGCKELSITGYTREGKAVQIFKNGTWAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAW3</accession>
    <name>R6YAW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31025">
        <property type="protein sequence ID" value="CDD31025"/>
        <property type="gene ID" value="BN815_02179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="369" mass="41995" checksum="5C399AB623651D7C" modified="2013-07-24" version="1">MGKRILAICCTPYQLLVAAQVLACYYPGEEADLILSDQMSGARKLWEQAKDIWPYGQVYYLEERRLNRLAHKENAKNILLGAVAPEKLLERFLHLEGSYGVFLFSNISLMNQYLILALKRRNPRLQWLLFEDGATTYSQQVGGLVQSTSPKVRVQLHQVQKLQGMYLFHPETLDWKPGCPVHKLPQAYAPATLELLNRLFRYDKLGDRYDFPVVFFEESYPCDGVDIGDVALLDRVAKLVGKENVLVKTHPRNQVNRFALAGYRTNQDTSVPWELVALNHSFAGTVFLTVGSSAATNPWCVLGIPAKAVFLWELVEEPSKLRWDVLEQTKRLCQANPELFFCPKTWEECERLLSRLVVEQAAPGAAMAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB38</accession>
    <name>R6YB38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribose-5-phosphate isomerase B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02258</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31105">
        <property type="protein sequence ID" value="CDD31105"/>
        <property type="gene ID" value="BN815_02258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004785">
        <property type="entry name" value="RpiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005384">
        <property type="entry name" value="RpiB_LacA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01120">
        <property type="entry name" value="rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00689">
        <property type="entry name" value="rpiB_lacA_lacB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005384-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="16078" checksum="33BAC5B5E4EEABDF" modified="2013-07-24" version="1">MKIAIGCDHGGFELKEAVRGYLEERQIPYEDFGAYNTDSVDYAPIAAKAARAVAAGQADFGVLVCSTGIGISMAANKVKGIRAALCTNEFCAEMTRRHNNANILCMGGKVIDKETAVKLVDIFLHTEFEGGRHQRRIDQIAQIEEGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBD2</accession>
    <name>R6YBD2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L34</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmH</name>
        <name evidence="7" type="ORF">BN815_00865</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL34 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28524">
        <property type="protein sequence ID" value="CDD28524"/>
        <property type="gene ID" value="BN815_00865"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00391">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000271">
        <property type="entry name" value="Ribosomal_L34"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14503">
        <property type="entry name" value="PTHR14503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00468">
        <property type="entry name" value="Ribosomal_L34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01030">
        <property type="entry name" value="rpmH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="26"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="44" mass="5452" checksum="84532A08CCD0F4F5" modified="2013-07-24" version="1">MLRTYQPKKLHRKKEHGFRKRMSDRNGRKVLARRRAKGRARLTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBH8</accession>
    <name>R6YBH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Resolvase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00218</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31280">
        <property type="protein sequence ID" value="CDD31280"/>
        <property type="gene ID" value="BN815_00218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025827">
        <property type="entry name" value="Zn_ribbon_recom_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13408">
        <property type="entry name" value="Zn_ribbon_recom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="2">
        <location>
            <begin position="20"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="3">
        <location>
            <begin position="174"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="426"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="503" mass="58245" checksum="C2FFF028381A3939" modified="2013-07-24" version="1">MAGRITQVTFGSPQLPRDKNVAAYCRVSSGKDAMRHSLAAQVSYYSELIQNHAGWEYAGVYADEAVTGTKDSRKNFKRLLSECRAGKIDMVITKSISRFARNTVTLLETVRELKTLGVDVYFEEQNIHSLSADGELMLTILASYAQEESRSASENQKWRIKKNFEEGKPWSSTLLGYRNVNGRYEIVPEEAETVRMIFAWYLEGAGATTIRNRLNAMGIKTRLGNSWSRSPILKLLRNYAYTGNLILQTTYREDYITKRSVKNNGEKPMYHAQGTHEAIIDMDTFNRAQEEIQRRAEHFASPDGNKSTARYPFTSMVKCSRCGKSYVRSGSPKYRTWTCHTRRKDGLNCCGAEIIPEEELFRLTAEVIGGKVTEDAVRDKITVIRAEKDRTLVFCLKDGKETVKQWREHEIKYICTEEQKRQISLKNSGRKRTDEQKRQQSERMKEYWKTHEFTEEQRRLISEKKKAYWSDREASAEHREMLRQRMKEVRTMRKNGGKEENDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDR8</accession>
    <name>R6YDR8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01151</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29434">
        <property type="protein sequence ID" value="CDD29434"/>
        <property type="gene ID" value="BN815_01151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="139"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="259"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="72"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="32835" checksum="C3553897D3005BC4" modified="2013-07-24" version="1">MVEKGKGFQIFANVLLALLSICAVAPFILLIMSSFTDEQVLISNGYSFFPAKFSTYAYEYLLTDSTSVIRGYGISFLITAVGTVCNLLLTTLYAYPLSRRDLPGRNGFAFYLFFTMLFSGGLVPSYMMWTQTFHIRNTLWALLIPGLMMGAFNVIMMRTYFTQNIPDAVIEAARIDGANEFRILYGIVLPMALPIIATIGMLVGLAYWNDWMNGLYYINDDNLYSIQVLLQKIQRNLDQLRQQAQGGGNMNAAELPSTAVRMALTVMGVLPIMVIYPFVQKWFVQGIAIGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDY8</accession>
    <name>R6YDY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01171</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000153">
        <property type="protein sequence ID" value="CDD29494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29494">
        <property type="protein sequence ID" value="CDD29494"/>
        <property type="gene ID" value="BN815_01171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_14" evidence="1">
        <location>
            <begin position="21"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4143" evidence="2">
        <location>
            <begin position="202"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="47560" checksum="1EB0618D1BB892D0" modified="2013-07-24" version="1">MKKYRKRVADEILKRKLEGKGAVLIEGPKWCGKTTTAEQFSASVLYMDDPERKEQNITMSELNPRRLLNGAVPRLIDEWQLAPKLWDAIRFEVDHRGELGQFILTGSAVPVDTREITHSGTGRFTWLTMRPMSLYESGDSTGDVSLSELFTGKTEIDGESNLSIDRLAFLVCRGGWPQSVDMRDEIALDQAMDYYDAVVHADINRADNVQKNPERVRRLMRSYARNQGGQVPNTVIAQDIAANDETPISEETVASYVNALRKIFVVEDMPAWNPNLRSKTAIRSSDTRYYIDPSIAAAALGIGPNDLVNDLHTFGFLFETLCVRDLRVFADALNGEVYHYRDKDGQECDAVIHLRNGKYGLIEMKLGGDTLIEEGVRSLKSMAAKIDTDKMHAPSFLMVLTGTGDYAYRRHDGVYVVPIGSLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEE5</accession>
    <name>R6YEE5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29674">
        <property type="protein sequence ID" value="CDD29674"/>
        <property type="gene ID" value="BN815_01219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="38995" checksum="4DC2399B5AC75D4E" modified="2013-07-24" version="1">MALDWLRRNRERDNWFLHVHFWDPHTPYRAPESFGNPFAEVPLDSWIDETVLEEHKKAVGPHGINELGMYTDQIAPGYPRMPGSAQDMAGLRRVMDGYDTGILYADYLVGQLLDLLKEQGLYEDTAIFITSDHGENMGELAIYSEHGTADYPTCHIPFIMKWPGCKAGSVDSGLHYSLDLLPTMAQLLGVEPWEKWDGQSFAPAVTEGKAAGREYLVLSQMAHVCQRSARFGDWIYIRTLHDGYHLFDREMLFNVKEDPHEQRDVKALHPEVCAQGAKLILDWQEEQMLKSPSPVDPMYTVLHEGGPYHTRGHLQEYAQRLEQTGRAQGAQELRRRHPNEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEF2</accession>
    <name>R6YEF2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YqaJ viral recombinase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01222</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29684">
        <property type="protein sequence ID" value="CDD29684"/>
        <property type="gene ID" value="BN815_01222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017482">
        <property type="entry name" value="Phage_endonuclease_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019080">
        <property type="entry name" value="YqaJ_viral_recombinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09588">
        <property type="entry name" value="YqaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03033">
        <property type="entry name" value="phage_rel_nuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YqaJ" evidence="2">
        <location>
            <begin position="18"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="247"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="345" mass="39339" checksum="A846280F99C62072" modified="2013-07-24" version="1">MASPIILCDCAGMANDRWLECRAHGPKGDIPYTVGGSDVAAIFGLSPWTTPLELWLIKKGRMKAPVKSNEDQLEMGHLLEPIAAHWFEKKTGNLVTDDTFLYQHADHPYALANIDRRYTRQEDGEPGILECKSCTYHKAEDWADDAIPLYYELQLRFYLAVLDVEYGAFSCVWGNNPGTDLAMPEIIRDKAKEDMIFERLEQWVWSLEHDKPPTMEDVKPKLALESLARIYGASLPGLPTVEFSPKYERSLRQIALLQEKIASCNQEIKTYEKEMEAHSVRIAEVMKEHEHGVLTTTKDKLLIDFVTRTTKRPDSKALKEKYPSVYSDVLKVSESRKVKVHIEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEX2</accession>
    <name>R6YEX2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Site-specific recombinase phage integrase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00516</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27141">
        <property type="protein sequence ID" value="CDD27141"/>
        <property type="gene ID" value="BN815_00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12494" checksum="B11135CF5954A933" modified="2013-07-24" version="1">MAAKVDVKSLPACPVETTLTLIGDKWKVLILRDLMPGTKRFGELKKSIGSVSQKVLTAQLRDMEQNGLVHREVFAEVPPRVEYSLTELGRSLKPILDAMWNWGEEFKARNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF40</accession>
    <name>R6YF40_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00542</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000025">
        <property type="protein sequence ID" value="CDD27216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27216">
        <property type="protein sequence ID" value="CDD27216"/>
        <property type="gene ID" value="BN815_00542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="270"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="74"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="316" mass="35425" checksum="06794F1D70E3F8D8" modified="2013-07-24" version="1">MNKKPKHLSYAKWGYLFILPFFIAFFIFSFIPLLDTVRYSFFEYYRSGIKEVGPNFVGLANYKSLLDSDMLKYAGNTLILWLIGFIPQIVIALLLANWFTDMRLKLRGKQFFKVVIYLPNLIMASAFAMLFFALFSTNGPINSILMSMGLTKTPIDFMGTAFGTRSLIGLMNFLMWFGNTTIMLMAAIMGISPDIFEAAELDGCGSVRRFFSITLPLIRPILAYTLITSIIGGLQMFDVPQILTNGQGNPDRTSMTLIMFLNSHLKSRNYGMAGALSVYLFIVSAVLCFFVYRMTNGKQDGGAPKKSRNHKGGANA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF72</accession>
    <name>R6YF72_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Tellurite resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01330</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TelA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000186">
        <property type="protein sequence ID" value="CDD29989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29989">
        <property type="protein sequence ID" value="CDD29989"/>
        <property type="gene ID" value="BN815_01330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008863">
        <property type="entry name" value="Toxic_anion-R_TelA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38432">
        <property type="entry name" value="PTHR38432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05816">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF026508">
        <property type="entry name" value="TelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="201"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="364"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR026508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="394" mass="44350" checksum="6882C9613F4B7279" modified="2013-07-24" version="1">MPDEIKLTMDAPVPQTPSLTLEGVETPSLTLTPEEAAPAPKQVQEDEISTLDESVLSPEERKVVDDFAEKIDLTNSTLVLQYGSAAQKKIASFSDTTLNNVRTKDLGEVGDQISQLVVELKGFDLEEEEKKGFFGFFKNTGNKLTAMKAKYDTAEVNVNKIAGALESHQVQLLKDIVMLDKLYEMNLSYHKELSMYIIAGKKKLKKERETTLVQLENKAKQTGLAEDAQAANDYAQMCDNFEKKLHDLELTRMVSVQMSPQIRLVQNNDKLMADKIQSTLVNTIPLWKSQMVLALGLAHSEQAVKAQREVSNMTNELLRKNAERLKMSTIETARESERGVVDMETLRQTNQSLIQTLDEVVKIQDEGRQKRREAEAEIGRLEGELKQKLLDIHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFB6</accession>
    <name>R6YFB6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00573</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27301">
        <property type="protein sequence ID" value="CDD27301"/>
        <property type="gene ID" value="BN815_00573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="152"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="219"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="437" mass="48901" checksum="1860A63EAD36C8D7" modified="2013-07-24" version="1">MAVKITVQKNGQKKTPWRQRVSLRWALVLTTVLCALGAFLLIALESWGLEWARDALYLKYITPYYADEMETGEYYSVSPDGTVLYVEATMPYAYVDPDTGEIYPIETTSPTLFIPAGPLRFFYKNVWQIALCAFVITAALAFLADAWWFYHWKIKKPLAILNQAAQKIGQSDLDFHVESPSADELGKLCQSFETMRASLEENNRALWDAVEERKRLNAAFSHDLRTPLTVLQGYSDLLLDALPSGDLSPEKTVDTVLTMKRSLTRLQRYVESMNSLQRLEDVRPQKSTVPFSSLCAHLRETGEILGKGDFSFSSQGDGSAFLDTELLFQVYENLLSNAGRYAQKQVWVRAALEDGWLSLTVGDDGPGFPPAALKRAAEPYYRADKSLSPQGELHFGLGLYICRSLCEKHGGSLQIENSPAGGAKVTARFLVQSEENT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFC9</accession>
    <name>R6YFC9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dipicolinic acid synthetase B subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30019">
        <property type="protein sequence ID" value="CDD30019"/>
        <property type="gene ID" value="BN815_01345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="1">
        <location>
            <begin position="2"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="16927" checksum="B22D9394AB897806" modified="2013-07-24" version="1">MKTIGFAMCGSFCTFEKAVGQMEALSHSYAILPLMSQNAYTTDTRFGKAQDWVRRVEGIAGRPVLHTIVQAEPIGPKGLVDLLAVAPCTGNTLSKIAAGITDTPVTMAVKSALRIGIPVVLCCATNDAMAASGPNLLRLCIRPQPAAAAEHEKRLPGAPAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFK9</accession>
    <name>R6YFK9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00611</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27381">
        <property type="protein sequence ID" value="CDD27381"/>
        <property type="gene ID" value="BN815_00611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="80" mass="8883" checksum="E5F8817471EC25B1" modified="2013-07-24" version="1">MEISTATATEMQNNFGKYLSLVMAGQEVIVTRNGKEVGRFIPKDAAVSYLTDSLTGILKKDVNLDEVKAERLKEKYEVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFQ7</accession>
    <name>R6YFQ7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aspartate carbamoyltransferase</fullName>
            <ecNumber evidence="5">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Aspartate transcarbamylase</fullName>
            <shortName evidence="5">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrB</name>
        <name evidence="9" type="ORF">BN815_01409</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30164">
        <property type="protein sequence ID" value="CDD30164"/>
        <property type="gene ID" value="BN815_01409"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF16">
        <property type="entry name" value="PTHR11405:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="149"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="34804" checksum="7C8DFF3620D8F680" modified="2013-07-24" version="1">MRHLIDPLDFSRQETDRLLSLAEEIIARPGDYAHLCDGKILATLFYEPSTRTRLSFESAMMRLGGKVLGFSSAGSSSAAKGESVADTIRMISGYADIAAMRHFKEGAPYVAARYSHIPVINAGDGGHQHPTQTLTDMLTIRRKRGEISGVTIGLCGDLKFGRTVHSLIKSLVRYEGVNFIFISPEELRVPSYILKEVVIPSGHPWKEVRTMEEVMPELDILYMTRVQRERFFNEEDYVRLKDSYVLTQQKLDLGKADLAVLHPLPRVNEIAPEVDSDPRAMYFEQARGGVFVRMALILSLLGLAPGVLDHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGA9</accession>
    <name>R6YGA9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01620</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30399">
        <property type="protein sequence ID" value="CDD30399"/>
        <property type="gene ID" value="BN815_01620"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="21"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="31504" checksum="C13F7EC428E25198" modified="2013-07-24" version="1">MEQIVLSGFSDEIAPELDIQLAAIREWGLSHIELRAADGVNVSDFSPEKVEEVKAKLAAAGVSVSSIGSPLGKISIEEDFAPHLEKVKRTLEIQKELGAPYIRMFSFYLPEGQDPARFRGEVLERLHRMVEEAAAWDSVLLHENEKGIYGDNAPRCQDLLEQLAGPHFQAVFDFANFIQVGQETLPAYGLLKPYVAYVHVKDALLSTGAVVPAGQGDGHVRDILTDLLGGGWKGFLSLEPHLTDFAGLAALEQDPQKRGSALDGKSAWKLALDSLKEILAGIPQAKEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGD9</accession>
    <name>R6YGD9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mate efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30429">
        <property type="protein sequence ID" value="CDD30429"/>
        <property type="gene ID" value="BN815_01650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="309"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="386"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="411"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="445" mass="48100" checksum="D5EFA42F6AA8D8B7" modified="2013-07-24" version="1">MTKDMTTGSPMKLVLSFAIPLMFGNLFQQFYSMVDTIIVGRFLGTGPLAAVGSTGSINFLILGFCTGICAGFTIPVSQSYGAKDFQDLKRFVGNILWLASGFTLVITVLTVALCRPILQWMDTPADILDDAYSYIVVIFLGIPTIVLYNVLASLLRALGDSRTPVIFLVVASLLNIALDLFLIVVIPMGVAGAAWATVISQGISGLACLVFIWKKFPLLHVSRDDLVFRKDYARRLLGMGIPMGLQSSITAIGSILLQTSVNGLGSVVVASITAANKLYQLFSCVFDALGVAMSTYGGQNIGARRGDRIFAGLRAGMVIGSVYSLFSLVVVVFFGKPMTLLFVDASETVIIDQAYQFMVIQVAFFIPLTAVNVIRLLIQGMGYSKLAVFAGVFEMIARGGFGLFLVPVFGFNMACFASPAAWILADCFLIPAYRKVMRHVRQYGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGY1</accession>
    <name>R6YGY1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30614">
        <property type="protein sequence ID" value="CDD30614"/>
        <property type="gene ID" value="BN815_01825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="26739" checksum="08E2410C54C7279A" modified="2013-07-24" version="1">MKIQISDNLIKHYLRNVYFINGHSYAGKSTMVKLLAQRYGMIACGENYHDAFPREELSRWKQPGLCYFDTMSGWQEWLSMTPEEHWNWTSQVSQECVEIEILELVRLAAAGKKVVVDTNIPPDVLRGISSYHRVAILLCDPPDIAATRFFDRDDPDKQFMLEQIQRCPDPEATLRNFNGWAQYHPPEEIDWSGTGFFTYTRSDFDHDTREEMLAALAKHFQLEESLSNPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH66</accession>
    <name>R6YH66_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
            <ecNumber evidence="5">2.7.8.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Phosphatidylglycerophosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BN815_01924</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">This protein catalyzes the committed step to the synthesis of the acidic phospholipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a CDP-1,2-diacyl-sn-glycerol + sn-glycerol 3-phosphate = 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12593"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:60110"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="2.7.8.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Phospholipid metabolism; phosphatidylglycerol biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.5" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30719">
        <property type="protein sequence ID" value="CDD30719"/>
        <property type="gene ID" value="BN815_01924"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00084">
        <property type="reaction ID" value="UER00503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006655">
        <property type="term" value="P:phosphatidylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="12 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="14" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 16 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="156"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00014944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00033018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD30719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="23935" checksum="E1086A9DC3F821C4" modified="2013-07-24" version="1">MPQEKKPINQNLTVPNALSVLRIIVIPFFAWFFMHDQLAIAVALLVLSGLSDCVDGFIARKLNQVTELGKMLDPLADKLTQGVVALCLAIKFPVICPALLVFILKELVMLCGAILLLKKKKRPCAARWYGKVATVMFYVSVALIVVMDGFLHVEGVAFQVISYVLLGLTAAMMIYSAVKYAQIFLKILRSDDSQYDLSLTDEIRAKTVRDKRIKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHC0</accession>
    <name>R6YHC0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01983</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30779">
        <property type="protein sequence ID" value="CDD30779"/>
        <property type="gene ID" value="BN815_01983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="3"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="89" mass="9984" checksum="7C10922BB01D5869" modified="2013-07-24" version="1">MSTQELEQKVRELRQMQAIVEEAQAEVEALKDAIKAAMGQREELRAGEYKITWKAVTTSRLDTAALRKAMPDVAAAFTTQSTTRRFIVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHE9</accession>
    <name>R6YHE9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">FAD_syn domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00163</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30814">
        <property type="protein sequence ID" value="CDD30814"/>
        <property type="gene ID" value="BN815_00163"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_syn" evidence="5">
        <location>
            <begin position="14"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF06574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="12161" checksum="EDE95CA874A3F400" modified="2013-07-24" version="1">MRIIHQVGELLAQQRPAPCSLALGAFDGLHRGHMAVDLPFPAKPAARTCVSVLHKRGPSRRSRARLAPREHPQFFASFFQERREKAPFVRKVRSLPAPFGGLGKEESLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHG1</accession>
    <name>R6YHG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30829">
        <property type="protein sequence ID" value="CDD30829"/>
        <property type="gene ID" value="BN815_02016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="8246" checksum="5FBB137C8013DA0A" modified="2013-07-24" version="1">MVGHSQSMDTFGIYGHALQGEDAVTAGKLGALFESLAAPAQEQGEGEAYKKTCQEQHLTGRKNKKSGPKRPQKTESV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI05</accession>
    <name>R6YI05_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NTP_transf_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02173</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31019">
        <property type="protein sequence ID" value="CDD31019"/>
        <property type="gene ID" value="BN815_02173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002934">
        <property type="entry name" value="Polymerase_NTP_transf_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01909">
        <property type="entry name" value="NTP_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NTP_transf_2" evidence="1">
        <location>
            <begin position="9"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="30263" checksum="921B9F10BD19A9AD" modified="2013-07-24" version="1">MYQHHLDSIEKMKEYFRPTEGIIALVLGGSVAKGNERPDSDLDALVILTPEAYAKKLAEGRTAECVFGHCTYEGGYFDVKYMTKDYIQAAAQHGSEPTRNSFVGARVLFSSDPEVAEILPKIGVFPLWEREDKMLSFYGNYRLNSGYFLKGCKAEGYLRLLSVGQVVYSVYRMILQENEMLFPCNRRLEETVEAAPRKPEGIVELGRRAVATQRDEDVDAFSQAYFGWTTWHFPEDYSLPQARYTQDFEQWWYRPRPLVNEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YII5</accession>
    <name>R6YII5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase T</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02358</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31214">
        <property type="protein sequence ID" value="CDD31214"/>
        <property type="gene ID" value="BN815_02358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045148">
        <property type="term" value="F:tripeptide aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006518">
        <property type="term" value="P:peptide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010161">
        <property type="entry name" value="Peptidase_M20B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42994:SF1">
        <property type="entry name" value="PTHR42994:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037215">
        <property type="entry name" value="Peptidase_M20B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01882">
        <property type="entry name" value="peptidase-T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="M20_dimer" evidence="3">
        <location>
            <begin position="204"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="78"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR037215-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR037215-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="402" mass="43057" checksum="1AE927F05D05ED1D" modified="2013-07-24" version="1">MSVKDVFLDLVSYPTASDETTGTTPSTPGQKVLGAHIVEHMKSIGIADARMDEMGYVYGTIPATAERGTTVGFIAHMDTYGGVSGENIHPQVIENYDGGAIALGGSGLSLSPAAEPALLGHVGKTLITTDGTTLLGGDDKAGVAEILVAAEEILRENKPHGTVKIGFTPDEEIGEGADHFDVEGFGCDYAYTVDGGQLGGLDYETFNAASAVVEVEGVSTHTGGAKGKMVNSMGVAMEFCALLPKGQVPELTEGREGFIHLDAIHGNVEHTVMQFLIRDHDKELFRQKKELMEKAAAYINAKYPTQPLALTLKDSYYNMREMIEPRMEIVENMERAMKENGVEPHSEPVRGGTDGARLSFMGLPCPNICTGGANAHGKTEYVVLEDMEKIKDIIKTAIYNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIP6</accession>
    <name>R6YIP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00222</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31284">
        <property type="protein sequence ID" value="CDD31284"/>
        <property type="gene ID" value="BN815_00222"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028932">
        <property type="entry name" value="TerB-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025266">
        <property type="entry name" value="TerB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038056">
        <property type="entry name" value="YjbR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15615">
        <property type="entry name" value="TerB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13208">
        <property type="entry name" value="TerB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142906">
        <property type="entry name" value="SSF142906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TerB_N" evidence="2">
        <location>
            <begin position="146"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="TerB_C" evidence="3">
        <location>
            <begin position="472"/>
            <end position="607"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="503"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="503"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="520"/>
            <end position="537"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF15615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="616" mass="69737" checksum="AC263CE8E678624D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJX4</accession>
    <name>R6YJX4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000445">
        <property type="protein sequence ID" value="CDD31719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31719">
        <property type="protein sequence ID" value="CDD31719"/>
        <property type="gene ID" value="BN815_00450"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="26394" checksum="77ECBBC909DBF10B" modified="2013-07-24" version="1">MIGDLGGPVSAAVLVVDYVPAHVDDHLVQGVAVGVHAHRGDAGVALGHLLRRFGNALKGGGELRNASGVEHGLVVIDNRGGAVKGHGPHILVHGVEVHFLLQQITVVKAVLLNKVADRGDHAGVDHGLQVLLANLDDMGAAVPVGHVEKLAGGFIVGALVGGNHLILVLALVEPGYQGVQGLLGVAAHRVPELNLHLAAVGRGTPRLRAAAGSAACKRRDQCHGAYSKGSNSFSKVFHTLHSPIVSFFIATRQKGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKK5</accession>
    <name>R6YKK5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29071">
        <property type="protein sequence ID" value="CDD29071"/>
        <property type="gene ID" value="BN815_01047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16613" checksum="B67D4DA52A4C68F2" modified="2013-07-24" version="1">MKEKLKKLPPPLRKQALLRFAGAGACFCLLLLVAVGYRQPMLWFPFLVMGVFSAGSGALLMWRVDQGKVLVLEGVCWEVELTLFRRRPKAVVMECADRQVKVYLHARVRNLAVGERLRFYVAESAPVYEEDDILVLSGYLAVEVGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKT5</accession>
    <name>R6YKT5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">3-dehydroquinate synthase</fullName>
            <shortName evidence="8">DHQS</shortName>
            <ecNumber evidence="8">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroB</name>
        <name evidence="10" type="ORF">BN815_01084</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000131">
        <property type="protein sequence ID" value="CDD29196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29196">
        <property type="protein sequence ID" value="CDD29196"/>
        <property type="gene ID" value="BN815_01084"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01357">
        <property type="entry name" value="aroB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0170">Cobalt</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0520">NAD</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DHQ_synthase" evidence="9">
        <location>
            <begin position="67"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="105"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="129"/>
            <end position="130"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="169"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="347" mass="37361" checksum="F48A9216FE5C5451" modified="2013-07-24" version="1">MKLTIQTARPYSVILENGLLDRVGEMALQTRKPGSQAMLISETNVYPLYGERVKASLEKAGFAVSTFVFPAGEASKQLSTVLEMYSALARQGFTRTDFIVTLGGGVTGDMGGFAAATFLRGMPFLQVPTTLLSQVDASVGGKTGVDLPVGKNLVGAFHQPEAVLTDPETLATLPERFFRDGMGEVIKYGCISDKPLLEALEAGTALEDLEQLLARCVASKKSFVEEDTRDTGRRMILNFGHTFGHALEKLHNFQDLSHGEAVGIGMVLACQVGERLGVTPAGTGARVAAVLERYGLPTQDCFSWEEIVEATALDKKSDGSTLRLILLTQLGEAAIYPVTRDRLKTLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMI0</accession>
    <name>R6YMI0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29826">
        <property type="protein sequence ID" value="CDD29826"/>
        <property type="gene ID" value="BN815_01274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="34"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="231" mass="24659" checksum="09F0FE6099F9AA07" modified="2013-07-24" version="1">MIRKIIQIDEETCNGCGACAQACHEGAIGMVNGKAKLLRDDYCDGLGDCLPACPTGAITFVEREAAAYDEAAVLQNKAQKAQAAPFAGCPGHAGKTFQREAAPAAAAGKQESQLGQWPCQIKLVPVKAPYFQGAKLLIAADCTAYAYASFHQDFMRGKITLVGCPKLDSVDYSKKLTEILRENDIQSVTVVRMEVPCCGGLEQAAITALKNSGKFLPWQVVTLSTDGRILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP70</accession>
    <name>R6YP70_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4097 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01617</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30396">
        <property type="protein sequence ID" value="CDD30396"/>
        <property type="gene ID" value="BN815_01617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025164">
        <property type="entry name" value="DUF4097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13349">
        <property type="entry name" value="DUF4097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4097" evidence="2">
        <location>
            <begin position="178"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="47362" checksum="842AA75E19C5EB6E" modified="2013-07-24" version="1">MSEEKRRILDMVEQGTITQEDAARLLEALGENEPAPAQPQESQPPQDGTWEAEHQGDEDCQGPNQRVEIHLEGEGAKPIYQEITAALDDAAPVFENLGKIVEDAVTSATQAVDAAWPQVKEAVSSATDKAKGAAQSAAQAARESVLVGAVVPGKAALTPLPLEENAYQAPAGGPVTRLRVEWVNGPVEIRPWEGDTIRVAEYAARPLKDSERMELQENGGKLRIRWSRDKAFRSRMFLQKHLVVELPQDAALEELRVDTVSGGAYLSGFQAEECRVSTVSGAARCQGLRAQRLRVEAVSGAASLENVAAEELRCTTTSGKLELCGFAAQRLRAETVSGALTAGGNGEELSLSTVSGQLSLQVGQHPRQVKLNTVSGRIYVGLPEGEPGFTVEYSSMSGAFSSQFPLSGELGKRKGRAVYGSGGASLRLDTVSGAMELHVAPPQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPY4</accession>
    <name>R6YPY4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphopantetheine adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dephospho-CoA pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pantetheine-phosphate adenylyltransferase</fullName>
            <shortName evidence="6">PPAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">coaD</name>
        <name evidence="8" type="ORF">BN815_01858</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>(R)-4'-phosphopantetheine + ATP + H(+) = 3'-dephospho-CoA + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:19801"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="2.7.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 4/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the bacterial CoaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.3" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30651">
        <property type="protein sequence ID" value="CDD30651"/>
        <property type="gene ID" value="BN815_01858"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004595">
        <property type="term" value="F:pantetheine-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02163">
        <property type="entry name" value="PPAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00151">
        <property type="entry name" value="PPAT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001980">
        <property type="entry name" value="PPAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21342:SF1">
        <property type="entry name" value="PTHR21342:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01020">
        <property type="entry name" value="LPSBIOSNTHSS"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01510">
        <property type="entry name" value="coaD_prev_kdtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="9"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="90"/>
            <end position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="125"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="17944" checksum="691E80909213381B" modified="2013-07-24" version="1">MKLAVYPGSFDPVTLGHLDIIVRASKIFDKLIVGVPINPDKHASFSVEERMELLRRATQAEGLANVEIDKVDGLLADYAKRRGAMVVVKGLRALSDFEYEFQQALTNKKLNPELETMFLATSAENMFLSSSMVKQVAGFGGDISPFVPACILETIRERLCNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ89</accession>
    <name>R6YQ89_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine biosynthesis protein ThiF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30766">
        <property type="protein sequence ID" value="CDD30766"/>
        <property type="gene ID" value="BN815_01970"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012729">
        <property type="entry name" value="ThiF_fam2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43267">
        <property type="entry name" value="PTHR43267"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02354">
        <property type="entry name" value="thiF_fam2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiF" evidence="1">
        <location>
            <begin position="22"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="217" mass="23055" checksum="E0668C598BDC2A7A" modified="2013-07-24" version="1">MWAAAEPLPTREQLDAALRGRIGPALWRRFQGAKVAVCGLGGLGSHIAVALARAGVGALSLIDFDKVDLSNLNRQQYKASQIGREKPLALAENLREINPYLGLECHTLRLTPENIPAVLQGADVICEAFDKAEEKAMLVNTVLERLPQAIVVAASGMAGLGPGNAIRTEKVGKRLYLCGDGQSDVEEAGSLFAPRVMLCAAHQALAVLRVLAGELDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQY8</accession>
    <name>R6YQY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GTP-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02130</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30971">
        <property type="protein sequence ID" value="CDD30971"/>
        <property type="gene ID" value="BN815_02130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03711">
        <property type="entry name" value="Tet_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010298">
        <property type="entry name" value="DUF901"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035650">
        <property type="entry name" value="Tet_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005517">
        <property type="entry name" value="Transl_elong_EFG/EF2_IV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03764">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05991">
        <property type="entry name" value="NYN_YacP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00889">
        <property type="entry name" value="EFG_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="5">
        <location>
            <begin position="1"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="869" mass="95292" checksum="A817E06177610850" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRA9</accession>
    <name>R6YRA9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31096">
        <property type="protein sequence ID" value="CDD31096"/>
        <property type="gene ID" value="BN815_02249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="359"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="393"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="464" mass="50668" checksum="060AB6A4081EF111" modified="2013-07-24" version="1">MAVFTKDRSFYRSLVTLAVPISLQNLVTFAVSFADNVMIGSLGDDAISGVYIGGQLQSVLQMFVGGIEGAILILAAQYWGKKDTQSIRKVVSIGIKFALAVGLLSSLVAVLFPQWVIRAFTTEPGVIQEGAAYVQIVGFTYLFFSVSQVMIAAMRSVETARIGLYISCMALVINVCLNYVFIFGHFGFPAMGVRGAALATLVSRILEMCVGVGYVFFVDKKLRFGLKDLLHTDRQLLRDFIRYGLPVIGGQVVWAINSLANTKILGYYSAGVIAAASITGMLHNLVYVWMNGMSSAVGIITGKTVGAGQYEKMKEYSKTVQMIFLFVGLISGAAVFLARDGFISLYNASPEAQAYSRQFINVISVTIIGTCYQAACLFGLVKSGGDISFVFKNDTIFVFLVVIPSSLLAMWLGAPPWVVFACLKCDQILKCFVAIVKINRYNWMKNLTRDNTSQEEKERAVHGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRX6</accession>
    <name>R6YRX6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00266</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31331">
        <property type="protein sequence ID" value="CDD31331"/>
        <property type="gene ID" value="BN815_00266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="12"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="345" mass="40001" checksum="ED2E3E26026ED9F8" modified="2013-07-24" version="1">MFTSIMVCLDMFGCPNRCKHCWIGHSPNGNLTNDDLRFVAEKFRPFTNSLTVYDWYREPDYKDGYKERWNLCQSLSNTHEQHFELISVWRIVRDKEYAKWLSSLGLKKAQLTLFGGPEKTDSYTGRKNAYSEIVQAIEILLENEISPRIQVFVNKDTIDELPCIESLLQSLHLEERCKSFGGEFSFFLHQGSCDGENEKLYDIRVTPEDLEKIPQKLVEYTLKHFNETKIENVFGKTEQALYEELIHDHSTASYVSETPVFYIDKDFSVYPNITAPAPAWFLGNLKTEGIETILKNYTESKSVAQAMRLTVPLCDIVASQGDCQSQRLFDKGDYIDYLTNKYCRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSJ5</accession>
    <name>R6YSJ5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplE</name>
        <name evidence="9" type="ORF">BN815_00377</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31501">
        <property type="protein sequence ID" value="CDD31501"/>
        <property type="gene ID" value="BN815_00377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01333_B">
        <property type="entry name" value="Ribosomal_L5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002132">
        <property type="entry name" value="Ribosomal_L5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020930">
        <property type="entry name" value="Ribosomal_L5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031309">
        <property type="entry name" value="Ribosomal_L5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020929">
        <property type="entry name" value="Ribosomal_L5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022803">
        <property type="entry name" value="Ribosomal_L5_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031310">
        <property type="entry name" value="Ribosomal_L5_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11994">
        <property type="entry name" value="PTHR11994"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00281">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00673">
        <property type="entry name" value="Ribosomal_L5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002161">
        <property type="entry name" value="Ribosomal_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55282">
        <property type="entry name" value="SSF55282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00358">
        <property type="entry name" value="RIBOSOMAL_L5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L5" evidence="7">
        <location>
            <begin position="24"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L5_C" evidence="8">
        <location>
            <begin position="84"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029522"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="20138" checksum="83ADA7E0AAB8E103" modified="2013-07-24" version="1">MARMKDFYKAEVAPALMKKFGYKSVMQIPKLDKIVINVGAGEAKENAKAIDSISGDLAKITGQKPVVCKAKKSVANFKLREGMPIGVKVTLRGERMYEFLDRLFNVALPRVRDFRGINPNSFDGRGNYNMGIREQLIFPEIDYDKVDKVRGMDICFVTTANTDEEAREFLTLMGAPFTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YST9</accession>
    <name>R6YST9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">50S ribosomal protein L11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplK</name>
        <name evidence="11" type="ORF">BN815_00433</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 8">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="PTM">
        <text evidence="6 8">One or more lysine residues are methylated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uL11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31651">
        <property type="protein sequence ID" value="CDD31651"/>
        <property type="gene ID" value="BN815_00433"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00349">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00736">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000911">
        <property type="entry name" value="Ribosomal_L11/L12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036796">
        <property type="entry name" value="Ribosomal_L11/L12_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006519">
        <property type="entry name" value="Ribosomal_L11_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020783">
        <property type="entry name" value="Ribosomal_L11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036769">
        <property type="entry name" value="Ribosomal_L11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020785">
        <property type="entry name" value="Ribosomal_L11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020784">
        <property type="entry name" value="Ribosomal_L11_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11661">
        <property type="entry name" value="PTHR11661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00298">
        <property type="entry name" value="Ribosomal_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03946">
        <property type="entry name" value="Ribosomal_L11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00649">
        <property type="entry name" value="RL11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46906">
        <property type="entry name" value="SSF46906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54747">
        <property type="entry name" value="SSF54747"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01632">
        <property type="entry name" value="L11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00359">
        <property type="entry name" value="RIBOSOMAL_L11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0488">Methylation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L11_N" evidence="10">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L11" evidence="9">
        <location>
            <begin position="71"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15063" checksum="D598905A40419131" modified="2013-07-24" version="1">MAQKVTGFIKLQIPAGKATPAPPVGPALGQHGVNIMAFTKEFNERTKNDVGLIIPVVITVYADRSFTFITKTPPAAVLIKKACGIETASGEPNKKKVAKITREQVQKIAEQKMPDLNASSVESAMRMIAGTARSMGIEVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9T7</accession>
    <name>R6Z9T7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Polysaccharide biosynthesis protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00552</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27242">
        <property type="protein sequence ID" value="CDD27242"/>
        <property type="gene ID" value="BN815_00552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024923">
        <property type="entry name" value="PG_synth_SpoVB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029303">
        <property type="entry name" value="Polysacc_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002797">
        <property type="entry name" value="Polysacc_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01943">
        <property type="entry name" value="Polysacc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14667">
        <property type="entry name" value="Polysacc_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038958">
        <property type="entry name" value="PG_synth_SpoVB"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="208"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="267"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="377"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="413"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="446"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="471"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="509"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="542"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="domain" description="Polysacc_synt_C" evidence="7">
        <location>
            <begin position="418"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="590" mass="62160" checksum="45D8B632B9C515B7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAZ1</accession>
    <name>R6ZAZ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Galactoside O-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00682</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27637">
        <property type="protein sequence ID" value="CDD27637"/>
        <property type="gene ID" value="BN815_00682"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024688">
        <property type="entry name" value="Mac_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12464">
        <property type="entry name" value="Mac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01266">
        <property type="entry name" value="Mac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Mac" evidence="2">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="219" mass="24079" checksum="F849DE3CE934E303" modified="2013-07-24" version="1">MVKEEERIFQGIVFCPGDPELVALKLRTHNLNVDYNNTYEDEYEKRAAILGEILGEMGESTRIQGPIAFHYGKHTKIGRNFFGNFNLTIQDDGEVTIGDRCNFGPNVTIVTPIHPMVPEERNALLGPDGKPKRLCYAKPVHIGSDVWLGANVVVCPGVTIGDGCVIGAGAVVTRDIPPRTFAAGNPCRVIREITEQDSMAHKPEILADFTVPQSFEGLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCT5</accession>
    <name>R6ZCT5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00812</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28312">
        <property type="protein sequence ID" value="CDD28312"/>
        <property type="gene ID" value="BN815_00812"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032531">
        <property type="entry name" value="DUF4956"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16316">
        <property type="entry name" value="DUF4956"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="24273" checksum="6E833F1D38440F76" modified="2013-07-24" version="1">MTFRDIFKSSFLENMDSVPLLDMAIALVLSFLLGLFIFAIYKQCYAGVMYSPSFGVTLVALSLITTLLILTVVSNIVLSLGMVGALSIVRFRTAVKEPMDIAFLFWAIAVGIVLAAGLLVLAVGGSLFIGVVLLAFSKRKGPETPYILLLHCQGEQAEQLARAFVASQVKRLSLKSKAVESGLVELNYEVRLKEGDASFVNELERMEGVSRVTLVSYNGDYMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEW4</accession>
    <name>R6ZEW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29017">
        <property type="protein sequence ID" value="CDD29017"/>
        <property type="gene ID" value="BN815_01028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="17888" checksum="3782F61E25BF4AE7" modified="2013-07-24" version="1">MEEYKRRLKRQNVLLWVGIILLAALDVLLGIFWDNLGFLDTRLMTERARHMQSMLLFGFLVYFVVKLVGNKRRLKNLWQYEEEARWQKDERRILIGEKAAKLAADLALAGLVVATFVVSLYNMDAFNALYYTLLGFVLLRFGCWLYVRRKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG23</accession>
    <name>R6ZG23_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01145</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29412">
        <property type="protein sequence ID" value="CDD29412"/>
        <property type="gene ID" value="BN815_01145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022208">
        <property type="entry name" value="DUF3737"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12541">
        <property type="entry name" value="DUF3737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="31842" checksum="1713EE0BE2B2381C" modified="2013-07-24" version="1">MNTIANKTLDQERALYGLRDTLVKDCIFDGPADGESAFKECADVEADHCFFNLRYPFWHDEHLTIRNSEMTELCRAALWYSHHITIADTKLHGIKALRECSDVKMTGCDIVSPEFGWSVHNIEMEDCDAQAEYFMMRSTGLRFTNVRMKGKYSFQYIEDAVFEDCDFDTKDAFWHAKNVVVKNSTVKGEYLAWYCENVTFENCTIIGTQPLCYCQGLKLINCKMVECDLAFERSHVQASLTAPILSIKNPLTGSRITVPQVGEIIRDIPGADGEILVENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHY2</accession>
    <name>R6ZHY2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01356</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000191">
        <property type="protein sequence ID" value="CDD30052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30052">
        <property type="protein sequence ID" value="CDD30052"/>
        <property type="gene ID" value="BN815_01356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="10001" checksum="42841A95B8752D6D" modified="2013-07-24" version="1">MIIKSSTALRNDYGTISDLAHKEAEPIYITKNGEGDLVVMSIEAFEQREETLKLRAKLEVAEQARLSGAPTYTLEESRKRLEEIYQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI82</accession>
    <name>R6ZI82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30157">
        <property type="protein sequence ID" value="CDD30157"/>
        <property type="gene ID" value="BN815_01402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="6685" checksum="E8F7887681B905B6" modified="2013-07-24" version="1">MSKGSFMAARNRTMLKAPTMPKDSTTLEVTAKITRVVIMVRPTSVTPKLEEYITPAKVFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIA5</accession>
    <name>R6ZIA5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PF09148 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000202">
        <property type="protein sequence ID" value="CDD30182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30182">
        <property type="protein sequence ID" value="CDD30182"/>
        <property type="gene ID" value="BN815_01425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015231">
        <property type="entry name" value="DUF1934"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09148">
        <property type="entry name" value="DUF1934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50814">
        <property type="entry name" value="SSF50814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16315" checksum="B6CD5B19F266B7BD" modified="2013-07-24" version="1">MLKDDYDINIIGRQAWEEDQGEITLNTTGAYTYRGGARFIAYKEYDTEDPKVSYTSVLKVEPGKVTMMRSGSSTRLILEKGRRHLCLYDTGYGTLTLGVFTSELSTSLGEAGGRIDIKYTLDIDSNLSSSNEITVEVKPRGQRAAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIR0</accession>
    <name>R6ZIR0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000222">
        <property type="protein sequence ID" value="CDD30342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30342">
        <property type="protein sequence ID" value="CDD30342"/>
        <property type="gene ID" value="BN815_01576"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18758" checksum="06D212CF974019D0" modified="2013-07-24" version="1">MKLRKATVADGPAVAALYREAQAFLAAQGIDQWQDGYPNEETFQEDVARGESWLLEDEGQVVATACLGLGREPTYDTIYQGAWGTEAPEYAFLHRIAVSGACKGKGAPSWFFQELERQARERGLPCLRGDTHRENKIMQRVMEKNGLSCRGVIYLEDGGERLAFEKLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIT7</accession>
    <name>R6ZIT7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00131</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30372">
        <property type="protein sequence ID" value="CDD30372"/>
        <property type="gene ID" value="BN815_00131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_14" evidence="1">
        <location>
            <begin position="18"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4143" evidence="2">
        <location>
            <begin position="225"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="431" mass="49481" checksum="270F270EC43371D8" modified="2013-07-24" version="1">MYRKIMSFLEAWKDSVHRKPLILQGARQVGKTYSILEFGRSHYENVAYFNFETNPKLNETFEENISPDYLIPILSHIAGQTIVKEKTLIVFDEVQLCERALTSLKYFCEDAPDYHIVALGSLLGVAVGRAKFSFPVGKVDMKTLYPMDMEEFMLALGEDTLVEQIKKCFETDTPMPSALHDAAMLLYRQYLVVGGMPECVLQFTQTKDYILVRHTQDTILASYLNDMSKYNNVNEIKKTRLAYDNITVQLSKKNTRFQYKLIKKGGRASEFENAIEWLCLSGIVSQVYKVEQIKKPLENYRDIDAFKIYVSDLGLLCAKKDLAANDVLYMVEELNDFKGGMAENYVNVQLTINGYKTYYWESERGAEIDFVIQRDGQLIPIEVKSADNTRAKSLKVYMETYQPAYAIKLSAKNFGFEDNKKTVPLYAAFCI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIU5</accession>
    <name>R6ZIU5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="7">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
            <shortName evidence="7">EPT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murA</name>
        <name evidence="9" type="ORF">BN815_01603</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30382">
        <property type="protein sequence ID" value="CDD30382"/>
        <property type="gene ID" value="BN815_01603"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00111">
        <property type="entry name" value="MurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01072">
        <property type="entry name" value="murA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="8">
        <location>
            <begin position="7"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate binding" evidence="7">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-N-acetylglucosamine binding" evidence="7">
        <location>
            <begin position="122"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="2-(S-cysteinyl)pyruvic acid O-phosphothioketal" evidence="7">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="429" mass="46196" checksum="83B204844B52913D" modified="2013-07-24" version="1">MEKYVIKGGCRLTGEVNISGAKNAAVAIIPATILADSPCRLENLPDISDVKTLTYILESMGAKVEYLDRHTVEIDPRTVDTDTVSADIARRIRASYYFLGALLGRCRKAVVPMPGGCNFGIRPIDQHLKGFAALGCDYSLDNGMISVSAPQDLHGASVYMDVVTVGATMNIMLAAVKARGLTVIENAAREPHIVDLANFLNTLGADIRGAGTDTIKIHGVQKLRGATYSIIPDQIEAGTYMVAAAATGGDVTVKNVTPKHLESISAKLVEMGVTVEEGDDTVRVYCQRPLRKCNVKTMPHPGFPTDMQPQITTLLSIAHGTSMVNESVWESNRFKYVDELRRMGAQITVDGKVAIVEGVDHLKGAPVRALDLRAGAAMVIAGLVAEGTTVLEDIQYIERGYENIVEKLVDLGADIYRSQEPEQVMGKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIV5</accession>
    <name>R6ZIV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">PF04239 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01613</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0702 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30392">
        <property type="protein sequence ID" value="CDD30392"/>
        <property type="gene ID" value="BN815_01613"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.240.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007353">
        <property type="entry name" value="DUF421"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023090">
        <property type="entry name" value="UPF0702_alpha/beta_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04239">
        <property type="entry name" value="DUF421"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="229" mass="25662" checksum="9782DF21B724AFD5" modified="2013-07-24" version="1">MAVILLRTVLMYGVILLAVRLMGKRQVSQLQNSELVVTLLLSELAVLPIQEEEKPLWVGLAPMAALVACELLVSVLMLKSGRFRQLVCGSPTVVIERGQVLQKAMRRLRLTTEDLFEQLRQKGVFYLEDVAWAIVETNGMLSVIRRPEEEPVTPKELGLSPASQGLEVVVISDGELSLRSLGLCGKDQAWVRRRLQERGLGQEQVFLMTVRTDGKWRVIEKNMDTAQGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ38</accession>
    <name>R6ZJ38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000254">
        <property type="protein sequence ID" value="CDD30472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30472">
        <property type="protein sequence ID" value="CDD30472"/>
        <property type="gene ID" value="BN815_01689"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="605" mass="62150" checksum="EE4E2ED56F04540E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJL0</accession>
    <name>R6ZJL0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">L-lactate dehydrogenase</fullName>
            <shortName evidence="6">L-LDH</shortName>
            <ecNumber evidence="4 6">1.1.1.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ldh</name>
        <name evidence="12" type="ORF">BN815_01844</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the conversion of lactate to pyruvate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>(S)-lactate + NAD(+) = H(+) + NADH + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23444"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16651"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.27"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Allosterically activated by fructose 1,6-bisphosphate (FBP).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Fermentation; pyruvate fermentation to lactate; (S)-lactate from pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the LDH/MDH superfamily. LDH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.27" evidence="4 6"/>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30637">
        <property type="protein sequence ID" value="CDD30637"/>
        <property type="gene ID" value="BN815_01844"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00554">
        <property type="reaction ID" value="UER00611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004459">
        <property type="term" value="F:L-lactate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00488">
        <property type="entry name" value="Lactate_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001557">
        <property type="entry name" value="L-lactate/malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011304">
        <property type="entry name" value="L-lactate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018177">
        <property type="entry name" value="L-lactate_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022383">
        <property type="entry name" value="Lactate/malate_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001236">
        <property type="entry name" value="Lactate/malate_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02866">
        <property type="entry name" value="Ldh_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00056">
        <property type="entry name" value="Ldh_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000102">
        <property type="entry name" value="Lac_mal_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00086">
        <property type="entry name" value="LLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="SSF56327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01771">
        <property type="entry name" value="L-LDH-NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00064">
        <property type="entry name" value="L_LDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ldh_1_N" evidence="10">
        <location>
            <begin position="7"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="Ldh_1_C" evidence="11">
        <location>
            <begin position="148"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="123"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="151"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6 7">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="82"/>
            <end position="83"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="121"/>
            <end position="123"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>allosteric activator</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>beta-D-fructose 1,6-bisphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <note>allosteric activator</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004843"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000102-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="316" mass="34594" checksum="C0AA0C7655133DDE" modified="2013-07-24" version="1">MILNKRKIVLVGTGMVGMSFAYSALNQAVCDELVLVDIDRHRAEGEAMDLNHGVAFAPSSMKIYAGDYSDCADADIVVICAGVSQKPGESRLDLLKRNTAVFQSIIGPITHSGFSGIFLVATNPVDIMTRVTYELSGFNSNRVFGTGTTLDTARLRYLLGDYFTVDPRNVHAYVIGEHGDSEFVPWSQAMVATKSVADICEQSQGKFCLEEMQTISVEVRDAAQKIIEAKRATYYGIGMALVRIVRAVLSNENSVLTVSARLRGEYGQRDVFAGVPCIVNRNGVDRVLELSLTEEERQKLADSCAILQESYQGLEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJL9</accession>
    <name>R6ZJL9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13 15">tRNA (guanine-N(1)-)-methyltransferase</fullName>
            <ecNumber evidence="6 13 15">2.1.1.228</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">M1G-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA [GM37] methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">trmD</name>
        <name evidence="17" type="ORF">BN815_01854</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13 15">Specifically methylates guanosine-37 in various tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 15">
            <text>guanosine(37) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methylguanosine(37) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:36899"/>
            <dbReference type="Rhea" id="RHEA-COMP:10145"/>
            <dbReference type="Rhea" id="RHEA-COMP:10147"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="EC" id="2.1.1.228"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13 15">Belongs to the RNA methyltransferase TrmD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.228" evidence="6 13 15"/>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30647">
        <property type="protein sequence ID" value="CDD30647"/>
        <property type="gene ID" value="BN815_01854"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052906">
        <property type="term" value="F:tRNA (guanine(37)-N(1))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18080">
        <property type="entry name" value="TrmD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00605">
        <property type="entry name" value="TrmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002649">
        <property type="entry name" value="tRNA_m1G_MeTrfase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023148">
        <property type="entry name" value="tRNA_m1G_MeTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016009">
        <property type="entry name" value="tRNA_MeTrfase_TRMD/TRM10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46417">
        <property type="entry name" value="PTHR46417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01746">
        <property type="entry name" value="tRNA_m1G_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000386">
        <property type="entry name" value="tRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00088">
        <property type="entry name" value="trmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13 15" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 13 14" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="10 13 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 13 15" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA_m1G_MT" evidence="16">
        <location>
            <begin position="23"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13 14">
        <location>
            <begin position="133"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27546" checksum="F684A6D9EF272FC2" modified="2013-07-24" version="1">MRVDILTLFPEMFPPVLGHSIIGRARKKGLLQVCCHQLRDFSPDPRGRVDDTVFGGGKGMLLAAEPFARGIDQLRAHLGWQPHILYMSPRGKVLTQEDAKRLAQEPGLVLLCGHYEGVDQRLLDEYQVEEISIGDYVLTGGELPAMILTDAVARMLPGVLSEEACFTEESHYAGLLESPQYTRPEVWRGRPVPPVLLSGHHGNIQQWRRAQSLAVTRRNRPDLWAQAELSKEDKKLLEKLDKTPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKQ4</accession>
    <name>R6ZKQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02166</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000358">
        <property type="protein sequence ID" value="CDD31012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31012">
        <property type="protein sequence ID" value="CDD31012"/>
        <property type="gene ID" value="BN815_02166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023204">
        <property type="entry name" value="SP1917_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014580">
        <property type="entry name" value="UCP033199"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09966">
        <property type="entry name" value="DUF2200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033199">
        <property type="entry name" value="UCP033199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13014" checksum="4F26BB9548F5584F" modified="2013-07-24" version="1">MSNEKVFQMKLQKVYPLLVAKAEKKGRSRGEVDAAACWLTGYSQEQLAALLESDIAYGDFFRQAPAPHPNRGLITGSVCGVKVEAIQDPLLREIRYLDKLVDELAKGKPLEKVLRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKQ8</accession>
    <name>R6ZKQ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Paral putative regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02171</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tRNA methyltransferase O family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31017">
        <property type="protein sequence ID" value="CDD31017"/>
        <property type="gene ID" value="BN815_02171"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd09281">
        <property type="entry name" value="UPF0066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023370">
        <property type="entry name" value="TrmO-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041369">
        <property type="entry name" value="TrmO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023368">
        <property type="entry name" value="UPF0066_cons_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040372">
        <property type="entry name" value="YaeB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036413">
        <property type="entry name" value="YaeB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036414">
        <property type="entry name" value="YaeB_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818">
        <property type="entry name" value="PTHR12818"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01980">
        <property type="entry name" value="TrmO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18389">
        <property type="entry name" value="TrmO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118196">
        <property type="entry name" value="SSF118196"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00104">
        <property type="entry name" value="tRNA_TsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01318">
        <property type="entry name" value="TSAA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51668">
        <property type="entry name" value="TSAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="TsaA-like" evidence="3">
        <location>
            <begin position="7"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="25411" checksum="D5874C505BA35400" modified="2013-07-24" version="1">MSENLTLRPIGRIRTEFPEKFGIPRQSGLVEELRAVVEFEREFRAPEAFRGLEGFSHLWLLWHFTQSQGWSPTVRPPRLGGNQRVGVFATRAPFRPNPIGLSCVKLEKVDYTAPGGPVLLVRGADLLDGTPIFDVKPYVPLADCRPQAVGGFSDQHREDGLSVDFPPALLEQVPEEKRAALLGVLAQDPRPSYQHDPQRVYGMAFAGLEVRFTVEGNILTVRGIEAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL07</accession>
    <name>R6ZL07_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Radical SAM-linked protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31132">
        <property type="protein sequence ID" value="CDD31132"/>
        <property type="gene ID" value="BN815_02276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018768">
        <property type="entry name" value="DUF2344"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10105">
        <property type="entry name" value="DUF2344"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03936">
        <property type="entry name" value="sam_1_link_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2344" evidence="1">
        <location>
            <begin position="4"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="24575" checksum="9D5A52B4F1D8D42C" modified="2013-07-24" version="1">MKNVRIWFEKKGAARYISHLDLTRNMARGLKLSGLPVWYTEGFNPRIYMTYAMPLSLGVCGERECMDIRLTEDVPLEDIAPRLNAHLPAGLQALEATEPVDKFEDIQYGEYQLFLEGDPAVLEEQLHTLFQREEVLVLKHTKKGDKEFDIKPDFQNAQLHPQEDGMLLELRLPCSVNGSTNPALLQEALKRHLGLEPYGAITRKCLLLQDFSPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL12</accession>
    <name>R6ZL12_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ribonuclease HII</fullName>
            <shortName evidence="11">RNase HII</shortName>
            <ecNumber evidence="11">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rnhB</name>
        <name evidence="14" type="ORF">BN815_02281</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 11 12">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11 12">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 11 12">Belongs to the RNase HII family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="11"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31137">
        <property type="protein sequence ID" value="CDD31137"/>
        <property type="gene ID" value="BN815_02281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07182">
        <property type="entry name" value="RNase_HII_bacteria_HII_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00052_B">
        <property type="entry name" value="RNase_HII_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022898">
        <property type="entry name" value="RNase_HII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001352">
        <property type="entry name" value="RNase_HII/HIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024567">
        <property type="entry name" value="RNase_HII/HIII_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954">
        <property type="entry name" value="PTHR10954"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954:SF18">
        <property type="entry name" value="PTHR10954:SF18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01351">
        <property type="entry name" value="RNase_HII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 11 12" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="9 11 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="7 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 11 12" id="KW-0540">Nuclease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase_HII" evidence="13">
        <location>
            <begin position="31"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="213" mass="23447" checksum="9FF1D998D572CCDB" modified="2013-07-24" version="1">MARTAKQPIPQDHDWYAWERRAQEAGYGLVCGIDEAGRGPLAGPVCAAAVILPLDCQIPGLNDSKKLTEKKREALFPLIQEKALAYGIGWASAQEIDEINILQATFLAMKRAVEQLPLQPGWALVDGNRMPPLEIPGETVVKGDAQCASIAAASILAKVSRDRLLEEWDQLYPQYGFAKHKGYGTKAHYEAIQAHGILPIHRRSFLKNLGEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL75</accession>
    <name>R6ZL75_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31202">
        <property type="protein sequence ID" value="CDD31202"/>
        <property type="gene ID" value="BN815_02346"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427105" evidence="1">
        <location>
            <begin position="26"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="14669" checksum="4BA83C992C950339" modified="2013-07-24" version="1">MKQKLGALCLAAALLVLSGCGGSSLSIESRQWELSTVLDGETGAVVACGPSWQEAYPDAAVVSLSCQAQGGRLTLQGQKETYTGTYQQAERSQKGTVYQVTVEGSAGQAVCSTTDHRTGEQAPTLVLSLPEAYTLYFTGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLK4</accession>
    <name>R6ZLK4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sigma-24 (FecI)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00267</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31332">
        <property type="protein sequence ID" value="CDD31332"/>
        <property type="gene ID" value="BN815_00267"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="26"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="119"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="180" mass="20900" checksum="7FBBDCA005776CF0" modified="2013-07-24" version="1">MKKEIDRKLLAALRAREPQGLEEAIGRYSPYVAGVLRKVLGQLGTQEDLEELSSDVFVALWQSAEGLREDSDLKLWLGVVARNRALKHLRALRLELPLEDAFLPGPEPTRFWERQEETQLVRQALLRLSPTDRDIFLRHYYWRQTVARIAEELGMNPSTVKSRLKRGREKLRNTLKKEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLV8</accession>
    <name>R6ZLV8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000421">
        <property type="protein sequence ID" value="CDD31432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31432">
        <property type="protein sequence ID" value="CDD31432"/>
        <property type="gene ID" value="BN815_00343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="15"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12690" checksum="507AA541E5D9F955" modified="2013-07-24" version="1">MKETCSFAKEMGKRVAQRRKELGLTQEKAAERCGLSQQFFASIETGGKNVRGESLLKLAMGLDISADYLLTGRVTDLELDQLLQRLRQLPGEEYRHMLTVIKEYLWALGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUA7</accession>
    <name>R6XUA7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00588</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27318">
        <property type="protein sequence ID" value="CDD27318"/>
        <property type="gene ID" value="BN815_00588"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025269">
        <property type="entry name" value="SAM-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13102">
        <property type="entry name" value="Phage_int_SAM_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="6">
        <location>
            <begin position="72"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="5">
        <location>
            <begin position="177"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="385"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="396"/>
            <end position="410"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="410" mass="46983" checksum="A28FD3D17953E884" modified="2013-07-24" version="1">MKYTAVSVRQLNRKGRPWQARAKYKDVFGKWKEVSKMLPDAKGKRDAQRMANEWLDALNAQADLMPNAGKISTVDETFKEYLKHQLDTGEIEKSTYSNSLHSYNRYIKPYLGNYMFASVDNTVINGWLTNLYQLGLSQNTIHTTYARLKKIYNYFYNNGELLKDPFKGVKMPKKGDTKVTHLTNEQMDNVLEAVYLDYEPQDPMYVGILLAFYAGLRRGEICGLRWNDIDFYKHTIRVRSAVGVSNIQGTSDYTKNPKNKSSSRTFPMLPQLEQALKERKALLNPDDNWFIIGEGEKFMHPQQYNRLFSEFVERNHLVDAYGKKIVPHGLRHNFATVGIRAGMDIASLALMMGHASRAMTLDTYGDANADALTLASVKLEDTFNKNTSFGEEQTQMPEEAEQREQNKGES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYJ8</accession>
    <name>R6XYJ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">YitT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00980</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28838">
        <property type="protein sequence ID" value="CDD28838"/>
        <property type="gene ID" value="BN815_00980"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019264">
        <property type="entry name" value="DUF2179"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10035">
        <property type="entry name" value="DUF2179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006483">
        <property type="entry name" value="Membrane_protein_YitT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2179" evidence="8">
        <location>
            <begin position="230"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF10035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="32354" checksum="C8EC1D43FF40D782" modified="2013-07-24" version="1">MGNTTGSRKKKAIRGAWKLGMVLAGNTLYALGVTLFLLPSGLITGGTTGLGLVAEHFFHVPLSTFVAVFNILMFLVGLLVLGKVFALTTAISSFYYPAILAVFQSLFGEVRLTEDPLLATVLAGLMIGASIGVVIRAGASTGGMDIPPLVLQKKLRIPVSVSLYVFDCLILLLQALFSNVEQVLYGLVMVLLYTLTLNKTLLLGTGQMQLKVVSKKYGEISQAIQRQVDRGTTLFQSMGGFEQEQGCTVLTVVDRRELPKLTELVTEIDPDAFMVVNQVNEVRGRGFTSPKRYEKRDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZ19</accession>
    <name>R6XZ19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SPFH/Band 7/PHB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01016</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28993">
        <property type="protein sequence ID" value="CDD28993"/>
        <property type="gene ID" value="BN815_01016"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="73"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="332" mass="36299" checksum="4225A7F21CC17F35" modified="2013-07-24" version="1">METQEKIVNRYVEKPVKTKNGFAMLALILLLFFGSIAAMVCGPVFLSATNVGVAVAIAIAGALVLIFDLFLMPGLKILNPNEALVLTLFGKYHGTLKKDGYFWVNPFCEGINPGAQGSSMTTNLNGSTTVSLGGNKKISLKTMTLNNEKQTVNDERGNPIIIGTIVIWRIVDTTKAVFNVQNYRTFLSTQCDSATRNIARMYPYDLLEEDSSNEKTLRGSSQEIADMMKQDLQERVAMAGLEILEVRITHLSYAPEIAAAMLQRQQAEAIVAARKKIVEGAVGMVEMALAQLNDDRIVDLDEERKAAMVSNLLVVLCGNKDAQPIVNSGSIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZR2</accession>
    <name>R6XZR2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000013">
        <property type="protein sequence ID" value="CDD27095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27095">
        <property type="protein sequence ID" value="CDD27095"/>
        <property type="gene ID" value="BN815_00020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13333">
        <property type="entry name" value="rve_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="36"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="204" mass="23330" checksum="928B9FBA7A49F994" modified="2013-07-24" version="1">MKAAGIHSQRKRAYKATTNSRHNCPIAPNLLQRQFTFSRPNQAWVGDITYIPTGEGWLHLAIVKDLCTKKIVGYAFSQRIDTQLTLDALNMAVRRERPAPGLIFHSDRGVQYAAAAFRERLASLGVRQSMSRKGDPYDNAVAENFFSCLKCELVHLRRFDSRRAAQADLFTYIEAFYNTIRPHSSLGWLPPRDFEKRLLDWEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y181</accession>
    <name>R6Y181_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27560">
        <property type="protein sequence ID" value="CDD27560"/>
        <property type="gene ID" value="BN815_00653"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8268" checksum="A69279BBD4A86687" modified="2013-07-24" version="1">MSFRSERYSISSTLALGKYKVALAAQHEADRIADLKALCQRKGLDFDTENRKYLDKQAKKQAKAAAKAARKHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y187</accession>
    <name>R6Y187_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29828">
        <property type="protein sequence ID" value="CDD29828"/>
        <property type="gene ID" value="BN815_01275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="89" mass="10362" checksum="98023ECF5D280662" modified="2013-07-24" version="1">MEHSLELQKFHYFDEGNTYAGQKTKDPDSGLLLRYLVEPDKEAALLRAYAWTEDLCFERAHDKLQKEVPLSEEGLEQALAWLEEQYASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1L9</accession>
    <name>R6Y1L9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Bacitracin ABC transporter ATP-binding protein BcrA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00703</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000058">
        <property type="protein sequence ID" value="CDD27710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27710">
        <property type="protein sequence ID" value="CDD27710"/>
        <property type="gene ID" value="BN815_00703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="209" mass="22931" checksum="F5B8087E90B94E5E" modified="2013-07-24" version="1">MISVKDLTLTLNNTIVLDHVSAEFAEGTVTGLVGRNGSGKTVLMKCICGFFKPDSGSVSVGGKIVGRDMDFPEDLGIIIEAPGFLGHFSGYENLKLLAMIRHRIGKKEIYDAMELVGLDPKSKKRVAKYSLGMKQKLGIAQAVMENPSMIILDEPMNSLDSSSVEDVRKLILQWKSQGKTIILSSHNQEDISMLCDKTYYMKDGKIIDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2F9</accession>
    <name>R6Y2F9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30243">
        <property type="protein sequence ID" value="CDD30243"/>
        <property type="gene ID" value="BN815_01486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="70"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="102" mass="12193" checksum="116E770220BC5F2B" modified="2013-07-24" version="1">MRLNLILRTILQEKERIDRMLAKYQEELGTLPKGTISEKKVKQSTYFYLKYREGKKVISRYIPQKDVEAVREQVEKRRHIETMIRSLQEERAIAEKALEGQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2M7</accession>
    <name>R6Y2M7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01542</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30308">
        <property type="protein sequence ID" value="CDD30308"/>
        <property type="gene ID" value="BN815_01542"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="9963" checksum="D7AD11175209513C" modified="2013-07-24" version="1">MEPWTVVTTLSVLAALAAAVGGPLVKLNGTIARLSAMLEHVLHRLDMLEGEDRNLRRKWEETQCQLGGRVSHCENRLSLLEQKGGAYESH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Z3</accession>
    <name>R6Y2Z3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00783</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28200">
        <property type="protein sequence ID" value="CDD28200"/>
        <property type="gene ID" value="BN815_00783"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="2"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="40"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7306" checksum="42CD47EE6B5AA279" modified="2013-07-24" version="1">MARIIVDEKVCKGCGMCVHACPLKIIALDKTRLNAKGYHPAQLVEPEKCVGCASCATMCPDTAITVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y420</accession>
    <name>R6Y420_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative colicin V production protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01923</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30718">
        <property type="protein sequence ID" value="CDD30718"/>
        <property type="gene ID" value="BN815_01923"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009403">
        <property type="term" value="P:toxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003825">
        <property type="entry name" value="Colicin-V_CvpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02674">
        <property type="entry name" value="Colicin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="136"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="24094" checksum="1162B18410A160AC" modified="2013-07-24" version="1">MGYTLDIVLVAVCVAFVAIGAHRGFIRSAAHFLGAVVAASLAGLLGGAAAQWVFDTLFRPGLVERIGESLASLGSGDTYTAVQGVFASLPDFILRALEQAGVTAASVTEALAGQSGQAADLIADALAPVFVGFLKVLAVIVLFCLFMIVVRIVANLLATVFHLPILRAVDGLLGGVFGLLLAVISIWIVLAAVQVFTPMLAADTQAQVETALRQSYLAGLVVNWNPLGIMFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4A7</accession>
    <name>R6Y4A7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative stage V sporulation protein T</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00152</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30803">
        <property type="protein sequence ID" value="CDD30803"/>
        <property type="gene ID" value="BN815_00152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01439">
        <property type="entry name" value="lp_hng_hel_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="2">
        <location>
            <begin position="5"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="19069" checksum="CA8C975D6964484D" modified="2013-07-24" version="1">MKATGIVRRIDDLGRVVIPKEIRRTLKIREGMPMEIFTDVSGEVILKKYSPVGEMSTLAQAYAGVLVSLTGQAAAVCDTEQIIAVAGPAKKEPLHKPLSPQLDELVQGKRPFTTPGQDTVPVAQGVAAEALAVFPLVAEGDPMGAVLLLKGERSPKQLDAGTLESLRAAAMFLSRQLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4H3</accession>
    <name>R6Y4H3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Ornithine carbamoyltransferase</fullName>
            <shortName evidence="5">OTCase</shortName>
            <ecNumber evidence="3 5">2.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02045</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>carbamoyl phosphate + L-ornithine = H(+) + L-citrulline + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19513"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.3" evidence="3 5"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30858">
        <property type="protein sequence ID" value="CDD30858"/>
        <property type="gene ID" value="BN815_02045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004585">
        <property type="term" value="F:ornithine carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01109">
        <property type="entry name" value="OTCase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002292">
        <property type="entry name" value="Orn/put_carbamltrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024904">
        <property type="entry name" value="OTCase_ArgI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00102">
        <property type="entry name" value="OTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00658">
        <property type="entry name" value="orni_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="OTCace_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="OTCace" evidence="7">
        <location>
            <begin position="148"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="51"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="129"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Ornithine binding" evidence="5">
        <location>
            <begin position="224"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carbamoyl phosphate binding" evidence="5">
        <location>
            <begin position="260"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="220"/>
        </location>
        <ligand>
            <name>L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>carbamoyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007805"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="33625" checksum="1CA672C867B5BC25" modified="2013-07-24" version="1">MKHLLKLLDLTGQEILDILNLADQLKYETKHGIPHPHLQGKCLGMIFEKSSTRTRVSFEVGINQLGGYAVVLGAEGSQIGRGEPVQDTARVLSRYVDGIMIRTFGQDEVEALAQYGSVPVINGLTDFCHPCQVLADLMTIREYKGSLEGLKLCFIGDGNNMMNSLIVGGLKVGMSVSVACPQGYRPPQEILEFAAGYGDKFELTDSPMQAAKDADVVITDVWTSMGQEEERQKREATFAGYCVDEQLMAQAKPDAMVQHCLPAHRGEEITEEVFEANAQYIFEEAENRLHAQKAVLVKTMGGLQGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4W9</accession>
    <name>R6Y4W9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00997</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28920">
        <property type="protein sequence ID" value="CDD28920"/>
        <property type="gene ID" value="BN815_00997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004560">
        <property type="term" value="F:alpha-L-fucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000933">
        <property type="entry name" value="Glyco_hydro_29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01120">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="34640" checksum="C5574BA782D72310" modified="2013-07-24" version="1">MDRQEMFQGKRWGLFNHFLCVPAGDGTGEPCSPEEWNARVDAFDVELLAAQLREVGADYFCITIGQNSGHYCSPNPVYDQLVGISPSKCSRRDLIADLAAALEPQGIDLWVYLPSGAPCADAQAVERLEWVDGQGQRLASFQRKWEAVIREWSLRWGERVKGWWIDGCYYPDAMYNFPDEPNFKSFAAAIRAGNPQAVVAFNRGLEDPFLPQCPWEDYTAGEVGDWLPIPGQKARERLQGKKLHVLSYLGQTWGQGQPRFPDELVAGYTKLILAQDGILTWDIPLEPNGAIPQAYRCQLQALGRMLEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y532</accession>
    <name>R6Y532_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD hydrolase family IA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01013</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28990">
        <property type="protein sequence ID" value="CDD28990"/>
        <property type="gene ID" value="BN815_01013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18454" checksum="B03F1B89A261D3C2" modified="2013-07-24" version="1">MELYGFSREQAFAAVEKYRERYRGKGVYENQLYPGMGALLERLSQQAVVCLATSKPEVFARTILETRQVLPCFQVVVGAELDGSRTDKAEVIQAVLEKLDHPPKEQAVMIGDRKHDILGAKKVGLESIGVQYGFAPPGELEEAGAEWIVPTVADLEKLCLSLCGAGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5K9</accession>
    <name>R6Y5K9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02372</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31228">
        <property type="protein sequence ID" value="CDD31228"/>
        <property type="gene ID" value="BN815_02372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040591">
        <property type="entry name" value="YlmH_RBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17774">
        <property type="entry name" value="YlmH_RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="1">
        <location>
            <begin position="171"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="27808" checksum="E1A567E410F555FE" modified="2013-07-24" version="1">MATEQDLLAARLEDSIKLSRKRPCFLGFLDEAQAAFCQERLSRRQDVAYLSWGGHEYAERVVLGFFPDYLEPAPEYFPITPLALSYRKEDKLTHRDFLGSFMALGVERSVIGDIVVGEGQCVAFLREEMGEYFLRNIQKIGRVGVKPSLQWDGTLPGARQFAERSGVVASERLDCLTAFLCRTSREKAAGLITAGLVFLNHREALSVSQRVKEGDLLSVRKQGRFIIDELGPLTSKGRLVVKCRKFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5T7</accession>
    <name>R6Y5T7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH lysR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00246</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31308">
        <property type="protein sequence ID" value="CDD31308"/>
        <property type="gene ID" value="BN815_00246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="297" mass="34325" checksum="46430C80838D27E2" modified="2013-07-24" version="1">MRLERLPIFIDLYETRSYTKTAQKNYVSQASVTQLVNSLEEEFGVKLFDRSTLPIQATAAGKQLYHDAKILLRQYIQLKEVLPRLEQEGASQIRLCYTSQIDLQILLPFVRQFKAAHPAVAFQVELCPFRDASQMLWAGKCDGAIGIDFEPEFTQGMETLVLYEGEYQALVPQGHPLFQREVLSREELYQYPLVMLSPEVLGRSYDGMIRHAQLDGYYPHIQQTANDLASELFVMLTENLIGFVPDNYFPEEYRGQLRRIPIENGHHQFRLELKYLPGENPAVPLFVKELSNYLKNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y603</accession>
    <name>R6Y603_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31373">
        <property type="protein sequence ID" value="CDD31373"/>
        <property type="gene ID" value="BN815_00305"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043740">
        <property type="entry name" value="DUF5685"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18937">
        <property type="entry name" value="DUF5685"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="34253" checksum="0C4BD1C2509EAC77" modified="2013-07-24" version="1">MFGYVRPFKSELLVREYDQYKAAYCQLCRALREHYGRAASFTLSYDCTFYALLALSTREAELKLHHGRCVMNPLKKCDFLQASGEAYHKAAALSVLLTYHKLRDNLEDDSFFKSLGSRLFLPFVSRKAKKAAGEYPFLAQQAQKAMEGQAQAEKECAGVDACAEPTANLLAALFKELACDEMQAVALERFGYFLGRWVYLIDAADDLAEDLGEGAFNPFIPRLGLSGKTELSQEERKAADEACNQALNATAAQMLLAFNLLDLRDFGPILENVVTKGLPEIQREILFLHIREKKKKRPEPEDLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6P5</accession>
    <name>R6Y6P5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29525">
        <property type="protein sequence ID" value="CDD29525"/>
        <property type="gene ID" value="BN815_01185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_3" evidence="1">
        <location>
            <begin position="2"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="132" mass="14504" checksum="C12D4969A19CF118" modified="2013-07-24" version="1">METCRQAGCPCNAYYMEAEDLFGKHLEEDILHARELYPHTDGIFATSDVLAAGIQTALWRLAPDYPASLPLVGFDGVSVSEYCRISTVAQPIYQMGEQAVLTLVQLINGEEAPASSILPVRFIRRKSSGPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7C0</accession>
    <name>R6Y7C0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ketose-bisphosphate aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00536</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27199">
        <property type="protein sequence ID" value="CDD27199"/>
        <property type="gene ID" value="BN815_00536"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00947">
        <property type="entry name" value="TBP_aldolase_IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000771">
        <property type="entry name" value="FBA_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01116">
        <property type="entry name" value="F_bP_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001359">
        <property type="entry name" value="F_bP_aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00167">
        <property type="entry name" value="cbbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00806">
        <property type="entry name" value="ALDOLASE_CLASS_II_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="206"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="region of interest" description="Dihydroxyacetone phosphate binding" evidence="2">
        <location>
            <begin position="227"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>dihydroxyacetone phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001359-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="30078" checksum="9E4DF713DF2BEDF6" modified="2013-07-24" version="1">MPLTTTVSMLRKAQEQGFAVGAFNVENMEMAQAIISAAEELRAPVILQTTPSTVRYAGTGMYAAMVAALAQEASVPVAMHLDHGDSFALCAQALRSGYTSVMIDGSKLPLEENIALTYKVSEMCAAVGVPVEGEIGRVGGKEDDLESDGGYTIPEEAVRFEKESGLFSMAVGVGTAHGFYKEKPQLNKELITTLRGMLQAPMVLHGASGLSDEDVKDCIRRGICKVNFATELRAAYTEGVKAVLAENPKTFDPKAYGKEARQRVKALVMERMLVCGCDGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7V2</accession>
    <name>R6Y7V2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PIN domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00610</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27379">
        <property type="protein sequence ID" value="CDD27379"/>
        <property type="gene ID" value="BN815_00610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="15116" checksum="7DC96C2908C46E3D" modified="2013-07-24" version="1">MKLLIDANVLLDVLQNRAGFVKDSSLVWKLCETGQAEGIVSALTFANLVYVMRKELAPEKIEEVCKLLSLIFHFADFSVSDMNRAAEMKWKDFEDAIQSATAERVSAAYLITRNVKDFSKSKVPALTPAEFLARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8J8</accession>
    <name>R6Y8J8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01493</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30250">
        <property type="protein sequence ID" value="CDD30250"/>
        <property type="gene ID" value="BN815_01493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425182" description="FHA domain-containing protein" evidence="4">
        <location>
            <begin position="28"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="333"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="5">
        <location>
            <begin position="417"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="299"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="356"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="299"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="357"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="499" mass="52286" checksum="1BB27BB97A69959D" modified="2013-07-24" version="1">MKRWMQRCAACLVAILCAVFVPGRALALETPAEARSGVVRVIVEMQTDLYSLETGEPVGTLQGYSSGSAFGVGAAGEETDIFVTNRHVVTLEEGEESGTTEMDGTPVYFERSITSYYVLLDNFAYNSQSFELDSSRAVPFRVIYVGAEDDADVAVLQTAEPVEGRIALALLEEEDSLQVGDDVSALGYPAISDNATSEGFLLATVEDVTLTDGTVSRFFDSVSVTAEEGLLSGHLIQSTATINAGNSGGPLVNDQGVVVGINTNTISSTDTSVSSAYYALQIRYAREALDSLEIPYDTDATQSQEPLASSLEETAASQPEDGLEGDGNPNRAWIVFLILGAVVVAGGVAAVLVAASRRSKSSPTPTQTKGMEEAPSPGPVPGPVPRPAAEGDSGFRIQGVSGALEGKRFLLPAGSPVTIGRDPKQCGVVFPPNTPGVSGKHCAVWVDQGRVYLKDLGSTHGTYLSQGSKLAPGQAMALAPGESFCLGSPQESFVIAERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8L3</accession>
    <name>R6Y8L3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Putative excinuclease ABC A subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_00113</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30265">
        <property type="protein sequence ID" value="CDD30265"/>
        <property type="gene ID" value="BN815_00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <keyword evidence="7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="14">
        <location>
            <begin position="496"/>
            <end position="826"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="534"/>
            <end position="541"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="832" mass="89773" checksum="CF7002F20D2A35B9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8L6</accession>
    <name>R6Y8L6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymuconolactone decarboxylase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30270">
        <property type="protein sequence ID" value="CDD30270"/>
        <property type="gene ID" value="BN815_00118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="9"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="144"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="229" mass="25461" checksum="7E3CD6BC750D2A74" modified="2013-07-24" version="1">MFDFKRQDPEFAERFEHFAFDEVVNEPGQQLDDVTRHLAILATLLGCQGIDAFREELPAALDGGVTPVMAKEVIYQAVDYLGMGRVLPFLRAANEILEARGVSLPLEGQATTTLEDRLEKGAQAQAEIFGEHMLEAWKAGHINRWLAANCFGDYYTRTGLDLKQREMVTFCYLAAQGGCEPQLTAHAKGNMNLGNDREFLTKVVSQCLPYIGYPRSLNAIACINKAAEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8M1</accession>
    <name>R6Y8M1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01509</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000213">
        <property type="protein sequence ID" value="CDD30275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30275">
        <property type="protein sequence ID" value="CDD30275"/>
        <property type="gene ID" value="BN815_01509"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024747">
        <property type="entry name" value="Pyridox_Oxase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12900">
        <property type="entry name" value="Pyridox_ox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="18398" checksum="2CC63865BC51ADC7" modified="2013-07-24" version="1">MFRDMRRKNQLLPQEEAEAILRQGTSGVLSLLGDGGYPYGVPLSYVYHNGKLYFHCAKAGHKLDAIRREGKCSFCVIGQDQVVAEKYTTLFRSVIAFGQVRVLEDDGEKRAALEALGERFNPGQPESLEKEIAATWNSVCVLELEIEHLTGKEAKELRNRRAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8W2</accession>
    <name>R6Y8W2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Bacterial membrane protein YfhO</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00706</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27729">
        <property type="protein sequence ID" value="CDD27729"/>
        <property type="gene ID" value="BN815_00706"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018580">
        <property type="entry name" value="Uncharacterised_YfhO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38454">
        <property type="entry name" value="PTHR38454"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09586">
        <property type="entry name" value="YfhO"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="164"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="186"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="229"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="305"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="361"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="391"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="430"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="463"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="766"/>
            <end position="786"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="830"/>
            <end position="863"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="863" mass="97940" checksum="AC5732AC0132E7F2" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9E5</accession>
    <name>R6Y9E5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01721</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000267">
        <property type="protein sequence ID" value="CDD30505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30505">
        <property type="protein sequence ID" value="CDD30505"/>
        <property type="gene ID" value="BN815_01721"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="31" mass="3215" checksum="ED5830C6D589E5D0" modified="2013-07-24" version="1">MGNNRGAKALRFVVCFVTGLAVAMAFAPKAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9E6</accession>
    <name>R6Y9E6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sigma-70 region 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00729</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000069">
        <property type="protein sequence ID" value="CDD27924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27924">
        <property type="protein sequence ID" value="CDD27924"/>
        <property type="gene ID" value="BN815_00729"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="17996" checksum="63018D270B9B666C" modified="2013-07-24" version="1">MSKQKENQNQFTIYVQGEAVPVSEEVYRVYHHYERKEEYFSYDRKRGKFQQDTGTFLPSKEDSYDRLLEQDHQFASSDVSPEDQAVSKIWMDSLARCLTQEERKLLDKLYFQDKTERQVSKELGISKSALHRRKERLLKKMKQYLDNKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9I3</accession>
    <name>R6Y9I3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Endonuclease III</fullName>
            <ecNumber evidence="5">4.2.99.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">DNA-(apurinic or apyrimidinic site) lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nth</name>
        <name evidence="7" type="ORF">BN815_01758</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>2'-deoxyribonucleotide-(2'-deoxyribose 5'-phosphate)-2'-deoxyribonucleotide-DNA = a 3'-end 2'-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5'-phosphate)-DNA + a 5'-end 5'-monophospho-2'-deoxyribonucleoside-DNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:66592"/>
            <dbReference type="Rhea" id="RHEA-COMP:13180"/>
            <dbReference type="Rhea" id="RHEA-COMP:16897"/>
            <dbReference type="Rhea" id="RHEA-COMP:17067"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136412"/>
            <dbReference type="ChEBI" id="CHEBI:157695"/>
            <dbReference type="ChEBI" id="CHEBI:167181"/>
            <dbReference type="EC" id="4.2.99.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Nth/MutY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30545">
        <property type="protein sequence ID" value="CDD30545"/>
        <property type="gene ID" value="BN815_01758"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140078">
        <property type="term" value="F:class I DNA-(apurinic or apyrimidinic site) endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019104">
        <property type="term" value="F:DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00942">
        <property type="entry name" value="Nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000445">
        <property type="entry name" value="HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005759">
        <property type="entry name" value="Nth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00633">
        <property type="entry name" value="HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01083">
        <property type="entry name" value="nth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1 5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="6">
        <location>
            <begin position="39"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="225" mass="24638" checksum="83C485A809A077E6" modified="2013-07-24" version="1">MTKKERAKLAVEALKAEYPGAVCSLEYQDPLQLLIATRLSAQCTDARVNLVTPGLFARFPTLEAFCEGTVEEIGELIRSCGFYNTKSKDILGMCLMIRDEFGGQVPDTIEELTRLPGVGRKTANLIVGDIYHKPAVVTDTHCIRIAGRLGLTANTTPEKVENDLRAILPPEESNDFCHRLVLHGRAVCTARKAYCEQCCMAPFCKKAGVGPNGEKVAAKKKPARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9K8</accession>
    <name>R6Y9K8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldose 1-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00736</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>alpha-D-glucose = beta-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:10264"/>
            <dbReference type="ChEBI" id="CHEBI:15903"/>
            <dbReference type="ChEBI" id="CHEBI:17925"/>
            <dbReference type="EC" id="5.1.3.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Carbohydrate metabolism; hexose metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the aldose epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.3" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000073">
        <property type="protein sequence ID" value="CDD27969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27969">
        <property type="protein sequence ID" value="CDD27969"/>
        <property type="gene ID" value="BN815_00736"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00242"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004034">
        <property type="term" value="F:aldose 1-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019318">
        <property type="term" value="P:hexose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015443">
        <property type="entry name" value="Aldose_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005096">
        <property type="entry name" value="GALM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="79"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR005096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR005096-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="38191" checksum="C1C1E03FDD96E097" modified="2013-07-24" version="1">MSVEKTVFGTLSDGREAALYTLKNAAGMTLVVTPYGCRIIQLLVPDKDGKLGDVVLGHRTLEEYFGANYQGTFVGRYANRIGGAEFTLNGKTYTLAKNDGNNTLHGGPGGYHQVLWDAQAQDGEEPSITFTHTSPDGDEGYPGTLQMTVTYTLKKDNTLALRYDAVCDQETPFNPTNHSFFNLSGDPQKDVLGTYLTINSKASTAVSDDLIPTGEIVSIVGGPLDFTSPKKLGDDMFAEDHLIQLNGGFDHNFCVEGEGFRKHAEAYEPESGRVMEVWSDLPGVQLFTFNKPDDGLVGKDGKPMQPHTALCLETQFYPDSVHHENFPFQYLQPGVPFSTTTEYRFSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9N0</accession>
    <name>R6Y9N0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30605">
        <property type="protein sequence ID" value="CDD30605"/>
        <property type="gene ID" value="BN815_01816"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024208">
        <property type="entry name" value="DUF3842"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12953">
        <property type="entry name" value="DUF3842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="14151" checksum="503DAB9374998B6E" modified="2013-07-24" version="1">MKQKKLLVIDGQGGRMGAALVSQCKAAGLGVQIIAVGANSAATAAMLKAGADAAATGENPVVVNARDADVICGPMGILTANALWGEITPAMAAAVSESRAQKVLIPVNRCSVTVVGVAELPLGEYVRLAVQAAKEQLEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA25</accession>
    <name>R6YA25_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01969</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30765">
        <property type="protein sequence ID" value="CDD30765"/>
        <property type="gene ID" value="BN815_01969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="68"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="26634" checksum="B16C353C755A8BCA" modified="2013-07-24" version="1">MKIHIGKEFPPHFWEAYPGEFELFHHFETTAGIPNVLFAVTTWKENGQPNVCFHGWSCFHGDKTAFFAVMGNLYQHTHTFQNIQREGCFCVNFLPMGRYESLVETIHQNGLETDEFAAGGFTPVPAHTIHAPAIEEAFLTLECTLHSVQDLSGAGITAMVIGQVQHATVEESYARGYGRRYGQGGXXPAGTARRALCCWCPRPKTCSPGRRGSPALPRCALKNWIEPQAIGKYRKKESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAA2</accession>
    <name>R6YAA2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02042</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30855">
        <property type="protein sequence ID" value="CDD30855"/>
        <property type="gene ID" value="BN815_02042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="11828" checksum="2ED02E3ACF6B55C1" modified="2013-07-24" version="1">MKVKRKAGPPLGPWDIAACVMAGLLYLDVLCFLILTVAGIGLLLVYALECGIVTGVLLLLGMFLYFLGKSRGMGKLSRRLLLGGLIAGGVLLLLFALAVGALILYTATYTAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAD4</accession>
    <name>R6YAD4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30885">
        <property type="protein sequence ID" value="CDD30885"/>
        <property type="gene ID" value="BN815_00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437556" evidence="1">
        <location>
            <begin position="30"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="21416" checksum="4B8B9145A5FFAAC6" modified="2013-07-24" version="1">MLLRSPRGAFSSTWAAASFSLGTLSPVRADSSLFRLTLFSSRASAGMKSPASRRMMSPGTSWAASMTCSFPSRSTLAWGADRFFRASMAFSALDSCIMPSRAFNTTMSKMSTGSKNSMGSWPKQATTKLTAAASSRMSIITSLNWSKNRWRFVFFLFSASLFSPYRSRRCRASWLERPAAEVCSSFRSSSWEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAF8</accession>
    <name>R6YAF8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RCK C-terminal domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02072</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30910">
        <property type="protein sequence ID" value="CDD30910"/>
        <property type="gene ID" value="BN815_02072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="6">
        <location>
            <begin position="271"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="357" mass="37284" checksum="E79ACDB98C51E22F" modified="2013-07-24" version="1">MLLTCGASAGLSAAFNAPLAGVLFSLEELHKDFSTDVLLSTMSASITADFISRTLFGLGPVFSFPELSMMPLAHYWMVLLLGALLGLVGVFYNFCVAKAQDLYAKIPWAYVRAVLPFLLAGVLLVVYPAVLGGGHNLVEAVSQDQALQGLLVLFAVKFLFSMASFGAGVPGGIFLPLLVLGAVVGSSFSQGAHLLGLDTATGNFVILGMAGLFAAIVRAPVTGIVLISEMTGSFSHLLTLSLVSLAAYVVADLLHAPPVYDMLLARLLKKGKASPAPSGEKLLLESPVSVGAPACGKAIQELAWPGRSLVVSIKRHGEELLPHGGTVLEAGDVVVLLCDQQELPQVHAALEHQCKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAX4</accession>
    <name>R6YAX4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02184</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31030">
        <property type="protein sequence ID" value="CDD31030"/>
        <property type="gene ID" value="BN815_02184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="24"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="33004" checksum="C2FB4AABD4696948" modified="2013-07-24" version="1">METIRIGTCVPGQATEKLLPHFVRAGFECVALNFHMEFPEKDLPTYWEKVRPLLEGSPVKVSSIGFYCNALENEGQRKTLEHFIDNAHLFGTDVVTTFAGALEGQPVETAIPRYKEVFGELARRAEAKGVRLAIENCPMDGTWHKATCNIGFNPKAWEMMFDAVPSRAIGLEWEPAHQMVQLIDPLPQLEEWADRVYHIHGKDATLHWDRVRKWGVFGAGEFAESRTPGYGDTDWRDVFHILYSRGYVGDLVVEGFHDPIFKEEREWAGQLHALQYLKWCRGGTEESPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB09</accession>
    <name>R6YB09_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000371">
        <property type="protein sequence ID" value="CDD31070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31070">
        <property type="protein sequence ID" value="CDD31070"/>
        <property type="gene ID" value="BN815_02223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="192" mass="19403" checksum="BF006478926B7F50" modified="2013-07-24" version="1">MHQGDNGGDAGGQAANLAEAQGDVNQQEHRGDGKAHQALLEEPGAHAGLHRAGGKQLEAQVGVGALQGLGHLGLLLGGHGLVAGEGHVHLLAAGGDVLADGDLAVTANAVHNGGLDASGIGLAALYGVEDHRAAGKLDVQLGPDDDAGQNAHHQHHNGNGKVNLSILVKMEAVSFLIHRRAHLQTAIFYAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB29</accession>
    <name>R6YB29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-isopropylmalate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000090">
        <property type="protein sequence ID" value="CDD28454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28454">
        <property type="protein sequence ID" value="CDD28454"/>
        <property type="gene ID" value="BN815_00065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="LeuA_dimer" evidence="3">
        <location>
            <begin position="4"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="107" mass="11505" checksum="6BBF1FE45768B23A" modified="2013-07-24" version="1">MGGQVLVDFEGVIRTHHVNKEVSGRGNGPIDAFFNALRALGLTDYEFVSYSEHAVSAGADSKAVSYIQLRHKGKTVFGVGMDHNISIASVKGILCAINRSVTAQEDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB96</accession>
    <name>R6YB96_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter auxin efflux carrier (AEC) family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02324</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31180">
        <property type="protein sequence ID" value="CDD31180"/>
        <property type="gene ID" value="BN815_02324"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="103"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="161"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="195"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="226"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="255"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="33677" checksum="5CDD802280101A0D" modified="2013-07-24" version="1">MESLLISLEIVLPLFLLMALGYVIKLTGMMNETSVKQVNKVIFKIFLPLLVFCNIYNTELAESFNSQLLLYAVAGVLIQFVLSLCLAILLEKDNSRRGVMLQGMFRSNFVLFGIPISTALFGDTAAGLASILIAVIIPIYNVLAVISLEMFNGKRPNVGKILLGIVTNPLIIGSVLGVLFVLFQIPIPTPVYDTITDISSIATPLAFIILGASFSFGDVGKYIKEVLLVLGAKLLVFPALFLGIALLLGFRDAPLAVLLTVFGAPIAVSSFTMAQQMGGDDKLAGQLVVFSSIFSIGTMFLLIFLLKELAFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB99</accession>
    <name>R6YB99_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Negative regulator of genetic competence ClpC/MecB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02329</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31185">
        <property type="protein sequence ID" value="CDD31185"/>
        <property type="gene ID" value="BN815_02329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="9">
        <location>
            <begin position="5"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="8">
        <location>
            <begin position="425"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="421"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="828" mass="91429" checksum="6D1935339BCF2EF8" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBR1</accession>
    <name>R6YBR1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00297</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000414">
        <property type="protein sequence ID" value="CDD31365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31365">
        <property type="protein sequence ID" value="CDD31365"/>
        <property type="gene ID" value="BN815_00297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="110" mass="12143" checksum="3FA01CD50F1BA653" modified="2013-07-24" version="1">MEFMFPIVILAAGLILIFSLSKENKVFFLAGGYFLVLGAWLLVDRIYPDAGAFAGGWGIAFRVLTAAVLVVLAVVFVKEYRKNRKSARGQEAEELPAQEKDDTDDPEGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC29</accession>
    <name>R6YC29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000107">
        <property type="protein sequence ID" value="CDD28849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28849">
        <property type="protein sequence ID" value="CDD28849"/>
        <property type="gene ID" value="BN815_00986"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="19156" checksum="3E28213374FED281" modified="2013-07-24" version="1">MKRRLTDLCLMAMMGTVMVVSKEALAFLPNVELVSLLTILFTLVFRRRVIGALAVFLLLEGVLYGFGTWWVMYLYIWPLLAGITWLFRWMKRAWQWAILSGLFGLAFGTLCSLTYFPVGGVQMVIAWIISGLSFDVVHAGGNFLLALLLYHPLRKALDQLERRLPQRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCR9</accession>
    <name>R6YCR9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="5">PPIase</shortName>
            <ecNumber evidence="5">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01039</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29039">
        <property type="protein sequence ID" value="CDD29039"/>
        <property type="gene ID" value="BN815_01039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024936">
        <property type="entry name" value="Cyclophilin-type_PPIase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044666">
        <property type="entry name" value="Cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45625">
        <property type="entry name" value="PTHR45625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001467">
        <property type="entry name" value="Peptidylpro_ismrse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="6">
        <location>
            <begin position="13"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="175" mass="19111" checksum="BD4888F5142B9743" modified="2013-07-24" version="1">MQNPIVTIQTTQGTLKVELYPEVAPNTVNNFIYLVKRGFYDGTIFHRVIPGFMIQGGDPEGTGMGGPGYGIKGEFAMNGFQNGLRHTTGVISMARSQRPNSAGSQFFIMVDDAPYLDGQYAAFGKVTEGIEVAQAIVSAPRDRADRPYEDQIMEKVTVETFGQEYPDPITGPEHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YER0</accession>
    <name>R6YER0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27036">
        <property type="protein sequence ID" value="CDD27036"/>
        <property type="gene ID" value="BN815_00492"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11715" checksum="EC7D8EA80F5CC5C2" modified="2013-07-24" version="1">MDCLERIRTLLEERGWSVYRLAQEAGVPQSTLANLFLRNNMPTVPTLERICQALGITMAEFFSQQPTLPPEEELTAQLLEEWAALSPAQKRLVLELVHQLGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG42</accession>
    <name>R6YG42_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01558</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000220">
        <property type="protein sequence ID" value="CDD30324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30324">
        <property type="protein sequence ID" value="CDD30324"/>
        <property type="gene ID" value="BN815_01558"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13508">
        <property type="entry name" value="Acetyltransf_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="7"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="17792" checksum="E3EE53E05B61BCA2" modified="2013-07-24" version="1">MEHRRFVKLREEPRWLEAAAAWFHQKWGIPQEAYRASMEACLAVRGVPQWYLAVEGERILGGLGVIANDFHPRRDLSPNLCAVYVEEDARCQGIAGALLGLACRDMAQLGYPTLYLLTDHTAFYERYGWEYLCPVRGDGEEQDSRMYIHRQTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGE7</accession>
    <name>R6YGE7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavin_Reduct domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00679</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27631">
        <property type="protein sequence ID" value="CDD27631"/>
        <property type="gene ID" value="BN815_00679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="24"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="167" mass="19511" checksum="105C742040E4083D" modified="2013-07-24" version="1">MAFREISVEQLKDNPFTLINKDWMLITAGDAEKHNTMTASWGGVGELWGKYVSTIYIRPQRYTLEFVEREEYYSLCFFGPEYRQALSLCGSKSGRDVDKDAATGLTPRFDQAAPYYEQARLGFLCRKLYRQDMEESAFLDKGLLEKWYDNDLHRMFIGEIVKVLEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGV2</accession>
    <name>R6YGV2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01790</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30579">
        <property type="protein sequence ID" value="CDD30579"/>
        <property type="gene ID" value="BN815_01790"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015424">
        <property type="term" value="F:ABC-type amino acid transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030679">
        <property type="entry name" value="ABC_ATPase_HisP-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039085">
        <property type="entry name" value="ABC_ATPase_HisP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="240" mass="26649" checksum="F1856ABAD6F16C2F" modified="2013-07-24" version="1">MIDVKDLTKTYGDHQVLKGINEHIHKGEKVAVIGPSGSGKSTFLRCLNLLEEPTSGTITFEGVDITDPKNDINKLRARMGMVFQQFNLFPHMTVKQNITLAPTKLKLMTKAQADKKALELLERVGLPDKASAYPKQLSGGQQQRIAIARALAMNPDVMLFDEPTSALDPEMVGEVLEIMKELADEGMTMVVVTHEMGFARSVATRVLFMDEGVIAEQNEPEAFFTHPQNPRLQEFLSKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH00</accession>
    <name>R6YH00_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000290">
        <property type="protein sequence ID" value="CDD30634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30634">
        <property type="protein sequence ID" value="CDD30634"/>
        <property type="gene ID" value="BN815_00145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437487" evidence="2">
        <location>
            <begin position="21"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="133"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="191" mass="21814" checksum="9BF3203E8841FF15" modified="2013-07-24" version="1">MTSFAPRMAWKVRRMRCSRAWTSTWMVTPSGMRSPSMRVRRISNSVSEEAGKPTSISRKPMAVSMRKNATFCSRSMGVTRAWLPSRKSTLHHTGAWVRVLPGQVRSARAMGWKGLYFRYPWFMTSRPFHTISPYKTKRPRRGLPSRPGRKHLRGTTRIWRVAPPFGPPCGSPADNAATRPALHSFRRETLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHA8</accession>
    <name>R6YHA8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thiazole synthase</fullName>
            <ecNumber evidence="4 6">2.8.1.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">thiG</name>
        <name evidence="8" type="ORF">BN815_01968</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H(+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:26297"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12909"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer. Forms heterodimers with either ThiH or ThiS.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ThiG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.10" evidence="4 6"/>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30764">
        <property type="protein sequence ID" value="CDD30764"/>
        <property type="gene ID" value="BN815_01968"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990107">
        <property type="term" value="F:thiazole synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04728">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00443">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033983">
        <property type="entry name" value="Thiazole_synthase_ThiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008867">
        <property type="entry name" value="ThiG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34266">
        <property type="entry name" value="PTHR34266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05690">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 6" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiG" evidence="7">
        <location>
            <begin position="9"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="184"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="206"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DXP" evidence="6">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="257" mass="27455" checksum="48418EC792FB30E2" modified="2013-07-24" version="1">MNTQDTWSLGGREFTSRFILGSGKYSLELIEAAVRDAGAQMITLAVRRANTTEKENILDYIPQGVTLLPNTSGARNAEEAVRIARLARELGCGDFVKIEIMRDTKYLLPDNQETIKATEILAKEGFVVMPYMYPDLNAARDLVSAGAACVMPLASPIGSNKGLATKDFIQILIDEIDLPVIVDAGIGRPSQACEAMEMGAAAIMANTALATAGDLPRMAAAFRQAIEAGRKAYLSGLGRVLARGASASDPLTGFLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHC8</accession>
    <name>R6YHC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01993</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30789">
        <property type="protein sequence ID" value="CDD30789"/>
        <property type="gene ID" value="BN815_01993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7163" checksum="2E58ADD430E501E2" modified="2013-07-24" version="1">MRINRVKFIAEMARQDLTVLDLAKNCCLSRATVTGVRSGKSCTQETAAKLAQGLGVPLESILEKEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHE4</accession>
    <name>R6YHE4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome-binding factor A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rbfA</name>
        <name evidence="2" type="ORF">BN815_00158</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RbfA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30809">
        <property type="protein sequence ID" value="CDD30809"/>
        <property type="gene ID" value="BN815_00158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00003">
        <property type="entry name" value="RbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000238">
        <property type="entry name" value="RbfA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023799">
        <property type="entry name" value="RbfA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33515">
        <property type="entry name" value="PTHR33515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02033">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89919">
        <property type="entry name" value="SSF89919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00082">
        <property type="entry name" value="rbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0690">Ribosome biogenesis</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="14360" checksum="C7313918723CF8A0" modified="2013-07-24" version="1">MPSFKIDRTTEDIHRELTAILREVKDPRVKDCLLSLVRVEVTNDLSYCTVYVSTMEGLERSKTAVQGLKSAAGFIRRELGKRLSLRHVPQLLFKATDSIEYGTHISQLLHHLEPEQAGDEAAPSQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHL9</accession>
    <name>R6YHL9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl hydrolase family 31</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02061</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000339">
        <property type="protein sequence ID" value="CDD30899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30899">
        <property type="protein sequence ID" value="CDD30899"/>
        <property type="gene ID" value="BN815_02061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033403">
        <property type="entry name" value="DUF5110"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17137">
        <property type="entry name" value="DUF5110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5110" evidence="1">
        <location>
            <begin position="37"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="121" mass="13241" checksum="D6C3DCEF850CE739" modified="2013-07-24" version="1">MEADAPLDKLPLFVKAGTILPLGPASQYPGAEPHPALTLRVYPGQDGSFTLYDDEGDSYRYEQGAYTETPLTWDDSARVLTIGARQGSYPGMPQSQTYRVVLGDQEQVVTVENGQELQVSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIN8</accession>
    <name>R6YIN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00838</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28401">
        <property type="protein sequence ID" value="CDD28401"/>
        <property type="gene ID" value="BN815_00838"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="6"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16692" checksum="E4CED338985B16A3" modified="2013-07-24" version="1">MFLEGLDALDQQIVSLLIENARLSYSDIGEKVGLSRVAVKSRIQALEQRGVIEEYTTIINPQKISGAVSCYFELEFSPGGFGEAVARLEACPTVTQIYRVTGSHKLHVHAVAATNQEMEDLLHHVIDTLPGLEACSCNVILSRIKDIKGLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIZ8</accession>
    <name>R6YIZ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate-specific transport system accessory protein PhoU</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00330</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in the regulation of phosphate uptake.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31399">
        <property type="protein sequence ID" value="CDD31399"/>
        <property type="gene ID" value="BN815_00330"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030643">
        <property type="term" value="P:cellular phosphate ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045936">
        <property type="term" value="P:negative regulation of phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028366">
        <property type="entry name" value="P_transport_PhoU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42930">
        <property type="entry name" value="PTHR42930"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003107">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02135">
        <property type="entry name" value="phoU_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="20"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="2">
        <location>
            <begin position="119"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR003107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="24410" checksum="72D9F780BFC4DE7A" modified="2013-07-24" version="1">MRTKFDEQLEQLNVALITTGALCEDAISTAAKALLENDMELAKKVKPIELEIDQKEREIENLCMRLLLQQQPVAGDLRQISSALKMITDLERIGDQTSDIAELLPYLQQGDITFSKVHIKEMAEATIKMVTDAIDSFVRQDLPLAHQVMEYDNVVDELFNKVKKELIQLIGEHRESGEFCIDLLMVAKYFERIGDHAVNVAEWVQYSLTGKKESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJH8</accession>
    <name>R6YJH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclic nucleotide-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28711">
        <property type="protein sequence ID" value="CDD28711"/>
        <property type="gene ID" value="BN815_00928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="1">
        <location>
            <begin position="34"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23863" checksum="2C173568050879B9" modified="2013-07-24" version="1">MRPVENAALIQRWVEESGVRGYFDTPHLVFQAYSFEKGEYITSPDVPMDKLLFCIRGTIQIYGIRDDGGISPIGLARSPAILGDVEFGNGGKSPFFSQAKTNALCLALSTREYSEQLHRDLRFLHCLLRFYGEKLERFSTQSVTGTTVEQRVLQYLEKGDAPAELVGMESATLQLRCSRRQLQRVLKKLCLQGKIEKVGKGRYRLAADGKSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK18</accession>
    <name>R6YK18_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31769">
        <property type="protein sequence ID" value="CDD31769"/>
        <property type="gene ID" value="BN815_00469"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007211">
        <property type="entry name" value="DUF378"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37304">
        <property type="entry name" value="PTHR37304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04070">
        <property type="entry name" value="DUF378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="69" mass="7623" checksum="58AB54DFA4A438D3" modified="2013-07-24" version="1">MSILDRIALALTVIGGINWGLVGIFRFDLVAWLFGGQDALISRIIYTVVGIAALWCISLLFRGRDSVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK36</accession>
    <name>R6YK36_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flavodoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00477</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000450">
        <property type="protein sequence ID" value="CDD31789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31789">
        <property type="protein sequence ID" value="CDD31789"/>
        <property type="gene ID" value="BN815_00477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12682">
        <property type="entry name" value="Flavodoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437578" description="Flavodoxin-like domain-containing protein" evidence="1">
        <location>
            <begin position="19"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="3"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="10742" checksum="4052E358C00FB526" modified="2013-07-24" version="1">MSKILVAYFSASGVTARAAQAIAEAVGGDLYEIAPAQPYTAADLDWTNKQSRSSLEMRDTACRPALAAAVENVEQYDTVFVGFPIWLAYHKLIQCTQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKR7</accession>
    <name>R6YKR7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000127">
        <property type="protein sequence ID" value="CDD29171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29171">
        <property type="protein sequence ID" value="CDD29171"/>
        <property type="gene ID" value="BN815_01076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="9"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="21239" checksum="EB6AD8A8A67D2384" modified="2013-07-24" version="1">MGFGGKPERYIQRAVACGSHYLTCALIPQEVDSKEKLACFAEKLSNIAHQVHLAGLTFAFHPIGSDYRLMDGVPVYKRLMDLLPNEVQLTFCVYATFGSGTDYRQVLRDYAGRLVLVHFKDSLRKPDGNGQLTPLGEGSHNWQPIAAACESSGVKWVFAEQEQWDRDAFECSTVSFCYLNKVLNAGKNRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMK4</accession>
    <name>R6YMK4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29846">
        <property type="protein sequence ID" value="CDD29846"/>
        <property type="gene ID" value="BN815_00105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="30661" checksum="017B0C4B0B7CC401" modified="2013-07-24" version="1">MEQLYPTRKLTWPEAAKLAQKRVEEILHKEVSCQMALEDETYWTLYSPTYMFSTEELELLLQAGRATKEVWEEAIPQEGNASRSLGMELTRLLLKQALHGQWSQEHCTEEGLWLLDYCSCGAQKPALRLPGVWVNLKDLKSQRELLDYLEKHGPTHSSLMDFCEEYRKKYHNDLCWPYPISDGNHMGTFFVPVKEGILSLPYDRVEREDYEVFTLEDACLCDATSMEVFLEDWDSFSGQLRQAMENMAWALRRLELKKEEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNC4</accession>
    <name>R6YNC4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01364</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the V-ATPase proteolipid subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30081">
        <property type="protein sequence ID" value="CDD30081"/>
        <property type="gene ID" value="BN815_01364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033179">
        <property type="term" value="C:proton-transporting V-type ATPase, V0 domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000245">
        <property type="entry name" value="ATPase_proteolipid_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00122">
        <property type="entry name" value="VACATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="7">
        <location>
            <begin position="16"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="7">
        <location>
            <begin position="97"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="16712" checksum="3CEC815A4A0CB57B" modified="2013-07-24" version="1">MNGFDWNILGIVFALLGGMLAALMAGIGSAVGVGMAGQAAAGAVTENPSLFGKVLVLQLLPGTQGIYGLLIGFIVLTQVGILGGDPNVSAVKGLLYLAACLPMAIVGLVSARWQTKASIASISLLVKKPEQFGKAMTLPVMVETYAVLALLISILAIFGIGGLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNT5</accession>
    <name>R6YNT5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein conserved in bacteria (DUF2325)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01515</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0751 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30281">
        <property type="protein sequence ID" value="CDD30281"/>
        <property type="gene ID" value="BN815_01515"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016772">
        <property type="entry name" value="UCP020408"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10087">
        <property type="entry name" value="DUF2325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="10227" checksum="1C78BE277344AF6F" modified="2013-07-24" version="1">MSVVIVGGNERMAAQYEGICKEHGCKAKVFTKENGSLKRKLGSPDLLILFISTVSHKMVISVTQEAKKNQIPVARIHTSSATALRAALSEWAAAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNU4</accession>
    <name>R6YNU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ACT domain protein PheB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30291">
        <property type="protein sequence ID" value="CDD30291"/>
        <property type="gene ID" value="BN815_01525"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008310">
        <property type="entry name" value="UPF0735_ACT_dom-cont"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF025624">
        <property type="entry name" value="ACT_PheB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="70"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="15668" checksum="AD31FA26A20FE830" modified="2013-07-24" version="1">MKNDSYLVVEESALPEVYQKVVKANALLESGEASTASEAVRKAGISRSVYYKYRDAVFPYTQKASSGILTVQVILTDRPGVLVSLLTVFYQAGANILTVNQNIPVKGRAFVSVSARIDTMEQAPGELIESLKQVGGVIKIDSIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPH6</accession>
    <name>R6YPH6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional protein FolC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000259">
        <property type="protein sequence ID" value="CDD30481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30481">
        <property type="protein sequence ID" value="CDD30481"/>
        <property type="gene ID" value="BN815_01697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="PTHR11136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_C" evidence="1">
        <location>
            <begin position="11"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="15934" checksum="CF96E7078F39FAC1" modified="2013-07-24" version="1">MAARFEKAFIPARMEVISQQPLVLLDGGHNPGCSQALRQALEEFVPQRKVAIMGVMADKDSRGELQVLGPLFSQIVTVAPEGHRAMPAQQLAQIAQEFCPKVVPAGSCREALAVAARAMKQDAALVVCGSFYLAGEIREMLLAKFRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPQ0</accession>
    <name>R6YPQ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01744</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30531">
        <property type="protein sequence ID" value="CDD30531"/>
        <property type="gene ID" value="BN815_01744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="5">
        <location>
            <begin position="3"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="4">
        <location>
            <begin position="163"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="339" mass="37505" checksum="8735EF44EEF915FA" modified="2013-07-24" version="1">MKANIKKISELTGFSPATVSNALNNKRGVNKETAEKIRQTAREIGYLAEWHVSSIKLVMYRASGAIVNDSPFFSSLVAGVEAEARNFGFDTLVCNLYQHAADYDSQVEELVNDPSSALLILATELDSREAARFQEALAPVVMLDNWYEDLNFNAVLIDNTDAASAAVRYLIEKGHRKIGHLKGSYGIKNFYYREEGYIRTLRENGLECDPGHTFLLTPSMEGACADMEALLQREPDLPTAFFADNDRIALGAIRALKQNGYNVPGDVSVVGFDDLPFCAISSPPLTTIKVYNREMGSAAVRRLMELVKYGDSYCTKVQVRSSFVERDSVRDLNGASQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ44</accession>
    <name>R6YQ44_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01921</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30716">
        <property type="protein sequence ID" value="CDD30716"/>
        <property type="gene ID" value="BN815_01921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="7"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="6838" checksum="2A9682A3ED25C91E" modified="2013-07-24" version="1">MQAIGEDCAAIDGEKCIACFRCVKNCPVQAKGVFTPEYQSFAAAFSEKLKEPKENQYFLGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ74</accession>
    <name>R6YQ74_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30746">
        <property type="protein sequence ID" value="CDD30746"/>
        <property type="gene ID" value="BN815_01950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045057">
        <property type="entry name" value="Gcn5-rel_NAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031165">
        <property type="entry name" value="GNAT_YJDJ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31435">
        <property type="entry name" value="PTHR31435"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14542">
        <property type="entry name" value="Acetyltransf_CG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51729">
        <property type="entry name" value="GNAT_YJDJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10298" checksum="8E2EDD7334E822C6" modified="2013-07-24" version="1">MEFQKEPGRIFALGEDGKLLAEITFPTGEDGVADIDHTFVDESLRGQGVASQLVRAAAAELRAQGKRAKTSCWYAAQWFEKHPQEQDLLYKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQL4</accession>
    <name>R6YQL4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PNP_UDP_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00169</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30866">
        <property type="protein sequence ID" value="CDD30866"/>
        <property type="gene ID" value="BN815_00169"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="1">
        <location>
            <begin position="52"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="255" mass="28005" checksum="0678180642741AA4" modified="2013-07-24" version="1">MLCNEFDPDRKALIDPQEQFRPIAGFPEICVMAFSAHIVEKCLERYGGEQIADVPFCTGRVPIYRVVIDGTEVALSMPHVGGPAASAFIEEVWPRGGKYFVFFGAAGVLDRNIPLNSFILPTAAVRDEGLSYHYLPPAEEVALDPACVAACREALESLGLPYTQGKTWTTDAFYRETRGKMERRKAQGCVSVEMECAALAAVAQFRGLRFAQFFYTTDNLDGPVWDSGVLHQKGASVTEECIAAAVETGRRLRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQN0</accession>
    <name>R6YQN0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Smr domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30881">
        <property type="protein sequence ID" value="CDD30881"/>
        <property type="gene ID" value="BN815_00184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036063">
        <property type="entry name" value="Smr_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9169" checksum="D31ACBD1A7BD358C" modified="2013-07-24" version="1">MRFQIQGTVATADLHGVYQQDAKDLLSGWLNTAPAAVTELRVIHGYQRGTALRDMLRSGFSHPRVKAVLPSLNPGETRLVLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR11</accession>
    <name>R6YR11_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02150</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30991">
        <property type="protein sequence ID" value="CDD30991"/>
        <property type="gene ID" value="BN815_02150"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009825">
        <property type="entry name" value="ECF_substrate-spec-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07155">
        <property type="entry name" value="ECF-ribofla_trS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="189" mass="19629" checksum="8479F909777599B9" modified="2013-07-24" version="1">MKQESKWIYRVTLTAVFAALVFVSSMISVPIPVAIGDVTRIHLGNIFCLLSGFVLGPVGGGLAAGLGSALYDMTNPAYIASAPFTFAFKFMLAAVCGWIAWAKGSRAENHGQNILAAIAGSATYMVLYLGKSFIEGMLLGSALGPVLLSVATKAVTSGVNAVIAVIVSVPLCAAIRLALKKSHLLEKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR52</accession>
    <name>R6YR52_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RibD_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000357">
        <property type="protein sequence ID" value="CDD31006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31006">
        <property type="protein sequence ID" value="CDD31006"/>
        <property type="gene ID" value="BN815_00195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="62"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="316" mass="35748" checksum="8DDF5905149518BE" modified="2013-07-24" version="1">MATSLFKMPFDPERLKVQRIYQSPELSHCQVETMTCPKIQEIYGDLKLLELHEDRPCTYTSLVTSIDGRIAFTDAPQGPLIAKKNKYDPAGADTDWFILNMLRAVSDGVMLGAGTMNAEADYTCHVFDQDMEDMRIANGKNPVPWNIVTSLDATDIPFDHILFRSPEVPVMISTSRKGAALVKENLKNDAYFVDAPTLEDVTEELIQGMKENADKVLVIGTGDTAPDSKVALYVLKKFGIDRLLVETPSYMHYLVSQKMMDELFFNYSCIYVGGQALTIGKFGKEFTSQDHPHTRMLSIHTHSDHFFYLRHKLLYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRG0</accession>
    <name>R6YRG0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Prophage Lp1 protein 65</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02315</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31171">
        <property type="protein sequence ID" value="CDD31171"/>
        <property type="gene ID" value="BN815_02315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.570.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035451">
        <property type="entry name" value="Ada-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044929">
        <property type="entry name" value="DNA/RNA_non-sp_Endonuclease_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044927">
        <property type="entry name" value="Endonuclea_NS_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13930">
        <property type="entry name" value="Endonuclea_NS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57884">
        <property type="entry name" value="SSF57884"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425797" evidence="2">
        <location>
            <begin position="31"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="domain" description="Endonuclea_NS_2" evidence="3">
        <location>
            <begin position="70"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="302" mass="32852" checksum="2C821CAE63C1DE7E" modified="2013-07-24" version="1">MKKRLLSCLPLLLCLALVLTGCQGELPSGASQTSSAAQVSLEELPAYAGEPYVELDGNQPQLFLEDFTGESFETYSSLDSLGRCGAAYACIGQDLMPTEDRESISSVHPTGWVQAEYSFVDGGSLYNRCHLIGFQLTGENANEENLITGTRYLNVEGMLPFENLVADYIKETGDHVLYRVTPLFEGDNLVASGVEMEALSVEDEGDGVSFHVYVYNVQPGVEIDYATGESWESGQASSAPEESQSSAAEEARDYVLNTSSHKFHLPSCSSVEAMSEKNREDYHGTREELLAQGYEPCGSCNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRM8</accession>
    <name>R6YRM8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02390</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000387">
        <property type="protein sequence ID" value="CDD31246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31246">
        <property type="protein sequence ID" value="CDD31246"/>
        <property type="gene ID" value="BN815_02390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="12305" checksum="17CC500D70BAA154" modified="2013-07-24" version="1">MQDLEKLKEIEELGLEEPDSPGPQEPEGRGGSNVPLVQGALCLLVLGALLLLRYLEAPAYDTFTAWYQQEASQIIQLPAWEEALPQGPTAGPSPSAQPTPSPSPWEGEASLQRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRT9</accession>
    <name>R6YRT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31301">
        <property type="protein sequence ID" value="CDD31301"/>
        <property type="gene ID" value="BN815_00239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="224" mass="26310" checksum="F03C053764B5D25B" modified="2013-07-24" version="1">MKPAHGMYTFLFCFSMGITFLSQFVANNYLYTILLSIGCGGIASVTIAWLIDIRNFRQARKENNYKFSLIMNGYVQLYKRLLFVAANECCGLYHDEAERSFEEWLKMLCNEERYLRKGAPTMERRCEFLAGTVHAIQEYLERFQAQSAVLILGGYPNIDKMLDFFTIQHIHCWGTLNLLRAGNYKAFCETTNILYVEFIKMFPEYSQEFPQKYNIEIAMKWIDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS34</accession>
    <name>R6YS34_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Acetolactate synthase</fullName>
            <ecNumber evidence="4 8">2.2.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_00312</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="8">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the TPP enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="4 8"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31381">
        <property type="protein sequence ID" value="CDD31381"/>
        <property type="gene ID" value="BN815_00312"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012846">
        <property type="entry name" value="Acetolactate_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000399">
        <property type="entry name" value="TPP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00118">
        <property type="entry name" value="acolac_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00187">
        <property type="entry name" value="TPP_ENZYMES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="11">
        <location>
            <begin position="3"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="9">
        <location>
            <begin position="192"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="10">
        <location>
            <begin position="384"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="539" mass="58233" checksum="D7580DCED3AC43D9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT56</accession>
    <name>R6YT56_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00475</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000450">
        <property type="protein sequence ID" value="CDD31786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31786">
        <property type="protein sequence ID" value="CDD31786"/>
        <property type="gene ID" value="BN815_00475"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="91"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="206" mass="22708" checksum="1AAC5CDF1FDDCBD9" modified="2013-07-24" version="1">MKTGKITAKLRDAVPVCLMVNGEEVKRYKNIELPDELKEVEMTDFHFNVHMDGKITFEIHYEEGVLPEIFPEARTRVSRAAKAAAKAAAQESTEVLTVEATKPETETAQEDSLQPDEIPSEDSGEPITEENEPEGIEAAYHVTGVRRKELVAAVGDFIGTKPEYLRAPTYAFAVGNYNIDKEGTLTGPENPALIESLKEQGFIAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA83</accession>
    <name>R6ZA83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">S1 RNA binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00609</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27377">
        <property type="protein sequence ID" value="CDD27377"/>
        <property type="gene ID" value="BN815_00609"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="209"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="363" mass="39980" checksum="00C4074B052AD9AB" modified="2013-07-24" version="1">MPNEMREYENQEMEGNESPVPQEDEERSVEGIQKEQAPAMEEPAAPAVPAQPSAHRSRATQTAARRSSVVAIGAQLQAETEAEKNQNALLDLVESMKSRRVLSGTIQGVERPENSPSCSMAVLYHGDFKVIIPAEKMVDPPEDLHGLPKSEVLFSMVNRRMGAEVDYVVKGVDQESGLAAASRLEAMAIKRREYYTGAGRDGNNLLYEGVCAEARVVAVVRAGVFVELFGVETFIPLRELSYQRMLDATAVYQPGQRVVVKLLEIHREDRDHIQVAASVKQASANPYEKALRRYSVGNRYVGTVSMVDTTGVFVALDGGVDCLCSYPPRGRPPRGARVTVRILGINHETNRIWGVITHVSMPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAB1</accession>
    <name>R6ZAB1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00618</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27402">
        <property type="protein sequence ID" value="CDD27402"/>
        <property type="gene ID" value="BN815_00618"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043752">
        <property type="entry name" value="DUF5697"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18954">
        <property type="entry name" value="DUF5697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="20732" checksum="1DB771D4398036E1" modified="2013-07-24" version="1">MLLTDEQYVIKWLSQYGPLPKTQVVRLLKDKSPATAERLLNRMKRDQRIADVGDGYYLGLDPYCTPDQRVILAVWVLLQFIDRVEPLAHYPATYPSQLFFLKENTGYEIVVLYEGEQHLAKLLHPQEDLKYIFVVPKIQMVHQLVLPRAPCLFSTVEFQGQEEPQVHFFAEEVRGNGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB28</accession>
    <name>R6ZB28_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative stage III sporulation protein AG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00696</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27677">
        <property type="protein sequence ID" value="CDD27677"/>
        <property type="gene ID" value="BN815_00696"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="94"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="18937" checksum="778DE087801597F5" modified="2013-07-24" version="1">MEPGKWKQALGGLLQKEKAVKLVVLLGICGIALIGLSSFWEPSGQQDAPAESSVPAADYRGELEESLCRIVTAITGEAQPTVVVTLSDNGRSLYAADERESGRQEESASSQERETSPILLEDAQGNQHALTVTQTQPEVQGVVVVSDFAGDPAVREKLLTAVCTALDLSSARVCVTSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBS7</accession>
    <name>R6ZBS7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2">2.6.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00731</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000071">
        <property type="protein sequence ID" value="CDD27932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27932">
        <property type="protein sequence ID" value="CDD27932"/>
        <property type="gene ID" value="BN815_00731"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SIS" evidence="5">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="15932" checksum="2B582DB86D6963D0" modified="2013-07-24" version="1">MYFIGRNVDYAASLEASLKLKEISYIHSEAYTAGELKHGPISLLEDGTLVIAIATYEKLFDKMMSNVREVKARGAVVLGITVRGKEEALKQETDYQFCVPDITDFMLPSLSILPLQLFAYYVASMKGCDIDKPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZC75</accession>
    <name>R6ZC75_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12 13">DNA primase</fullName>
            <ecNumber evidence="12">2.7.7.101</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">dnaG</name>
        <name evidence="16" type="ORF">BN815_00762</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12 13 14">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12 13 14">Binds 1 zinc ion per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer. Interacts with DnaB.</text>
    </comment>
    <comment type="domain">
        <text evidence="12">Contains an N-terminal zinc-binding domain, a central core domain that contains the primase activity, and a C-terminal DnaB-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12 13">Belongs to the DnaG primase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.101" evidence="12"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28097">
        <property type="protein sequence ID" value="CDD28097"/>
        <property type="gene ID" value="BN815_00762"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003896">
        <property type="term" value="F:DNA primase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03364">
        <property type="entry name" value="TOPRIM_DnaG_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00974">
        <property type="entry name" value="DNA_primase_DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013264">
        <property type="entry name" value="DNA_primase_core_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037068">
        <property type="entry name" value="DNA_primase_core_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019475">
        <property type="entry name" value="DNA_primase_DnaB-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006295">
        <property type="entry name" value="DNA_primase_DnaG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030846">
        <property type="entry name" value="DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034151">
        <property type="entry name" value="TOPRIM_DnaG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002694">
        <property type="entry name" value="Znf_CHC2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10410">
        <property type="entry name" value="DnaB_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08275">
        <property type="entry name" value="Toprim_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01807">
        <property type="entry name" value="zf-CHC2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002811">
        <property type="entry name" value="DnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00400">
        <property type="entry name" value="ZnF_CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01391">
        <property type="entry name" value="dnaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 12 13" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 12 13" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 12 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2 12 13" id="KW-0639">Primosome</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 12 13" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 12 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12 13" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 12 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="15">
        <location>
            <begin position="252"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CHC2-type" evidence="12 14">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR002811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR002811-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD28097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="586" mass="66190" checksum="25067035DF165812" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCR6</accession>
    <name>R6ZCR6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00808</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28292">
        <property type="protein sequence ID" value="CDD28292"/>
        <property type="gene ID" value="BN815_00808"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="80"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="19823" checksum="A0ABC33CC6003A48" modified="2013-07-24" version="1">MERSKGALCLKLFLKFLKIGAFTFGGGYAMIPLIRREIALREGWIEDKDILDILAVSESTPGPIAVNTATFVGYRVAGPLGAACATVGVVLPSFVIIFALSFVLRQFEDFPAVRYAFWGIRVAVVALVLSALVSMAKECPWNIVSYLLAAGAFVLVGLLGANSIVVLIACALVGLAASKLKIGGMKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDG5</accession>
    <name>R6ZDG5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Glucose-inhibited division protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">mnmG</name>
        <name evidence="11" type="synonym">gidA</name>
        <name evidence="14" type="ORF">BN815_00870</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 11">NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 11">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9 11">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the MnmG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28542">
        <property type="protein sequence ID" value="CDD28542"/>
        <property type="gene ID" value="BN815_00870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002098">
        <property type="term" value="P:tRNA wobble uridine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00129">
        <property type="entry name" value="MnmG_GidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004416">
        <property type="entry name" value="MnmG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002218">
        <property type="entry name" value="MnmG-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020595">
        <property type="entry name" value="MnmG-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026904">
        <property type="entry name" value="MnmG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044920">
        <property type="entry name" value="MnmG_C_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040131">
        <property type="entry name" value="MnmG_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806">
        <property type="entry name" value="PTHR11806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11806:SF0">
        <property type="entry name" value="PTHR11806:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01134">
        <property type="entry name" value="GIDA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13932">
        <property type="entry name" value="GIDA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00136">
        <property type="entry name" value="gidA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01280">
        <property type="entry name" value="GIDA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01281">
        <property type="entry name" value="GIDA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0274">FAD</keyword>
    <keyword evidence="5 11" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8 11" id="KW-0520">NAD</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="GIDA" evidence="12">
        <location>
            <begin position="9"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="GIDA_C" evidence="13">
        <location>
            <begin position="400"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="272"/>
            <end position="286"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD28542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="627" mass="69438" checksum="340C80D96FE20F73" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDT7</accession>
    <name>R6ZDT7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Cell division protein FtsX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00921</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28692">
        <property type="protein sequence ID" value="CDD28692"/>
        <property type="gene ID" value="BN815_00921"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004513">
        <property type="entry name" value="ABC_transpt_FtsX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040690">
        <property type="entry name" value="FtsX_ECD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47755">
        <property type="entry name" value="PTHR47755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18075">
        <property type="entry name" value="FtsX_ECD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003097">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="172"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="219"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX_ECD" evidence="10">
        <location>
            <begin position="61"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021907"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR003097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF18075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="32539" checksum="D21539E6AACB74DF" modified="2013-07-24" version="1">MSLHSIGYLFREGLKSLWKNRTMSIASIGVLIACLLMTGVAALLTLNISATMQSVEGNNVITVYLSSDVPALTAVRIGEEIRQIDNIAECTFVPKDTALSGVMQDIDGGGTLFDSFTGDNNPLPDSYEISLADLSIYDETVSQITAIEGVESVSNYSHVAETLSSLDRVVRYGSVGIVAVLAVVSLFIISNTVKVTIFSRRMEINIMKSVGATNGFVRVPFIVEGIVIGIISGLVSATILYYAYDSLVKVVINLAPFLTIVNIHPYVFALYGVYIITGMLFGLLGGTISIGKYLKKQGENAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZE37</accession>
    <name>R6ZE37_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00958</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28787">
        <property type="protein sequence ID" value="CDD28787"/>
        <property type="gene ID" value="BN815_00958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="32"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8579" checksum="0FAA20E73032586B" modified="2013-07-24" version="1">MWAQPWTKSSKKYHTAPTHRAIPTKEATQEGFFVKNKNREKAKHTAPTPKAGSGATGTWKAPKKQPRAPVQPKASSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZE91</accession>
    <name>R6ZE91_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc/iron permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00979</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28837">
        <property type="protein sequence ID" value="CDD28837"/>
        <property type="gene ID" value="BN815_00979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="240"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="263" mass="27523" checksum="4B7A2CF5AB7A3003" modified="2013-07-24" version="1">MQPVLWAAGGTGFTCLMTALGASMVFFFRKRVSAGAQRIFLGFAAGVMVAAAVWSLLIPAIEEAESSGLPGWLPAAGGFLLGVLFLLAMDYLMPHLHLGAQKPEGRSSSWKRTTLLIFAVTLHNIPEGMAVGFSFALAAQHGNDPALYASAMALAIGMGIQNFPEGAAISLPLRQEGLPAWKSFLYGALSGVVEPIFGILAVLVAGSLQPLLPWLLAFAAGAMLYVVVEELIPEAHLGEHSNVGTLGVMAGFLVMMVLDTALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEV9</accession>
    <name>R6ZEV9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">PMT_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01026</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29007">
        <property type="protein sequence ID" value="CDD29007"/>
        <property type="gene ID" value="BN815_01026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="148"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="220"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="402"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="430"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="452"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="130"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="489" mass="53227" checksum="771AEED471A5A39D" modified="2013-07-24" version="1">MGEKLGWLGEKLAFGCGALFSLIVVVQGALTACRGGGWALFTLAGLGGMGALVLLGVRYLKPARAFSLGLFTLRLAIALGVVFLFGAQPVQDFKTMYDAACQLARGSREYLQTDYFYNWAYQTGFVAYEALVVRLFGEGLLPLQVLNAVWMAGTGCLVYGIARRFLPETGAMAASLLYALYPGPYFLAAVLTNQHIAVFFFYLGFWLLARREKPSPGGAVLAGLCLAVGNVMRPLGTVIVLALVCWALVRLLRWKGPGVLKAGAPLLAAGVAYFISTELFDWLVRVTGLNPEGLVNNLPLWKFVLGFNLESGGAWNQADYNAYYLLPRDQAPQAMEEIVGQRLSSLGLGGFLQLFWKKSQTMWGSLEYLTWGFGHLNGEAQVLGGLTLSQCLNALNYFDKGVFLLAFLLGGLALVHGVRKGWGDGARLPVMLAFLLCGYYGAHLFIEVQARYRYFLMPVLFLLAGAGAQLVLAWWQGRKNSGAKTPETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGI1</accession>
    <name>R6ZGI1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF3502 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01194</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000163">
        <property type="protein sequence ID" value="CDD29562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29562">
        <property type="protein sequence ID" value="CDD29562"/>
        <property type="gene ID" value="BN815_01194"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022627">
        <property type="entry name" value="DUF3502"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12010">
        <property type="entry name" value="DUF3502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438895" description="DUF3502 domain-containing protein" evidence="2">
        <location>
            <begin position="36"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3502" evidence="3">
        <location>
            <begin position="381"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="519" mass="56258" checksum="2E964C0908353D50" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGL4</accession>
    <name>R6ZGL4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01201</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29597">
        <property type="protein sequence ID" value="CDD29597"/>
        <property type="gene ID" value="BN815_01201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="29"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10759" checksum="D5403AFE3A8C7B62" modified="2013-07-24" version="1">MESIYYILCWVGCNLEQKLRRNTTLGDNLRRLRKAAGLTQAMAVAQLQLLGFDISREILSQMENGRYNVPVSLLKALKQIYKVPSYDDFFKDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGR2</accession>
    <name>R6ZGR2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Isoleucyl-tRNA synthetase</fullName>
            <shortName evidence="10">IleRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ileS</name>
        <name evidence="14" type="ORF">BN815_00094</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="10">IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29647">
        <property type="protein sequence ID" value="CDD29647"/>
        <property type="gene ID" value="BN815_00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07961">
        <property type="entry name" value="Anticodon_Ia_Ile_ABEc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02003">
        <property type="entry name" value="Ile_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033709">
        <property type="entry name" value="Anticodon_Ile_ABEc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023586">
        <property type="entry name" value="Ile-tRNA-ligase_type2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42780">
        <property type="entry name" value="PTHR42780"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 10 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="12">
        <location>
            <begin position="22"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="13">
        <location>
            <begin position="678"/>
            <end position="829"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="10">
        <location>
            <begin position="50"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="10">
        <location>
            <begin position="591"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="594"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD29647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1039" mass="118711" checksum="9AEAE8F1BF18915C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGV6</accession>
    <name>R6ZGV6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF3854 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01226</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29692">
        <property type="protein sequence ID" value="CDD29692"/>
        <property type="gene ID" value="BN815_01226"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01029">
        <property type="entry name" value="TOPRIM_primases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036977">
        <property type="entry name" value="DNA_primase_Znf_CHC2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024385">
        <property type="entry name" value="DUF3854"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034154">
        <property type="entry name" value="TOPRIM_DnaG/twinkle"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12965">
        <property type="entry name" value="DUF3854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3854" evidence="1">
        <location>
            <begin position="243"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="346" mass="38624" checksum="1410ED3F4DB368E2" modified="2013-07-24" version="1">MELFHMVDVIPLLGLPTPPAGKSSYNIPCPCCEDKPKGKHLNINLRKDVFRCPRCGFSGGVLDLYAFYAKIPREKALEELLDRKGKIFRPQQARLPAVEENPLTGVEERHATYTALLQSLTLASDHRENLLSRGLSPEEIHRLGYKTTPVLGFSSLAKRLREKGLYLAGVPGFYKKLSQWTLKIPGRGILIPVRDVQGQIQGLQVRLDNVEKRKFRWLSSNGLEEGCGAKTWVHLAGEPRPLVLLTEGPMKADVIHFLTGQTVLAVAGVNSLSQLKPALEKLQAAGMEKVMTAFDMDYLINPHVRAGQENLAHLLDRCGISYGTYLWDPRYKGLDDYIWGCLCGPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHH7</accession>
    <name>R6ZHH7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative pre-16S rRNA nuclease</fullName>
            <ecNumber evidence="2">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01303</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YqgF HJR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29917">
        <property type="protein sequence ID" value="CDD29917"/>
        <property type="gene ID" value="BN815_01303"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000967">
        <property type="term" value="P:rRNA 5'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16964">
        <property type="entry name" value="YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00651">
        <property type="entry name" value="Nuclease_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005227">
        <property type="entry name" value="YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33317">
        <property type="entry name" value="PTHR33317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03652">
        <property type="entry name" value="RuvX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00250">
        <property type="entry name" value="RNAse_H_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="YqgFc" evidence="3">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="15481" checksum="821E3FF968CF66EC" modified="2013-07-24" version="1">MIILGIDLGKARTGVAICDRGELLASPLTVVNEHNRERLVERLAALAQKNRAELLAVGLPRNMDGTEGESAKNARKIGALLEEAASLPVAFVDERGTTVTAHGYLNETNTRGKRRKAVVDAVAATVILQNYLDYRRLHKPEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIS8</accession>
    <name>R6ZIS8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thymidylate kinase</fullName>
            <ecNumber evidence="3">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tmk</name>
        <name evidence="5" type="ORF">BN815_01589</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>ATP + dTMP = ADP + dTDP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the thymidylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000231">
        <property type="protein sequence ID" value="CDD30362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30362">
        <property type="protein sequence ID" value="CDD30362"/>
        <property type="gene ID" value="BN815_01589"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:thymidylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018095">
        <property type="entry name" value="Thymidylate_kin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01331">
        <property type="entry name" value="THYMIDYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate_kin" evidence="4">
        <location>
            <begin position="6"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="222" mass="24939" checksum="1973413C1067D0C6" modified="2013-07-24" version="1">MSLVVLEGLDGSGKGTQAKLLAQALAGRGVPLRPVTFPDYSSPSSSLVRMYLNGEFGSAPEDVNAYAASAFYAVDRFASFRKDWGEDYRQGKLILCDRYATSNMVYQMGKAPREEWDRYLAWVEDFEYRKLGIPRPDLVLYLDMPIEVSQKLLLERYHGDSGKKDIHESHLDFLCACRESARYAGQRLGWREIPCAKDGEPLPVEEIHQAVLAAVSPLLVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIW1</accession>
    <name>R6ZIW1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01618</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30397">
        <property type="protein sequence ID" value="CDD30397"/>
        <property type="gene ID" value="BN815_01618"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018658">
        <property type="entry name" value="DUF2089"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09862">
        <property type="entry name" value="DUF2089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="15057" checksum="B8098EA02D5ADFE6" modified="2013-07-24" version="1">MEKKNFHAPAQCPVCGERMLVTKLRCSHCGTELSGEFAPCRFCRLEEKHLQFVETFLRCRGSIKEVERALGVSYPTVKNMLDAALTALGLDEKPELRALREKEERAEILQRLSDGEIDVDTAIEALHQLKGEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ06</accession>
    <name>R6ZJ06_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA-specific adenosine deaminase</fullName>
            <ecNumber evidence="3">3.5.4.33</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tadA</name>
        <name evidence="5" type="ORF">BN815_01663</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine(34) in tRNA + H(+) + H2O = inosine(34) in tRNA + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:43168"/>
            <dbReference type="Rhea" id="RHEA-COMP:10373"/>
            <dbReference type="Rhea" id="RHEA-COMP:10374"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:82852"/>
            <dbReference type="EC" id="3.5.4.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.33" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000245">
        <property type="protein sequence ID" value="CDD30442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30442">
        <property type="protein sequence ID" value="CDD30442"/>
        <property type="gene ID" value="BN815_01663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052717">
        <property type="term" value="F:tRNA-specific adenosine-34 deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002100">
        <property type="term" value="P:tRNA wobble adenosine to inosine editing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00972">
        <property type="entry name" value="tRNA_aden_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028883">
        <property type="entry name" value="tRNA_aden_deaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14437">
        <property type="entry name" value="MafB19-deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="4">
        <location>
            <begin position="8"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="16862" checksum="7AF6A004A9BF1285" modified="2013-07-24" version="1">MMLPLAFLPEKRFMLRALELAQEAADAGEVPVGAVVVKEGRVIGEGRNRREAGKTALAHAELEAIHQACQALGTWRLTGCDLYVTLEPCPMCTGAIINAHVDRVVYGADDDRAGCCGTAADLFALPYSHRPELYRGFFEAEAKALLRAFFQALRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJA6</accession>
    <name>R6ZJA6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SH3b domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01740</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30527">
        <property type="protein sequence ID" value="CDD30527"/>
        <property type="gene ID" value="BN815_01740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003646">
        <property type="entry name" value="SH3-like_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08239">
        <property type="entry name" value="SH3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00287">
        <property type="entry name" value="SH3b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51781">
        <property type="entry name" value="SH3B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427048" description="SH3b domain-containing protein" evidence="2">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="SH3b" evidence="3">
        <location>
            <begin position="52"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="126"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="18228" checksum="7374BC1C66649DCF" modified="2013-07-24" version="1">MKKLVYLALALCVMVAAFSGCGGQSDDGGNSSAVSSPPATVTPTPTPESQTAKALRVTADSGLNIRAEASTDGEILGLAENGQRLALMLEDPQNGWYQVQYNGQTAFVSADYAEVVEVTLEEYNQLRGTSSGTDTTSDTSAAATPTPAPDDTSSSGADSSSSTSSTSSSTNPVDAEDGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJY3</accession>
    <name>R6ZJY3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine-phosphate pyrophosphorylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01966</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30762">
        <property type="protein sequence ID" value="CDD30762"/>
        <property type="gene ID" value="BN815_01966"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP-TENI" evidence="1">
        <location>
            <begin position="5"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="21118" checksum="098978CA1898C691" modified="2013-07-24" version="1">MFKIVCVTARALCPGDFLAQLERVAAAGVDKIILREKDLPEPEYKLLAAQALALCRRYGVECAVHNFPQTANELGAPALHLPLPRLRALSPEERAAFPVLGASCHSLEDVREAAELGCSYGTLGHIFPTGCKPGLPPRGVELLAQVCQASPLPVYAIGGVGPGNIAQVKQAGAAGACVMSGFMTAPDPARLVGQLRKEAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKF8</accession>
    <name>R6ZKF8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative LPXTG-motif protein cell wall anchor domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30942">
        <property type="protein sequence ID" value="CDD30942"/>
        <property type="gene ID" value="BN815_02101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426734" evidence="1">
        <location>
            <begin position="30"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15373" checksum="15D17CB25D71E615" modified="2013-07-24" version="1">MKYRMTKRLLAALLCACLLVTSLPLQALAAVDVTKGNSAQENAQLLQQLEALTGGESEAAAALATMRDLGLVDENGNLLQTRTVTLDGQEMTLDQVRDYLETCKEEDLDKMVEVDGTQVTLENLATMMAIEAEIDRVREAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL80</accession>
    <name>R6ZL80_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="5">ATase</shortName>
            <ecNumber evidence="3 5">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02351</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = 5-phospho-alpha-D-ribose 1-diphosphate + H2O + L-glutamine</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="3 5"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31207">
        <property type="protein sequence ID" value="CDD31207"/>
        <property type="gene ID" value="BN815_02351"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13537">
        <property type="entry name" value="GATase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="8">
        <location>
            <begin position="1"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="345"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="381"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="460"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="463"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="468" mass="52312" checksum="6261CDC51D97290D" modified="2013-07-24" version="1">MGGFFGVASKEDCMFDLFFGTDYHSHLGTRRAGMAVYDPAKGFDRAIHNIENSPFRTKFDKDVASMKGHLGIGCISDYEPQPLIVRSHHGTYAIVTVGKINNTNEIVEQLFKSGHSHFLEMSGGDVNATELVASVINQKQNLIEGIQYAQEVIDGSMTMLIMTPKGILAARDKLGRTPVALGQKENAYCISFESFAYLNLGYTSLRELGPGEIAIVTPEGVKTLVEPGKDMKICTFLWVYYGYPSSSYEGVSVEQMRYHCGAMLARRDDAHPDTVAGVPDSGTAHAIGYANESGIPFSRPFIKYTPTWPRSFMPTMQSQRNLIAKMKLIPVHELIQDRSLLLIDDSIVRGTQLRETTEFLYQSGAREVHVRPACPPLLYGCKYLNFSRSTSVMDLITRRVIQEMEGTEEPANLVKYADPESGEYNAMVEYIGKKLNFTSLRYHRLDDMIQSVGIDKCKLCTYCWDGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLX4</accession>
    <name>R6ZLX4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytosine-specific methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00352</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31452">
        <property type="protein sequence ID" value="CDD31452"/>
        <property type="gene ID" value="BN815_00352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="356" mass="39472" checksum="2E389C3D8AD932CD" modified="2013-07-24" version="1">MGQSKVNEKNTPNEVLAIDLFCGCGGVTEGLKQAGFTVIAAVDNDPICCQTYRLNHPEVSLLEKDICKTSARSLKSILGKRKLDLLVVCAPCQPFSSLNKSKKPDERVYLILQSVRFTKALKPKYVLFENVPGITKNSAVINQLKSEFSKLGYNLSEPKQIDAADYGVPQRRVRCVIVASRKRVVDLPPPTTPTGHRITVRDAIGDLPVAGFVNPKDSLHVCRKHSKITIDRLQHISHDGGSRDELPVHLRLQCHKKLDDTGEATYYCDVYGRMRWDTVAPTLTTGCTDVTKGRYAHPVFDRAITLREAALLQTFPVDYRFYGNSGQIARQIGNAVPVNLAKNLALIFLSNKGDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMF3</accession>
    <name>R6ZMF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-coenzyme A synthetases/AMP-(Fatty) acid ligases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00426</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000438">
        <property type="protein sequence ID" value="CDD31632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31632">
        <property type="protein sequence ID" value="CDD31632"/>
        <property type="gene ID" value="BN815_00426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="40"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="466"/>
            <end position="544"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="556" mass="63180" checksum="0941DFC5879715AE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUE0</accession>
    <name>R6XUE0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00599</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000033">
        <property type="protein sequence ID" value="CDD27348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27348">
        <property type="protein sequence ID" value="CDD27348"/>
        <property type="gene ID" value="BN815_00599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="185"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="252"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="450" mass="50707" checksum="C7923E3D2C63B126" modified="2013-07-24" version="1">MSRNKVKREKTHKSILAQFFILLVGLGLLCGALFLVLHTTVGSALESYVYSSDFLSNVTEKRVNDLQEYVTENQVSATDSQALSQWMRGKPLTLMEIYRSNVLVYSSYASYSLAVEGGDFTWTVTEGEETPTYDWISYYTVDFADGEGEVVLYSNELYRYSTYATMAEIILCAALFLLGFLIAFQRTVSYMRQISLEIQAMEGGDLNRPITVRGDNDLTALAESLDAMRLAFRAQQEREASTYAANQALISQMSHDLRTPLTTLLIYTEILRYGKYQGEEQLRGYLDKIDGKAQQIKQLAENLLEYSLASQKRAVEMEPPAPAGEVFGPLLQETATFLEQYGYTFQWELRFGQGKVAVHTPYLRRILDNLSSNILKYAGRKEPIQVQAQEEENTLVLFFRNSLKEREDVTEGTCVGLSSVQAMMEKMGGSSHAEQTGAAFQITLVFPLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUQ8</accession>
    <name>R6XUQ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Riboflavin transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00637</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27463">
        <property type="protein sequence ID" value="CDD27463"/>
        <property type="gene ID" value="BN815_00637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032217">
        <property type="term" value="F:riboflavin transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024529">
        <property type="entry name" value="ECF_trnsprt_substrate-spec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025720">
        <property type="entry name" value="RibU"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38438">
        <property type="entry name" value="PTHR38438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12822">
        <property type="entry name" value="ECF_trnsprt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037778">
        <property type="entry name" value="UCP037778_transp_RibU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="46"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR037778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="21957" checksum="6C2590D9891F7F47" modified="2013-07-24" version="1">MQKKVNVRKIAMTAILSAVATVLMFISFSLPIIPSFIKLDFSELPALIAAFSMGPVSGVVVCFIKNLVNLTMSTTGGAGELCNFLMGVTFVVPAGLLYKFRKDRWGALWGSLLGAVIMAAMSFPINLYISYPAYTVAYGLTIPQILGMYQAINPAVETLAQALLWFNVPFTFFKAACDVAITFAVYKRISPLIHGQGKRLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV51</accession>
    <name>R6XV51_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Class II glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00665</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27598">
        <property type="protein sequence ID" value="CDD27598"/>
        <property type="gene ID" value="BN815_00665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012375">
        <property type="entry name" value="Glu_synth_lsu_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00310">
        <property type="entry name" value="GATase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018774">
        <property type="entry name" value="GOGAT_lg_dom1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="3">
        <location>
            <begin position="15"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="active site" description="For GATase activity" evidence="1">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR018774-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="370" mass="41604" checksum="FBAC1D2D3FD520AA" modified="2013-07-24" version="1">MLREGLDGARIPAGCAVSSIFSKSGQRRSGEDIIRSIALMHDRSNGLGGGFAAYGIYPEYKNLYALHVFYQGKQAKDVCEAFINEHFDVVNLSKIPTRKTPKIKDEPLIWRYFVEPLHTKLAESQLDEDTFVSRCVIRVNSQIDGAYIFSSGKDMGVFKAVGYPEDVGEFYRLEDYKGYCWTAHGRYPTNTPGWWGGAHPFALLDRSVVHNGEISSYDANRRAIEMYGYQCNLLTDTEVITYIIDFLVRRRGLSYEEAASVIAAPFWSTIGRMEEKEKARMTYLRAAFGGMLITGPFSILVGFTGGILALNDRLKLRSMVVGERGDTVYIASEESAIRAIEPELDTLYYPRGGEPVVYRVNQGALPEERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZI6</accession>
    <name>R6XZI6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transport permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01080</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-2 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000129">
        <property type="protein sequence ID" value="CDD29178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29178">
        <property type="protein sequence ID" value="CDD29178"/>
        <property type="gene ID" value="BN815_01080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013525">
        <property type="entry name" value="ABC_2_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01061">
        <property type="entry name" value="ABC2_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="228"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="ABC2_membrane" evidence="7">
        <location>
            <begin position="14"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="257" mass="29343" checksum="82F49DAEE5D77952" modified="2013-07-24" version="1">MEKREKARQYWFVVQQLTARELKRKYARSVLGVVWSVLNPLLSMAVLSLIFSQLFRRSIENYPIYYLTGYLLWQAFTATTNAAMTTLADNRALLLKVKFPMELFILTRGATALVNLGYSLVAYGVMLVVFQVPLRWTLAYLPVVVACLFLFALGISYLLSAAYVFFGDIKHLYSVALTLWMYCSAIFYPADQLSGFIRQVVEANPLYLYIRCLRGAVMEGLPPAGWELGLMAAWGVGVYLLGWGVFRRLREKLLLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZM7</accession>
    <name>R6XZM7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29223">
        <property type="protein sequence ID" value="CDD29223"/>
        <property type="gene ID" value="BN815_01095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="1">
        <location>
            <begin position="153"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="37252" checksum="D4EB468C66B6CD85" modified="2013-07-24" version="1">MKERAAFINVSQENKLSIAYDAPTRERLSAALDFLPGVLLEEELPARKEELREVAYLFSTWGMPALGKEQIRAYFPSLKAVFYAAGSVQGFAREYLEAGVQVFSAWAANAVPVAEFTVAQILLAGKGYFQGLRRQERAGRAAFDSYSNTFPCNYHVKVGILGAGMIGSRVLEMLKAYDLETLAYDPFASDEKLQALGAKRATLEEIFSQCQTISNHIANLPATQGMLTYGLFSRMKPNATFINTGRGAQVVEADLLRALQEEPGRTALLDVTWPEPPEEGSPLLTQENVFLSPHIAGSMHNEVARMGVYMEEEYQRLIQGQPTRYQVTLSMLETMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZV5</accession>
    <name>R6XZV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DNA protecting protein DprA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01121</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DprA/Smf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29303">
        <property type="protein sequence ID" value="CDD29303"/>
        <property type="gene ID" value="BN815_01121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009294">
        <property type="term" value="P:DNA-mediated transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003488">
        <property type="entry name" value="DprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041614">
        <property type="entry name" value="DprA_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43022">
        <property type="entry name" value="PTHR43022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02481">
        <property type="entry name" value="DNA_processg_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17782">
        <property type="entry name" value="DprA_WH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DprA_WH" evidence="3">
        <location>
            <begin position="321"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="DprA_WH" evidence="3">
        <location>
            <begin position="408"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="380"/>
            <end position="407"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="49081" checksum="69D25E81A282E83D" modified="2013-07-24" version="1">MDNRAYWIWMQQAFGAGSPLPWRIHRSVPGGVEAFYQGGPRLWNSLGGIREQEAAALFSFSLEEAQAQLEHALKVGWEVLTPACGEYPQALTHIYDPPAVLYGKGKLPDMDSRPALAVVGARKATPETQEKAREFGYQLALGGASVVTGGAVGVDAAVALGAMSGGGPVVSVLPVALNSPYLSKNHFLRQSILEKGGALLTEYFAQQTPGFGTFQVRNRLITGLACGVLLLQAARKSGTVMYASYAKDQNRDVFVWPGPQGDPAFAGGWDLLEDGAKAVECGEEILEELQYRFAGRGKIISLPAPRAWRAEEEAAIPVLADPGLPALSQAQAAVLAALTDTPQTMAQLEEAAGLPAGQLLGALTELELLGQAQSHQGKRYSRRFPALAGRQAPSARSSRSSPGGGPIHLTGEQAVVLTCLTKAPQPLEQLEKATGLPAGKVLEALQVLEGMGLARPCPGGGYCRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0R7</accession>
    <name>R6Y0R7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Toxin-antitoxin system antitoxin component PHD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29623">
        <property type="protein sequence ID" value="CDD29623"/>
        <property type="gene ID" value="BN815_01212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="9967" checksum="E07F46E73FD3E25E" modified="2013-07-24" version="1">MLRIFSIRHLENTTQITQMCKESKEPIFFTKNGDGDMLLMSMEAYEAKIMLLDVEAKLAQCSDEFRAGRVMDARKSLQKLRKKHGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y149</accession>
    <name>R6Y149_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative dihydroxyacetone kinase regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00644</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27525">
        <property type="protein sequence ID" value="CDD27525"/>
        <property type="gene ID" value="BN815_00644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039532">
        <property type="entry name" value="TetR_C_Firmicutes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14278">
        <property type="entry name" value="TetR_C_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="21538" checksum="A09AF83935ACB715" modified="2013-07-24" version="1">MSQVTKRALEQSLKNLLLKKPLTKITVGDITDDCGINRMTFYYHFKDIYDLVEWSCLEDAKMALEEKKTYDTWQQGLLQIFKAVQENKPFILNVYRCVHREQVEKYLQPLVDQLLLNVINEEAAGITVRDEDKQFIAQVYSYILIGLMLDWIKDDMREDPQQIVEKLSKLIKGSVSVALSRFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1D3</accession>
    <name>R6Y1D3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00676</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27625">
        <property type="protein sequence ID" value="CDD27625"/>
        <property type="gene ID" value="BN815_00676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009082">
        <property type="term" value="P:branched-chain amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="573" mass="61833" checksum="35878500BFA2D876" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1F5</accession>
    <name>R6Y1F5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FR47-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01292</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29903">
        <property type="protein sequence ID" value="CDD29903"/>
        <property type="gene ID" value="BN815_01292"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="122"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="27178" checksum="4C7412C42178CB91" modified="2013-07-24" version="1">MIRLVQGEGEKRRLLALCEKTPFGCKIASIANSYGFDKSFANFWLNTEEDVVYCLVDGAMLLSGTVLQGDASREFLHVVGAREVLCAVRNAEAMNLTPTQVGDVLKHTQEPGDLPKELPPSVNIREIYTLLEKAGMIGEFEPFYLDLSHKLRHNEALALTERGPEGLRACAVVSSISQRGAILSALAVREGMRRQGLGSRLVRRAESYFPGKMLYVFREQHKNKEFYKSLGFTKTDTWVHSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1N6</accession>
    <name>R6Y1N6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000185">
        <property type="protein sequence ID" value="CDD29978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29978">
        <property type="protein sequence ID" value="CDD29978"/>
        <property type="gene ID" value="BN815_01327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="119" mass="13898" checksum="F89B3B45E5B9C239" modified="2013-07-24" version="1">MLALSKEEATLTVTHGDLQTIRGDHVRRFRDRPMVIDWGFTQRAPLYIDLVDFFTRQESLLYWEALRRQGSVLSQASFLERWQAASVYPGFIYLYPALMQYLRGDDSRLEKLINLLLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2D4</accession>
    <name>R6Y2D4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">mRNA interferase</fullName>
            <ecNumber evidence="3">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01461</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Toxic component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the PemK/MazF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30218">
        <property type="protein sequence ID" value="CDD30218"/>
        <property type="gene ID" value="BN815_01461"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003477">
        <property type="entry name" value="PemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011067">
        <property type="entry name" value="Plasmid_toxin/cell-grow_inhib"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33988">
        <property type="entry name" value="PTHR33988"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02452">
        <property type="entry name" value="PemK_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033490">
        <property type="entry name" value="MazF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR033490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="12591" checksum="489933BD6AB46ED2" modified="2013-07-24" version="1">MIVHRGEIYYADLSPVVGSEQGGVRPVLIVQNDVGNKFSPTVIAAAITSQKDKANLPTHIAVNAQGSGLIKDSIILLEQVRTLDKHRLREKMGRLDAESMGRVDQALSISFGLRPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2F5</accession>
    <name>R6Y2F5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30238">
        <property type="protein sequence ID" value="CDD30238"/>
        <property type="gene ID" value="BN815_01481"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="22466" checksum="995942D9954DE73C" modified="2013-07-24" version="1">MRPGESLESLSREQLLELLSIYSKNWQAMDGVWFQSVEGKYGMEEAMYHDVEAWKRFTVTEARRIKKFLNLPEYPGLEGLEQALQFRFYANLSHYQLIRQGDTLLYRVLECRVQQARTRKNLGLHPCKPAGLAEYAGFAKTIDGRITCQCLSCCPEVTDPGCACAWLFRLKGENSPAATGEFAGLSGKHGENFRQNDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2R8</accession>
    <name>R6Y2R8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01572</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30338">
        <property type="protein sequence ID" value="CDD30338"/>
        <property type="gene ID" value="BN815_01572"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="213" mass="23154" checksum="BFDB1C69CA87A01B" modified="2013-07-24" version="1">MRTISPWMGRLLQGLSWKKLFWILLGAAIATFGIHNIHQQAGITEGGVIGAMLLAGHWLGFSPSVITPVLDVACYLLAWRYLGGMFIKISVLSTASVSLFYRLWEQFPYMLPDLSSQTLAAALLGGLFVGIGVGLIVRQGGSSGGDDALALVISKVAKCRLSFAYLFTDLTVLALSLSYIPLNRILFSVVTVTLSSFLIDQVQNFSLRRPEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y311</accession>
    <name>R6Y311_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xanthine/uracil/vitamin C permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00789</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000082">
        <property type="protein sequence ID" value="CDD28225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28225">
        <property type="protein sequence ID" value="CDD28225"/>
        <property type="gene ID" value="BN815_00789"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006042">
        <property type="entry name" value="Xan_ur_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01116">
        <property type="entry name" value="XANTH_URACIL_PERMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="136"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="203"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="245"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="342"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="367"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="408"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="431"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="48633" checksum="15443038C5A9F93A" modified="2013-07-24" version="1">MKQSNSAVGYLPEERPGFVKLLLYAIQQVIVMFPATVTVALVTGFQVSTTIFASGLATLCFILITGRKIPLYYGSSFAYLTAIASMCAAEGFEKVDGILPTEAIQYAQFGIIFSGLISIAAGLLVKFFGKKVVETILPASITGPVAMIIGLTLAGNALSDAIPAATEGATTETVAWTVVALVTLLSTILYARYLKGFLGQLPLLLGVLTGSVVAGIFFAAGTNLFREVPAAALDASLWKLGDGSIFAVPAFSLPKVSWTAVAAIMPIAIATIPESTAHMYQLDIYVNDVAKRKGSKKKYDLIGLLDRNLIGDGICDMISGVVGGPAGTNYGENISTMAITKVFSVPVLAVAAVIAMIVSFFTPLIRVIYGIPLAVIGGLEVYLFGAIAAQGIAIMIEKKVDMFSSKNIAVIASIMVIGIGGQYAFGGNIPFFGLQVPCIAGAAIFGIVLNLLLSIGEKKAKAEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y359</accession>
    <name>R6Y359_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Ion-translocating oxidoreductase complex subunit D</fullName>
            <ecNumber evidence="10">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Rnf electron transport complex subunit D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rnfD</name>
        <name evidence="11" type="ORF">BN815_00805</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the NqrB/RnfD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28285">
        <property type="protein sequence ID" value="CDD28285"/>
        <property type="gene ID" value="BN815_00805"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00462">
        <property type="entry name" value="RsxD_RnfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004338">
        <property type="entry name" value="NqrB/RnfD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011303">
        <property type="entry name" value="RnfD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578">
        <property type="entry name" value="PTHR30578"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30578:SF0">
        <property type="entry name" value="PTHR30578:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03116">
        <property type="entry name" value="NQR2_RnfD_RnfE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01946">
        <property type="entry name" value="rnfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 10" id="KW-0288">FMN</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 10" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="255"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="modified residue" description="FMN phosphoryl threonine" evidence="10">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="324" mass="34509" checksum="EE110B21B43E649E" modified="2013-07-24" version="1">MEKLIVSSSPHFNGGRTTQNIMLDVIIALVPAMVASVILFGFRAAVVILTCVATCVLSEYLCRRVMKRPQTVGDLSCVVTGILLALNLPVTINPLIAVFGGVVAIVVVKQMFGGIGQNFVNPALTARIILLNSFPSRMTHWVQPFDYTATADAITTATPLGILKEGAGEALPSYLDLFLGNNAGCLGETCALAILIGGAYLIARRVISPVIPVTYLATAALFSALFGRDPLFDLLSGGLLLGAFFMATDYTTSPLYFWGRVVFAFGCGLITMVIREFGSLPEGVSYSIILMNILTPLLERAIKPRAFGSQRAPKGKKGGARDEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3J1</accession>
    <name>R6Y3J1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01746</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30533">
        <property type="protein sequence ID" value="CDD30533"/>
        <property type="gene ID" value="BN815_01746"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023975">
        <property type="entry name" value="Six-Cys_pep_SCIFF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13165">
        <property type="entry name" value="SCIFF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03973">
        <property type="entry name" value="six_Cys_in_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="48" mass="5193" checksum="C5A545630A125707" modified="2013-07-24" version="1">MERIKTLETRDMCESAKNGGCGECQTSCQSACKTSCGVANQKCENTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3L6</accession>
    <name>R6Y3L6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01776</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30563">
        <property type="protein sequence ID" value="CDD30563"/>
        <property type="gene ID" value="BN815_01776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="167"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="212"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="272"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="505"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="539" mass="59502" checksum="E7E8A0D32323AB12" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3R5</accession>
    <name>R6Y3R5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01834</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000286">
        <property type="protein sequence ID" value="CDD30623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30623">
        <property type="protein sequence ID" value="CDD30623"/>
        <property type="gene ID" value="BN815_01834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="8840" checksum="2F4BB400D8919799" modified="2013-07-24" version="1">MTPNENQLEALLKLAAQRMGTTPQALKDAAQRGDLSHLAGNASGQDAANLRKVLSDPEAAKKLLSTPQAQKLLQLLGSQGKPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3U0</accession>
    <name>R6Y3U0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphocarrier protein HPr</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01855</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to the phosphoryl carrier protein HPr by enzyme I. Phospho-HPr then transfers it to the PTS EIIA domain.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30648">
        <property type="protein sequence ID" value="CDD30648"/>
        <property type="gene ID" value="BN815_01855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001020">
        <property type="entry name" value="PTS_HPr_His_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002114">
        <property type="entry name" value="PTS_HPr_Ser_P_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00369">
        <property type="entry name" value="PTS_HPR_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00589">
        <property type="entry name" value="PTS_HPR_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="domain" description="HPr" evidence="7">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00020422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9426" checksum="7B80F5976AB16999" modified="2013-07-24" version="1">MCAKEVLVQNQVGLHARPATFFIQKANEFKSSIWVEKEERRVNAKSLLGVLSLGIVGGVTIRIIADGADEEQAVDALVELVNSGFAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4B6</accession>
    <name>R6Y4B6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2268 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00073</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28705">
        <property type="protein sequence ID" value="CDD28705"/>
        <property type="gene ID" value="BN815_00073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018728">
        <property type="entry name" value="DUF2268"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10026">
        <property type="entry name" value="DUF2268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2268" evidence="1">
        <location>
            <begin position="87"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="34354" checksum="375CB0AF317E20EC" modified="2013-07-24" version="1">MKLSYVRSDAVYKKIMEAPVEKKNDIYRYELMMPFKGKWDCYQIPMKAATPNGYDIIMASDMLGLISPTKVDQSQKANIESLSSDWLWDSCEQSIRKSLECFLNNGIELPVSEYLFTVLLANAESPYISLNEGYCGDGGIPGYIMAWLIPNEFTLTRLPVALAHEVNHNVRFQFIKWRNSITLGEMMVSEGLAENFATHLYGEDKAGPWVTKTDMQTLNEYIKPIIHDGLNVQGLENLNAYLYGDEMAAMQNYPCVGLPYCAGYACGYHLVKHYLKKTGKSIIEATLLPASEILETVEDFWNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4F3</accession>
    <name>R6Y4F3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30843">
        <property type="protein sequence ID" value="CDD30843"/>
        <property type="gene ID" value="BN815_02030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="11816" checksum="603685707096F3B1" modified="2013-07-24" version="1">MAARPGDFTQAGTQRLLPGAGVRGLVLEDGEGGLKVLLGRLLGITQAEAARELDQLLPAHLAWAWDTAVTWVALDAYPRSFEAWDDLGLTWAQLDGVSRQDLENGFEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4J3</accession>
    <name>R6Y4J3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00957</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28785">
        <property type="protein sequence ID" value="CDD28785"/>
        <property type="gene ID" value="BN815_00957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="domain" description="DUF58" evidence="2">
        <location>
            <begin position="203"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="392" mass="42902" checksum="9715D05EC5757F85" modified="2013-07-24" version="1">MWKSRLCYLLVLLCTSVFFICYNGYISLYVFVLSLLFPVFAFLLSLPGILGLRVELLAGREGPGASLTGTSCARKGEAIPLQLAVWNATPFSSGRVQARLTVVNTFTGQREEERFSFTAGPRRQVFQHQLSSRTCGRVVCQVDRLWACDYLGLFALPVRRPRGLSATFWPTVYPLELEVRESSIPDSEGERYSQKKPGDDPTELFALRDYREGDRLSRIHWKLSQKMGRTLVKELGLPLSDHLLFLLDLNGGGLEADLLLDALASLSSALTEGEHAHRVAFWDGAAQKLQCREVTQPEDLLPLWQEVLAAGSGSPLPLGQEGALPAGLSHVLYVCCQPQGPVLLALGDKYPSAQLTVLQGGSASKEAPLPAGARRILLTPGQVAQNLNGLTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4K7</accession>
    <name>R6Y4K7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00186</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30883">
        <property type="protein sequence ID" value="CDD30883"/>
        <property type="gene ID" value="BN815_00186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425230" evidence="1">
        <location>
            <begin position="31"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="158" mass="17380" checksum="6F60251D214B046E" modified="2013-07-24" version="1">MKKKIFAGILALAAVLALVCIIFAQGGSGAYVPAADEIALRIQFDTKEDVGLLVYDYRAEGRDYSGGISNADGSLLPGDSENMVVWNREELESTADALALWIRFRVITEYVTPNFENVYPEDITKALEPIAWEARFGQTYTIAITGDRTNGYQAVLHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4M8</accession>
    <name>R6Y4M8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30898">
        <property type="protein sequence ID" value="CDD30898"/>
        <property type="gene ID" value="BN815_02060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="528" mass="52060" checksum="68F970ADF66003B3" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5B4</accession>
    <name>R6Y5B4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6 7">50S ribosomal protein L19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rplS</name>
        <name evidence="8" type="ORF">BN815_02277</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6 7">This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the bacterial ribosomal protein bL19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31133">
        <property type="protein sequence ID" value="CDD31133"/>
        <property type="gene ID" value="BN815_02277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00402">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038657">
        <property type="entry name" value="L19_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001857">
        <property type="entry name" value="Ribosomal_L19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018257">
        <property type="entry name" value="Ribosomal_L19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15680">
        <property type="entry name" value="PTHR15680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01245">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002191">
        <property type="entry name" value="Ribosomal_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00061">
        <property type="entry name" value="RIBOSOMALL19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01024">
        <property type="entry name" value="rplS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01015">
        <property type="entry name" value="RIBOSOMAL_L19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 8" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="12868" checksum="8DD6FCE8D0D7A374" modified="2013-07-24" version="1">MDAIKAISQDSLKAEVPQFSIGDTIRVDVNIREGDRERIQQFEGTVIARKGSGISETFTVRRVSYGVGVERVFPLHSPNVKAVKVVRQGRVRRAKLYYLRNRVGKAAKVKEQLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5D7</accession>
    <name>R6Y5D7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01051</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29075">
        <property type="protein sequence ID" value="CDD29075"/>
        <property type="gene ID" value="BN815_01051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8130" checksum="4A1C635611ACA802" modified="2013-07-24" version="1">MIVTATEFKTNLGKYLEMATKQDIFITKNGKSIARLTSPTVNKLAVLDSLVGIVSEDSAMDEETIRKERLARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5L9</accession>
    <name>R6Y5L9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02382</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31238">
        <property type="protein sequence ID" value="CDD31238"/>
        <property type="gene ID" value="BN815_02382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008756">
        <property type="entry name" value="Peptidase_M56"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05569">
        <property type="entry name" value="Peptidase_M56"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="296"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M56" evidence="2">
        <location>
            <begin position="86"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="380" mass="43236" checksum="6EA01C7C1B4D3F68" modified="2013-07-24" version="1">MSITPYSLFTAVLWSSAFILLLYFFRKNTRLLALTGVTPLLFLILGTALRCLFPIEFLHFTNVVGLEGLVAGLFRALRAPLGQLPLQVWEVLLLVWAAGSLGLAARTGLGAWKFHKKLRSYEPLEDSRIERLAQQAARELDVPAPLLIQTLRADTPVIAGLLRPVILLPCYHYTDEEYRYVFLHELCHWKNHDMWVKLFVEVFCILFWWNPLVYLLKKDLARALELKCDGAVLKHAGMQAALDYQEVLVKTLVSSHKQKNKGFSSYRVTELVSSQKEDILQRVELILQARQRHRKVAPLALAGIMALLLVCSYSVVVQPAYYPSMEEITEGQYTPVTTWNSWLARESDGDYILYCKGEEPIPVSDKTAGIMLDQGFPLRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Q6</accession>
    <name>R6Y5Q6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Oxidored_FMN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29220">
        <property type="protein sequence ID" value="CDD29220"/>
        <property type="gene ID" value="BN815_01093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="34"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="439" mass="47898" checksum="85C26DDBC3C9C326" modified="2013-07-24" version="1">MFHYQTVEELRQAAQEEGVTLPLGGDLSPLGQELEVQGVKLPNRVAIQPMEGCDGTADGKPGELTLRRYDKFARSGAGLLWEEATAVWEEARANPRQLWINEENVGAFQAMNQRIRELSQKENGFAPVIIMQATHSGRYSKPQGVPAPLIAYNNPLFEKDGPIPQERIVSDDYLHRLVERMGEAARLAQRAGFDGIDLKSCHRYLGSELLSAYNRPGDFGGSFENRTRFLRESVQAAKAAVTGDFLITSRLNVYDGFPYPYGFGVSTKGGLEPDLTEPLKLVGILHQELGMGLLDVTIGNPYVNPHVNRPADAQPYPLPESPLVGLGRMLACVKAIQQAYPSLAVVGSGLSYPRQFAGQLAAGALEQGFFQLAGFGRMAFAYPSFAKDMLSGKGLDPKQCCVACGKCSQLMRLGSMAGCVVRDSVYTALYREAQQKATS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y631</accession>
    <name>R6Y631_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01131</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000143">
        <property type="protein sequence ID" value="CDD29355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29355">
        <property type="protein sequence ID" value="CDD29355"/>
        <property type="gene ID" value="BN815_01131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="178"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="240" mass="23894" checksum="9C2A8F797EB7AFD9" modified="2013-07-24" version="1">MGLPVGPGRAAGLVFAHLRSVLSGRAAPGGLWLRQQPAAHPVCARVHFQRAAALRQPGHGCHDSPARPGLPAGGGAGVCAPLHGLGPPDFFPGHPGEPTGLGQKLPPGGPLERQGLCRAGRLAAVAGPVHQGGPVLAAQPPGPGGFRRRLLPQPPLFRGLPHRLCLLGGACRAGHGGHGPVHPGAAGRGRPREAAAGVAQPHLAGGRRRPGRGAPQAAGKAPPLGAGSVEALGLFLGSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y647</accession>
    <name>R6Y647_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_hyd_65N_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000144">
        <property type="protein sequence ID" value="CDD29370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29370">
        <property type="protein sequence ID" value="CDD29370"/>
        <property type="gene ID" value="BN815_01136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004560">
        <property type="term" value="F:alpha-L-fucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016518">
        <property type="entry name" value="Alpha-L-fucosidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027414">
        <property type="entry name" value="GH95_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14498">
        <property type="entry name" value="Glyco_hyd_65N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007663">
        <property type="entry name" value="UCP007663"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hyd_65N_2" evidence="1">
        <location>
            <begin position="4"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="782" mass="87411" checksum="BD37261F3CEB536F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6C5</accession>
    <name>R6Y6C5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">30S ribosomal protein S10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsJ</name>
        <name evidence="6" type="ORF">BN815_00364</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31483">
        <property type="protein sequence ID" value="CDD31483"/>
        <property type="gene ID" value="BN815_00364"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018268">
        <property type="entry name" value="Ribosomal_S10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_S10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_S10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="PTHR11700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="SSF54999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01049">
        <property type="entry name" value="rpsJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00361">
        <property type="entry name" value="RIBOSOMAL_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_S10" evidence="5">
        <location>
            <begin position="8"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11712" checksum="ACF9EBB6D0824774" modified="2013-07-24" version="1">MAVKEKIRIRIKGYDHQLVDQSAEKIVATAKRTGARVSGPVPLPTEKQIITILRAVHKYKDSREQFEMRTHKRLIDILRPSNKTVEALMGLELPAGVEIEIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6D5</accession>
    <name>R6Y6D5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase IV 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29450">
        <property type="protein sequence ID" value="CDD29450"/>
        <property type="gene ID" value="BN815_01159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036775">
        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IMS_C" evidence="1">
        <location>
            <begin position="2"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="15003" checksum="D584F5833D8B415A" modified="2013-07-24" version="1">MLLELAESVASRLRRQGMKAGEVQLTVKNGEFQEYQRQCRLEPAVCDARSLYKAALELYRREDRRWAVRLLGLRAGKLVEAGAAQMSFFANTRDLEREERLETAVDALRERFGGGSVRRGTVLEKKEREGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6Z8</accession>
    <name>R6Y6Z8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MdsC protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29650">
        <property type="protein sequence ID" value="CDD29650"/>
        <property type="gene ID" value="BN815_00097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="24"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="362" mass="40204" checksum="D768896475EBF620" modified="2013-07-24" version="1">MEHPIQITPEILEAFGLPRDCASTRLHGGHINDTFLVENGGKYVIQHINRYVFPSPQDIMENITGVTEFLREKILARGGDPLRETLNIRRTTQGGTLFVDEEGGPWRCMTFVDKATSHETVESPAMLREAGRAFGEFQSLLSSYPASTLHETIKDFHNTPERYRQLLEAAQNDKAGRLSQVGAEMDFAAQRKEACALLMDLLREGKLPLRVTHNDTKMSNILIDDATGKAICVIDLDTVMPGLCAFDFGDSIRAGATTAAEDEADLSKVHFDLGLFEAYADGFLSAAGSALTPLELKTLPDGARLMTLEVGLRFLADYLNGDVYFRTAYPEHNLVRARNQFKLVQEMEEKRAGMDAVIAKYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y772</accession>
    <name>R6Y772_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00521</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000017">
        <property type="protein sequence ID" value="CDD27149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27149">
        <property type="protein sequence ID" value="CDD27149"/>
        <property type="gene ID" value="BN815_00521"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10722" checksum="ACA17D5943D562FA" modified="2013-07-24" version="1">MERTVLRILGKKGRTTIPWPIRAELDFCPGDVLLFESDPPDRVVITRLEVYEPEEVEEPDLTGDIFTEEFHRLPLSQQYRLLASLLADFHLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7G8</accession>
    <name>R6Y7G8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27244">
        <property type="protein sequence ID" value="CDD27244"/>
        <property type="gene ID" value="BN815_00553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018658">
        <property type="entry name" value="DUF2089"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09862">
        <property type="entry name" value="DUF2089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="11193" checksum="6C33CE6AD6A75EF8" modified="2013-07-24" version="1">MGIQVVPEWMAELEEEDVAFLKNFLLCSGSLKEIAGLYGVTYPTVRLRLDKIIQKVRLGEEYAGDPYVALIKRLALNEKLDFDTAKLLITEYKKLKGGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y841</accession>
    <name>R6Y841_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 9">Cytidine deaminase</fullName>
            <ecNumber evidence="6 9">3.5.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Cytidine aminohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00638</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 9">This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 9">
            <text>2'-deoxycytidine + H(+) + H2O = 2'-deoxyuridine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13433"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15698"/>
            <dbReference type="ChEBI" id="CHEBI:16450"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>cytidine + H(+) + H2O = NH4(+) + uridine</text>
            <dbReference type="Rhea" id="RHEA:16069"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.5" evidence="6 9"/>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27464">
        <property type="protein sequence ID" value="CDD27464"/>
        <property type="gene ID" value="BN815_00638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004126">
        <property type="term" value="F:cytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047844">
        <property type="term" value="F:deoxycytidine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006262">
        <property type="entry name" value="Cyt_deam_tetra"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01354">
        <property type="entry name" value="cyt_deam_tetra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="10">
        <location>
            <begin position="7"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD27464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15055" checksum="3E589791002AC367" modified="2013-07-24" version="1">MKEQREMIRLALVQRAKEARKKAYCPYSGFAVGAALLCADGSVYDGCNIENAGFTATCCAERTAFFRAVNDGKRDFKAIAIAGGRAGEEPTGICAPCGVCRQVMAEFCGPGFEILLTDGHSLQVQTLEELLPLAFGPGNLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y888</accession>
    <name>R6Y888_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Redox-sensing transcriptional repressor Rex</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rex</name>
        <name evidence="9" type="ORF">BN815_01388</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transcriptional regulatory Rex family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30135">
        <property type="protein sequence ID" value="CDD30135"/>
        <property type="gene ID" value="BN815_01388"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051775">
        <property type="term" value="P:response to redox state"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01131">
        <property type="entry name" value="Rex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009718">
        <property type="entry name" value="Rex_DNA-bd_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022876">
        <property type="entry name" value="Tscrpt_rep_Rex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35786">
        <property type="entry name" value="PTHR35786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06971">
        <property type="entry name" value="Put_DNA-bind_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0678">Repressor</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="CoA_binding" evidence="8">
        <location>
            <begin position="81"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="92"/>
            <end position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01131"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="23536" checksum="5546238B06E0CCD1" modified="2013-07-24" version="1">MREVPSQGVSKQTLQRLPVYLSYLKGLREAPKYISATAIAEALNMNHVVVRKDLASISSSGRPKVGYVREDLIYELEGFLGYDNTQDAVLVGTGQLGKALLAYDGFVEYGLNILAGFDTDPFTVNTEVGGKMILPMDRLEDLCQRMKVRIGILTVPGEHAQAVCNLLIKSGILAVWNFSNVHLDVPEGILVQNENMAVSLAILSNHLKERFSTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8B1</accession>
    <name>R6Y8B1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aspartate carbamoyltransferase regulatory chain</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01410</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in allosteric regulation of aspartate carbamoyltransferase.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PyrI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30165">
        <property type="protein sequence ID" value="CDD30165"/>
        <property type="gene ID" value="BN815_01410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009347">
        <property type="term" value="C:aspartate carbamoyltransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020545">
        <property type="entry name" value="Asp_carbamoyltransf_reg_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002801">
        <property type="entry name" value="Asp_carbamoylTrfase_reg"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020542">
        <property type="entry name" value="Asp_carbamoyltrfase_reg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036792">
        <property type="entry name" value="Asp_carbatrfase_reg_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036793">
        <property type="entry name" value="Asp_carbatrfase_reg_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35805">
        <property type="entry name" value="PTHR35805"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01948">
        <property type="entry name" value="PyrI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02748">
        <property type="entry name" value="PyrI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54893">
        <property type="entry name" value="SSF54893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57825">
        <property type="entry name" value="SSF57825"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PyrI" evidence="7">
        <location>
            <begin position="2"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="PyrI_C" evidence="8">
        <location>
            <begin position="96"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15747" checksum="8DBC22FD0FC42B8D" modified="2013-07-24" version="1">MLNIDSIENGIVIDHITAGLGMRIYELLELDKLDTCVAIIKNAKSEKYGKKDIIKIEGVMNIDLDVLGFIDDNATVCTIVNGKLQSKKKPPLPQRLVNIVSCKNPRCITSVEDVDQVFTLCDEKAHRYRCIYCEQEYKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8E2</accession>
    <name>R6Y8E2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01438</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30195">
        <property type="protein sequence ID" value="CDD30195"/>
        <property type="gene ID" value="BN815_01438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="19510" checksum="D353EFFD6CA710F2" modified="2013-07-24" version="1">MSVFFLADTHFGDGNILHYENRPFATVEEMDRELIRRWNEKVGAGDTVFHLGDFSARGEEEDRGILSQLAGEKVLVLGNHDRHRTPAQWRSLGFAEAVPWPLVWEGFFLLSHEPLYVNRNMPYANVFGHVHGNPAYRDASSRSVCVSVERTGFAPLSARELRERLQNEQSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8M9</accession>
    <name>R6Y8M9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01519</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000216">
        <property type="protein sequence ID" value="CDD30285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30285">
        <property type="protein sequence ID" value="CDD30285"/>
        <property type="gene ID" value="BN815_01519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="13713" checksum="24E921DC88C96FC2" modified="2013-07-24" version="1">MVALGLVNLALSLWRRDFTLSTGVLVGALLLLGVSSLLRSLSPQLSRQDKIEEQDERNILVNLKTRTSAFRWTRLVSFGLMALLLVAGAVTGEELLLAIAVGLAFSLTISFFAEFFSALYHESKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8N3</accession>
    <name>R6Y8N3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01524</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30290">
        <property type="protein sequence ID" value="CDD30290"/>
        <property type="gene ID" value="BN815_01524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="Transgly" evidence="10">
        <location>
            <begin position="103"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="9">
        <location>
            <begin position="405"/>
            <end position="651"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="751"/>
            <end position="862"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="8"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="762"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="800"/>
            <end position="814"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="815"/>
            <end position="837"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="838"/>
            <end position="862"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="862" mass="93676" checksum="5058D5D3DB47F82E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Y8</accession>
    <name>R6Y8Y8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01606</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30385">
        <property type="protein sequence ID" value="CDD30385"/>
        <property type="gene ID" value="BN815_01606"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008982">
        <property type="term" value="F:protein-N(PI)-phosphohistidine-sugar phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003352">
        <property type="entry name" value="PTS_EIIC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13303">
        <property type="entry name" value="PTS_EIIC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="PTS_EIIC" evidence="9">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="12829" checksum="1A4385C1118FC9A9" modified="2013-07-24" version="1">MAQGLGTSMLQVPNIIKNPRIWIAPTLASAITGPLATCVFRLEMNGAPVSSGMGTCGLVGQIGVIDGWVNDVANGLKAAITPMDWVGLALLCFVLPAVLSWVINLGLRKLGWVKDGDMKLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y943</accession>
    <name>R6Y943_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RNA methylase PF01170 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00720</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000063">
        <property type="protein sequence ID" value="CDD27814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27814">
        <property type="protein sequence ID" value="CDD27814"/>
        <property type="gene ID" value="BN815_00720"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="130" mass="14270" checksum="256352864C145C53" modified="2013-07-24" version="1">MKGNMRFCVPCLFGVEGLVAQELRDMGLEQVQAENGRVLFSGGWEAMARANLCCRFGERVLLLLGEFPARSFEELFQGVKALPWEGLLGKEDAFPVTGSSLSSPLHSVPGCQAIIKNRCRTARPSSKRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9L8</accession>
    <name>R6Y9L8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30590">
        <property type="protein sequence ID" value="CDD30590"/>
        <property type="gene ID" value="BN815_01801"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="20498" checksum="B3986475DF42F903" modified="2013-07-24" version="1">MNEMNEIGPRLRELREASDYTVERLAAELKVDPDVYRGYEQDGKDIPISLIYEVANKFGVDFAEILTGTPARLDTYHIVRRGHGRVVNRNPEYHFEDLAYRYADKVMQPLLVTLEPTDKPAGLITHAGQEFNLVLEGTVIVCIGDREFTLTAGDSIYFNPTIPHGQRCGGDVKARFVTVIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9S7</accession>
    <name>R6Y9S7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase</fullName>
            <ecNumber evidence="10">2.4.1.227</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">murG</name>
        <name evidence="13" type="ORF">BN815_01867</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1-&gt;4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:31227"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="ChEBI" id="CHEBI:61388"/>
            <dbReference type="EC" id="2.4.1.227"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
            <orientation evidence="10">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the glycosyltransferase 28 family. MurG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.227" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000295">
        <property type="protein sequence ID" value="CDD30660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30660">
        <property type="protein sequence ID" value="CDD30660"/>
        <property type="gene ID" value="BN815_01867"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051991">
        <property type="term" value="F:UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050511">
        <property type="term" value="F:undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030259">
        <property type="term" value="P:lipid glycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00033">
        <property type="entry name" value="MurG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006009">
        <property type="entry name" value="GlcNAc_MurG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004276">
        <property type="entry name" value="GlycoTrans_28_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03033">
        <property type="entry name" value="Glyco_transf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01133">
        <property type="entry name" value="murG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 10" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 10" id="KW-0133">Cell shape</keyword>
    <keyword evidence="9 10" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="3 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 13" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_transf_28" evidence="11">
        <location>
            <begin position="3"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_tran_28_C" evidence="12">
        <location>
            <begin position="193"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="region of interest" description="UDP-N-acetyl-alpha-D-glucosamine binding" evidence="10">
        <location>
            <begin position="10"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF03033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="40107" checksum="2920FE530C231026" modified="2013-07-24" version="1">MKVLFTGGGTAGHINPALAAAGYLLQKEPDAQILYVGNKGGMEERLVAQAGYDMKTVHISGFQRKLTPKNLWRNAQTVVRVFTATVEAKRIIQEFGPDVCVGTGGYVCGPVLREAAKLGIPCVIHESNAYPGVTTKMLAKSVKAVMLAVPDAKQYFDSSVNCVVTGNPVRGEVLTAQREESRKALGLDERPVVLSFGGSLGASALNRAAAYMLAQSAKTGEYQHIHGYGSHDEKFLDECREFGLDVEKNPQIRLLEYIDNMPQCLSAADLVIGRAGAMTLTEIEAKAKASILIPSPNVAENHQFHNAMALVRRGAAEIIEEKDLTGEALWEKVQAILSDPGRLQSLGENAGKMEVLDASDRIYRVIKSAAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA16</accession>
    <name>R6YA16_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01959</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30755">
        <property type="protein sequence ID" value="CDD30755"/>
        <property type="gene ID" value="BN815_01959"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018770">
        <property type="entry name" value="ChloroindolylP_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10112">
        <property type="entry name" value="Halogen_Hydrol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="23469" checksum="50E88C7153325A38" modified="2013-07-24" version="1">MREWKRVLFAAISAAGLFLLLFLALKWHPLVALALSVGLYGGVYLLLAPKAKEQTLRMTYGVDEEEYQVVLGEARKDLAVLAQAEETMDSPQDREQVRRLWTTGRSLVSYLEKEPGKLPQARQFFLYYLDTAAHLMERYQAFQKAGVRSPEVVDLLQRTEQALPLLNQAFEKQYDQLLAGELMDTQVEIDVLKAALGPELLPKEGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAB7</accession>
    <name>R6YAB7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ferrichrome transport ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00173</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30870">
        <property type="protein sequence ID" value="CDD30870"/>
        <property type="gene ID" value="BN815_00173"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="2"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="27828" checksum="AC053E4307F80791" modified="2013-07-24" version="1">MIELCHVTAGYPGRPVLEDVNLTFQAGNITALIGPNGCGKTTLLRAACGLLPLTGGQVLYGGKDLRRFGRKEFARLVSILPQTRDVPSIRAEQLVAHGRYPHLSFGRDLTQADREKIAWAMEVTGTTALKDKELSQLSGGERQRVYLAMTLSQDTDILFLDEPTTYLDIGQKYEMLELIAQVNVMGKTVVMVLHDLPLAFSYSHQVVVLEKGRLAAQGPADQVFASGVPARVFGVKSQALEVDGRQEYFFYQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBC4</accession>
    <name>R6YBC4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00860</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28514">
        <property type="protein sequence ID" value="CDD28514"/>
        <property type="gene ID" value="BN815_00860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007169">
        <property type="entry name" value="RemA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04025">
        <property type="entry name" value="DUF370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9799" checksum="E3DEAB52AEDC36CD" modified="2013-07-24" version="1">MYLHLGQDTIVNERDIVGVFDLDNSTVSRHTRDFLSKAQKEGRVVNVSMELPKSFVVCRRDGRTTVYISQISTATLLRRASSLVGGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBH3</accession>
    <name>R6YBH3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00213</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31275">
        <property type="protein sequence ID" value="CDD31275"/>
        <property type="gene ID" value="BN815_00213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="14"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="20636" checksum="63B4533B9C40FFBD" modified="2013-07-24" version="1">MALITSCQATFQNFSGYEDDLASLEENIRECYSEITKTSEQINMSVREEFISRSEMETIQKDFETSITQSSTEIRMDFTTITDEIKENVSTNQLLLEEYIRFKGALIELGKVGNAFTAELSNEELAFKENGQKIAYISNQSLVITNAEIRNKLSLGNESRGWFDFIPRTNGNLSIKWRGPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBQ5</accession>
    <name>R6YBQ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00072</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28704">
        <property type="protein sequence ID" value="CDD28704"/>
        <property type="gene ID" value="BN815_00072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="23560" checksum="2801641E69D86874" modified="2013-07-24" version="1">MGTLELQNLTYSYDKKKKVLRGIDARMEAGKMYAILGPSGCGKTTLLSLLGGLDSPTSGAILFEGKDVAQTGLAGHRKKNVSFIFQSYNLIDYMTPQENVRLISKKPAFPFLERLGLTKEETRRNVLKLSGGQQQRVAIARALASEAPVILADEPTGNLDEETAQDITEILKESAHQMNKCVVVVTHSNELAKQADVVFRLKKGELHIEQSGKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBX8</accession>
    <name>R6YBX8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00339</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31420">
        <property type="protein sequence ID" value="CDD31420"/>
        <property type="gene ID" value="BN815_00339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="64" mass="7732" checksum="EB417187F846D030" modified="2013-07-24" version="1">MIPCQATCGSYCEGCHKNCAKWKVLQAKNRRERQKKKDYLHYYNQLNSAVLRQYLSMQPHSYYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC14</accession>
    <name>R6YC14_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00971</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28829">
        <property type="protein sequence ID" value="CDD28829"/>
        <property type="gene ID" value="BN815_00971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="26"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="30543" checksum="BAF84C712B028E00" modified="2013-07-24" version="1">MKTLPVAVQVYSVREDAEKDFAGTMKKIKEIGYDGVELAGLYGLEPAAIKAAIEDAGLVALSAHVPFQELVADMEGTIQKYVEIGMKYIAIPYLMEEDRPGTPKFEGNVKLFEEIAKACKAKGIQLLYHNHDFEFQKMADGRYALDYIYDTIPADLLQTEVDTCWVKVAGEDPAAYVKKYTGRSPLVHLKDFHKEGRPANMYQLIGTEVEEQESHGTFEFRPVGHGDQDFGPILEASVEAGAQWVVVEQDQSNGRTPMEAITLSRQYLKEQGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCB9</accession>
    <name>R6YCB9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">30S ribosomal protein S13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsM</name>
        <name evidence="9" type="ORF">BN815_00391</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31515">
        <property type="protein sequence ID" value="CDD31515"/>
        <property type="gene ID" value="BN815_00391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_S13_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="30s_Rbsml_prot_S13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_S13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019980">
        <property type="entry name" value="Ribosomal_S13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_S13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF1">
        <property type="entry name" value="PTHR10871:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03631">
        <property type="entry name" value="uS13_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="97"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="13834" checksum="3822DEC45B916215" modified="2013-07-24" version="1">MARISGIDLPRDKRIEIALTYIYGIGRKTATNICAATGVDPDIRVRDLSEDDTAKLRDYIDKNCHVEGDLRRDVAFDIKRLIEIGCYRGVRHRKGLPVRGQRTKTNARTRKGPVKTVANKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCX6</accession>
    <name>R6YCX6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal silencing factor RsfS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsfS</name>
        <name evidence="3" type="ORF">BN815_00459</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with ribosomal protein L14 (rplN).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Iojap/RsfS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31755">
        <property type="protein sequence ID" value="CDD31755"/>
        <property type="gene ID" value="BN815_00459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:mature ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090071">
        <property type="term" value="P:negative regulation of ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01477">
        <property type="entry name" value="Iojap_RsfS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004394">
        <property type="entry name" value="Iojap/RsfS/C7orf30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21043">
        <property type="entry name" value="PTHR21043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00090">
        <property type="entry name" value="rsfS_iojap_ybeB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13239" checksum="D498D2C1D5A66DE4" modified="2013-07-24" version="1">MTSLELAKKAAAFLDNKKAERVHVIEIENISSLADYFVIATGNNNTHVRALADELEEKLKGEGLPPARVEGYRSNSWILLDWGNVVIHIFTQEGRDFYDLDHLWADGKNVEWSPSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD54</accession>
    <name>R6YD54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000133">
        <property type="protein sequence ID" value="CDD29209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29209">
        <property type="protein sequence ID" value="CDD29209"/>
        <property type="gene ID" value="BN815_01088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="10475" checksum="0724A1E8BE302E46" modified="2013-07-24" version="1">MGSITGSSLEDPPDSLSPPQGSSEEVGSLCEGPSEELGSWEEEDSLSDGSLCEGSCEEEELGGTVGSWEEELGGSWLLGGAADSPGSGMGRGSVTEPVPSPGISV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF61</accession>
    <name>R6YF61_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Septum formation initiator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00547</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27236">
        <property type="protein sequence ID" value="CDD27236"/>
        <property type="gene ID" value="BN815_00547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007060">
        <property type="entry name" value="FtsL/DivIC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04977">
        <property type="entry name" value="DivIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="30"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="100" mass="11123" checksum="C719CDFD9EDCD0DD" modified="2013-07-24" version="1">MRELKIEKYKGSLLLKFAVLCFAGFILVSLVGQQLQIGEKREELASLQEQLSTQTARNEEIQNSLENNSGVAEYAERKARSELDYAKPGERVFVDVGGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFV9</accession>
    <name>R6YFV9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Rqc2 homolog RqcH</fullName>
            <shortName evidence="1">RqcH</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rqcH</name>
        <name evidence="3" type="ORF">BN815_01467</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the ribosome quality control system (RQC). Recruits Ala-charged tRNA and directs the elongation of stalled nascent chains on 50S ribosomal subunits, leading to non-templated C-terminal Ala extensions (Ala tail). The Ala tail promotes nascent chain degradation. May add between 1 and at least 8 Ala residues. Binds to stalled 50S ribosomal subunits.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Associates with stalled 50S ribosomal subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NEMF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30224">
        <property type="protein sequence ID" value="CDD30224"/>
        <property type="gene ID" value="BN815_01467"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0072344">
        <property type="term" value="P:rescue of stalled ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00844_B">
        <property type="entry name" value="RqcH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008532">
        <property type="entry name" value="NFACT_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043682">
        <property type="entry name" value="RqcH_bacterial"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05670">
        <property type="entry name" value="NFACT-R_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="NFACT-R_1" evidence="2">
        <location>
            <begin position="466"/>
            <end position="566"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="584" mass="65620" checksum="9ED54F68E7C66B64" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGQ8</accession>
    <name>R6YGQ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01742</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30529">
        <property type="protein sequence ID" value="CDD30529"/>
        <property type="gene ID" value="BN815_01742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16409" checksum="27EA36384B52199C" modified="2013-07-24" version="1">MTNCRLTDPEFERGVKDFLAVCNVVKVFRHTRILQIAPRPFDFWSTMCNEGELLEKFNIQLSPIPLPELTAQVKKAKEEGTEVKAVMDYCEEKMNVCVTEEQLENIAALKVLCAGWRTSTAAMPWPSSAGTPCKGSWASCPARPTPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH08</accession>
    <name>R6YH08_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">30S ribosomal protein S16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsP</name>
        <name evidence="4" type="ORF">BN815_01851</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial ribosomal protein bS16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30644">
        <property type="protein sequence ID" value="CDD30644"/>
        <property type="gene ID" value="BN815_01851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00385">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000307">
        <property type="entry name" value="Ribosomal_S16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023803">
        <property type="entry name" value="Ribosomal_S16_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12919">
        <property type="entry name" value="PTHR12919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00886">
        <property type="entry name" value="Ribosomal_S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54565">
        <property type="entry name" value="SSF54565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00002">
        <property type="entry name" value="S16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="80" mass="9178" checksum="764ADFA23031046D" modified="2013-07-24" version="1">MAVKIRLRRMGAKKSPFYRIVVADSRFPRDGRFIEEIGYYNPMEEPSVVKVDPEKAKKWIANGAQPTDTVKALFKKHGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH12</accession>
    <name>R6YH12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Excinuclease ABC C subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01856</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30649">
        <property type="protein sequence ID" value="CDD30649"/>
        <property type="gene ID" value="BN815_01856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001162">
        <property type="entry name" value="UvrC_RNase_H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038476">
        <property type="entry name" value="UvrC_RNase_H_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08459">
        <property type="entry name" value="UvrC_HhH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50165">
        <property type="entry name" value="UVRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UVRC" evidence="2">
        <location>
            <begin position="55"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="358"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="393" mass="43862" checksum="9E6E6BF527CC3CC7" modified="2013-07-24" version="1">MKERQKVVASRVEEQDVFALAQGETHTAFEVFRFTGNKLSDRESFLTEGCQPDPEARSEFLRQYYAIRDRVPPLVVLDGEVEDQELLTRWLTEKRGKAVKVLIPQRGDQRQLVDMCRQNAAEHIARHTGTSGRDASALDELRRLLGLEKAPAYIESYDISNLAGGENVAGMVVFENGRPLKSAYRKFKIKTVVGQDDYASMREVIRRRFEEYKASQRKGEQEGFGRLPDLILLDGGKGHVAAVQPILDEMGFDVPLYGMVKDDKHRTRAIALDGGEIAISSHRRAFTLVSSIQDEVHRFAIGYHRQQRKKAAISSTLTSIPGIGETRAKALLRHFKTVTAVSEADLAELEGAPGMTKPAARRVWEHFHPPEGPQTPPKVGEEGPNPGEIAPNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH27</accession>
    <name>R6YH27_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01876</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000299">
        <property type="protein sequence ID" value="CDD30669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30669">
        <property type="protein sequence ID" value="CDD30669"/>
        <property type="gene ID" value="BN815_01876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="6671" checksum="A09007A4CCE69C3F" modified="2013-07-24" version="1">MASSGVSWYSPEKGISTVAAPMLESNRSESPFWQQTSSRAMFSFRASVPSFPARQAGTLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH54</accession>
    <name>R6YH54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000066">
        <property type="protein sequence ID" value="CDD27871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27871">
        <property type="protein sequence ID" value="CDD27871"/>
        <property type="gene ID" value="BN815_00725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="9298" checksum="0C262F940AB97559" modified="2013-07-24" version="1">MKNVQIPYDLFVALVEYHLGYDDEYEDEIRQGLEQKLDALVRHEMYAKYKTAPSPEEREQARQAYLDRRGVFPDFLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHD9</accession>
    <name>R6YHD9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome maturation factor RimP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rimP</name>
        <name evidence="6" type="ORF">BN815_00153</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for maturation of 30S ribosomal subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RimP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30804">
        <property type="protein sequence ID" value="CDD30804"/>
        <property type="gene ID" value="BN815_00153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01734">
        <property type="entry name" value="YlxS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01077">
        <property type="entry name" value="RimP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003728">
        <property type="entry name" value="Ribosome_maturation_RimP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028998">
        <property type="entry name" value="RimP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036847">
        <property type="entry name" value="RimP_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028989">
        <property type="entry name" value="RimP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035956">
        <property type="entry name" value="RimP_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33867">
        <property type="entry name" value="PTHR33867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02576">
        <property type="entry name" value="DUF150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74942">
        <property type="entry name" value="SSF74942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75420">
        <property type="entry name" value="SSF75420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="DUF150" evidence="5">
        <location>
            <begin position="50"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="169"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="172"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="197" mass="22698" checksum="028649DB2DFA700A" modified="2013-07-24" version="1">MMKEWGDPLFCLLIRIKRKSRPLGRERVKRMSPAPKKKGNVAQRVWELSEPLAKELNLSLWDVQFVKEGADWFLRVFIDKEGGVSIDDCVDMTHALSPVLDKEDPIPQEYMLEVSSPGLERKLTRPEHFAAFVGRPVRARLIRPLENGQRELTGILLRAEEDGQLELQLDEETSVTLEKKECSSVHSVEEDFDEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHR2</accession>
    <name>R6YHR2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HATPase_c_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30939">
        <property type="protein sequence ID" value="CDD30939"/>
        <property type="gene ID" value="BN815_02098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032834">
        <property type="entry name" value="NatK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14501">
        <property type="entry name" value="HATPase_c_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HATPase_c_5" evidence="1">
        <location>
            <begin position="41"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="159" mass="17283" checksum="0E8B71C3CC573A35" modified="2013-07-24" version="1">MPRYTANFAVNSILQDTASKAKAAGIAFTAEAQIPEKLPLSHQDLCALLMNLLDNALEAAAQVEEPSQRFLRLRLSLQKGFLAVRCENSYTGKLAQDGKGNLLTTKENPQTHGFGIAKMSAVAEKYKSILDIRYTDSVFTVQTALKLPGEARQTKSAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHW0</accession>
    <name>R6YHW0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase subfamily IA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02148</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30989">
        <property type="protein sequence ID" value="CDD30989"/>
        <property type="gene ID" value="BN815_02148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="135" mass="14612" checksum="43BE8EFA71D47F57" modified="2013-07-24" version="1">MALVEPYPGIVELLGKLKEQGFQVGVLSNKPDNVARDIVRTMFGPLVDQAHGQRAEFPTKPDPAAVLQMAADFGVEPGRGLYCGDSGVDMETGRNAGMAPCGVLWGFRERQELEEHGAQYLAATAQQLWEIASQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI59</accession>
    <name>R6YI59_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="13 14">Protein translocase subunit SecA</fullName>
            <ecNumber evidence="13">7.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">secA</name>
        <name evidence="18" type="ORF">BN815_02232</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="13">Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Peripheral membrane protein</topology>
            <orientation evidence="13">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="13">Distribution is 50-50.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 13 14">Belongs to the SecA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.4.2.8" evidence="13"/>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31079">
        <property type="protein sequence ID" value="CDD31079"/>
        <property type="gene ID" value="BN815_02232"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18803">
        <property type="entry name" value="SF2_C_secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01382">
        <property type="entry name" value="SecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000185">
        <property type="entry name" value="SecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020937">
        <property type="entry name" value="SecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011115">
        <property type="entry name" value="SecA_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014018">
        <property type="entry name" value="SecA_motor_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011130">
        <property type="entry name" value="SecA_preprotein_X-link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044722">
        <property type="entry name" value="SecA_SF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011116">
        <property type="entry name" value="SecA_Wing/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036670">
        <property type="entry name" value="SecA_X-link_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30612">
        <property type="entry name" value="PTHR30612"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07517">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01043">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07516">
        <property type="entry name" value="SecA_SW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00906">
        <property type="entry name" value="SECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00957">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00958">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81767">
        <property type="entry name" value="SSF81767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00963">
        <property type="entry name" value="secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01312">
        <property type="entry name" value="SECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51196">
        <property type="entry name" value="SECA_MOTOR_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="12 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 13 14" id="KW-0653">Protein transport</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 13" id="KW-1278">Translocase</keyword>
    <keyword evidence="11 13 14" id="KW-0811">Translocation</keyword>
    <keyword evidence="3 13 14" id="KW-0813">Transport</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SECA_MOTOR_DEAD" evidence="17">
        <location>
            <begin position="25"/>
            <end position="668"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="16">
        <location>
            <begin position="111"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="884"/>
            <end position="931"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="127"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="533"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003874"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD31079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="941" mass="107044" checksum="5F163B12252F9A18" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIQ1</accession>
    <name>R6YIQ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Mannonate dehydratase</fullName>
            <ecNumber evidence="5 6">4.2.1.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">D-mannonate hydro-lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">uxuA</name>
        <name evidence="7" type="ORF">BN815_00227</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the dehydration of D-mannonate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>D-mannonate = 2-dehydro-3-deoxy-D-gluconate + H2O</text>
            <dbReference type="Rhea" id="RHEA:20097"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17767"/>
            <dbReference type="ChEBI" id="CHEBI:57990"/>
            <dbReference type="EC" id="4.2.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Carbohydrate metabolism; pentose and glucuronate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 6">Belongs to the mannonate dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.8" evidence="5 6"/>
    <dbReference type="EMBL" id="CBGU010000393">
        <property type="protein sequence ID" value="CDD31289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31289">
        <property type="protein sequence ID" value="CDD31289"/>
        <property type="gene ID" value="BN815_00227"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00246"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008927">
        <property type="term" value="F:mannonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006064">
        <property type="term" value="P:glucuronate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00106">
        <property type="entry name" value="UxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004628">
        <property type="entry name" value="Man_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30387">
        <property type="entry name" value="PTHR30387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03786">
        <property type="entry name" value="UxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016049">
        <property type="entry name" value="Man_dehyd"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00695">
        <property type="entry name" value="uxuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="350" mass="39262" checksum="BF98CA427FE7D743" modified="2013-07-24" version="1">MKLSFRWYGDSDPISLEYISQIPGMRSIVTAVYDVKPGKVWPEESLARLKAQCEEHGLVFDVVESIPVSEDIKLGTDKRDAHIEAYCENVRRCAKYGVKCVTYNFMPVFDWTRTQLDKKAPDGSTSLVMYWEQMRGLDPLTDDIHLPGWDASYTQEEVRDLIRAYGELGEEGLWKNIEVFLKKVIPVAEECGVVMALHPDDPPYPIFGLPRVITCEENLDRYLSIVDSPSNALCLCTGSLGCAKFNDVPALVRKYSAAGRIGFMHLRNVKILEDGSFEERAHLSSCGSLDMYAIVKALVETGFDGYVRPDHGRMIWGETGKPGYGLYDRALGASYINGLFEACEKAQKGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJC0</accession>
    <name>R6YJC0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplN</name>
        <name evidence="6" type="ORF">BN815_00375</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 5">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31499">
        <property type="protein sequence ID" value="CDD31499"/>
        <property type="gene ID" value="BN815_00375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_L14_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_L14P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005745">
        <property type="entry name" value="Ribosomal_L14P_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_L14P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="PTHR11761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="SSF50193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01067">
        <property type="entry name" value="rplN_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="13347" checksum="D3B7FA94FF710C92" modified="2013-07-24" version="1">MIQQQSYLKVADNTGAKELMCIRVLGGTGRRYANIGDVVVASVKKAAPGGVVKKGDVVKAVIVRTSSGVRREDGTYIRFDENAAVIIRDDKNPRGTRIFGPVARELRDKEYMKILSLAPEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJC6</accession>
    <name>R6YJC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00911</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000099">
        <property type="protein sequence ID" value="CDD28661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28661">
        <property type="protein sequence ID" value="CDD28661"/>
        <property type="gene ID" value="BN815_00911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024234">
        <property type="entry name" value="DUF3801"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12687">
        <property type="entry name" value="DUF3801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="37"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="19098" checksum="4C86755F8320F81D" modified="2013-07-24" version="1">MQEEVENRTLTLVVNGTKFSGRLLKAAVFKYMTHRREKKLEGQRNRDSPVISKGKQSVKQLTGQNQGVSNIEITDPSIKEFEKIARKYGVDYAVKKDRSSSPPKYLIFFKGRDADALTAAFTEYTSKKVKKAQKTERPSILEKLGKFKGMLQNTVMDRHKRKELER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJL3</accession>
    <name>R6YJL3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31599">
        <property type="protein sequence ID" value="CDD31599"/>
        <property type="gene ID" value="BN815_00416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13186">
        <property type="entry name" value="SPASM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SPASM" evidence="1">
        <location>
            <begin position="53"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="16501" checksum="34A9904C0EDAFF68" modified="2013-07-24" version="1">MMEQCWEKFQKYRAQGCGTTFNLKDHLWTLFLYEKGLFDPKVYPEDEYVYEGCNCGNCHLTILSDGAVYACRRMESKVGNALTDDLYDLFTGPKLDQYRVYEKFEKCSKCELLRFCRGCPAVAAGYHGDMYAPDPECWKEVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKA1</accession>
    <name>R6YKA1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative iron-only hydrogenase system regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00075</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000113">
        <property type="protein sequence ID" value="CDD28966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28966">
        <property type="protein sequence ID" value="CDD28966"/>
        <property type="gene ID" value="BN815_00075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023860">
        <property type="entry name" value="FeFe-hyd_TM1266"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03959">
        <property type="entry name" value="hyd_TM1266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="8951" checksum="2BF51ABC89ABFD59" modified="2013-07-24" version="1">METRIAVIGIVVEEERSVELLNEILHEYRDAIIGRMGIPYRQKGISIISIAVDAPQDTISALSGKVGKLPGVSSKTAYAGVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM63</accession>
    <name>R6YM63_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ORF">BN815_01228</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29696">
        <property type="protein sequence ID" value="CDD29696"/>
        <property type="gene ID" value="BN815_01228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="3"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14781" checksum="EC8D0E2668E7280D" modified="2013-07-24" version="1">MTYMLDTNICIYVMKNKPEKVLRRFREELDGGLCISSITLAELEFGMKHSSNPAKNEQALLRFLAPLSILPFGAAAASEYGALRTYLQNKGTPIGPLDMLIAGHALAEGLTLVTNNVREFERVPDLQLENWAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMD0</accession>
    <name>R6YMD0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29776">
        <property type="protein sequence ID" value="CDD29776"/>
        <property type="gene ID" value="BN815_01262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13443">
        <property type="entry name" value="HTH_26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="69" mass="7998" checksum="AF352426F062BAD1" modified="2013-07-24" version="1">MKKIRLRLDILLQEAGINRLTLSKQTGISYPVIDRYYKNTVRQYDSSVLLRICLALGCDIKDLLEIVDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMD3</accession>
    <name>R6YMD3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MORN repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01265</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29781">
        <property type="protein sequence ID" value="CDD29781"/>
        <property type="gene ID" value="BN815_01265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003409">
        <property type="entry name" value="MORN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02493">
        <property type="entry name" value="MORN"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SMART" id="SM00698">
        <property type="entry name" value="MORN"/>
        <property type="match status" value="5"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="284"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="604"/>
            <end position="626"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="626" mass="68704" checksum="7B046ACADBBC41D9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNQ7</accession>
    <name>R6YNQ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01489</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30246">
        <property type="protein sequence ID" value="CDD30246"/>
        <property type="gene ID" value="BN815_01489"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024269">
        <property type="entry name" value="DUF3791"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12668">
        <property type="entry name" value="DUF3791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="8232" checksum="C3F8C2F2140C1B0E" modified="2013-07-24" version="1">MTRQGDFLIYCVETYKNAKHLTGKQVAELFTRYRVWDYVYSCFEALHTTGANYIVEDIDLYIEARKPAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPF9</accession>
    <name>R6YPF9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01683</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000250">
        <property type="protein sequence ID" value="CDD30466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30466">
        <property type="protein sequence ID" value="CDD30466"/>
        <property type="gene ID" value="BN815_01683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="217" mass="24136" checksum="3D03C2F771D76004" modified="2013-07-24" version="1">MNRHPQGARLGEQVQAALLYEPALAMRGDSLPNRPLPKLSPGDGELLALLNFIFQYRRPPWLPPFLFLEQSFRAEGIPGNDLELMGLCQRAVGPGNFGVKPHPRNGDDLPQRLGLSRRVELRVPWELFLLNEGPDRCCLVTVCSNGALSGRLCLGLDGNTVLLYKLYTGKVLWKENHTLARFLEAYRRQFAGGNTYVPQTSYQAASILKFLGGQYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPH0</accession>
    <name>R6YPH0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2">2.6.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00138</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000257">
        <property type="protein sequence ID" value="CDD30476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30476">
        <property type="protein sequence ID" value="CDD30476"/>
        <property type="gene ID" value="BN815_00138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SIS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="6">
        <location>
            <begin position="121"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="30057" checksum="1F6E7F42191BCD1B" modified="2013-07-24" version="1">MDEKTLVIIISQSGETADTLAALRMAKGKGCRILSIVNVVGSTIANESDDVLYTWAGPEIAVASTKAYSTQLAVIYMIALYMADQLGTVPEADMARYMADLQRLPDLAEAALADKETIQYFASRYFNAHDMYFIGRNVDYAASLEASLKLKEISYIHSEAYTAGELKHGPISLLEDGTLVIAIATYEKLFDKMMSNVREVKARGAVVLGITVRGKEEALKQETDYQFCVPDITDFMLPSLSILPLQLFAYYVASMKGCDIDKPRNLAKSVTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ81</accession>
    <name>R6YQ81_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30756">
        <property type="protein sequence ID" value="CDD30756"/>
        <property type="gene ID" value="BN815_01960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="352" mass="37939" checksum="25BBB7F165189AF0" modified="2013-07-24" version="1">MKAKWIGLLLLIVVALGAVGYVWFSQTTQVTEITGYVGGEKIGLLEDEQVRKILKDKYRLSLDYNRAGSIEMVTTLDRAGQDFLFPSNQTALELFEGEEGSPEKSQIVFNTPIVLYTHAAVAEALTAEGVFSQSGGVLTADMEQLVELMESGAQWSDVGLPELYGSVTVGTTDPAKSNSGNMFAGLLANVLCGGSVGEEDLPELLPRLQALFQKLGYMESSSSDLFDQFLKTGMGAKPLIAGYESQLLEFAVQEPETWEQIQGDIVLVYPTPTVWSSHVFIALDEAGALGIDALLDEEVQRLAWENHGFRTGVYDAPTDTAQFGVEGVAEEVTQVAPMPGAPVMEAIIAALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQW4</accession>
    <name>R6YQW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02110</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000350">
        <property type="protein sequence ID" value="CDD30951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30951">
        <property type="protein sequence ID" value="CDD30951"/>
        <property type="gene ID" value="BN815_02110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="3"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="370" mass="40809" checksum="159BD6FBAB9E0CAD" modified="2013-07-24" version="1">MNITLENLTKRFPARGRKAQGEVTAVEDLTFEIPDGMLVGLLGPSGCGKSTTLNMICGLETPTSGKIFFGEEDVTALAPELRGVGMVFQNYALYPHLTVMQNILFPLENLKGKERPSRQEMRRRALETAKLVQIEELLERKPRELSGGQQQRVAIARALVKMPRVLLLDEPLSNLDARLRLQTREEIVKIQKRTGITTLFVTHDQEEAMSISDRIVVMRNGLLMQQGAPQQVYDDPQNLFVAKFLGTPPINVFEGEVKGGVLQLGGQPAMDVPGAPDGKVFVGIRPEGFEPDPAGAVTCGLDRVEVLGRDTSMVCTHPACQAASLRAIVPSGQEADPRSATVRFRLRPDKVFLFHRETEERVPFDTTAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR56</accession>
    <name>R6YR56_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02165</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000358">
        <property type="protein sequence ID" value="CDD31011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31011">
        <property type="protein sequence ID" value="CDD31011"/>
        <property type="gene ID" value="BN815_02165"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="64" mass="7321" checksum="FB70C48376F257A7" modified="2013-07-24" version="1">MEGTQQAKEQAYLRRARELGRALGDSPEFSQLCREAYQKYRRGGISSAAYNAIYTVCLEYAQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRJ7</accession>
    <name>R6YRJ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Competence protein ComEA helix-hairpin-helix repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31216">
        <property type="protein sequence ID" value="CDD31216"/>
        <property type="gene ID" value="BN815_02360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004509">
        <property type="entry name" value="Competence_ComEA_HhH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00426">
        <property type="entry name" value="TIGR00426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HhH1" evidence="2">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="HhH1" evidence="2">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15575" checksum="700843B070863803" modified="2013-07-24" version="1">MDRESKFRMVLLLAAAAVTAVVLTGLYSARPLEFYQVTVEATPAPAAASSQAQPTQEPAGETIPVEEDTSSEGPQEVLVEKSVNLNTATLEELDLLPGVGPAIAQRIIDYREQNSGFYDIEEIMEVSGIGEKTFAKLEPYITVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRV2</accession>
    <name>R6YRV2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00007</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000396">
        <property type="protein sequence ID" value="CDD31311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31311">
        <property type="protein sequence ID" value="CDD31311"/>
        <property type="gene ID" value="BN815_00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426233" evidence="2">
        <location>
            <begin position="27"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="3">
        <location>
            <begin position="87"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="352" mass="37007" checksum="2965DE1896C0F595" modified="2013-07-24" version="1">MKKLIFFCLALAMAASLAACSQGGSGSSTQVAGESISSAVEESSATGGSSITESSETPAETPETVTITSVNAEGAETQLEVPYDPQRIAILDMASLDILDALGVGDRVVGTASTSLDYLQSYINEDIANLGIIKEADLEAVMSCEPDVIFIGGRLASSYDALSEIAPVVYLSTDTEQGVVESVRKNANTIASLFGLEEEVGSLMADFDSRIAALAEFAEGKTAIVGLVTSGGFNVLGNDGRCSMICREVGFENIGVDAEIDTATHGNEASFEFVVEKDPDYIFVLDRDAAIQTEGAQLAQEIVENELVKGTRAYTDGHIVYLSSPAVWYTAEGGITALDVMLQDLESELLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS17</accession>
    <name>R6YS17_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein conserved in bacteria</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00298</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000414">
        <property type="protein sequence ID" value="CDD31366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31366">
        <property type="protein sequence ID" value="CDD31366"/>
        <property type="gene ID" value="BN815_00298"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010611">
        <property type="entry name" value="3D_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007137">
        <property type="entry name" value="DUF348"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011098">
        <property type="entry name" value="G5_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06725">
        <property type="entry name" value="3D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03990">
        <property type="entry name" value="DUF348"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07501">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01208">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51109">
        <property type="entry name" value="G5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425815" evidence="2">
        <location>
            <begin position="43"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="domain" description="G5" evidence="3">
        <location>
            <begin position="264"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="473" mass="50687" checksum="CFB85B897B71364B" modified="2013-07-24" version="1">MYGRHMKKAPRLLAIRGAAALILVLALSIFPFATVMANTVSANVIDGDQSYTFNMSSTSLEDILAQAEERGMEPLGPLDVAERVEGTTTVVVRRGVELAVSEAGEESQLVAYVGDTVEQALLDNSIVLKDEDEVSPSRDTVIAGDTQVEIRRACQVVVIADGESRTVTRIGGTVQDALDEAGVTVGERDSLNYETDKPLFDKMHIRVTRVMDVQITADGETKAYETSAQTVEDALEKCGVQLGEEDRVEPALTEKVKDGMEITVRRVEVKEEVQTEEVAYETEYQDTASLYEGETQVKTEGVPGEKEVTYKVTYVDGEEESREAASEKVTKEPVAEVVLRGTSQKEEASGGVDVSGGNGTGNVAGTFVDMYGNTVSYSSMMSGTCTAYSVPGGTTSLGWDAVYGVVAVNPNIIPYGTKMYITSPDGSVVYGYGVAGDTGGAAMAGDILADLCYNTIEECSQIGRRTMNIYILS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBP6</accession>
    <name>R6ZBP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">23S rRNA (Uracil-5-)-methyltransferase RumA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00052</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27902">
        <property type="protein sequence ID" value="CDD27902"/>
        <property type="gene ID" value="BN815_00052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030390">
        <property type="entry name" value="MeTrfase_TrmA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010280">
        <property type="entry name" value="U5_MeTrfase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11061">
        <property type="entry name" value="PTHR11061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01938">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05958">
        <property type="entry name" value="tRNA_U5-meth_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51687">
        <property type="entry name" value="SAM_MT_RNA_M5U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01230">
        <property type="entry name" value="TRMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRAM" evidence="6">
        <location>
            <begin position="3"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="411"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="411"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="384"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="546" mass="60127" checksum="705A716E0B05F8F1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZE65</accession>
    <name>R6ZE65_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase I</fullName>
            <ecNumber evidence="6">2.1.1.198</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA 2'-O-ribose C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytidine-2'-O-)-methyltransferase RsmI</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmI</name>
        <name evidence="8" type="ORF">BN815_00964</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(1402) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42924"/>
            <dbReference type="Rhea" id="RHEA-COMP:10285"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.198"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the methyltransferase superfamily. RsmI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.198" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28812">
        <property type="protein sequence ID" value="CDD28812"/>
        <property type="gene ID" value="BN815_00964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070677">
        <property type="term" value="F:rRNA (cytosine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000453">
        <property type="term" value="P:enzyme-directed rRNA 2'-O-methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11648">
        <property type="entry name" value="RsmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01877">
        <property type="entry name" value="16SrRNA_methyltr_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008189">
        <property type="entry name" value="rRNA_ssu_MeTfrase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018063">
        <property type="entry name" value="SAM_MeTrfase_RsmI_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46111">
        <property type="entry name" value="PTHR46111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005917">
        <property type="entry name" value="MTase_YraL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00096">
        <property type="entry name" value="TIGR00096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01296">
        <property type="entry name" value="RSMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="10"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="30497" checksum="8359FFB62B7009BA" modified="2013-07-24" version="1">MEQALERGALYVVGTPIGNLGDFSPRARETLEAADFIAAEDTRVTLRLLNHFGIKKPLISYFEHNKLEHGPLIVARLQEGQTCALVSDAGMPAISDPGETLVAACAAAGLPVYVVPGPTAALSALAISGLPTGRFTFEGFLSVNKRSRKEHLEAVAQEQRTMIFYEAPHKLRKTLSDFAKVFGPDRPIALCRELTKVHEEVWRTTLGEAAAHYRETEPRGEFVLVVAGAEEAPAPEAAYTLEEAAQLAASLAAGGLSASEAAKEAAQTTGFKKGELYRLLLEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF22</accession>
    <name>R6ZF22_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01056</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000122">
        <property type="protein sequence ID" value="CDD29087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29087">
        <property type="protein sequence ID" value="CDD29087"/>
        <property type="gene ID" value="BN815_01056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426569" evidence="2">
        <location>
            <begin position="24"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="161"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="20603" checksum="B396BEB6956ED289" modified="2013-07-24" version="1">MELVVNSKPLKAMARLSMVSRGAASWATSGWLYSSSWQMGWAKRAMPTEAGMPMSSVTRKAVEEMRSTWRWSLEAMAPESTGSRLVEMGTTKAPGKSKNLRALPKVPFHQSAMSWVKPAPVCRRCIKMAPSMVSSKLKKQEPMVIGTAKRTRLISVCCREVRGSSSPKPRRRSRRPWTNLHPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG68</accession>
    <name>R6ZG68_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000149">
        <property type="protein sequence ID" value="CDD29452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29452">
        <property type="protein sequence ID" value="CDD29452"/>
        <property type="gene ID" value="BN815_01161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438880" evidence="1">
        <location>
            <begin position="25"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15177" checksum="BF10B46C5710A8C2" modified="2013-07-24" version="1">MKRCAALFLTVLLLCGVLTGCAPRPEKGQALVEERGVKVTYTGMEQAEDGDVALHLAVENNSGQPIVVNVQEFSANRCQMAASFASEVAAGETSHAVLTIPAGELERYGLDTVEEASFFLVVFHGDTLERILTTEQLHVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZH36</accession>
    <name>R6ZH36_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative tRNA (cytidine(34)-2'-O)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.207</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA (cytidine/uridine-2'-O-)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01260</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could methylate the ribose at the nucleotide 34 wobble position in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-carboxymethylaminomethyluridine(34) in tRNA(Leu) + S-adenosyl-L-methionine = 5-carboxymethylaminomethyl-2'-O-methyluridine(34) in tRNA(Leu) + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43088"/>
            <dbReference type="Rhea" id="RHEA-COMP:10333"/>
            <dbReference type="Rhea" id="RHEA-COMP:10334"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74508"/>
            <dbReference type="ChEBI" id="CHEBI:74511"/>
            <dbReference type="EC" id="2.1.1.207"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine(34) in tRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(34) in tRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43084"/>
            <dbReference type="Rhea" id="RHEA-COMP:10331"/>
            <dbReference type="Rhea" id="RHEA-COMP:10332"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.207"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.207" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29772">
        <property type="protein sequence ID" value="CDD29772"/>
        <property type="gene ID" value="BN815_01260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18094">
        <property type="entry name" value="SpoU-like_TrmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01885">
        <property type="entry name" value="tRNA_methyltr_TrmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016914">
        <property type="entry name" value="tRNA_cyt/urid_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42971">
        <property type="entry name" value="PTHR42971"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029256">
        <property type="entry name" value="SpoU_TrmH_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="3">
        <location>
            <begin position="4"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1 2">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1 2">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1 2">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR029256-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="19858" checksum="38C898BCF8F66E79" modified="2013-07-24" version="1">MPSLHIVLVEPEIPQNTGNIARTCAVTGAALHLVGPMGFQLEDKKLRHAGLDYWPYLTLSTYASLSEFFEKNQGSFFFFSTKAQRRYTDVSYPDGSYLFFGKESAGLPEKLLFQHPEQCVRIPMLGGFRSLNLANSVAIGTFEVLRQWDFPQLECSGQLRDFDWAAAKAAHPGSEFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI50</accession>
    <name>R6ZI50_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01380</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30122">
        <property type="protein sequence ID" value="CDD30122"/>
        <property type="gene ID" value="BN815_01380"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426664" evidence="1">
        <location>
            <begin position="25"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15408" checksum="93AED5BDDE415439" modified="2013-07-24" version="1">MKKKLTALLLALALVYTFSLPVAAAQKTVEWEGVTYTVDTETQTIHDGESVYEYQVELYRDGYTLEITYPNGAFWSASVTESDGTYGWNEEYDMKGTVYPTGDTLETVLHNAGVTYISQSGEKSVLLLLVLLGIGIFSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI91</accession>
    <name>R6ZI91_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplU</name>
        <name evidence="6" type="ORF">BN815_01412</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">This protein binds to 23S rRNA in the presence of protein L20.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit. Contacts protein L20.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30167">
        <property type="protein sequence ID" value="CDD30167"/>
        <property type="gene ID" value="BN815_01412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="L21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="L21p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_L21"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="PTHR21349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="SSF141091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="102" mass="11241" checksum="EACB0E296B679A29" modified="2013-07-24" version="1">MFAVIETGGKQYKVQYGDVIYVEKLNAAENDTVEFPVVAVFGEEGTKIGAPYVEGATVTGKVVKNGKAKKITVFTYKPKKNSKRKMGHRQPYTKVQIEAVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIF5</accession>
    <name>R6ZIF5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Hydrolase_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01480</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30237">
        <property type="protein sequence ID" value="CDD30237"/>
        <property type="gene ID" value="BN815_01480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011105">
        <property type="entry name" value="Cell_wall_hydrolase_SleB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042047">
        <property type="entry name" value="SleB_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07486">
        <property type="entry name" value="Hydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438607" description="Hydrolase_2 domain-containing protein" evidence="1">
        <location>
            <begin position="28"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Hydrolase_2" evidence="2">
        <location>
            <begin position="139"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="25915" checksum="014E5ABFF8C0E5A7" modified="2013-07-24" version="1">MKRIAALTLSAALLVLAAVGLSMPASAAGLSQHVQVTGYDPNVDYTAAIQRTLEDGSAYAMQVGAIYEQQRNLKIQDLGLELEQTDYFQRYTTAAEILQAMEEAQRQEEEPAYTEEDLDLLSRVIYAEVGCTWIPDWVQRMVGSVVLNRVNSPYYPDTIYDVIYQPGQYAPTWDGSIHKTPDARTIENARYLLENGSICPENVVGQNSIITGSGVYTSYQDPILGTTVYFCYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJZ5</accession>
    <name>R6ZJZ5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">UDP-N-acetylglucosamine kinase</fullName>
            <ecNumber evidence="3">2.7.1.176</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">UDP-N-acetylglucosamine kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01981</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + UDP-N-acetyl-alpha-D-glucosamine = ADP + H(+) + UDP-N-acetyl-alpha-D-glucosamine 3'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:32671"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:64353"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.176"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zeta toxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.176" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30777">
        <property type="protein sequence ID" value="CDD30777"/>
        <property type="gene ID" value="BN815_01981"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010488">
        <property type="entry name" value="Zeta_toxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06414">
        <property type="entry name" value="Zeta_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Zeta_toxin" evidence="7">
        <location>
            <begin position="55"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00032897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="20473" checksum="5136ACCCFD1AD498" modified="2013-07-24" version="1">MKLYTIIGGVNGCGKSSLTGALKAERSDLGLIIDVDKLAAQLHSPVEGGKAAVRKIDQCLEKGISFTQETTLSGARTERTIRRAKERGYTIRLYYIGLDTMEESLGRIANRVAKGGHDIPKADVERRFQSRFTDVLRVLPYCDEARFFDNDNGFVEVAEYRNGELIPRVPTPPRWLLELMGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKC6</accession>
    <name>R6ZKC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02074</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000341">
        <property type="protein sequence ID" value="CDD30912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30912">
        <property type="protein sequence ID" value="CDD30912"/>
        <property type="gene ID" value="BN815_02074"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10593" checksum="D8AF9A74AB2269EE" modified="2013-07-24" version="1">MLKAKSVRGKTGASPKRGLAQCFVNNWDLYAMLLLPIVYIVIFKYVPMAGVQMAFRDYSVFKGMWDSPWVGLEHFKTFFSSSEFGKLLTNTLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKI2</accession>
    <name>R6ZKI2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02126</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30967">
        <property type="protein sequence ID" value="CDD30967"/>
        <property type="gene ID" value="BN815_02126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="211" mass="23337" checksum="ACA25048AEF0BE17" modified="2013-07-24" version="1">MNAIISLREVTKRFRETVALDKVTVDFEAGKIHGIVGRNGSGKTVLMKCVCGLMHQDAGEILVRGQRVGKDVDIPQGIGAIIEAPGFLPNFSGYRNLKFLADIRRQVGKERVRWAMETVGLDPDSPKHVGKYSLGMRQRLGLAQAILEDPDLLILDEPMNGLDKRGVEEMRRLLLGLRQEGKTILLASHSSEDIALLCDTVHEMDGGRLQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLA5</accession>
    <name>R6ZLA5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA dimethylallyltransferase</fullName>
            <ecNumber evidence="6">2.5.1.75</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Dimethylallyl diphosphate:tRNA dimethylallyltransferase</fullName>
            <shortName evidence="6">DMAPP:tRNA dimethylallyltransferase</shortName>
            <shortName evidence="6">DMATase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Isopentenyl-diphosphate:tRNA isopentenyltransferase</fullName>
            <shortName evidence="6">IPP transferase</shortName>
            <shortName evidence="6">IPPT</shortName>
            <shortName evidence="6">IPTase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">miaA</name>
        <name evidence="10" type="ORF">BN815_02376</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6 8">Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6 7">
            <text>adenosine(37) in tRNA + dimethylallyl diphosphate = diphosphate + N(6)-dimethylallyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:26482"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10375"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74415"/>
            <dbReference type="EC" id="2.5.1.75"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6 9">Belongs to the IPP transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.75" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31232">
        <property type="protein sequence ID" value="CDD31232"/>
        <property type="gene ID" value="BN815_02376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052381">
        <property type="term" value="F:tRNA dimethylallyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00185">
        <property type="entry name" value="IPP_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039657">
        <property type="entry name" value="Dimethylallyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018022">
        <property type="entry name" value="IPT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11088">
        <property type="entry name" value="PTHR11088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00174">
        <property type="entry name" value="miaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 6 7" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="15"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with substrate tRNA" evidence="6">
        <location>
            <begin position="38"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="13"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="6">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with substrate tRNA" evidence="6">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003783"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="327" mass="36539" checksum="2FD7FDE37732DA61" modified="2013-07-24" version="1">MTAAKIPVAAVVGPTATGKTELGIQLCQRLGGEIVSCDSMQVYKGLPIGTAQPTAEELAAAPHHLIGFLDVEQPFSVSDYVDAAGQVIREISSRGKLPILVGGTGLYARSLLRGFSFEERGRDDALRQRLFQEAEDQGIDALYQRLERLDPKAAEEIHPHNVKRVIRALEYIQLCGEPFSAQAERSHSAQSPYQYVMLCLGYENRETLYRRIDARVDKMLEQGLLPEAQAFYSRCQQAGSIPTAAQAIGYKELFPYFRGEVSLEEAVEAIKRESRRYAKRQITWFKREEQVEFLPIDAFPSRQALLEEAVSLLGKWGVWKGGNACEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLJ9</accession>
    <name>R6ZLJ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00262</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31327">
        <property type="protein sequence ID" value="CDD31327"/>
        <property type="gene ID" value="BN815_00262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="16549" checksum="7101671A4CB6EA69" modified="2013-07-24" version="1">MDTVFRVATAGDEAAIRRLFVEMLRTIFHTQEVEGYPAGYVGRFFTGGEDEILVAEQAGAVVGFLSLESHREGEPPFLYLDDFSVTAACRGQGIGFRLLDMAEEYAAALGLGEIHLHVERDNLGARRLYQRRGFGVLAEQGARLLLGKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLM9</accession>
    <name>R6ZLM9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">Diaminopimelate epimerase</fullName>
            <shortName evidence="16">DAP epimerase</shortName>
            <ecNumber evidence="16">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="primary">dapF</name>
        <name evidence="21" type="ORF">BN815_00294</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6 16">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="16">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="16">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the CarB family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 16">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="21">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="16"/>
    <dbReference type="EMBL" id="CBGU010000413">
        <property type="protein sequence ID" value="CDD31362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31362">
        <property type="protein sequence ID" value="CDD31362"/>
        <property type="gene ID" value="BN815_00294"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01424">
        <property type="entry name" value="MGS_CPS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005480">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036897">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005483">
        <property type="entry name" value="CbamoylP_synth_lsu_CPSase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033937">
        <property type="entry name" value="MGS_CPS_CarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00098">
        <property type="entry name" value="CPSASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01096">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48108">
        <property type="entry name" value="SSF48108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 16" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="16" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="15 16" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13 16" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="14" id="KW-0464">Manganese</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="19">
        <location>
            <begin position="171"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="MGS-like" evidence="20">
        <location>
            <begin position="430"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="16">
        <location>
            <begin position="645"/>
            <end position="646"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="16">
        <location>
            <begin position="791"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="16">
        <location>
            <begin position="801"/>
            <end position="802"/>
        </location>
    </feature>
    <feature type="active site" evidence="18">
        <location>
            <position position="644"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="16">
        <location>
            <position position="644"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="16">
        <location>
            <position position="800"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="582"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="635"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="740"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="773"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="16">
        <location>
            <position position="742"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="16">
        <location>
            <position position="791"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00009799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="CDD31362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="857" mass="93662" checksum="45FA3CB9265627F9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM11</accession>
    <name>R6ZM11_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 7">50S ribosomal protein L3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplC</name>
        <name evidence="8" type="ORF">BN815_00365</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31487">
        <property type="protein sequence ID" value="CDD31487"/>
        <property type="gene ID" value="BN815_00365"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_B">
        <property type="entry name" value="Ribosomal_L3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_L3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_L3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019926">
        <property type="entry name" value="Ribosomal_L3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="PTHR11229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00474">
        <property type="entry name" value="RIBOSOMAL_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22320" checksum="63A8F1C4B395148C" modified="2013-07-24" version="1">MKKGIIGKKIGMTQIFDEKGKVIPVTVIEAGPCVVTQKKTVENDGYNAVQIGFGDQKPQRVSKPLAGHFKKGDVAPKKTLRELRLDDISALNVGDLIKADTFETGERVDVTGKSKGKGYAGVIKRWNFRRLKETHGTGPVARHGGSNGACSTPSRVWKGLKMAGHLGAETVTVQNLTVAKVDAENNLIAVKGAIPGPNGGIVVVRDSVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU06</accession>
    <name>R6XU06_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">4-alpha-glucanotransferase</fullName>
            <ecNumber evidence="3 7">2.4.1.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 7">Amylomaltase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6 7">Disproportionating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00022</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Transfers a segment of a (1-&gt;4)-alpha-D-glucan to a new position in an acceptor, which may be glucose or a (1-&gt;4)-alpha-D-glucan.</text>
            <dbReference type="EC" id="2.4.1.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the disproportionating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.25" evidence="3 7"/>
    <dbReference type="EMBL" id="CBGU010000024">
        <property type="protein sequence ID" value="CDD27213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27213">
        <property type="protein sequence ID" value="CDD27213"/>
        <property type="gene ID" value="BN815_00022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004134">
        <property type="term" value="F:4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102500">
        <property type="term" value="F:beta-maltose 4-alpha-glucanotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003385">
        <property type="entry name" value="Glyco_hydro_77"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32438">
        <property type="entry name" value="PTHR32438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02446">
        <property type="entry name" value="Glyco_hydro_77"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00217">
        <property type="entry name" value="malQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="495"/>
            <end position="540"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00031501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="540" mass="60899" checksum="9AB6BC53C962DA1E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV72</accession>
    <name>R6XV72_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">AAA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00678</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CbxX/CfxQ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27628">
        <property type="protein sequence ID" value="CDD27628"/>
        <property type="gene ID" value="BN815_00678"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041627">
        <property type="entry name" value="AAA_lid_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000641">
        <property type="entry name" value="CbxX/CfxQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17866">
        <property type="entry name" value="AAA_lid_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00819">
        <property type="entry name" value="CBXCFQXSUPER"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="3">
        <location>
            <begin position="470"/>
            <end position="608"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="16"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="21"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="692" mass="75270" checksum="F9E2A7CEC3A42B5B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWT1</accession>
    <name>R6XWT1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyruvate flavodoxin/ferredoxin oxidoreductase thiamine diP-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00784</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28203">
        <property type="protein sequence ID" value="CDD28203"/>
        <property type="gene ID" value="BN815_00784"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07034">
        <property type="entry name" value="TPP_PYR_PFOR_IOR-alpha_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033412">
        <property type="entry name" value="PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002880">
        <property type="entry name" value="Pyrv_Fd/Flavodoxin_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17147">
        <property type="entry name" value="PFOR_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01855">
        <property type="entry name" value="POR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR_N" evidence="1">
        <location>
            <begin position="13"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="PFOR_II" evidence="2">
        <location>
            <begin position="246"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="37565" checksum="AA904B94BA427AE3" modified="2013-07-24" version="1">MKVLMKGNEALAEAAIRAGCHHFFGYPITPQTELAAYMSKRMPKVGGTYLQAESEIAAINMVLGASAAGVRAMTSSSSPGISLKGEGISYMAGSDLPAVIINVQRGGPGLGGIQPSQADYWQATKATGHGDFQILVFAPSTVQEMVDLISHAFDTADKYRMPAMVLADGMLGQMMEPVELPEEGSAQLPEKEWAAKGHGGKRAHNIINSLYLTPEKLEELVKERFARYEQVKANEQMAEEYLTEDADIVLVAYGASSRVARSAVNKAREKGIKAGLVRPITLWPFPTQALNRAASHAKNFLVVEMSMGQMVDDVKLAIDCKVPVHFYGRTGGMIPTPAEVLEQIEALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZF7</accession>
    <name>R6XZF7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="3 7">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recG</name>
        <name evidence="10" type="ORF">BN815_01065</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 7"/>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29133">
        <property type="protein sequence ID" value="CDD29133"/>
        <property type="gene ID" value="BN815_01065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004609">
        <property type="entry name" value="ATP-dep_DNA_helicase_RecG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045562">
        <property type="entry name" value="RecG_dom3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033454">
        <property type="entry name" value="RecG_wedge"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19833">
        <property type="entry name" value="RecG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17191">
        <property type="entry name" value="RecG_wedge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00643">
        <property type="entry name" value="recG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="269"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="439"/>
            <end position="607"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="679" mass="75487" checksum="1ADD0066D9617167" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZN3</accession>
    <name>R6XZN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01098</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29228">
        <property type="protein sequence ID" value="CDD29228"/>
        <property type="gene ID" value="BN815_01098"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="49" mass="5569" checksum="81D9A666DDE8AE68" modified="2013-07-24" version="1">MDDGDSHPASDNFNQIQCVEKHNLLLRPWRGAAAGYAFLCFPGKFYPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZY4</accession>
    <name>R6XZY4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Asparagine synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000020">
        <property type="protein sequence ID" value="CDD27185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27185">
        <property type="protein sequence ID" value="CDD27185"/>
        <property type="gene ID" value="BN815_00532"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004066">
        <property type="term" value="F:asparagine synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006529">
        <property type="term" value="P:asparagine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01991">
        <property type="entry name" value="Asn_Synthase_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001962">
        <property type="entry name" value="Asn_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00733">
        <property type="entry name" value="Asn_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparagine synthetase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="347" mass="40193" checksum="80F1B520132DD6EE" modified="2013-07-24" version="1">MACSAHVDKTFTVGFDNGTKYNEISYAQELSEQIPVKNISHIITPEEFWGNFGKIQYHMDEPLADPAAVALYFVCNLASQHLKVVLSGEGADEIFGGYNIYKEPLEMQWYDKIPFPLRKLIGKIAGALPAHRGLNFLVRRGKRLEERFIGNAYMFTEKERQALLKHPTGAPAPEALCKPYYDMVRDKDPVTKMQFVDLNMWMVGDILLKADKMSMANSLELRVPFLDKKIMALAGRIPLKYRVNEENTKYAMRKAALRRMPEKWAGKKKLGFPVPTRVWLKEDKYYNIVKEEFLGENAQKFFHTEKLVKLLDDHKNGKADNSRRVWTVYTFLIWYKQFFGEETREAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y056</accession>
    <name>R6Y056_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bacterial group 2 Ig-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000146">
        <property type="protein sequence ID" value="CDD29398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29398">
        <property type="protein sequence ID" value="CDD29398"/>
        <property type="gene ID" value="BN815_00090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="31307" checksum="E40FED8DA4292512" modified="2013-07-24" version="1">MFRLRRTKRPVVHSRHGWPNRSWHIPALMGAVCLLLAASLALGVMELGTGGSAASVQEAASVESAQGEEESETEAGVSQAALWEEAALSEASSAVESAPEESSQGAVDFAVSYYEEPQPITEEEAAATLESLRDTFPEGAYWNHVGVEDWDEFTVTDSPCQHDLYWDAYCNTYTGGIQELFPQFEPMEQCLGFAALLSDLVFGEDAPVSTFTDYTQLRVGDNIRLELTEHSMVVLTVDGEGITVVECNSDYEHCRISWDRFLSWDDLAATRYEMECITRYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0C4</accession>
    <name>R6Y0C4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00594</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27330">
        <property type="protein sequence ID" value="CDD27330"/>
        <property type="gene ID" value="BN815_00594"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="11447" checksum="51050F3E57A182AD" modified="2013-07-24" version="1">MRTDLSKKQKTTSVFFDEASPIIEVCTYNTSLKKRLSEYAAKYPTECRLVDDDENGCLTFEIRKGRFSFKLNAPYSAERRKAASELAKKNIQNLQQDKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0J0</accession>
    <name>R6Y0J0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF1648 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01179</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29508">
        <property type="protein sequence ID" value="CDD29508"/>
        <property type="gene ID" value="BN815_01179"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012867">
        <property type="entry name" value="DUF1648"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07853">
        <property type="entry name" value="DUF1648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1648" evidence="2">
        <location>
            <begin position="12"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16002" checksum="B09F12EE45491F9A" modified="2013-07-24" version="1">MKMLKTYWLELLFFAVGLVGAVIAMPFLPASVPLQFQGDGVITRTGPKWAVFIVPVVQLLVCYGFHWWIGRCLEKLPALAHTLAGMERLLPAVLSIILLTLELCVLLAAWGVTIPLGAVLLVELLLVPIVFIGFVAAKILGNIGKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0U0</accession>
    <name>R6Y0U0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4097 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29653">
        <property type="protein sequence ID" value="CDD29653"/>
        <property type="gene ID" value="BN815_00099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025164">
        <property type="entry name" value="DUF4097"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13349">
        <property type="entry name" value="DUF4097"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4097" evidence="1">
        <location>
            <begin position="126"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="332" mass="34525" checksum="F5176E7FF91A0B72" modified="2013-07-24" version="1">MKKRWVFTGVAGLLGALFLGCVLWVGGVSGWFGLGALAAGEEPAWEHAYPTTWDPAGRPVEDLLIQWGSGPVEVRVGEGPVVTVTEYASRPLEEGEMLSLSFSGGALEIAWDGGLLPLGGLQNWQKRLVVEVPQDIASQLDEFSCGNTQGNIKVNGFTAETARVSSLSGDVDLAGFNGVKVNASTVSGAVHWRGGSAQEVDVETNSGPVSLSDVTAQDCRLKTVTGRVDFAGSSALAFAVETVSGDVSTRLGACPQEADLRSAAGDITVNLEENSGFAAEYASVSGRFSSDFTGAGEKGRLLYGSGGPKLTLATTWGDIRLQRAAGPQARLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1G6</accession>
    <name>R6Y1G6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PF06949 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01299</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0473 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29913">
        <property type="protein sequence ID" value="CDD29913"/>
        <property type="gene ID" value="BN815_01299"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009711">
        <property type="entry name" value="UPF0473"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06949">
        <property type="entry name" value="DUF1292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="11548" checksum="FC0CDD138A625421" modified="2013-07-24" version="1">MDHEYEADLLTLLDDEGQEHEFEIIDELENDDGHFLALVPTQQEPDEIASDAETYYIFEVIEEDGEEQLQEVDDDALLDKLAAIFEERFNEAYFDGEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2P6</accession>
    <name>R6Y2P6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000220">
        <property type="protein sequence ID" value="CDD30323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30323">
        <property type="protein sequence ID" value="CDD30323"/>
        <property type="gene ID" value="BN815_01557"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011256">
        <property type="entry name" value="Reg_factor_effector_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16489" checksum="B5F517329ABE881F" modified="2013-07-24" version="1">MFQMKKEAFSVLGKEGSTQQGPGFIQALWEDANGHFAQIAHLAKRDGQGDLLGVWGAMTDMSRSFLPWEENFQKGLYLAGVECVDTAQPPAGWTKWTIPGFEYRVVEQGPGAFAQALAALAEEGLPLAGAVQELTLPAAGKEYLCFPVRKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Y9</accession>
    <name>R6Y2Y9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00781</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28195">
        <property type="protein sequence ID" value="CDD28195"/>
        <property type="gene ID" value="BN815_00781"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="222" mass="24025" checksum="1B90BE18DE3CD562" modified="2013-07-24" version="1">MSQQPRITVVCGHYGCGKTNLTLNLALEAAAAGERVTVADLDIVNPYFRSSEYGGLLEEQGVRLIAPVFAGTTLDTPTLPPELYSIFEPQAGQVFIDAGGDDAGVTALGGLHSQLEETGYQMLYVINRYRVLSQTPEEAAALLGEIEAASRLKATALVNNSHLGVETRLDTLLGGLDFARKTAQLTGLPLLYSTAPDFALRDGETLPEGFKRIQRHVKFMWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3K3</accession>
    <name>R6Y3K3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Shikimate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01761</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30548">
        <property type="protein sequence ID" value="CDD30548"/>
        <property type="gene ID" value="BN815_01761"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="20922" checksum="42BBC6B0A5035C54" modified="2013-07-24" version="1">MILGPSGAGKTTLGRRTAQRLGLAFLDIDEFIWRKDTPKPFTAMFSREERIARLQQAVSQAGRFVMAGSMDSFHQHFDPYFRLAVYLPAPAALRVERVHRRELEAFGPRVLPGGDMEEDHRLYLKDVAGYELGTGSTTQQRHQAWIDSLFCKVIRLDGAAPIESNAEAICQAWWKVMELVKETGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3X7</accession>
    <name>R6Y3X7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ISPsy14 transposase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01888</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000305">
        <property type="protein sequence ID" value="CDD30683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30683">
        <property type="protein sequence ID" value="CDD30683"/>
        <property type="gene ID" value="BN815_01888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13552" checksum="931DE57727D1A22D" modified="2013-07-24" version="1">MPPEHQKYLTYNADEFSRWAMSVGPMTEKVAEHFLKSGKAVEQGYKACAGLTKLEQRYGKQRLEAACGKTLAYSTAPSLRTIASILKNGLDKPDKAESQLSQSKANSYGITRGAAYFRKGGDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Q5</accession>
    <name>R6Y4Q5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02080</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30918">
        <property type="protein sequence ID" value="CDD30918"/>
        <property type="gene ID" value="BN815_02080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="160"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="263" mass="29874" checksum="5EA4FDDD8E46A7A0" modified="2013-07-24" version="1">MSFIEVERSVRPGSWTMQGLHAHPHYEIYYLYQGSRQLLLANALYHMEAPSLAVIPPGAPHKTEGGPFARFNINVSPDYANPFQREVLQARALGAVPLSPEEHSAMFPLLEDLERCPPGGRHSGYVIQALFGYLVVLLSRVEAASHQGITVERPLPPLVLKVLDYLYSHYQESQSLDSLAAQFFVSKATILYNFKRYLHTSPMDFLLNLRLEKAKEALETTNKSICQIAEECGFRSANYFSLIFKRKEQLSPLHYRKHQRAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4S7</accession>
    <name>R6Y4S7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Response regulator of the LytR/AlgR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02097</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30938">
        <property type="protein sequence ID" value="CDD30938"/>
        <property type="gene ID" value="BN815_02097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="5"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="HTH LytTR-type" evidence="5">
        <location>
            <begin position="134"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="27320" checksum="093D30A49A0C6BAE" modified="2013-07-24" version="1">MEPYRLAICEDDPRERQSLESLCREILQKRGIPGEVASYPSTEALNASLQEGRGPFDLLLLDIQMAGINGMEFAKRLRDRGDEVRILFITGAAEYALEGYQVNPIHYLLKPVNQRDLERVLVGDWERNHRSKTLLFRQGTKWVALAVEDILYIESLNRNVVVHTDKAQHTFSMTLTEVEAMVPGGGFAKCHNSFLVNFRRVEEIGRTSLRLRSGEELPMGRRFYRDFQTTFVRFINQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y597</accession>
    <name>R6Y597_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29025">
        <property type="protein sequence ID" value="CDD29025"/>
        <property type="gene ID" value="BN815_01032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025374">
        <property type="entry name" value="DUF4364"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14277">
        <property type="entry name" value="DUF4364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="21740" checksum="76815358266EFD37" modified="2013-07-24" version="1">MKQDAFSAGVEPGGLWHKNDIRILLCYILASVGAPLSRQDLSRIIQEKGLANYFEVEDALATLLKQGNITQDEQGFCAVTRGGLEIANSLDATLPLSVRDKALEAAFTLLAQAKAQRENRVELQKIKQGYQVTCHISGGDMDLMAVTLYVPDRAQAEMVKRSFYKDPAGVYKLVLASLTKDTSLAREYFIERQEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5L7</accession>
    <name>R6Y5L7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01078</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000127">
        <property type="protein sequence ID" value="CDD29175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29175">
        <property type="protein sequence ID" value="CDD29175"/>
        <property type="gene ID" value="BN815_01078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025427">
        <property type="entry name" value="DUF4160"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13711">
        <property type="entry name" value="DUF4160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10849" checksum="54F7CBF5A2E3CD66" modified="2013-07-24" version="1">MPQIFKIGSYWVFFWANESDPLEPIHVHVCEGAPNANATKIWITKAGKCYLCHNNSRIPERTLRNIMKIIEARSAEVIQKWRDFFGEVRYYC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5T4</accession>
    <name>R6Y5T4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31303">
        <property type="protein sequence ID" value="CDD31303"/>
        <property type="gene ID" value="BN815_00241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="251" mass="29186" checksum="ABE6A8748772EB62" modified="2013-07-24" version="1">MITIVPVSTPDKKLLNKEEIEAAVAIIEVINRWFQNIGLGIGSADLQVIKWPSLGYPLFSPHSLNPGFPCDQIYISMDQYTRWDQFIFQASHEFTHCVIHRLNSHENQKALWIEETICEAISLVFLQMFANSWNNCVLSQHNLTYSVAIQNYLKNQLNEVGTSKLEKCCGLEELLEINQQNADHREYRSNEMHKLFFLIKDSEDVNALVHYRDYIEPNTILLDTNKYRAAYPDLESVRYLCELQENAISKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5V1</accession>
    <name>R6Y5V1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00258</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000401">
        <property type="protein sequence ID" value="CDD31323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31323">
        <property type="protein sequence ID" value="CDD31323"/>
        <property type="gene ID" value="BN815_00258"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="272" mass="30425" checksum="408B11940228DD62" modified="2013-07-24" version="1">MFLLSGQGTAKEKRALLTELAAIPNDEPLAVVAIGKYAGEGFDLPRLDVLLLTMPVVWKGTLTQYTGRLHRATPGKREVLLYDYVDFRVPMLEQQYRKRLRSYAALAYTVRGTIGDSNPNTLQPSQTESSAFIELSDFSHLLAQDLDATSKEALFCVPSLSAQSVHRMTPILQRLQHRGVNVQVYLPQPALFRSKIQPKITANVTILQQAGISVVFSQNHLSNFCVLDQHLVWYGGLNPLGWMPAEESNLRIVSPEISAELVDFLRRILPKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y608</accession>
    <name>R6Y608_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">[Ribosomal protein S18]-alanine N-acetyltransferase</fullName>
            <ecNumber evidence="1">2.3.1.266</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00309</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acetylates the N-terminal alanine of ribosomal protein S18.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + N-terminal L-alanyl-[ribosomal protein bS18] = CoA + H(+) + N-terminal N(alpha)-acetyl-L-alanyl-[ribosomal protein bS18]</text>
            <dbReference type="Rhea" id="RHEA:43756"/>
            <dbReference type="Rhea" id="RHEA-COMP:10676"/>
            <dbReference type="Rhea" id="RHEA-COMP:10677"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:64718"/>
            <dbReference type="ChEBI" id="CHEBI:83683"/>
            <dbReference type="EC" id="2.3.1.266"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acetyltransferase family. RimI subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.266" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31378">
        <property type="protein sequence ID" value="CDD31378"/>
        <property type="gene ID" value="BN815_00309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006474">
        <property type="term" value="P:N-terminal protein amino acid acetylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006464">
        <property type="entry name" value="AcTrfase_RimI/Ard1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01575">
        <property type="entry name" value="rimI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="17753" checksum="D26FFB02631C14E1" modified="2013-07-24" version="1">MEIVRLQKEHCEILAELEKLCFSHPWSQRAIEDEVHNPNAYFVTAVDGDKILGYGGMHCTHQECYVDNIAVFGHHRKKGVGTAIVLALVHEAQRRGAEYISLEVRPSNRPAVGLYTKLGFLEEGRRRNFYNDPTEDALILTRRFQKEARHDSIGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y627</accession>
    <name>R6Y627_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GP-PDE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01130</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000142">
        <property type="protein sequence ID" value="CDD29350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29350">
        <property type="protein sequence ID" value="CDD29350"/>
        <property type="gene ID" value="BN815_01130"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="1"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="167" mass="17621" checksum="F0CDBBDEAB8F7F44" modified="2013-07-24" version="1">MVIGHRGCIYETENTLAAVRAAGDYGAQYAEIDVQLSADGVPVVLHDGNLWRLAGENRSVADLTAEELTSLPLLPTGYGQAGEHIPTLEQALQQAGFPLSIVGVQLGVPLAARLFQRRDAPGEIAAQAVGQLYLYDVCFPVFSVGRGHEPVGAAGQRLAHGDVPLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y680</accession>
    <name>R6Y680_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamate synthase alpha subunit domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000145">
        <property type="protein sequence ID" value="CDD29395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29395">
        <property type="protein sequence ID" value="CDD29395"/>
        <property type="gene ID" value="BN815_01141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002489">
        <property type="entry name" value="Glu_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036485">
        <property type="entry name" value="Glu_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01493">
        <property type="entry name" value="GXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69336">
        <property type="entry name" value="SSF69336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GXGXG" evidence="1">
        <location>
            <begin position="9"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="218" mass="23704" checksum="F2F9D7E78739A446" modified="2013-07-24" version="1">MQTQARFALGQRYIAAGAGEGFYSVDQVPGNALGAYLDGATVEVFCNAQDATGDTMNGGEIIVHGSSGDATGYAMRGGSIYIERDAGYRCGIHMKEYQQKVPAIVIGGRCGSFLGEYQAGGTIVVLGIGWEDRCPVGNFCGTGMHGGRIYLRTTHLPPDLPAQVVVSQATEEDISHLRPLVEEYCRRFQVEKEPLLASHYYVLRPNTKNPYKQLYVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y696</accession>
    <name>R6Y696_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01144</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29410">
        <property type="protein sequence ID" value="CDD29410"/>
        <property type="gene ID" value="BN815_01144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046169">
        <property type="entry name" value="DUF6171"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19668">
        <property type="entry name" value="DUF6171"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9654" checksum="7C55131C6F483CEC" modified="2013-07-24" version="1">MTQRVCKRCLLRELDGTYFQSIYEYIQNLPPQWKADQETYAHRLALCKACGHLVNGMCELCGCFVEVRAAKINQHCAETAQRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6R4</accession>
    <name>R6Y6R4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Transcription termination/antitermination protein NusG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nusG</name>
        <name evidence="8" type="ORF">BN815_00434</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Participates in transcription elongation, termination and antitermination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the NusG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31653">
        <property type="protein sequence ID" value="CDD31653"/>
        <property type="gene ID" value="BN815_00434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00948">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006645">
        <property type="entry name" value="NGN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043425">
        <property type="entry name" value="NusG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001062">
        <property type="entry name" value="Transcrpt_antiterm_NusG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015869">
        <property type="entry name" value="Transcrpt_antiterm_NusG_bac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265">
        <property type="entry name" value="PTHR30265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265:SF2">
        <property type="entry name" value="PTHR30265:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02357">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00338">
        <property type="entry name" value="NUSGTNSCPFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00738">
        <property type="entry name" value="NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82679">
        <property type="entry name" value="SSF82679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00922">
        <property type="entry name" value="nusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01014">
        <property type="entry name" value="NUSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="3 5 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="NGN" evidence="7">
        <location>
            <begin position="4"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="19711" checksum="C81500D218CD5A9C" modified="2013-07-24" version="1">MAEEAKWYVVHTYSGYENKVASNLEKTVENRQLQELIQEIRVPTEKVTEITEAGKRKEVERKIFPGYVIVKMVMTDESWYAVRNIRGCTGFVGPSSKPIPLTEDEVARLGIENKEVEVSYKVGDSVNIVDGPLEGFIGTVEEMDVEKNRVRVTVSMFGRETPVELELDQAEPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y762</accession>
    <name>R6Y762_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00514</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27139">
        <property type="protein sequence ID" value="CDD27139"/>
        <property type="gene ID" value="BN815_00514"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437448" description="4Fe-4S ferredoxin-type domain-containing protein" evidence="4">
        <location>
            <begin position="27"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="18168" checksum="BCAC7DAF52CE6E9D" modified="2013-07-24" version="1">MKKLAVRNLRLCTKDCLCLYVCPVGATDTENSVIDVTKCIGCGVCAGACPSGAISMVPVEYPPQQKKELSVLAQAQALTGNKAREEQMARQLAQVVQAPGLYRLLKAVERSARLVQEDLHRESGYMLPQSKNAHDLLKQLLENPPTPEFPREAAQALLEKLPQNEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y794</accession>
    <name>R6Y794_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01259</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29770">
        <property type="protein sequence ID" value="CDD29770"/>
        <property type="gene ID" value="BN815_01259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="25859" checksum="C5BA95460354A2AA" modified="2013-07-24" version="1">MPHFIEFHDVCKYYTMGENRIAAADHISFYVDQGEFCIIVGPSGAGKTTVLNMLGGMDSCDEGEILLDGSKISEYNAKQLTTYRRYDVGFVFQFYNLVQNLTALENVELASEICKDPLDAKETLLEVGLGERLNNFPAQLSGGEQQRVAIARALAKNPKILLCDEPTGALDYNTGKAVLQLLQDTCRKTGRTVIVITHNSALTAMADRVIRIKSGKAISNDVNKHPTPVEEIEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7J0</accession>
    <name>R6Y7J0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type-4 uracil-DNA glycosylase</fullName>
            <ecNumber evidence="3">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01284</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29885">
        <property type="protein sequence ID" value="CDD29885"/>
        <property type="gene ID" value="BN815_01284"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005273">
        <property type="entry name" value="Ura-DNA_glyco_family4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00758">
        <property type="entry name" value="UDG_fam4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="8" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="9">
        <location>
            <begin position="29"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="192" mass="21481" checksum="D7F5C8196F915D45" modified="2013-07-24" version="1">MISHWNELEETCLACQKCSLCETRHHVVFGVGNPKAQVMFVGEGPGENEDLQGEPFVGRGGQLLDKMLAAVDLDRHTNIYITNIVKCRPPHNRDPLPQEQEACIGYLRNQFALLRPKILVCLGRIAGQKLIKPDLKITKEHGIFFDKGGTLMMATLHPAALLRNPAQKPAAFEDYLKLRQKIDELGCDIAKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7R0</accession>
    <name>R6Y7R0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">D-3-phosphoglycerate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.1.399</ecNumber>
            <ecNumber evidence="7">1.1.1.95</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">2-oxoglutarate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_01322</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(2R)-3-phosphoglycerate + NAD(+) = 3-phosphooxypyruvate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:12641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="EC" id="1.1.1.95"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:49612"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.399"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.399" evidence="6"/>
    <dbReference type="EC" id="1.1.1.95" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29950">
        <property type="protein sequence ID" value="CDD29950"/>
        <property type="gene ID" value="BN815_01322"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="13">
        <location>
            <begin position="319"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00021582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD29950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="388" mass="41400" checksum="80DEF68ED6673D74" modified="2013-07-24" version="1">MYKVLCLNKISPVGTKRFGEAYTFSPEMENPQGILVRSASMHDMELGENLLAIARAGAGVNNIPVDACTEKGIVVFNTPGANANAVKELVLCALFLTSRKIAPALDWVKTLKGQGDQVEKLIEKGKGQFAGPEIQGKALGVVGLGAIGILVANAASQLGMEVYGYDPYLSVEHAWRLSSAVHLSPSLDEVYQKCDYITLHLPQTKDTKGMVNGESLQKMKDGVRILNFARGALVDTDALLEALGQGKVAAYATDFPADAMLGVEGVVALPHLGASTPESEDNCAVMAVDQMKDYLENGNILNAVNLPSISMAREPGTRRICVIHRNVPNTIAMFAATCGDAGINIENMQSKSRGEYAYTILDVSGELSPAAVEALRGLEPIVKVRVIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y833</accession>
    <name>R6Y833_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00633</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000044">
        <property type="protein sequence ID" value="CDD27459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27459">
        <property type="protein sequence ID" value="CDD27459"/>
        <property type="gene ID" value="BN815_00633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029470">
        <property type="entry name" value="PDDEXK_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14281">
        <property type="entry name" value="PDDEXK_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="8822" checksum="71C07EF9CD1B9AC8" modified="2013-07-24" version="1">MERNKQLYEHLFQAIWEQLGSGPARTEENDAFNIFKALGIADKEVLICRLLGELLDPKGSHGSGAKPLSLFLEQLRIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y836</accession>
    <name>R6Y836_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30075">
        <property type="protein sequence ID" value="CDD30075"/>
        <property type="gene ID" value="BN815_01362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12982" checksum="6698F274484A637C" modified="2013-07-24" version="1">MDREVEALAKETMLAVDRAEQQAQETVRHAQEEAQRLRQDAAAKGQQLIEAAEKEAQKRAGILYGVAKADGEKRKAAIQRECQEEQEQLRALARSRQGQVARAAERIVLGHPRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8B6</accession>
    <name>R6Y8B6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GTPase Obg</fullName>
            <ecNumber evidence="6">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">GTP-binding protein Obg</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">obg</name>
        <name evidence="10" type="ORF">BN815_01415</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30170">
        <property type="protein sequence ID" value="CDD30170"/>
        <property type="gene ID" value="BN815_01415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01898">
        <property type="entry name" value="Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.210.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01454">
        <property type="entry name" value="GTPase_Obg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014100">
        <property type="entry name" value="GTP-bd_Obg/CgtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036346">
        <property type="entry name" value="GTP-bd_prot_GTP1/OBG_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006074">
        <property type="entry name" value="GTP1-OBG_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006169">
        <property type="entry name" value="GTP1_OBG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036726">
        <property type="entry name" value="GTP1_OBG_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045086">
        <property type="entry name" value="OBG_GTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015349">
        <property type="entry name" value="OCT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11702">
        <property type="entry name" value="PTHR11702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09269">
        <property type="entry name" value="DUF1967"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01018">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102741">
        <property type="entry name" value="SSF102741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82051">
        <property type="entry name" value="SSF82051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02729">
        <property type="entry name" value="Obg_CgtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03595">
        <property type="entry name" value="Obg_CgtA_exten"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00905">
        <property type="entry name" value="GTP1_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51883">
        <property type="entry name" value="OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51881">
        <property type="entry name" value="OCT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Obg" evidence="9">
        <location>
            <begin position="1"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="OBG-type G" evidence="7">
        <location>
            <begin position="158"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="domain" description="OCT" evidence="8">
        <location>
            <begin position="345"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="164"/>
            <end position="171"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="189"/>
            <end position="193"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="211"/>
            <end position="214"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="281"/>
            <end position="284"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="309"/>
            <end position="311"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="423" mass="46259" checksum="8C1E65B9C92F854F" modified="2013-07-24" version="1">MFIDTAKIKIKAGDGGDGAVSFHREKYVAAGGPDGGDGGRGGSVVFQVDDNLSTLADFRYKRKYAAQRGENGRGNRCFGKSAPDLVISVPRGTLIKDAETGRLLADMSGDEPQVIAKGGKGGWGNTHFATPTRQVPRFAKPGTPGEELEVQLELKLLADVGLVGFPNVGKSTLISVVSQAKPNIANYHFTTLTPVLGVVTMPQGKSFVMADIPGLIEGAWEGVGLGHQFLRHVERCRLLIHVVDVAGSEGRDPKEDFAVINRELEKFNPDLAQRPMLVAGNKCDLATEEQIADFQAFVEGQGYTFFPLMAPIREGVDPLLNKVLEELSKLPPIRRYEAEAPVLQPIEELQRGQVDIQEQDGVYFVKAPWLLKTLNTINFDDNESLQYFQRVLIETGVIDALREAGCQEGDTVDLYDLEFDFVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8H8</accession>
    <name>R6Y8H8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Mg chelatase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01473</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Mg-chelatase subunits D/I family. ComM subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30230">
        <property type="protein sequence ID" value="CDD30230"/>
        <property type="gene ID" value="BN815_01473"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032508">
        <property type="term" value="P:DNA duplex unwinding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045006">
        <property type="entry name" value="CHLI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001208">
        <property type="entry name" value="MCM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004482">
        <property type="entry name" value="Mg_chelat-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025158">
        <property type="entry name" value="Mg_chelat-rel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000523">
        <property type="entry name" value="Mg_chelatse_chII-like_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039">
        <property type="entry name" value="PTHR32039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32039:SF7">
        <property type="entry name" value="PTHR32039:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01078">
        <property type="entry name" value="Mg_chelatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13335">
        <property type="entry name" value="Mg_chelatase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01657">
        <property type="entry name" value="MCMFAMILY"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00368">
        <property type="entry name" value="TIGR00368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="209"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="508" mass="55665" checksum="F757DE7601D0D995" modified="2013-07-24" version="1">MVEKTYSMGLYGLEAFPVEVEADLSQGLPAFELVGLPDAAVKESRDRVRSALKNCGFEFPVSRITMNLAPADKKKEGPIYDLPLLVSLLKASRQLCCHTEDAIFLGELSLSGELRPIRGLLPMADKAREEGFKRLYVPAENAGEGAVIQGLTVYGIRDVRQLVDHLQGMLELTPAVPSYGETEALEPLDFADVKGQPEAKRALEIAASGCHNVLLIGPPGSGKSMLAKRLPTILPEMTFEESLETTKIHSIRGKLPAGVSLLRTRPFRAPHHTISTAGLAGGGPSPQPGEISLAHNGVLFLDELPEFARPAMEVLRQPLEDGKVTISRVGGTTSYPSRFMLVAAMNPCPCGYFGHPTHPCLCHPHAVERYMGKVSGPLLDRIDLHIEVDPVAFSELSSTKKEESSAQIRERVSAARHRQQQRFAGRGYACNGDIPDSQLQEMCQTTEAADRLLQLAFERFGFSARTYSRVLKVARTIADLEGSEKIDSSHAAEAVQYRTLDRKYWLQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8L2</accession>
    <name>R6Y8L2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">30S ribosomal protein S21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsU</name>
        <name evidence="7" type="ORF">BN815_00670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bS21 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27609">
        <property type="protein sequence ID" value="CDD27609"/>
        <property type="gene ID" value="BN815_00670"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00358">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001911">
        <property type="entry name" value="Ribosomal_S21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018278">
        <property type="entry name" value="Ribosomal_S21_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038380">
        <property type="entry name" value="S21_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21109">
        <property type="entry name" value="PTHR21109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01165">
        <property type="entry name" value="Ribosomal_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00976">
        <property type="entry name" value="RIBOSOMALS21"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00030">
        <property type="entry name" value="S21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01181">
        <property type="entry name" value="RIBOSOMAL_S21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="58" mass="6922" checksum="0C564AE73D40FAC9" modified="2013-07-24" version="1">MAEIRLKENESLDSALRRFKKQCARAGVIQEVRKREAYEKPSVKRKKKSEAARKRKYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y939</accession>
    <name>R6Y939_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">EDD domain protein DegV family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30430">
        <property type="protein sequence ID" value="CDD30430"/>
        <property type="gene ID" value="BN815_01651"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003797">
        <property type="entry name" value="DegV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043168">
        <property type="entry name" value="DegV_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02645">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00762">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51482">
        <property type="entry name" value="DEGV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="31983" checksum="5D6D292EF8B5FA00" modified="2013-07-24" version="1">MNNRNVILSADSTCDLGEELKARYNVHYYPFHIILEGKQYQDNVDIQVDQIYQAYYDRKALPQTAAINVGEYVDYFRPFVEAGFDVIHFCLGGALSSAQKNCQLAAQEPELAGHVFPIDSCSLSTGIALQVLEAGERIRAGMPAGEIAKEMQAIVPHCHASFILDTLEFMKAGGRCSSLVAFGANLLSLKPCIEVDNADGSMHVGKKYRGTLKKVLPQYVKDKLAQYPSIKRDHLFITYSTIDPSYVELVRQTVEETMEFKEIHTTNASCTIACHCGPNTLGILFETE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y944</accession>
    <name>R6Y944_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">4HBT domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01656</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000243">
        <property type="protein sequence ID" value="CDD30435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30435">
        <property type="protein sequence ID" value="CDD30435"/>
        <property type="gene ID" value="BN815_01656"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003230">
        <property type="entry name" value="YbgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="2">
        <location>
            <begin position="21"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="15976" checksum="645E1D6785998945" modified="2013-07-24" version="1">MEPVLYEHKVQYYETDKMDCVHHSNYIRWFEEARTYLMDQGGFGYAQMEALGVMSPVLKAQAEYRTMARFGETVVIETRAEGYTGTRIAFTYIVRDKETGVLRCQGRTEHCFLGPQGRPVSLKKACPAYHQKILEHLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9U0</accession>
    <name>R6Y9U0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00148</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000301">
        <property type="protein sequence ID" value="CDD30675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30675">
        <property type="protein sequence ID" value="CDD30675"/>
        <property type="gene ID" value="BN815_00148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="147"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="269"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="80"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="33824" checksum="C6DF4435E63EE724" modified="2013-07-24" version="1">MAKNPNRIKEPLFDRVFYIVTFIILLAILVIIIYPLWFVLMASCSDAQYVNNGDILLYPKGFTTLGYERTIANMNIWIGYGNTILYTVGGTVVGTFCTVVAGYALSRKDLPGHGIIMKLFVFTMYFQGGMIPFYIIINNLGLMNTRFLMIIISCITVYNIILVRSYFANSLPHDLFEAASIDGCSNARFIFQIAIPLSKAIIAVIALYVAVSYWNSYFYPMIFLTDRYKFPLQLWLRELLLVANMNAADSGTDPTAAAQLQTMASVMKYSTIVVSTVPIICVYPFIQKYFVQGVMIGSIKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Z8</accession>
    <name>R6Y9Z8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Tagatose-6-phosphate kinase</fullName>
            <ecNumber evidence="5">2.7.1.144</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00150</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + D-tagatofuranose 6-phosphate = ADP + D-tagatofuranose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12420"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58694"/>
            <dbReference type="ChEBI" id="CHEBI:58695"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.144"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + beta-D-fructose 1-phosphate = ADP + beta-D-fructose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14213"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:138881"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.56"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Carbohydrate metabolism; D-tagatose 6-phosphate degradation; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-tagatose 6-phosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the carbohydrate kinase PfkB family. LacC subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the carbohydrate kinase pfkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.144" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000312">
        <property type="protein sequence ID" value="CDD30735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30735">
        <property type="protein sequence ID" value="CDD30735"/>
        <property type="gene ID" value="BN815_00150"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00704">
        <property type="reaction ID" value="UER00715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008662">
        <property type="term" value="F:1-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009024">
        <property type="term" value="F:tagatose-6-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001059">
        <property type="term" value="P:D-tagatose 6-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005988">
        <property type="term" value="P:lactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01164">
        <property type="entry name" value="FruK_PfkB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022463">
        <property type="entry name" value="1-PFruKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017583">
        <property type="entry name" value="Tagatose/fructose_Pkinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000535">
        <property type="entry name" value="1PFK/6PFK/LacC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03168">
        <property type="entry name" value="1-PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03828">
        <property type="entry name" value="pfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0423">Lactose metabolism</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="6">
        <location>
            <begin position="30"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005380"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="310" mass="32268" checksum="E7E3099B16092390" modified="2013-07-24" version="1">MMVTTVTLNPALDYHITLPGLAPGEIQWFSHSSFSPGGKGINVSLLLSSLGVETRALGIAAGFTGREIARLLEERGCPADMVFLEEGCSRVNVKLQTPGGEETAFNGPGPDIPPQAVAQLLGKLSTLGPEDVLVLSGSLPQGLPETAFPQLLEAARRAGAKLVVDMAGDPLLASLPYHPFLIKPNLEELCQLFQAEGPLTPLEAKEYAKELQRMGARNVVVSLGEKGALLLEESGRCLGCRSPRGQAVSTVGAGDSLVAGFLYGCQLHGTLEGGLKWGVAAGAATAFQEGIATGSQVKAQFPAVGNPHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA38</accession>
    <name>R6YA38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01984</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30780">
        <property type="protein sequence ID" value="CDD30780"/>
        <property type="gene ID" value="BN815_01984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="219" mass="24534" checksum="BFBD7C5D8489BF51" modified="2013-07-24" version="1">MRTVFHTLARQHRRCAALFYSGDSLRFPAYNGNEMPSWYTIIFFVYGRVVYKPRCLPLFFLCGLLRQFARGRGMISPQCPGTPRVKLHKKSRLFSDRGQSLFYGLRFSANLFFSCGVLRGCVGVEGAFPCGGIPGTGKKSGFPGLCQPVAHACKPMPNPAIFRFKICGFPGVAATTHAFSAGRTYQEFPARLHELMFVQENRERAVTLLWGSAPLFILF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA39</accession>
    <name>R6YA39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7 8">Elongation factor Tu</fullName>
            <shortName evidence="7">EF-Tu</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tuf</name>
        <name evidence="10" type="ORF">BN815_00771</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000078">
        <property type="protein sequence ID" value="CDD28124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28124">
        <property type="protein sequence ID" value="CDD28124"/>
        <property type="gene ID" value="BN815_00771"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01884">
        <property type="entry name" value="EF_Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03697">
        <property type="entry name" value="EFTU_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00118_B">
        <property type="entry name" value="EF_Tu_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041709">
        <property type="entry name" value="EF-Tu_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033720">
        <property type="entry name" value="EFTU_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004541">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004160">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03143">
        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00485">
        <property type="entry name" value="EF-Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="10"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="81"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="136"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="400" mass="44177" checksum="FDF962805E84942A" modified="2013-07-24" version="1">MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLAMKGDAQFMDYANIDKAPEERERGITINTAHVEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDQVDDPELLELVEMEIRDLLNEYEFPGDDTPIIKGSALAALESTSTDPNAPEYKCILELMDAVDEYIPTPERKADQPFLMPVEDVFTITGRGTVATGRVERGVLKMSEEVEIVGLADETRKSVVTGIEMFRKLLDFAEAGDNIGVLLRGIQRTDIERGQVLAKPGTIHPHTKFKGQVYVLTKDEGGRHTPFFNNYRPQFYFRTTDVTGVISLPEGTEMCMPGDNVVMDVELITPIAIEEGLRFAIREGGRTVGSGVVTAINS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN1</accession>
    <name>R6YAN1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Phosphoribosylamine--glycine ligase</fullName>
            <ecNumber evidence="2 7">6.3.4.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">GARS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glycinamide ribonucleotide synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphoribosylglycinamide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">purD</name>
        <name evidence="10" type="ORF">BN815_00824</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5-phospho-beta-D-ribosylamine + ATP + glycine = ADP + H(+) + N(1)-(5-phospho-beta-D-ribosyl)glycinamide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17453"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GARS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.13" evidence="2 7"/>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28334">
        <property type="protein sequence ID" value="CDD28334"/>
        <property type="gene ID" value="BN815_00824"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004637">
        <property type="term" value="F:phosphoribosylamine-glycine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00138">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020561">
        <property type="entry name" value="PRibGlycinamid_synth_ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000115">
        <property type="entry name" value="PRibGlycinamide_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020560">
        <property type="entry name" value="PRibGlycinamide_synth_C-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037123">
        <property type="entry name" value="PRibGlycinamide_synth_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020559">
        <property type="entry name" value="PRibGlycinamide_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020562">
        <property type="entry name" value="PRibGlycinamide_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43472">
        <property type="entry name" value="PTHR43472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01071">
        <property type="entry name" value="GARS_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02843">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02844">
        <property type="entry name" value="GARS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01210">
        <property type="entry name" value="GARS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00877">
        <property type="entry name" value="purD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00184">
        <property type="entry name" value="GARS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="107"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="423" mass="44879" checksum="776531B84D8DF2A3" modified="2013-07-24" version="1">MKILVVGSGGREHAIVRKLKESPQVEAVLCAPGNGGISRDAACFPVNAMDKEGMLALAQEQQVDLVFVAPDDPLAAGMVDFLEAAGIPCFGPNAAAAQIEASKVFSKDLMKKYGIPTAGYEVFADPAAALEYIKAQGKYPAVIKADGLALGKGVVIAQNEEEAKAALHSIMEDKIFGESGAHVVVEEFLTGPEVSVLAFTDGKAMCPMVSSMDHKRAYDGDKGPNTGGMGTISPNPFYTEAVAQQCMERIFLPTMAAMNAEGRPFKGCLYFGLMLTPDGPKVIEYNSRFGDPETQVVLPRLQTDFAQIVEAVAKERLSELSIQWSEQASACVVMASGGYPGSYPKGIEIHGLDANGQAEGVTVYHAGTKLEDGKFLTNGGRVLGVTALGDTLEAALNKAYAAVENITFEGAMYRKDIGRTHQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBH7</accession>
    <name>R6YBH7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00888</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28589">
        <property type="protein sequence ID" value="CDD28589"/>
        <property type="gene ID" value="BN815_00888"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019277">
        <property type="entry name" value="DUF2304"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10066">
        <property type="entry name" value="DUF2304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="14020" checksum="2D7CEEF7BC092E54" modified="2013-07-24" version="1">MSWILRAELIVLALVAIVVVIHAVNRRVLQLKYSLIWLLISLCLVAAALFPKIAFAVTALVGIETPSNLIFFLAIIALLGICFSLTVIVSRQEARIKRLIQILSIEHNELKGSEEEEDAATERDNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBV7</accession>
    <name>R6YBV7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphate ABC transporter phosphate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00334</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31405">
        <property type="protein sequence ID" value="CDD31405"/>
        <property type="gene ID" value="BN815_00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425746" evidence="2">
        <location>
            <begin position="32"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="3">
        <location>
            <begin position="65"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="3">
        <location>
            <begin position="208"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="33160" checksum="CD9A16D4744D37F7" modified="2013-07-24" version="1">MKKVLSTLLALTLCASMLAGCGGNSNSSSSAADSSASEGSSSTSSTSSESSASESESSSEASAEGTSASGPITVVSREDGSGTRGAFVELIGVVDEEDNDMTTVDATISNSTEVVIQTVAGNTGAIGYISLGSLDDTVKGVNIDGVEPTAENIENGTYTVSRPFNVATKGELTNEAAQDFMNYIMSEEGQAIVAEDYIPVSGVEPFESNGASGTVTVSGSSSVSPLMQKLIEGYNTVNPNVEIELQTSDSTTGMTDAINGMSDIGMASRELKQEELDAGLVNTVIATDGIAIIVNNESPITDLTTEQVRDIYLGNITDWSELG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCF1</accession>
    <name>R6YCF1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00402</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31555">
        <property type="protein sequence ID" value="CDD31555"/>
        <property type="gene ID" value="BN815_00402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="49"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="26904" checksum="8EB7BBBE3170BEED" modified="2013-07-24" version="1">MRLWAVAVWLIVWQLGAMALGQEILLVSPVSVLLRLLELIPHWDFWGAILFSFWRITLGFLLACLAGTALGVLSSRFGPVRDLAAPLMGVIKSIPVASFVILVLIWVPSRNLSVVISFLMVTPIVYSNVLGGISSMDKKLTEMADVFAVPFPRRLRYLYLPQVAPFFRSACAVGLGLCWKAGVAAEVIGLPDGSIGERLYEAKVYLNTPDLFAWTVVIVLVSLVFEKLFLFLLDRLVARLERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCR6</accession>
    <name>R6YCR6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00449</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000444">
        <property type="protein sequence ID" value="CDD31695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31695">
        <property type="protein sequence ID" value="CDD31695"/>
        <property type="gene ID" value="BN815_00449"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="3"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="121"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="121"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="225" mass="24337" checksum="5D6B25DFDE2C3F05" modified="2013-07-24" version="1">MKTIAIIEDDQTIGDLLEEVLQKEGYQVERAYSGTEAVYLLSQQRPDLALLDLMLPGLSGEEVLPHLAGVPVIVVSAKVGVDDKVKLLLGGAADYLTKPFELPELLARIQVQLRKGSAPLSPVLRAGDVELDTASRQVTVSGAAVHLTKTEYAILKLLLQNPGQAVAKSVILERISLDTPDCTEYSLKQHVSNLRKKLREAGGKEYIQAVWGIGFRLDAEGAGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCT8</accession>
    <name>R6YCT8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01043</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000120">
        <property type="protein sequence ID" value="CDD29064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29064">
        <property type="protein sequence ID" value="CDD29064"/>
        <property type="gene ID" value="BN815_01043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="263"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="296"/>
            <end position="303"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="460" mass="50195" checksum="03909318B9993232" modified="2013-07-24" version="1">MISIDRVSFGYGEAQETLSQVSAAIAPGECVLLCGASGCGKTTVTKLINGLIPAFTPGCRLEGRVEVDGLDPGTTPMYELARKVGSVFQNPKSQFFNLDTDSELAFGLENEGRPPEEIRKRVADTVDALHLQELQARNIFSLSGGQKQLLAFGSVYAMGPEIFVLDEPTANLDQDAIARLHDQIAGLKRQGRTVVIAEHRLYFLTDLIDRALYLRDGVLERTFTRKQFFALTDGEREALGLRTLIPADCTLSTVVPAGAKEGLSVEGLTCAYRKEPPVFQALSFSARPGEVVAITGPNGVGKTTLSRCLCGLIREQAGQIALNGRPLNRKKRQKAAFCVMQDVNHQLFSDSVWGECRMSAPDAPDSSLKGVLDSLHLLPFRERHPMSLSGGQKQRLAVATALLSEKPILIFDEPTSGLDYARMVEVSGVIRSLAQQGRIVLVVTHDQEFLQRACDRVLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCZ4</accession>
    <name>R6YCZ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator PadR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31775">
        <property type="protein sequence ID" value="CDD31775"/>
        <property type="gene ID" value="BN815_00472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="14"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13407" checksum="887A1F47FE3B201C" modified="2013-07-24" version="1">MDAQLKKGIVEVCVLVALQERDSYGYQIIKDVSPIVEISESTLYPILKRLEAGGCVTTYSMEHNSRLRKYYRLTEVGRQRIRDFLVEWQDVMRAYRYIAGSQTQGSAQNLEREGKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDJ8</accession>
    <name>R6YDJ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000144">
        <property type="protein sequence ID" value="CDD29369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29369">
        <property type="protein sequence ID" value="CDD29369"/>
        <property type="gene ID" value="BN815_01135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004557">
        <property type="term" value="F:alpha-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd14791">
        <property type="entry name" value="GH36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038417">
        <property type="entry name" value="Alpga-gal_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002252">
        <property type="entry name" value="Glyco_hydro_36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="612" mass="67887" checksum="5D9B5B6B8000A751" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF54</accession>
    <name>R6YF54_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable phosphoketolase</fullName>
            <ecNumber evidence="5">4.1.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01325</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the XFP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000185">
        <property type="protein sequence ID" value="CDD29974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29974">
        <property type="protein sequence ID" value="CDD29974"/>
        <property type="gene ID" value="BN815_01325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016832">
        <property type="term" value="F:aldehyde-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01403">
        <property type="entry name" value="Phosphoketolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023962">
        <property type="entry name" value="Phosphoketolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005593">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018969">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019790">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018970">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019789">
        <property type="entry name" value="Xul5P/Fru6P_PKetolase_ThDP_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31273">
        <property type="entry name" value="PTHR31273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03894">
        <property type="entry name" value="XFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09363">
        <property type="entry name" value="XFP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09364">
        <property type="entry name" value="XFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017245">
        <property type="entry name" value="Phosphoketolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS60002">
        <property type="entry name" value="PHOSPHOKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS60003">
        <property type="entry name" value="PHOSPHOKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="XFP_N" evidence="7">
        <location>
            <begin position="12"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="XFP_C" evidence="6">
        <location>
            <begin position="588"/>
            <end position="788"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF09363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="793" mass="90148" checksum="FFD1F9F00C05C25B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF64</accession>
    <name>R6YF64_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein HU-beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00551</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27241">
        <property type="protein sequence ID" value="CDD27241"/>
        <property type="gene ID" value="BN815_00551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0226">DNA condensation</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="9854" checksum="B6FF37AB09BA8E83" modified="2013-07-24" version="1">MNKSELIAEVATKAEITKKDADAAVTAVIDVITESLKQGEKVQLVGFGTFEVRERGARTGRDPRTNQEIQIPASKAPAFKAGKALKDTVNGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG07</accession>
    <name>R6YG07_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TIGR02453 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30279">
        <property type="protein sequence ID" value="CDD30279"/>
        <property type="gene ID" value="BN815_01513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012808">
        <property type="entry name" value="CHP02453"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015996">
        <property type="entry name" value="UCP028451"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36452">
        <property type="entry name" value="PTHR36452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09365">
        <property type="entry name" value="DUF2461"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028451">
        <property type="entry name" value="UCP028451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="28333" checksum="1B91C5D1F9148029" modified="2013-07-24" version="1">MDRPFSQKTLDFLFENRLHDSREWFAQHKKEYQELVIQPLRQLVMDLSPTMLELDPEFNTEPKVDKTICRVWRDTRYTKDPSLYRDHMWIIFKRGGRMHGTDHPGMYVEINQDGFSYGCGFYYASTAYMSCLRERILAGDGAFQAAQEAYLGQKVFSMEGDCYKRPRYGHRSPEEQLWLERRGISFTADSHDFPLLFSPQLPEKLAQDMRLLFPVYRFLESTAQEVLRRETEQGLWQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG91</accession>
    <name>R6YG91_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PDZ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01600</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30379">
        <property type="protein sequence ID" value="CDD30379"/>
        <property type="gene ID" value="BN815_01600"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007549">
        <property type="entry name" value="DUF512"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045375">
        <property type="entry name" value="Put_radical_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04459">
        <property type="entry name" value="DUF512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19238">
        <property type="entry name" value="Radical_SAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDZ" evidence="1">
        <location>
            <begin position="1"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="451" mass="50998" checksum="CF7E1C7952D94C81" modified="2013-07-24" version="1">MAVTINGVAEKSRAQRVGIQPGDVLVAINGHEIIDVLDYRFFETERELRLSLRRGGESYEVELVKPQYAELGLEFETYLMDKQRSCRNKCVFCFIDQLPPGMRETLYFKDDDDRLSFLFGNYITLTNIDDREVDRILQMHISPINVSVHTMDPQLRCTMMHNRFAGDSLRHLYRLAEGGIHLNCQIVLCPGVNDGPALEHTLEEFWSLGEGLLSVACVPVGLTRYREGLYPLAPFNRQTAGEALDILERWGARWKAERGARTVYASDELYLLAGRPIPPLEFYEDFPQIENGVGMLRNLQDEFDWALEDLELPDIPRRVTIPTGECGFQFLNQLLDGLRRKCHNISIDLLPVHNDFFGGTVNVTGLLTGQDILKNLRGRDLGDEVLLATNMMKAGEDIFLDDMTREELSAALGVPCRRVGSTGEALVCAICGLPEPETPGFNPYEGSWEHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG96</accession>
    <name>R6YG96_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00660</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27576">
        <property type="protein sequence ID" value="CDD27576"/>
        <property type="gene ID" value="BN815_00660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8183" checksum="3D4B2CA362FD3954" modified="2013-07-24" version="1">MTIQFPHMPEQVTRSEAEIIDYISNNPREFLQDSIGAVSQKLGVSGTTLSRFARRVGCGDYKGLKRLVSQQEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGF3</accession>
    <name>R6YGF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000246">
        <property type="protein sequence ID" value="CDD30444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30444">
        <property type="protein sequence ID" value="CDD30444"/>
        <property type="gene ID" value="BN815_00134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="9017" checksum="541B0577ABC45415" modified="2013-07-24" version="1">MRLPKGISISVIRATVRRPTWLPMRTISRARARESSKVFIKAPEPIFTSSKMASAPAAIFLDMMLEAISGKLSTVAVTSRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGM1</accession>
    <name>R6YGM1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SmtA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01715</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000266">
        <property type="protein sequence ID" value="CDD30499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30499">
        <property type="protein sequence ID" value="CDD30499"/>
        <property type="gene ID" value="BN815_01715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="9193" checksum="6B6F54420DADC28F" modified="2013-07-24" version="1">MQDGTPRESGYWYPEKQPGDRFPQGELLGRVERTLQAITAPFDGVVLYQTHILGVSQGMPLLAYGKLRAEGGLSRQETERML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGW9</accession>
    <name>R6YGW9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01810</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30599">
        <property type="protein sequence ID" value="CDD30599"/>
        <property type="gene ID" value="BN815_01810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="10"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="342" mass="37603" checksum="48CC2F61E0B90C5C" modified="2013-07-24" version="1">MAKNMKNKVLDVNDLHVSFDTYAGEVQAVRGVTFQLHEGEVLAIVGESGCGKSVTAQTIMKLNPMPPARIPQGEVHLGEHDIVKASEKEMQQLRGKEVSMIFQDPMTCLNPTKQVGKQIVEAIRHHQHLSAKEAKEQAIKYLKLVNIPNAEERAKQYPHEFSGGMRQRAMIAMALSCNPKVLIADEPTTALDVTIQAQIMDLLAEIKEETNTAIILITHDLGVVAGMADRVAVMYAGKIVETGAVEDIFYRNAHPYTQALLKSLPTVDSDRTERLVSIAGTPPDLLNPPKGCAFAARCKHCMKICQEEQPPEFTVGEGHVASCWLLHPDCPSAEERGEKIVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH15</accession>
    <name>R6YH15_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01861</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30654">
        <property type="protein sequence ID" value="CDD30654"/>
        <property type="gene ID" value="BN815_01861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="10443" checksum="BA452B71F9D254AE" modified="2013-07-24" version="1">MSKSTPSTASMPWARASSPIWAKLPRTRTDWGYFPSLSPAARMASGSWSMESRRPVVSCFTMASEWPPPPMVPSMYRPSGRMAKDCIVSSNNTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH99</accession>
    <name>R6YH99_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">von Willebrand factor type A domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01958</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30754">
        <property type="protein sequence ID" value="CDD30754"/>
        <property type="gene ID" value="BN815_01958"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425445" evidence="1">
        <location>
            <begin position="28"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="354"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="532" mass="58031" checksum="2AA9791B9F507252" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHB5</accession>
    <name>R6YHB5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavodoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01978</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30774">
        <property type="protein sequence ID" value="CDD30774"/>
        <property type="gene ID" value="BN815_01978"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12682">
        <property type="entry name" value="Flavodoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="7383" checksum="A9E45A91B643A107" modified="2013-07-24" version="1">MLIYSFLESYDWEGKTLIPFCTSGGSGFGRSLDNLPASVPSATILEGFHVNGSSVDGAAEDVAAWLSGLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHI4</accession>
    <name>R6YHI4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="7">Glutamate N-acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.35</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">Ornithine acetyltransferase</fullName>
                <shortName evidence="7">OATase</shortName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="7">Ornithine transacetylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">Amino-acid acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.1</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">N-acetylglutamate synthase</fullName>
                <shortName evidence="7">AGSase</shortName>
            </alternativeName>
        </domain>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="primary">argJ</name>
        <name evidence="8" type="ORF">BN815_02041</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate + N(2)-acetyl-L-ornithine = L-ornithine + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:15349"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.3.1.35"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Heterotetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.35" evidence="7"/>
    <dbReference type="EC" id="2.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30854">
        <property type="protein sequence ID" value="CDD30854"/>
        <property type="gene ID" value="BN815_02041"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02152">
        <property type="entry name" value="OAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01106">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042195">
        <property type="entry name" value="ArgJ_beta_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="PTHR23100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00120">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_5023377920" description="Arginine biosynthesis bifunctional protein ArgJ alpha chain" evidence="7">
        <location>
            <begin position="1"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023377921" description="Arginine biosynthesis bifunctional protein ArgJ beta chain" evidence="7">
        <location>
            <begin position="187"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="399"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="404"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="114"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="7">
        <location>
            <begin position="186"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="404" mass="41646" checksum="871480E037CBA5B0" modified="2013-07-24" version="1">MKMIEGGVTAAQGFVAGGIHCGIRKNKSKPDLAMIYSEKPCAAAAVYTQNLVKGAPILVTQKNIADGAAKAVICNSGNANTCNADGVEKAQAMCDLAAQALGIEPQDVVVASTGVIGQVLPMEPIQAGIPELVKSLSAQGSHAAATAIMTTDTLPKEAAAEVEIGGKTVKVGGISKGSGMIHPNMATMLCFATTDCAISPAMLDKAIHQVTEKTFNMISIDGDTSTNDTFAILANGAAGNPEITAPGPDYDAFVQALEAVCRTLSKLMAGDGEGATKLLICQVDGAATLDMARTVAKSVICSTLFKAAMFGADANWGRVLCAIGYSGAAVDVNKIDVSFRSAKGQVDVCQNGAGIPFSEEEASLVLGEGEIEILIHLHMGQESAQAYGCDLTYDYVKINGDYRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHQ1</accession>
    <name>R6YHQ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF4179 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02091</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30929">
        <property type="protein sequence ID" value="CDD30929"/>
        <property type="gene ID" value="BN815_02091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025436">
        <property type="entry name" value="DUF4179"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13786">
        <property type="entry name" value="DUF4179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4179" evidence="2">
        <location>
            <begin position="58"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="538" mass="58189" checksum="5C7DD6687BD14E48" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHQ6</accession>
    <name>R6YHQ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00190</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000346">
        <property type="protein sequence ID" value="CDD30934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30934">
        <property type="protein sequence ID" value="CDD30934"/>
        <property type="gene ID" value="BN815_00190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="19384" checksum="FEBE153F42E4CB0B" modified="2013-07-24" version="1">MKVDTAAIDQEIVNYEKQLRQHYSIKSKLAEEIDSLDPDDRHYVRRKADLDDRLYRMYDKIEDTESLLIAARAKKQAIEAEKLTGDNIYKVLIYFEKLYGVMNEAERRQLIEALISEIQVYPERQANGQWLKSIKFKLPIIEEDMSISLDNEEQVETVALLSNRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHU4</accession>
    <name>R6YHU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Na(+)-transporting decarboxylase carboxyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02133</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30974">
        <property type="protein sequence ID" value="CDD30974"/>
        <property type="gene ID" value="BN815_02133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003379">
        <property type="entry name" value="Carboxylase_cons_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02436">
        <property type="entry name" value="PYC_OADA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="448"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="483" mass="53373" checksum="719CE2507492D43B" modified="2013-07-24" version="1">MAKNPLKIMDTILRDAHQSQAATRMKIEDMIPILPVLDSIGYWSLECWGGATFDVCMRFLNEDPWERLRTLKKGLPNTKLQMLLRGQNILGYRHYADDVVESFCKKSIENGIDVVRIFDALNDPRNMEAAMKFVKEYGGMVEAAISYTKSPVHSEDYFVKLAMKLEKMGADTICIKDMANLLLPYDAYSLVKKLKENVSVPIHLHTHNTTGTGDMTNLMAAQAGVDIVDCALSPLANGTSQPATESMVATLQGTSRDTGLDMAKLVEAAAHFRGVAEKLDINPKVLKVDVNTLLYQVPGGMLSNLISQLKQANAEDKYYAVLEEIPNVRKDFGYPPLVTPTSQIVGSQAVLNVLAGERYKMITKESKGLLRGEYGQLPGEVNEEVRKKAIGSDEVITCRPADLLEPEMDKLRAECKEKGLGHCEEDVLSYALFPQVAEKFLNWRDNPHKEEEAPAPAAAPAKAAPANNGPRTLIVEDMTNGVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHW5</accession>
    <name>R6YHW5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Fucosidase_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00060</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Alpha-L-fucosidase is responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28146">
        <property type="protein sequence ID" value="CDD28146"/>
        <property type="gene ID" value="BN815_00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004560">
        <property type="term" value="F:alpha-L-fucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016286">
        <property type="entry name" value="FUC_metazoa-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031919">
        <property type="entry name" value="Fucosidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000933">
        <property type="entry name" value="Glyco_hydro_29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10030">
        <property type="entry name" value="PTHR10030"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01120">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16757">
        <property type="entry name" value="Fucosidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001092">
        <property type="entry name" value="Alpha-L-fucosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00812">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Fucosidase_C" evidence="5">
        <location>
            <begin position="408"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="481" mass="55014" checksum="BE93A943F5410CAF" modified="2013-07-24" version="1">MSQRFEATFDSLRTYQCPEWFRDVKFGIWSHWGPQSVPMFGDWYARNMYIQGSPQNLYHVRHYGHPSKFGYKDICALWKAENFDPDELMDLYYRAGARYFVAQAMHHDNFFNYDSKIHPFNSVNIGPGKDICALWKAAADKHNMPFGLTEHLGASFSWWTTNKGSDSYGPYKGVPYDGNDPQYAQLYHANQEHVDPAKHGGPVQPWLTSNKEFQAKWFSVMKELVDKFHPNLLYSDSGLPFEEEGGGFQPGLDAVSYLYNDSIQVNGSNQAVYTQKDRRPEIYQVGVLDIEKSQLPGVQERPWQTDTCIGNWFYDAKQPYKHPDQIIEMLIDIVSKNGTMLLNVLQRPDGTIDDEARYILEELATWFPICGEAIYGTRPWRVFGEGDTRVTIDGFTENKTEWNSSDYRFTQKDGALYAFLMKAPESGVAVLKSLSPSEKVASVELLGAGPVEFVQSFGVLTVQLPEQLPTQYTNCLKIRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIF7</accession>
    <name>R6YIF7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">S1 RNA binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02328</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31184">
        <property type="protein sequence ID" value="CDD31184"/>
        <property type="gene ID" value="BN815_02328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="1">
        <location>
            <begin position="125"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="1">
        <location>
            <begin position="208"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="34602" checksum="BD2FC2E265887160" modified="2013-07-24" version="1">MQFHPEGHLIDTFENRAALQTPASLAEAMRDGKILEAKAVMCDSKHNLIVDLKFMRGLIPREEGALGIKDGTVRDIAILSRVNRPVCFLVEDFTRDEYGRITALLSRRAAQEKCREEFVRRLSPGDVIDARITHIEPFGVFADIGCGIVSLLPIDSISVSRIEHPRERFMVGMDIRAVVKCRESARVTLSHKELLGTWEENAARFRPGETVGGIIRSIESYGVFVELAPNLAGLAEVKENIYPGQQASVFIKSILPARMKVKLILIETFDPEPKRPQPPEYFFTGDHMAQFVYSPPQSDKYIATCFTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIP4</accession>
    <name>R6YIP4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00217</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31279">
        <property type="protein sequence ID" value="CDD31279"/>
        <property type="gene ID" value="BN815_00217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="8306" checksum="89917A5AD18A6379" modified="2013-07-24" version="1">MGTAEGNIAAGNATGNTGKKLEAAYEPENLMAYRVSLSLIDRLFSEGVLTAADRRKSYTIIAKRHGLSLDSIFTEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKF3</accession>
    <name>R6YKF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29001">
        <property type="protein sequence ID" value="CDD29001"/>
        <property type="gene ID" value="BN815_01020"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="22221" checksum="D676817B92F2E563" modified="2013-07-24" version="1">MARTAVRRVNEWDGPSMLKVYTPYTGTPAAPEGEAPDLQAYVRRIDRYTYGLGWLLCEIDHQTVGFCHLSEDPAAPEDLFTVEFQLYVKQGMCRRHIGTALWELMRDMLEMGNRRRVVCRVHRENQAALAFFQAMGFVPLEGKPPEEPEKLWLAYHLRPWDPAAPKPTKPYLVEAADYEAAREKAAALVDVSGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKJ3</accession>
    <name>R6YKJ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01041</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000119">
        <property type="protein sequence ID" value="CDD29051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29051">
        <property type="protein sequence ID" value="CDD29051"/>
        <property type="gene ID" value="BN815_01041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011733">
        <property type="entry name" value="CHP02185_IM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09605">
        <property type="entry name" value="Trep_Strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02185">
        <property type="entry name" value="Trep_Strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="21974" checksum="1956DE25AA14DB78" modified="2013-07-24" version="1">MSEPIKRRGMSGKDVITVGIFSAIYFVINFAFMLLGGLHPLLWILMPGFIALFTGIPYLMMCAKVQKVGSVLLMGLITGLIYYVTGQFTIVILVTFVLACGLAELTRGITHYHSMAGNLVSFVLFSVGMVGSPLPIWLMREDFLRQITEQGMPADYVNTLEALSSTGMLVVLFLAPIVGAIIGGFIARAMFRKHFEKAGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMU6</accession>
    <name>R6YMU6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Orotidine 5'-phosphate decarboxylase</fullName>
            <ecNumber evidence="7">4.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">OMP decarboxylase</fullName>
            <shortName evidence="7">OMPDCase</shortName>
            <shortName evidence="7">OMPdecase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pyrF</name>
        <name evidence="9" type="ORF">BN815_01307</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>H(+) + orotidine 5'-phosphate = CO2 + UMP</text>
            <dbReference type="Rhea" id="RHEA:11596"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="4.1.1.23"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the OMP decarboxylase family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.23" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29921">
        <property type="protein sequence ID" value="CDD29921"/>
        <property type="gene ID" value="BN815_01307"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004590">
        <property type="term" value="F:orotidine-5'-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01215">
        <property type="entry name" value="OMPdecase_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018089">
        <property type="entry name" value="OMPdecase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011995">
        <property type="entry name" value="OMPdecase_type-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001754">
        <property type="entry name" value="OMPdeCOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43375">
        <property type="entry name" value="PTHR43375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00215">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00934">
        <property type="entry name" value="OMPdecase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02127">
        <property type="entry name" value="pyrF_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00156">
        <property type="entry name" value="OMPDECASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="6 7" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 7" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMPdecase" evidence="8">
        <location>
            <begin position="16"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01215"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="33078" checksum="8A5D5D53AC527182" modified="2013-07-24" version="1">MSMDKLIEKIAEKQNPTVAGLDPKLSYIPEHIRSASYEKYGKTLDGAADALLQFNKGLIDALCDIVPAVKPQAAYYEMYGWQGVKALTETIAYAKGKGMFVITDGKRNDIGATMTAYAAAHLGSTTVEEETFAPFGADALTVNGYLGTDGIQPLLEVCGQEDKGIFVLVKTSNPSSGELQDKPLADGNTVYRAMGAMCEGWGEKLPGQYGYSGVGAVVGATYPAQLEELRAAMPHTFFLVPGYGAQGGAADDVAPGFDKDGLGAIVNSSRGIMCAWQKEGIDGQDYAAAARREAIRMRDEIVGRIGRIVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNZ4</accession>
    <name>R6YNZ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01570</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30336">
        <property type="protein sequence ID" value="CDD30336"/>
        <property type="gene ID" value="BN815_01570"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="10319" checksum="EE83E81B41681EA8" modified="2013-07-24" version="1">MIPLSFGDIALLNHLLEERGTRYQVRWKDCFTACLEPPGECCFTPELQREALGLVERFYREKGLAVVFSPDKLFFSVKRLEGPGKPGCPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP12</accession>
    <name>R6YP12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AP endonuclease family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30351">
        <property type="protein sequence ID" value="CDD30351"/>
        <property type="gene ID" value="BN815_00126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="24"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="30074" checksum="2244146CF8388119" modified="2013-07-24" version="1">MKLSISNIGWDAEQDEAVYRLMGAYGFSGLEIAPTRIFPEAPYSQREEAKRWSENLKAQYGFGVSSMQSIWYGRQEKLFGNEEERQVLLAYTKEAIDFAAAVGCGNLVFGCPRNRNVPEGIRPEQVEEIACGFFHELGEYAYSKGTALSIEANPPIYHTNYINDTRDALDLVEKVGSRGFLLNLDVGTMVACGETPAVLEGRAHLVRHVHISEPGLSPLQKRPLHRQLLAFLGQQEYSRFVSVEMGKQSQLEKIEDTLHYVWGLLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP83</accession>
    <name>R6YP83_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sugar fermentation stimulation protein homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">sfsA</name>
        <name evidence="4" type="ORF">BN815_01627</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SfsA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30406">
        <property type="protein sequence ID" value="CDD30406"/>
        <property type="gene ID" value="BN815_01627"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00095">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005224">
        <property type="entry name" value="SfsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040452">
        <property type="entry name" value="SfsA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041465">
        <property type="entry name" value="SfsA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30545">
        <property type="entry name" value="PTHR30545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03749">
        <property type="entry name" value="SfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17746">
        <property type="entry name" value="SfsA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00230">
        <property type="entry name" value="sfsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SfsA_N" evidence="3">
        <location>
            <begin position="14"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="SfsA" evidence="2">
        <location>
            <begin position="80"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="226" mass="25133" checksum="0B295DE8087FDECD" modified="2013-07-24" version="1">MTYGAVVKGTFRARPNRFIAQVDTEEGTQICHVKNTGRCKELLVPGATVYLTEGKNPARKTKYDLVAVEKGSLLINMDSQAPNQVAQEYLPRLLPGLTAWRREQVWGDSRFDLYAEAAGERWFVEVKGVTLEENGVALFPDAPTQRGVKHLRELIRCQQEGYRACALFVVQMQGISYFTPNRRTHPEFAQALEEAAAQGVRLEAVDCLVTPATLTPGAPVEIRLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPL2</accession>
    <name>R6YPL2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01712</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000265">
        <property type="protein sequence ID" value="CDD30496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30496">
        <property type="protein sequence ID" value="CDD30496"/>
        <property type="gene ID" value="BN815_01712"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="596" mass="64022" checksum="62A35215418DD5C4" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ70</accession>
    <name>R6YQ70_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">UvrABC system protein A</fullName>
            <shortName evidence="14">UvrA protein</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Excinuclease ABC subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uvrA</name>
        <name evidence="17" type="ORF">BN815_01945</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Forms a heterotetramer with UvrB during the search for lesions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the ABC transporter superfamily. UvrA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30741">
        <property type="protein sequence ID" value="CDD30741"/>
        <property type="gene ID" value="BN815_01945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00205">
        <property type="entry name" value="UvrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 14 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 14" id="KW-0228">DNA excision</keyword>
    <keyword evidence="12 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="11 14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 14" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 14 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 14" id="KW-0677">Repeat</keyword>
    <keyword evidence="13 14" id="KW-0742">SOS response</keyword>
    <keyword evidence="8 14" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="16">
        <location>
            <begin position="599"/>
            <end position="936"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="14">
        <location>
            <begin position="252"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="14">
        <location>
            <begin position="739"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="33"/>
            <end position="40"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14 15">
        <location>
            <begin position="640"/>
            <end position="647"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="941" mass="103733" checksum="2CE455558CDE9299" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQE1</accession>
    <name>R6YQE1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PF04296 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30806">
        <property type="protein sequence ID" value="CDD30806"/>
        <property type="gene ID" value="BN815_00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00279">
        <property type="entry name" value="YlxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007393">
        <property type="entry name" value="DUF448"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037465">
        <property type="entry name" value="YlxR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035931">
        <property type="entry name" value="YlxR-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34215">
        <property type="entry name" value="PTHR34215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04296">
        <property type="entry name" value="YlxR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64376">
        <property type="entry name" value="SSF64376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YlxR" evidence="2">
        <location>
            <begin position="9"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="98"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="15309" checksum="4337DB110793828C" modified="2013-07-24" version="1">MRPKKTPLRMCAGCGEMKPKKELARVVRAPQKEDESGSPLPPEISLDLTGKKPGRGAYLCLDAQCLKQARKSRRLERAFSCKIPEEVYQRLEEEIAQAERAAQEAQQPAGPLDEKGQPIIVIEEPEEPLPRRKGGGHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR88</accession>
    <name>R6YR88_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thioredoxin domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02210</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31056">
        <property type="protein sequence ID" value="CDD31056"/>
        <property type="gene ID" value="BN815_02210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437971" description="Thioredoxin domain-containing protein" evidence="1">
        <location>
            <begin position="25"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="44"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="20498" checksum="BE85DD44099C9A72" modified="2013-07-24" version="1">MNAKKKNLALAGIAVLLVAVLAVAAVLYQKFSGEYAGENLGSTEEAQLAAPDFTVLDSEGNEVQLSDYVGKPIVLNFWATWCYYCKEEMPDFDKAYEAYPEVQFLMVNATDGVQETMESAQEYIQQEGFQFDVFYDTQLEAVNAYYVTGFPATYFIDAQGNLVTRSRGMLDYDTLVKGIGMITE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9H2</accession>
    <name>R6Z9H2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phage integrase SAM-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00512</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27137">
        <property type="protein sequence ID" value="CDD27137"/>
        <property type="gene ID" value="BN815_00512"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="102"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="32080" checksum="666019A524FCDAD3" modified="2013-07-24" version="1">MEQHTISNHQIASFAGKLQEDERSPATIENYLRHIRAFAAWAGEQAVTKELVASWKEHLTGKDYRPGTVNTMLVSLNRFLGFLGWHDCVVKTLRIQRRLFREDSKELTREEYERLVSTAQASGRERLVLLLETICSTGIRVSEVKYITVEALHLGKAEISLKGKIRTILLPNKLCRKLLKYAKKQKTVSGEVFLTRNGTGLSRKQIWAEMKSLCEKAKVAASKVFPHNLRHLFARTFYKVCRDVARLADVLGHSSVETTRIYLISTGAEHAHTLERLRLIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9K6</accession>
    <name>R6Z9K6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transporter major facilitator family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00527</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27172">
        <property type="protein sequence ID" value="CDD27172"/>
        <property type="gene ID" value="BN815_00527"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024671">
        <property type="entry name" value="Atg22-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11700">
        <property type="entry name" value="ATG22"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="146"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="333"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="374"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="8">
        <location>
            <begin position="1"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="435" mass="47445" checksum="F7ED352016B8D10E" modified="2013-07-24" version="1">MSSGEKASSQKFTKAEKSWILYDWANSVYATNIMAVLFPIYFGSVCAAAGADNLVLWSYGTSAATFITAVLAPILGSLADHKGHKKRLFVACLVLGVAFTLFSALTDDYRGLLVGYVISHIGFSGSCLFYDAFLTDVTTRERMDRVSAWGYAMGYIGGSTIPFVLAIIILFVMGMENPVAFKLVILLTSVWWLVFSIPFLKNVHQVHYVEAKKGLLRSTFRNLWATAKDIFTHKRVFLFIIAYFFYIDGVNTIISVSTSYGTTLGLDTVGMILALLVTQVVAMPFSILFGKLAGKVGSINLLCGAVGIYFVITVVGFFMGFNIEQNTGSESALALSQGLFWCMAFLVGTVQGGIQALSRSYFGKLVPADRSNEYFGFFDIFGKFAAVIGPLLVGLFTQFTGRDSIGVISLAILFLIGEAILLAGRKRLFGEEKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA47</accession>
    <name>R6ZA47_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00598</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000033">
        <property type="protein sequence ID" value="CDD27347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27347">
        <property type="protein sequence ID" value="CDD27347"/>
        <property type="gene ID" value="BN815_00598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="5"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="135"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="135"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="27762" checksum="03BB82E63698C97D" modified="2013-07-24" version="1">MTKQTILIVEDEAEIREGIRILLSGENYSILEAENGEQALNRMSDQIDLVILDVMMPGISGLRVCEEIRKTSTVPILFLTAKAQESDKLIGLTAGGDDYLVKPFSYAELIARVKALLRRYCVYQGKGQPGATYEDNMLSAQGITIALDHNQVWVRGEERDLTEIEYQILRLLMQRPQWIFSAQAIYESIWNEPYFPVSNGTVMVHIRKLRTKIEDDPQNPVFIKTVWGKGYRFGWEERYVPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCD1</accession>
    <name>R6ZCD1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase III subunit gamma and tau</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28157">
        <property type="protein sequence ID" value="CDD28157"/>
        <property type="gene ID" value="BN815_00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="100"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="15342" checksum="626426C532661E8C" modified="2013-07-24" version="1">MEALSAGAQRFRDWPEILQRVRGDTKSVAMAFAGSAAYVNGDYMLIEAPELAFELLKRPEQRDRMREAIRQVTGRVYKLGPYRLPQEQAETALDPLAELERRAREQGIALQEEGPSPTADSQEDDGPPPLTDAEIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCZ9</accession>
    <name>R6ZCZ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000086">
        <property type="protein sequence ID" value="CDD28382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28382">
        <property type="protein sequence ID" value="CDD28382"/>
        <property type="gene ID" value="BN815_00836"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="22556" checksum="A967E563C1F02CEE" modified="2013-07-24" version="1">MGKEQNQPGEELGQQVWQQVEPHPLPGGDAQLLRHQQVGGAFQLEHLPADDPGQGGPMAEGHPHHHAGEPPAAGDGQEDDQQNVGDSHDQVNPPGDECVHPAAKHGGQDAQSQGHPRADSGGEQPNADAQREACQGAGQHIPAHPVGAKGRGQAGSQVLAGEIRHHGALLQQEARHGDGQQKQGGSPHKPQGGEPSVARLHRFPTPLRMRGSTRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZD79</accession>
    <name>R6ZD79_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CMP/dCMP deaminase zinc-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00067</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000090">
        <property type="protein sequence ID" value="CDD28457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28457">
        <property type="protein sequence ID" value="CDD28457"/>
        <property type="gene ID" value="BN815_00067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004132">
        <property type="term" value="F:dCMP deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016473">
        <property type="entry name" value="dCMP_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015517">
        <property type="entry name" value="dCMP_deaminase-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11086">
        <property type="entry name" value="PTHR11086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006019">
        <property type="entry name" value="dCMP_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="3">
        <location>
            <begin position="5"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="81"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR006019-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006019-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="18190" checksum="0AFE4CF3B9A0706D" modified="2013-07-24" version="1">MERRDKVNYYLDLAEAVSQRGTCLRKLYGAVIVKNDEVISTGYVGAPRGRQNCSDLGYCLRTQLGIPRGERYELCRSVHAEANAIICASRRDMIGATLYLVGKEVPTGEYVKDAMCCSMCKRLVINAGIEKVIVRDDKERYRVIEVAQWIADDESLKGVLGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFK2</accession>
    <name>R6ZFK2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Two component transcriptional regulator winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01106</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000136">
        <property type="protein sequence ID" value="CDD29247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29247">
        <property type="protein sequence ID" value="CDD29247"/>
        <property type="gene ID" value="BN815_01106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="130"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="130"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="227" mass="26212" checksum="FFDD66AD3FCC0FD7" modified="2013-07-24" version="1">MYRILVVDDEEMIRSLIRKYAEFEGNQVTEAENGMEAVELCRRHPGAYDIIIMDVMMPELDGFSAVAEIRKTCNTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMMRVTAIMNRVNPQGEEHRRNVLTFEGLSIDLDARIVTVDGQRVELSPKEYDLLVYMAQNKNIALTREMLITNVWGYDFYGDDRTLDTHIKLLRRSLGPYSKFIVTLRGVGYRFEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI35</accession>
    <name>R6ZI35_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Rubredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01373</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6 7">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
        <text evidence="6 7">Binds 1 Fe(3+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the rubredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000194">
        <property type="protein sequence ID" value="CDD30107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30107">
        <property type="protein sequence ID" value="CDD30107"/>
        <property type="gene ID" value="BN815_01373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00730">
        <property type="entry name" value="rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024922">
        <property type="entry name" value="Rubredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024935">
        <property type="entry name" value="Rubredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018527">
        <property type="entry name" value="Rubredoxin_Fe_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00301">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000071">
        <property type="entry name" value="Rubredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00163">
        <property type="entry name" value="RUBREDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00202">
        <property type="entry name" value="RUBREDOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 6 7" id="KW-0408">Iron</keyword>
    <keyword evidence="3 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="8">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000071-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="52" mass="5787" checksum="5F12B13C91639221" modified="2013-07-24" version="1">MEVYVCDVCGYRYDPEVGDPDNGIAPGTKFEDLPEDWVCPLCGVGKDQFSQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI57</accession>
    <name>R6ZI57_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Aldehyde-alcohol dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01387</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30132">
        <property type="protein sequence ID" value="CDD30132"/>
        <property type="gene ID" value="BN815_01387"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008774">
        <property type="term" value="F:acetaldehyde dehydrogenase (acetylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004022">
        <property type="term" value="F:alcohol dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006066">
        <property type="term" value="P:alcohol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015976">
        <property type="term" value="P:carbon utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08178">
        <property type="entry name" value="AAD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034789">
        <property type="entry name" value="AAD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012079">
        <property type="entry name" value="Bifunc_Ald-ADH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000111">
        <property type="entry name" value="ALDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="12"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="Fe-ADH" evidence="4">
        <location>
            <begin position="461"/>
            <end position="853"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="868" mass="95211" checksum="BD6687BB9611DEFF" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIG0</accession>
    <name>R6ZIG0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phage integrase/recombinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01485</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000210">
        <property type="protein sequence ID" value="CDD30242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30242">
        <property type="protein sequence ID" value="CDD30242"/>
        <property type="gene ID" value="BN815_01485"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13495">
        <property type="entry name" value="Phage_int_SAM_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase_SAM-like_N" evidence="2">
        <location>
            <begin position="13"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="100" mass="11372" checksum="3B726331A6373074" modified="2013-07-24" version="1">MEHRIISENQLTLFAQKMREDERSPGTIENYVRHVRAFAAWMGGNPATKETAAAWKEHLLSRKYSPGTINGMLVSLNRCCTNGWRTERSSGRETKTRCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZII0</accession>
    <name>R6ZII0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Response regulatory domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01505</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30262">
        <property type="protein sequence ID" value="CDD30262"/>
        <property type="gene ID" value="BN815_01505"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="29433" checksum="4221B797BD9DEFD3" modified="2013-07-24" version="1">MNFLLTDDEPLQLQELTSILRRIRPEAQVFAYAWPDDALEGAKLNSIDVAFLDIQTGGMSGLELALELKKIQPGVHIIFVTGFSQYAVDAFAMHASGYLLKPATEEAVLRELTFLYQERKTGARVRVKTFGGFDVYVDGEPLRFGRAKSKELFAYLVDRRGSSVTTGEAYAALFEDAEDTLSGKSYFRTILHEMVNTLKKAGVEEILVKGRNSYAVLPEKLDCDYYRFLQGDPAAVNAFQNDYMAAYSWAEIRNAELGFKME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ25</accession>
    <name>R6ZJ25_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase C-terminal subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01674</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30457">
        <property type="protein sequence ID" value="CDD30457"/>
        <property type="gene ID" value="BN815_01674"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transket_pyr" evidence="1">
        <location>
            <begin position="7"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="33343" checksum="948165FC0F271F7A" modified="2013-07-24" version="1">MAEMVKKATRESFGEAITALAETNPDIVVLDADLAEATKTGIFKKKYPERFIDCGIAECNMIGIAAGLATCGKVPFAASFAMFSAGRAFEQVRNSVAYPHLNVKIVGSHAGISVGEDGATHQCCEDIALMRSIPGMVILNPADHYEMLAAVKAAAEHVGPVYIRLGRLAVESFNNNDDYKFEIGKGITLRDGKDITIIATGLMVGEAVKAVKALEAVGIDARLIDMHTIKPLDTELVRKAAQETGRIVTVEEHNVMGGLGEAVASYLSEVCPTPVTKIGVNDVFGHSGPAVDLLKEFGLSAENIEATVKKVLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJF1</accession>
    <name>R6ZJF1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30577">
        <property type="protein sequence ID" value="CDD30577"/>
        <property type="gene ID" value="BN815_01788"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="9549" checksum="765F5674D9C59725" modified="2013-07-24" version="1">MYPRLRDLRQDQDLTQKQLAALLKMSQTGYSKYETGENDVPTWVLIRLAELYRTSVDYLLGLTDQPRPYPRKGRGSRENGES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJP3</accession>
    <name>R6ZJP3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribosyl transferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01879</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000300">
        <property type="protein sequence ID" value="CDD30672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30672">
        <property type="protein sequence ID" value="CDD30672"/>
        <property type="gene ID" value="BN815_01879"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="40"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="19897" checksum="844572FD4E954E31" modified="2013-07-24" version="1">MGEVYKMNIAGCERELPICPLNEHMDIAGFVMFSDVEITERAAQALLEKCPEHDVIVTAESKGIPLAYEMARIGCRNYVVARKGIKAYMEDPIHVEVKSITTDHVQKLYLSKADCENLKDKRILIVDDVISTGESLAAMEELLHTIGGQVVGKACVLAEGDAKDRTDIIYLEPLPLFFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKB2</accession>
    <name>R6ZKB2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02064</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30902">
        <property type="protein sequence ID" value="CDD30902"/>
        <property type="gene ID" value="BN815_02064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="104" mass="12235" checksum="906BBF71372829FA" modified="2013-07-24" version="1">MSDDGLAYVCPQGSALIASYDVPLFYFGEMAHHPIRLCDNREENNRRPVYSWVMNNTWETNFKMDLSGFGEYRYTLWLSGETDPQRAMEELRERCFEPWPLITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKZ6</accession>
    <name>R6ZKZ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ATP-dependent Clp protease ATP-binding subunit ClpC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00206</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31122">
        <property type="protein sequence ID" value="CDD31122"/>
        <property type="gene ID" value="BN815_00206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UVR" evidence="5">
        <location>
            <begin position="162"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="555" mass="61630" checksum="6A66A9075037434C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL27</accession>
    <name>R6ZL27_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Hcy-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02296</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31152">
        <property type="protein sequence ID" value="CDD31152"/>
        <property type="gene ID" value="BN815_02296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003726">
        <property type="entry name" value="HCY_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036589">
        <property type="entry name" value="HCY_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02574">
        <property type="entry name" value="S-methyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82282">
        <property type="entry name" value="SSF82282"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50970">
        <property type="entry name" value="HCY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Hcy-binding" evidence="4">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8858" checksum="1B345CF5D7DE4031" modified="2013-07-24" version="1">MNQVLRQLGGKIRHFDGAMGTMLQERGLLPGESPELWGLAHREEIVQIHRAYLEAGADFLKTNTFGAKXXQHLRRQPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLD5</accession>
    <name>R6ZLD5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02406</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000389">
        <property type="protein sequence ID" value="CDD31262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31262">
        <property type="protein sequence ID" value="CDD31262"/>
        <property type="gene ID" value="BN815_02406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="170"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="21911" checksum="C587F3AEBBBE8BCF" modified="2013-07-24" version="1">MGAADHLVAGFAGGKGVVAPAVQQQNGLPALLEVLLQGPGQGAPKGGLPRRGVLVHVHQLHLGQRRLAKALLQPVETHLLLLGHAGGLHRGRGRGKQTEGPLLPAAVAGHLPGVVAGGGLGLIGVLLLLVYDDKAQVLYRGEHRRAGAHHDGGLPPADPLPLVQALPQGETAVEQGDAVPKPAAELPDGLGGEGNLRHHDDDALPLLPHVLDEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM60</accession>
    <name>R6ZM60_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">30S ribosomal protein S14 type Z</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsZ</name>
        <name evidence="7" type="synonym">rpsN</name>
        <name evidence="8" type="ORF">BN815_00378</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Contacts proteins S3 and S10.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31502">
        <property type="protein sequence ID" value="CDD31502"/>
        <property type="gene ID" value="BN815_00378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01364_B">
        <property type="entry name" value="Ribosomal_S14_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001209">
        <property type="entry name" value="Ribosomal_S14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043140">
        <property type="entry name" value="Ribosomal_S14/S29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018271">
        <property type="entry name" value="Ribosomal_S14_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023053">
        <property type="entry name" value="Ribosomal_S14_Z"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19836">
        <property type="entry name" value="PTHR19836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00253">
        <property type="entry name" value="Ribosomal_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00527">
        <property type="entry name" value="RIBOSOMAL_S14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="7241" checksum="F20360B5D465C8EC" modified="2013-07-24" version="1">MAKTSMKVKQQRPQKYSTREYNRCKICGRPHAYLRKFGICRICFRELAYKGEIPGVKKASW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM70</accession>
    <name>R6ZM70_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Enolase</fullName>
            <ecNumber evidence="9">4.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">2-phospho-D-glycerate hydro-lyase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">2-phosphoglycerate dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">eno</name>
        <name evidence="14" type="ORF">BN815_00398</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(2R)-2-phosphoglycerate = H2O + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10164"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58289"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.2.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="9">The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 9">Cell surface</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Secreted</location>
        </subcellularLocation>
        <text evidence="9">Fractions of enolase are present in both the cytoplasm and on the cell surface. The export of enolase possibly depends on the covalent binding to the substrate; once secreted, it remains attached to the cell surface.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 9">Belongs to the enolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.11" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31527">
        <property type="protein sequence ID" value="CDD31527"/>
        <property type="gene ID" value="BN815_00398"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009986">
        <property type="term" value="C:cell surface"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000015">
        <property type="term" value="C:phosphopyruvate hydratase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004634">
        <property type="term" value="F:phosphopyruvate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03313">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00318">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000941">
        <property type="entry name" value="Enolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020810">
        <property type="entry name" value="Enolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020809">
        <property type="entry name" value="Enolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020811">
        <property type="entry name" value="Enolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11902">
        <property type="entry name" value="PTHR11902"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00113">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03952">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001400">
        <property type="entry name" value="Enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00148">
        <property type="entry name" value="ENOLASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00002">
        <property type="entry name" value="enolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01192">
        <property type="entry name" value="Enolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01193">
        <property type="entry name" value="Enolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01060">
        <property type="entry name" value="eno"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00164">
        <property type="entry name" value="ENOLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 9" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="8 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Enolase_N" evidence="13">
        <location>
            <begin position="4"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Enolase_C" evidence="12">
        <location>
            <begin position="139"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9 11">
        <location>
            <begin position="363"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9 10">
        <location>
            <position position="205"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9 10">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="284"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent; in inhibited form" evidence="9">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 11">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001400-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="410" mass="44399" checksum="2E7D6608AB68A46F" modified="2013-07-24" version="1">MVRIQKVFGCEILDSRGNPTVSATVQLTDGTMGTAAAPSGASTGKFEAIELRDGDQRRYGGKGVLKAVRSVSEIISPALEKVPSLTVREIDHVLCKLDGTPNKAHLGANATLAVSMAAARAIAAHYRMPLYRFLGGAVAYQLPRPMMNILNGGAHAGNNIDIQEFMIVPTGAPNFREGLRWCAEITHTLGQQLKARGLSTGVGDEGGFAPDLESDEAAIEAVLEAVDKAGYGGKVQLALDAAGSEWAQENGRYRLPKRGKELDTEDMIEYWENLVQKYPILSIEDPLGEEDWQGWAEMTRRLGDKVQLVGDDLFVTNSERLRQGMDEGAGNAILIKPNQIGTLTETLDCIELAKRGGYKTIISHRSGETEDTFIADLAVAVNAGQIKTGAPCRTERVAKYNRLLRIEECC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZME0</accession>
    <name>R6ZME0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00425</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000436">
        <property type="protein sequence ID" value="CDD31617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31617">
        <property type="protein sequence ID" value="CDD31617"/>
        <property type="gene ID" value="BN815_00425"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="10121" checksum="CC3D2E78EA50291E" modified="2013-07-24" version="1">MKLYIYPQNLKATANLWLWSLRDFALICVGLLLSLVALTQMGILLPLALTAAFAFLSIRMEDLTVLDYIRFAAKFTISTQQEYHWAEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTL4</accession>
    <name>R6XTL4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavodoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00493</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27038">
        <property type="protein sequence ID" value="CDD27038"/>
        <property type="gene ID" value="BN815_00493"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="10"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18641" checksum="C1508714AC7CA583" modified="2013-07-24" version="1">MKGKETFRVYPGTPFCDIGECPYREAIARCYSRGWFLGMAATRFGPDRPLERAMLAAVLHRVAGCPQPPRRGLFFDVSPRSYCAQAADWCACQGILPGLGQGRFFPGRAVSWEELLLALWRWEGCPGGGEAPGEIWARARGFALPEDLYRPLSRGEAAQAVDIFFPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTX5</accession>
    <name>R6XTX5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AP endonuclease family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27178">
        <property type="protein sequence ID" value="CDD27178"/>
        <property type="gene ID" value="BN815_00530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="20"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="29531" checksum="0E36AD3769D39BBB" modified="2013-07-24" version="1">MKTGVSTACLYPLEPERSLDLLLQLGYRRFEVFPNCMEELSPAYLRDLKGRADAYGAEFVSLHPFTSAMESSLLFGDYPRRTREAFDFYRRYMAAAAYLGAKYVVIHGQPQGHGKLPDEGYWQRFGELYRIGYEEGAFPAQENVRQHRGAAPAFIAGMRQYLGEDCAFVLDVKQCRMAGVEIGDMARAMGPRLLHVHLSDGAPGRPCLLPGAGEMELTPFRRLLEGLGFGGVVVTEVYRDSFSQVKELANSLSYTKKAFETPIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVA9</accession>
    <name>R6XVA9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27678">
        <property type="protein sequence ID" value="CDD27678"/>
        <property type="gene ID" value="BN815_00697"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="16513" checksum="C219BE9E329F1952" modified="2013-07-24" version="1">MNQVMESVLTVCVALVAAELLRRFCPEDQMVRFVSGLVALGLLLSLVGAATGLELDLPLSAAQGQRQQEELSSYLEEQYQQAAQQDGEAYVQSLLAAAGLQAKEIQVSTDRNQDGSIVLTEVAAVFTYPVEGERASALLRNALGEGVRVTVETGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWK4</accession>
    <name>R6XWK4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S7</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsG</name>
        <name evidence="10" type="ORF">BN815_00769</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS7 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000078">
        <property type="protein sequence ID" value="CDD28118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28118">
        <property type="protein sequence ID" value="CDD28118"/>
        <property type="gene ID" value="BN815_00769"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.455.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00480_B">
        <property type="entry name" value="Ribosomal_S7_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000235">
        <property type="entry name" value="Ribosomal_S5/S7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005717">
        <property type="entry name" value="Ribosomal_S7_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020606">
        <property type="entry name" value="Ribosomal_S7_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023798">
        <property type="entry name" value="Ribosomal_S7_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036823">
        <property type="entry name" value="Ribosomal_S7_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11205">
        <property type="entry name" value="PTHR11205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00177">
        <property type="entry name" value="Ribosomal_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002122">
        <property type="entry name" value="RPS7p_RPS7a_RPS5e_RPS7o"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47973">
        <property type="entry name" value="SSF47973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01029">
        <property type="entry name" value="rpsG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00052">
        <property type="entry name" value="RIBOSOMAL_S7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6 8" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S7" evidence="9">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="17753" checksum="B904618192DF90C4" modified="2013-07-24" version="1">MPRRGNVAKRDVLPDPMYNSKLVTRLINSVMLDGKKGVAQKIVYGAFEIVQEKTGKEPLEVFEQAMENVMPSLEVKARRVGGSTYQVPMEVRPERRQTLGLRWLTSYSRNRSERTMKERLAGEILDACNGAGGAAKKREDTHKMAEANRAFAHYRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY64</accession>
    <name>R6XY64_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00924</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28698">
        <property type="protein sequence ID" value="CDD28698"/>
        <property type="gene ID" value="BN815_00924"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="19"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="31665" checksum="D95695D6AAAC73C7" modified="2013-07-24" version="1">MRIGLNFTPPHESPEQWAEILEDCGFRAASFPVDYRAPVGLIDAYTKAAREHDIRIAEVGVWDSPHLSDPQRAREAQTRCLEQFRLAEYIHADCCVNVSGAAGDQWFFCYRENYDEALYAKNVEFLQRLCDTVKPQHTVYALEPMQWMLPWNPRQYLKLLRDVDRKGCGVHMDIFNFVRDPYGYTHQEELMEEAFSLLGGSIASSHLKDILLTTGTTVRIQETPLGTGQGKLGAYLHHLSLLPKDTPVLLEHLDSLDEYRAAMAFLRQDYPQYVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYV3</accession>
    <name>R6XYV3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sigma-70 region 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000110">
        <property type="protein sequence ID" value="CDD28933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28933">
        <property type="protein sequence ID" value="CDD28933"/>
        <property type="gene ID" value="BN815_01007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r4" evidence="1">
        <location>
            <begin position="42"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="98" mass="10775" checksum="09A4F9F497059ADB" modified="2013-07-24" version="1">MPRDVLSLDQLRGVTGTPLGDTAANHKRRQAALHVLRLALQQELTPRQRQCMELCVLQGLSQVEAGRQLGVNKATVCRHLKKAKRALRRAAGYAGLPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZS6</accession>
    <name>R6XZS6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00506</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27115">
        <property type="protein sequence ID" value="CDD27115"/>
        <property type="gene ID" value="BN815_00506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004436904" evidence="3">
        <location>
            <begin position="24"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="209"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="260" mass="26930" checksum="1781EC4DF0F75D6A" modified="2013-07-24" version="1">MKKFAMFLSVLLIAVTLAAPVSAAVNFNPSVEQKPAPTVDTVTDANGNEVSAIIRDQDGNEVHGVASGDITVTPVSALDQAAADISEMLSNAYEQIQQANTIADLVPTIGDFLQTIGSAAQVADLVVRDVFDVSLTGTAAEYLAQEGNNITLRFDVGVAPSATLIVLHNYEGSNWEIIPDDRVVQNADGTVDVTFDSLSPIAFVVDSTETDTSASTDANAPTSPQTGDSSLPPVAGAGLITLGCVALASAAVVWKKRAQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZX7</accession>
    <name>R6XZX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PF08876 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00529</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27175">
        <property type="protein sequence ID" value="CDD27175"/>
        <property type="gene ID" value="BN815_00529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014975">
        <property type="entry name" value="DUF1836"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40056">
        <property type="entry name" value="PTHR40056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08876">
        <property type="entry name" value="DUF1836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="20429" checksum="87771B4D00330787" modified="2013-07-24" version="1">MNTEQARDLLAEWARQGQEAAPPAWEELPGIPLYMDQVILYLGESLELFQREGSSLLTSSMINNYVKTGLIPHPDKKKYTKEHLAGLMAVCMLKQVLPIQDIKALFSGGMDPHTYALFRQAHTEALAETCRSLEETCASGADLKQAALLLAAEANAKRAAAQRILSLLGEDVPKKPKEKGEGKGGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0T9</accession>
    <name>R6Y0T9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sigma70_r4_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00631</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000042">
        <property type="protein sequence ID" value="CDD27455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27455">
        <property type="protein sequence ID" value="CDD27455"/>
        <property type="gene ID" value="BN815_00631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r4_2" evidence="1">
        <location>
            <begin position="96"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16586" checksum="D83AADE08867E8F4" modified="2013-07-24" version="1">MGFNYRQKRKEFEQNWAKALKQYIAAGMTQEQITAMREFDEELFRQERVYENRINVGLPDLNIQRFSVEEDYFQDLSHHLDAAMENLCPGSSQKVTDQDRKVVLLACTGLKQEEIAVILHISQMSVYRHLHKLQKLLKKGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y173</accession>
    <name>R6Y173_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Tyr recombinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01271</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000177">
        <property type="protein sequence ID" value="CDD29813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29813">
        <property type="protein sequence ID" value="CDD29813"/>
        <property type="gene ID" value="BN815_01271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="253"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="481" mass="55315" checksum="127C2148F53601DC" modified="2013-07-24" version="1">MAYLQSRRNKEGQVVSYSIRVYKGRDPRTGKQLTPYTMTWRVPEGWSEKRARKEAEKQAAVFEKQCREGYLADGRQTFAQYAAYVLELKERTGLKHLTLIHYRQSLKRVLPFLGHLKLGEIRPQHLNYVYQQLSLPEAREDNEMAEARQALWQVAEARGIKNYVNAKEGGRVSLERLRKGELVKPATARRIAQALELPYSLLFATHRKERCLSSRTIMNCHLVISIVLGQAEKEMRIPLNPAHRASPPKREASDPNYFQMEEVAKILKALEAEPIKWRTAVHLLLVSGCRRGELLGLKWDHVNWESGQIHIDCTLLYAGDRGVYEGTPKTRDSVRTIKLPEETMALLEEYRQWQEAQRQELGEKWEESPYVFPGERGGRMNPSQLGNWLVRFQKRHGLPHLNPHAFRHTMTSMLFFHGVDSVSISHRLGHSSVSTTTSIYSHVMQQAESRISDCMADVLLTTRESAQEDAGEAPKEPEEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Z8</accession>
    <name>R6Y2Z8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01619</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30398">
        <property type="protein sequence ID" value="CDD30398"/>
        <property type="gene ID" value="BN815_01619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="133"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="37196" checksum="9BAF2836434D35F2" modified="2013-07-24" version="1">MENFRVGVVGCGGIAQVHGTVLQHLEGVELVGCADIKPERAQAFAETYGGRAYSSMEELLEGEQLDAVHLCTPHYLHTPMAKLAASRGLHVFTEKPPVMTWEQWAEFRQLEQAPTRVGVCFQNRYNPSVQLLREVLASGKAGKVLGARAFVTWHREAPYYTESGWRGSLQTEGGGVLINQSIHTLDLLGQFLGRATQVEASMMNHHLKGVIEVEDMMEAYLTFGEAHAIFYATTAYCADSPVLVELACENATIRMEEQEVSITWADGSKERHSLTSKPVAGGKAYWGNSHGLCIQDFYRCVREGKPFRNDIAGIADTAELMLSMYQSAREHTVVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y385</accession>
    <name>R6Y385_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00814</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28315">
        <property type="protein sequence ID" value="CDD28315"/>
        <property type="gene ID" value="BN815_00814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013495">
        <property type="entry name" value="CHP02679"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024466">
        <property type="entry name" value="CHP02679_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024465">
        <property type="entry name" value="DUF2399"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036078">
        <property type="entry name" value="Spo11/TopoVI_A_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09664">
        <property type="entry name" value="DUF2399"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11796">
        <property type="entry name" value="DUF3323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56726">
        <property type="entry name" value="SSF56726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02679">
        <property type="entry name" value="TIGR02679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3323" evidence="2">
        <location>
            <begin position="36"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2399" evidence="1">
        <location>
            <begin position="268"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="441" mass="48381" checksum="DB7035D8A2E2CBF8" modified="2013-07-24" version="1">MKEIAAACAAYFQEHPAYHRILVLLFQKVKSFGGPAGTVRLDDATPEECDAARALFGRSFSAPLRIKTADFEAALQNTPYRGVTLKEVLECYFHTAIQTKREIRSQEDARILRITKGAAASVESPLCLRWLEELSTHRGEGWQLIQKSLAKGEEAVGQALLQACKSMAWLEGHPGRRIRLAVLSAYATSDPHALDVNTLGGKLFLHLLSMGAGVRLPTEAEARAALYYNWGILCDSISSLVTQVGLRLYVGKEEHPAFYAFRLRNEACTLTLTNLAGLTGADSPSGRAYLVENQMVFSQLCDAAAGFHSPLLCTSGQPAIAVIRLLDLLVSAGTDLFYAGDFDGKGLSIALQLLERYPDRLRLWRMTGEDYAQCRSEVRASDKSRALLRSCENTVLAPVAQAIERSGFVGYQELLLPQLQRDLLQNGSGPRRVETGPKTCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3J5</accession>
    <name>R6Y3J5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cytidine/deoxycytidylate deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01751</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30538">
        <property type="protein sequence ID" value="CDD30538"/>
        <property type="gene ID" value="BN815_01751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="13817" checksum="6F41A415EEA2EBDB" modified="2013-07-24" version="1">MEFAELYQKAVEVLDPRQVSENVETGGVAAALVTDKGNVYRGVCIDTACSLGFCAEHAAIAAMFTAGENRVEKIVAVGWDKRVMAPCGRCREFLMQLGNPDALVLVAEDTVVKVKDLLPYYWTGDSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3M3</accession>
    <name>R6Y3M3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30573">
        <property type="protein sequence ID" value="CDD30573"/>
        <property type="gene ID" value="BN815_01784"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="7738" checksum="6E463C3696FF0038" modified="2013-07-24" version="1">MSKKALTIALKILFAVVYFLVFLFLIDWIFRNTLSALASIAAVACWVIALIASVGLAHYTVEKMKDIFGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4A3</accession>
    <name>R6Y4A3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ORF">BN815_02002</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30798">
        <property type="protein sequence ID" value="CDD30798"/>
        <property type="gene ID" value="BN815_02002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="27"/>
            <end position="29"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="171"/>
            <end position="173"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="219"/>
            <end position="222"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="301"/>
            <end position="304"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="352" mass="37589" checksum="25A929B609D90342" modified="2013-07-24" version="1">MAATGFLSGLFSMFTMFSKDIGIDLGTANTLVFMRGKGIVMREPSVVAVDVRTDEVLAVGKQAKEMLGRTPGSIVAVRPLKDGVIADFDVTAAMLKYFIKKALKSNTLNRPRIVVCIPSGVTEVERRAVEDAARQAGSNNVDLIEEPMAAAIGAGLPVGEPTGCMVVDIGGGTSEVAVISLGDIVTSVSVRMAGDKFDEAIVSYVKKKYNLLIGERTAEEIKIRIGSAFPTEETINAFVEIKGRNLVDGLPKNVTIHADEVREALADSVMIVVDAIKDTLEKTPPELAADIIDRGIMLTGGGALLRGLDKLVAQETGIPVHVAERPLDCVVEGTGKSLEVELPKNRYRGRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4N9</accession>
    <name>R6Y4N9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M23 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00977</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28835">
        <property type="protein sequence ID" value="CDD28835"/>
        <property type="gene ID" value="BN815_00977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437055" evidence="3">
        <location>
            <begin position="29"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="4">
        <location>
            <begin position="310"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="236"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="255"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="412" mass="44841" checksum="B29052374DB8F7F9" modified="2013-07-24" version="1">MNRKFGKRLFSGLLALCVAAMIPLSVSAQTVAEIQAEQDRLQAEKDQLEAQLEQLRNDEAEKQAEQENLQEQIDVVQQQIDTTRQNINDLNASINELTMKLDASQAEIQDTIDEFKERLVALYTAGNVSTLEILLDSESLSDFTTRMQLVDSMTAHDQELVDKLEAYVDSTSAEREQVEAQKREVAELQKTLESKQDELDQLYEQTTADLVEIQGAEGATENQLAANEEELAANEQEMQEAIAAQKAAEEAAKQEAANNSGSSNSSSGGTVSDGGNVSYPTTGGGVEGFDPIWPLPGVTYISAGYNGYPGHKGLDIAGPYGTPVVAAEDGQVIVANNYDSWGDSWGYYVLIYHNGTYTTRYAHLSSVAVSQGQYVTAGTVVGYEGATGNVTGPHLHFEVYQNGTRVDPMQFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4V2</accession>
    <name>R6Y4V2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FMN_red domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30958">
        <property type="protein sequence ID" value="CDD30958"/>
        <property type="gene ID" value="BN815_02117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="8"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="19294" checksum="2B8588559C2AE121" modified="2013-07-24" version="1">MDLVISDRALDLAGAGATATVIDLSQLKIGPCVGCFGCWVKTPGKCVIRDDACRVYPYLAKSTRLLLVSRVRYGSYDTVMKTMLERAIPIQQAFLRLVQGEIHHKMRDVAPKEATILGYGALSERERQVFSHMAHRNARNLQFSSLRLCFAGEEQVEQAAREEVRRWKSCY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Y7</accession>
    <name>R6Y4Y7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CpXC protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000110">
        <property type="protein sequence ID" value="CDD28940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28940">
        <property type="protein sequence ID" value="CDD28940"/>
        <property type="gene ID" value="BN815_01010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025682">
        <property type="entry name" value="CpXC_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14353">
        <property type="entry name" value="CpXC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CpXC" evidence="1">
        <location>
            <begin position="9"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="209" mass="24187" checksum="4C624B848E3F8CC0" modified="2013-07-24" version="1">MSTEIEKDILCPQCGQSQKYRLYASINAKENPELKRRVLSETLFDWRCKRCNYFAAMAYSFLYTDPEAGYIVCVAPGGEGRTAQPTQEIQSYTKRVVKNLAELKEKILIFDLGYDDVAVELVKNALCTIIARTYQVNRVHAYFSRINEGEMEFAVFLPRKQEPVYHSTKLEVYRQSQEVLRSLDFVDPPGFARVDSKLARKLLQDYQNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5R4</accession>
    <name>R6Y5R4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">BH2734 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31283">
        <property type="protein sequence ID" value="CDD31283"/>
        <property type="gene ID" value="BN815_00221"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="279" mass="31350" checksum="C4C536E74C6C9ED6" modified="2013-07-24" version="1">MAVTLFPDGVPCALQEAFDLSFLRQWGKVFRVFDQQDSGNLCFGLEDGAHRYFVKFAGARPVRYKGEPERAVELLKQSGRVYRDLAHPVLLPLLWEGPVAGGYALLFPWTEAICMGKQYPSRERFLALPLDTKLGIYREVLAFHSHVAKRGYVSGDFYDGCVLFEEATGRTLLCDVDAYHKIPFFNPVGRMWGSTRFMAPEEFEKGAAIDESTMVHTLGAFAFELFAPEGRELAQWPLSPAAWACAKKAASPKREDRFSDVSSYRRAWEDAIGSLPACQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6F9</accession>
    <name>R6Y6F9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsQ</name>
        <name evidence="6" type="ORF">BN815_00374</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31498">
        <property type="protein sequence ID" value="CDD31498"/>
        <property type="gene ID" value="BN815_00374"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_B">
        <property type="entry name" value="Ribosomal_S17_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019984">
        <property type="entry name" value="Ribosomal_S17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_S17/S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019979">
        <property type="entry name" value="Ribosomal_S17_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="PTHR10744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03635">
        <property type="entry name" value="uS17_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00056">
        <property type="entry name" value="RIBOSOMAL_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 3 5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="10186" checksum="E8A3BEFA874A4ADF" modified="2013-07-24" version="1">MSEQRNMRKTVVGRVVSDKMDKTVVVAIQDSVKHPIYNKVIKRTVKRKAHDENNECRVGDRIRIMETRPLSKDKRWRLVEIIEKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7D5</accession>
    <name>R6Y7D5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Alpha-1,4 glucan phosphorylase</fullName>
            <ecNumber evidence="10">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00023</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000024">
        <property type="protein sequence ID" value="CDD27214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27214">
        <property type="protein sequence ID" value="CDD27214"/>
        <property type="gene ID" value="BN815_00023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102250">
        <property type="term" value="F:linear malto-oligosaccharide phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102499">
        <property type="term" value="F:SHG alpha-glucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011833">
        <property type="entry name" value="Glycg_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035090">
        <property type="entry name" value="Pyridoxal_P_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11468">
        <property type="entry name" value="PTHR11468"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000460">
        <property type="entry name" value="Pprylas_GlgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02093">
        <property type="entry name" value="P_ylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00102">
        <property type="entry name" value="PHOSPHORYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 9 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="9">
        <location>
            <position position="605"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000460-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD27214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="755" mass="85366" checksum="2DCF731748A2E4A1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7L0</accession>
    <name>R6Y7L0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00566</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000030">
        <property type="protein sequence ID" value="CDD27284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27284">
        <property type="protein sequence ID" value="CDD27284"/>
        <property type="gene ID" value="BN815_00566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="251"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="1"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="317"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="350"/>
            <end position="357"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="566" mass="62036" checksum="752A2EB8E9011961" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7M8</accession>
    <name>R6Y7M8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Dihydroorotate oxidase B, electron transfer subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">pyrK</name>
        <name evidence="9" type="ORF">BN815_01306</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="5 7">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 6">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="5 6">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (NAD(+) route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterotetramer of 2 PyrK and 2 PyrD type B subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the PyrK family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29920">
        <property type="protein sequence ID" value="CDD29920"/>
        <property type="gene ID" value="BN815_01306"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00945"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.10.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01211">
        <property type="entry name" value="DHODB_Fe_S_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012165">
        <property type="entry name" value="Cyt_c3_hydrogenase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037117">
        <property type="entry name" value="Dihydroorotate_DH_ele_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019480">
        <property type="entry name" value="Dihydroorotate_DH_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023455">
        <property type="entry name" value="Dihydroorotate_DHASE_ETsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10418">
        <property type="entry name" value="DHODB_Fe-S_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006816">
        <property type="entry name" value="Cyc3_hyd_g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 6" id="KW-0274">FAD</keyword>
    <keyword evidence="5 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 5" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="8">
        <location>
            <begin position="3"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="51"/>
            <end position="54"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="68"/>
            <end position="70"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 6">
        <location>
            <begin position="75"/>
            <end position="76"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="214"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 7">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR006816-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR006816-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="26695" checksum="9826A7F796161388" modified="2013-07-24" version="1">MKYDSKPCKLLSARQLTGDVFDFVLEAPALAAMARPGQFAQILVPGHTLRRPISICGIDKTAGTLRFVFQIRGQGTAELAQFQPGSTIEILAPLGNGFPVDKSKRTLLVGGGIGVPPLLGVAAQLGEKAIAVLGFRNKDAVILEEDFQAAGAKTFIATDDGSYGHHGLVTDLCQEQDFDCVMACGPAPMLKAVTALAEQRGVPCYVSLEERMACGIGACLGCAVALNKEDGTQYFGHVCKDGPVFESHRVAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7N8</accession>
    <name>R6Y7N8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00585</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27314">
        <property type="protein sequence ID" value="CDD27314"/>
        <property type="gene ID" value="BN815_00585"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="16474" checksum="CBBBE49781DFD4A9" modified="2013-07-24" version="1">MNEEQLRARQYILSNKELPPEYGAVIINASSETSISLYGHIDTVIVHTREEEAQVQVRGRYRKDLDTLYILDYGAISFPPEFLERKLFEEDKRELSRLLGLRDKNSRLVGWNTVKKKLLEQGFTIKDGREKNRRYSIIQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8C2</accession>
    <name>R6Y8C2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27504">
        <property type="protein sequence ID" value="CDD27504"/>
        <property type="gene ID" value="BN815_00039"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4143" evidence="1">
        <location>
            <begin position="2"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="23565" checksum="DF1765551014CD2C" modified="2013-07-24" version="1">MRDVAEEGGITDVVRFRKFLNACAALTAEQVNYRTLAEAAEISQPTAKEWVRILQGLGILYLLPPFANNELKRLTKTPKLYFCDTGLCAYLSMWLTRDTLMQGAASGHYFENHVVMELLKNFSYSTEKANLTYYRDSNAKEIDVIVEENGMIHPLEIKKSANPDRREVKKYQVLDKTGLDRGSGGIVCMCEEVIPIDEKNCFIPCNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8E8</accession>
    <name>R6Y8E8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">CDP-glycerol:poly(Glycerophosphate)glycerophospho transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01443</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CDP-glycerol glycerophosphotransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30200">
        <property type="protein sequence ID" value="CDD30200"/>
        <property type="gene ID" value="BN815_01443"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047355">
        <property type="term" value="F:CDP-glycerol glycerophosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019350">
        <property type="term" value="P:teichoic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007554">
        <property type="entry name" value="Glycerophosphate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043148">
        <property type="entry name" value="TagF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043149">
        <property type="entry name" value="TagF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04464">
        <property type="entry name" value="Glyphos_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0777">Teichoic acid biosynthesis</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="382" mass="43801" checksum="69FAA06E28AE2A18" modified="2013-07-24" version="1">MGKVKDILRKAARDGLWMALSLLPKDENKAVCQSYYGRGYSDSPKAIADELLSRGWKVYWTVKGEAEAATLPPGVTPIRLDSPRAIYHLCTAGVWVDNSRKWAYTQKRGSTCYVQTWHGFPLKRIEGDAQDALPPDYLRAAKKDSRMADLFLSNSRFLTEIYRRAFWYQGDVLEEGFPRNDILARPHPELEEKVRRTLGLPAEKRLLLYAPTFRKDKGLEAYDMDYARCVKALERRFGGEWLILAKLHPNIAEKASQLDLDPRYIVNASGYPDIQELYLACDGLVTDYSSVMFDYLITGKPCFLYVNDLAAYKADRNFTFDIDKLPFPRAEDNGQLEAILLGYDAQEQARRMEAFNREFGLRETGAAARRTVDYLEERRKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8F3</accession>
    <name>R6Y8F3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">1-deoxy-D-xylulose 5-phosphate reductoisomerase</fullName>
            <shortName evidence="7">DXP reductoisomerase</shortName>
            <ecNumber evidence="7">1.1.1.267</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">1-deoxyxylulose-5-phosphate reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">2-C-methyl-D-erythritol 4-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dxr</name>
        <name evidence="11" type="ORF">BN815_01448</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.267"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the DXR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.267" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000207">
        <property type="protein sequence ID" value="CDD30205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30205">
        <property type="protein sequence ID" value="CDD30205"/>
        <property type="gene ID" value="BN815_01448"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030604">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00183">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003821">
        <property type="entry name" value="DXP_reductoisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013644">
        <property type="entry name" value="DXP_reductoisomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013512">
        <property type="entry name" value="DXP_reductoisomerase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026877">
        <property type="entry name" value="DXPR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036169">
        <property type="entry name" value="DXPR_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30525">
        <property type="entry name" value="PTHR30525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08436">
        <property type="entry name" value="DXP_redisom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02670">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13288">
        <property type="entry name" value="DXPR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69055">
        <property type="entry name" value="SSF69055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00243">
        <property type="entry name" value="Dxr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_redisom_C" evidence="9">
        <location>
            <begin position="65"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="DXPR_C" evidence="10">
        <location>
            <begin position="181"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="32260" checksum="3B7FC424869A7794" modified="2013-07-24" version="1">MEGLCQAAAWETATTTLNAVVGMVGLQPTLAAIRAGKTVALANKETLVAGGAMVMEEARSRGVAMLPVDSEHSAIFQCLQGCPEKGALEKLILTASGGPFFGRKRQELAAVTREQALRHPNWDMGAKITIDSATLMNKGLEVIEASWLFDMPEEKIQVVVHRESIIHSMIQYKDHGVIAQLGLPDMAVPIQYALTYPRRLPSPAGELDLCALGALTFCPPDEEAFPCLALCREALRRGGLVPAAANGANEQAVALFLEGKIGFLDIPRLVEAAMARQAPGVVTLEAVLEADKEARAFVAGAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Q1</accession>
    <name>R6Y8Q1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative stage II sporulation protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01544</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30310">
        <property type="protein sequence ID" value="CDD30310"/>
        <property type="gene ID" value="BN815_01544"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15375" checksum="FDA0946A781E34F3" modified="2013-07-24" version="1">MLQTVNSALIAKSGDESLATLDIACVDLFTGSLELRKAGAACTLLRRGKKVEFIEASSVPVGILPQVEFAAYRRELSPGDVVLLVSDGVTACGQEWLEDLVLHWDEEENPNLLAQRVTDEARKRRSDGHEDDITALALVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8U8</accession>
    <name>R6Y8U8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RmlD_sub_bind domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30350">
        <property type="protein sequence ID" value="CDD30350"/>
        <property type="gene ID" value="BN815_00125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="1">
        <location>
            <begin position="13"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="309" mass="34917" checksum="42B5CCDB38ED284B" modified="2013-07-24" version="1">MIALVGYTGFVGSNIYAAGKDAIDCVYNSKNVQEAYGTAPDLLIYAGMRAEKYLANTAPQADMELVFRAEENIAKIAPKKLVLISTIDVFHNPNGKDEDAPVTTEGLHAYGLNRYRLEQWVRERYPDALIVRLPALYGLHMKKNFIYDFLHVIPSMLKGDTFEELAAQAALLREYYQPQENGFYKCQALAPQEEQLLKETFQGLGFTALNFTDSRNAYQFYPLSRLWEDLQTALEAAIPLWHPATEPVSAGEVYRYLTGEEFVNHIAPQPIYYNYKTKYADVFGGRDGYLMGKDAVLSDIKKFVEGARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9H3</accession>
    <name>R6Y9H3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">S-layer domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01748</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000273">
        <property type="protein sequence ID" value="CDD30535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30535">
        <property type="protein sequence ID" value="CDD30535"/>
        <property type="gene ID" value="BN815_01748"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="47"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="108"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="173"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="234"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="310" mass="34607" checksum="DBE2CF79BD945037" modified="2013-07-24" version="1">MDGVAFNKQPDHVERNIWIEDSQLNSVTFRYPSKNPQAYVYVEGGYDPLRFPDVKRSAWYYSYVESAADMGLFVGDEKGFFNPKADITRAQFVQVLYNAVAPEDYTPAELTFRDVPAGKWYTNAVAWASEMGVVAGYEDGNFRPGANITREEMCVVLENYRRLITDAQPEPVDFTFPDDEEISSWAKEAVYNCYDYSLISGDERSYFNPTDNTIRCEAATVFTKYVLLLEQLPPKEEQPEDPDEESSSSQEESSSSEEPSEDSSSSEGESSSSQDSGSSSDSSQESSSSSEETSLPTTNEDSETHQAPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9I6</accession>
    <name>R6Y9I6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RND family efflux transporter MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01763</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30550">
        <property type="protein sequence ID" value="CDD30550"/>
        <property type="gene ID" value="BN815_01763"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425211" evidence="3">
        <location>
            <begin position="41"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="4">
        <location>
            <begin position="81"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="378"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="111"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="462" mass="50351" checksum="FD9EEF9D6E81408D" modified="2013-07-24" version="1">MKHTSKKPLWIALACVLVVAAAAFCLWFFWLRNLWGAASASPVYVESVADITGINTGDTPRFSGVVEPQATYEIKKDDTKTVAEIYVSEGDQVTPGDALFRYDTEEMQMSLDQAELDLESISNTITTLENQKDDLEKEKKQASKDEQYSYTVQIQAVELQIKTEEYNAETKEQEIDKLEESLQNAEVYSEVEGVVKEVNETPATDANGQPKPFISVLSSGQFRVKGTVSELNIGSLYQGQAVTIHSRVDDTQVWQGVIETIETEPTDDTTNGGVIYYGVDSGQQSSKYNFYVTLSSLDGLILGQHVYIQPDMGLGDLPEGLWLPAFYIAHDDDGSYVWAQNDQGALEKRAVILGEYDSDNDRYQIESGLTEDDYITMPTEGLEEGNPTTSDITQVAPEDPAGDSAVDGGTADGGVMDDGMVDPGMGVTMEESVPEDTGDSTDAAEDAASDSLEGSPMEGLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9N5</accession>
    <name>R6Y9N5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01821</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30610">
        <property type="protein sequence ID" value="CDD30610"/>
        <property type="gene ID" value="BN815_01821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="16617" checksum="439CD96A50ED6B10" modified="2013-07-24" version="1">MPERRMNQPETAHSQMNRLRNRSDFSEGADGSRSLDNFNTPPQPSFDSEEMRGSMQAILAQNIGEYVVIEFLIGTENIVRKQGMLYFVGRSFVTLYDENVNNFIVCDIFSVKFVYFYMPGDRPRYNYNLLPPISGEPGMNARPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA66</accession>
    <name>R6YA66_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Alanine racemase</fullName>
            <ecNumber evidence="3">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00164</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alanine racemase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30815">
        <property type="protein sequence ID" value="CDD30815"/>
        <property type="gene ID" value="BN815_00164"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020622">
        <property type="entry name" value="Ala_racemase_pyridoxalP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00395">
        <property type="entry name" value="ALANINE_RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_C" evidence="6">
        <location>
            <begin position="253"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="3">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="3">
        <location>
            <position position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 5">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3 4">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600821-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="397" mass="43148" checksum="771347D5260BDF45" modified="2013-07-24" version="1">MKEILRRTWAEIDLDALARDFAAVRQAANKNAKVCCVIKADAYGHGAVRMAQEFEALGADWFAVSNLEEALQLRLGGISRPMLVLGYTPPEEAATLAKHRISQCVYSLEYAQELSHYAVEAGATVHIHVKIDTGMSRLGFYFQDISRDEATVQEVKAACTLPGLYPEGIFTHFAVSDEGQAGDAFTMRQFGCFKEMIESLLREGISFAVRHCANSAAVFDYPLSHLDMVRAGIVIYGLYPSAALRNRPQLTPVLALKSVVSHVKEVKPGATISYGRKFTAGQAMKVATIPVGYADGYPRILSAQGAQVLIGGKRCPILGRICMDQLMADVSALPEVKVGDVVTLIGRDGAEEITADELAALEGSINYEVVCGLSKRVPRVYLKNGKVDSIYNALLPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBP6</accession>
    <name>R6YBP6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Transcription elongation factor GreA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Transcript cleavage factor GreA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">greA</name>
        <name evidence="11" type="ORF">BN815_00922</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the GreA/GreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28694">
        <property type="protein sequence ID" value="CDD28694"/>
        <property type="gene ID" value="BN815_00922"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006359">
        <property type="entry name" value="Tscrpt_elong_fac_GreA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01462">
        <property type="entry name" value="greA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00829">
        <property type="entry name" value="GREAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="10">
        <location>
            <begin position="8"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="9">
        <location>
            <begin position="84"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="14"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="17671" checksum="8BBBA24124517B4D" modified="2013-07-24" version="1">MASERQYFVTEEGLAALEKELEELKTVGRREVAEKIKVALSFGDLSENSEYDEAKNDQAMMEARIADLEVMLQGAVVIDESELTNEKVHIGSRIEVDITSSTGAQSRRDFKIVGSNEADPRNGKISDESAVGKALIGAKVGDVIEVETPAGISKYHIVTISR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBY8</accession>
    <name>R6YBY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Stage V sporulation protein AD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000421">
        <property type="protein sequence ID" value="CDD31430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31430">
        <property type="protein sequence ID" value="CDD31430"/>
        <property type="gene ID" value="BN815_00342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010894">
        <property type="entry name" value="SpoVAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038369">
        <property type="entry name" value="SpoVAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07451">
        <property type="entry name" value="SpoVAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="16060" checksum="50D20C2E93F91E86" modified="2013-07-24" version="1">MARGLAGAIQDLGVKDPANMGAAMAPAAAASLYQFLQDTGTSPGDYDGIFTGDLGAVGSQLLYQCLEDNHVDVRSVHQDCGLLLYDRQRQDVHAGGSGCGCSASVLCGHLLRRMERGELRNILFCATGALMSPTSSQQGQAIPGVCHVVQLLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC12</accession>
    <name>R6YC12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31450">
        <property type="protein sequence ID" value="CDD31450"/>
        <property type="gene ID" value="BN815_00350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032564">
        <property type="entry name" value="DUF4928"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16280">
        <property type="entry name" value="DUF4928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="34399" checksum="C08F2B2456ED8006" modified="2013-07-24" version="1">MISPEERLKAFQSENHITTKGPLSLVVQFTRMVRDKAFPLNPDDFQTSSKGQVAGLGGANLKKILKEHGITQQLSSEGGRTSRGSMGLMIKYVDFLNAWNAEEAVDFSVVEDFWAEQVREYFRNQPFVLTADTSKTIGANLDDLFEQAKKRQKQNAGTQYLGTVLQHLVAAKLCLILPEGSFEIHGASVADGPTDRNGDFVIGNTVIHCTTMPGALLIEKCKANLRAGCHPVIITIFERVHTALNLAEDAGLAGGVEVWDIQQFLSANVYEHSLFDEAKRNSTLSSIIDRYNKIVLEAETDPSLRIEFEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC23</accession>
    <name>R6YC23_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00356</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000423">
        <property type="protein sequence ID" value="CDD31460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31460">
        <property type="protein sequence ID" value="CDD31460"/>
        <property type="gene ID" value="BN815_00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28597" checksum="C4FA0E34F4897909" modified="2013-07-24" version="1">MARDALLYMSLFPFSFFSGLVMTEGLFLLATTGACWYAWRGKWLAFGLFGALAALTRMTGLLVIAVGVIRLLEAYRPLEPPVGKSLGRCWKPLLLRLPLTLLPAAGTLLYLLLNSWVDGDPFAFVTHQEHWYQGYLWISQVVEYIGRYLGDNLGSSFGWAVWAPALALFVVGLALLYWAALRKGHPAGLLAYGFCFFVATYSLSWLLSAGRYLSTCFVLFLFLAKLTQRRPALRAALLGGEGVLLGVYLCAFLAGAQVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC46</accession>
    <name>R6YC46_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Deacetylase sirtuin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00993</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28869">
        <property type="protein sequence ID" value="CDD28869"/>
        <property type="gene ID" value="BN815_00993"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="35090" checksum="993E730B5D87360C" modified="2013-07-24" version="1">MCIKTQTSRFTGSSWAQLERLAAALQEADAVLVGAGAGLSTSAGFAYSGERFRRYFGDFEAAYGFHDMYSGGFYPFPTLEEHWAYWSRFIFLNRYCDPPKPVYQNLLELVKEKDTFVLTTNVDHCFQKAGFDKRRLFYTQGDYGLWQCSKPCHDKTYDNQEAVRQMVEAQGFQVTERGLLPPAQPKRAVPTELVPRCPVCGAPMSMNLRADNTFVQDDGWHQAAQRYEWFLRSRKELRVVFLELGVGYNTPGIIKYPFWQMTAANPRATYVCINYQDALCPREIEQQSLCIQRDIHQVLEQLVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCB0</accession>
    <name>R6YCB0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplR</name>
        <name evidence="9" type="ORF">BN815_00381</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31505">
        <property type="protein sequence ID" value="CDD31505"/>
        <property type="gene ID" value="BN815_00381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_B">
        <property type="entry name" value="Ribosomal_L18_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005484">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004389">
        <property type="entry name" value="Ribosomal_L18_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12899">
        <property type="entry name" value="PTHR12899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00861">
        <property type="entry name" value="Ribosomal_L18p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00060">
        <property type="entry name" value="L18_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029548"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="119" mass="12950" checksum="EC2A33909173EDA9" modified="2013-07-24" version="1">MVSKQDSNKARLRRHKRVRGKISGTAERPRLNVFRSNANIYAQVIDDTTGTTLCAASTLDKSFNGNGGNKEAAREVGKLIAQKAAEKGITNVVFDRGGYIFHGRVKELAEGAREGGLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD60</accession>
    <name>R6YD60_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29214">
        <property type="protein sequence ID" value="CDD29214"/>
        <property type="gene ID" value="BN815_01090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="18906" checksum="4C0649632E1A9BF2" modified="2013-07-24" version="1">MPRLLAHGLLEALPLGEDAFLPAGEQLAQLAQQLLHLALGLGGELLPGMAGRAGLGDVLRRPQGAHLGGVEGAAPRPGDAKGPSGLPGHVQTGQGALPVGVHSQAAVVVLGAQRNLQGLLPQVDAVGGVQLDGIGIHVGQPLDGRGLAGPRALQVFPGLVGEGGKALLQPLGILAEIQEHPAAQGGFPVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF70</accession>
    <name>R6YF70_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00554</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27246">
        <property type="protein sequence ID" value="CDD27246"/>
        <property type="gene ID" value="BN815_00554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7699" checksum="A67AA8AE880F195E" modified="2013-07-24" version="1">MSIVASVFLWIIPLLAVAALAAGLVAFFVVRRNERRKREEFQRRQAQAAQRRSQEKELEKMKIDDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFR9</accession>
    <name>R6YFR9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sigma-70 family RNA polymerase sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00624</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000040">
        <property type="protein sequence ID" value="CDD27431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27431">
        <property type="protein sequence ID" value="CDD27431"/>
        <property type="gene ID" value="BN815_00624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="19"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="107"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="20594" checksum="594F7A3558AEC617" modified="2013-07-24" version="1">MERLVRKAQRGDKNAFMALIEKNQLALYRAAKAILHREEDVEDAVQETICKAFYKLSDLRQPKYFKTWLTRILINCCYDLLRQQKGLVPLEILPEEGTSDERETSLDVQRVLAELGENDRLALTLYYLNDLPIKDIAEMLQISEGAVKQRLSHGRKKFKEAYEERETGKVVARHAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG03</accession>
    <name>R6YG03_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01508</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000213">
        <property type="protein sequence ID" value="CDD30274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30274">
        <property type="protein sequence ID" value="CDD30274"/>
        <property type="gene ID" value="BN815_01508"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="264"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="353"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="386"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="410"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="440" mass="46620" checksum="2735A9EC5257E754" modified="2013-07-24" version="1">MSGASPLKDFARYTSLNVLGMIALSCYILADTFFVSLGLGADGLAALNLAIPIYNFIHGSGLMIGMGGGTRYSILQSQGNRREANKVFTHVLYLAAVLAAFFVAVGLLFAGDIVRLFGGTGNVFTMAQTYLRVILLFSPAFLMNNVLLCFVRNDGAPQLSMAAMIGGSLSNVVLDWVFIFPCGMGIFGAVFATGLAPIISMAILSPHFFRRKNNFHPVACRPQGRTLGRILSSGAPSLVTEASSGIVIIAFNALIMGLEGNTGVAAYGVIANLSLVVIAIYTGIAQGIQPILSRSYGAGDRKSLTAILRYAMMTMVCVSVVIYGAVLACAPQIAAVFNSEGNATLQSIAEQGLRLYFIACPFAGCNVVMAMYFTSTERPLPAHAISLLRGFFIILPMAFLLAAVGQMVGIWLAFPVTECLVALLAVGLFLRSQRKAAQVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG30</accession>
    <name>R6YG30_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Holin phage phi LC3 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01543</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30309">
        <property type="protein sequence ID" value="CDD30309"/>
        <property type="gene ID" value="BN815_01543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006485">
        <property type="entry name" value="Phage_holin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04531">
        <property type="entry name" value="Phage_holin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01598">
        <property type="entry name" value="holin_phiLC3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="72"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="72"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="10251" checksum="12C702EC37F411D5" modified="2013-07-24" version="1">MKAINWKVRMKNPVFWAQVAAAVVSPILVGLGLQWEDMTTWPALWEALRQAVLNPVIVVAVACSLWSCVTDPTTAGLGDSQQALGYTQPKKRGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG72</accession>
    <name>R6YG72_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ANTAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01581</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000225">
        <property type="protein sequence ID" value="CDD30354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30354">
        <property type="protein sequence ID" value="CDD30354"/>
        <property type="gene ID" value="BN815_01581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008327">
        <property type="entry name" value="Sig_transdc_resp-reg_antiterm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036382">
        <property type="entry name" value="RR_antiterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ANTAR" evidence="2">
        <location>
            <begin position="133"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="126"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="22029" checksum="4A7E1955A8811247" modified="2013-07-24" version="1">MLTPGAKGAAPDRRVLVALPGEKNRAQWERLLGEEGFREVAFAASGGEARRLLLAGAWDAVVVSAPLPDEFGHQLAMDAAEEGPGVLLAVKSDQWEEVNARVSPYGVLTLGRPFSRGMFSQAVGLLLASQAKAERYRAENEKLRQKLEELRVVSRAKCLLVEYLHLDEESAHKYMERQAMEERKTRRAVAEEILREYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG88</accession>
    <name>R6YG88_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30374">
        <property type="protein sequence ID" value="CDD30374"/>
        <property type="gene ID" value="BN815_00133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="27"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="149" mass="17327" checksum="26458B7A992EBFF3" modified="2013-07-24" version="1">MTLNQDIFAVKLYEMEKQYGRLQSRLRICGRENREKLQAELEHAKEEYEENSLLLKQSIQGSRSPAVAELAQVQWEYMHKVEDLLKEKAEQFFHCEATSKEEDQAEAASLYAEYAMDFATQAMQYALIVALAAMDLQRNAEEKKEEQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG93</accession>
    <name>R6YG93_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27571">
        <property type="protein sequence ID" value="CDD27571"/>
        <property type="gene ID" value="BN815_00659"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="1">
        <location>
            <begin position="53"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="23451" checksum="EFDB7003C4F491A8" modified="2013-07-24" version="1">MKRLGSQQEQPVGPAAKLLETQQGFTVETWMLRQQLCLEKTLEGLDPQVFAQAAQALLDCHRVFIHAKSASASLGQLLLFRLRRLGIEAILLPSGGSEVLEGLSQARSDDLVVLFSFSKVSREGRMILEYQKQAGYRTLAFTSRSYLPEPERADMNLFVYRGETKEYHSMTAPAALIDALVVAVSEKLGDKAVQRLSNLHRLKKAYDGNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGC8</accession>
    <name>R6YGC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">FucIase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01640</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30419">
        <property type="protein sequence ID" value="CDD30419"/>
        <property type="gene ID" value="BN815_01640"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008736">
        <property type="term" value="F:L-fucose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.14.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004216">
        <property type="entry name" value="Fuc/Ara_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038393">
        <property type="entry name" value="Fuc_iso_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038391">
        <property type="entry name" value="Fucose_iso_dom1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012888">
        <property type="entry name" value="Fucose_iso_N1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038392">
        <property type="entry name" value="Fucose_isomerase_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012889">
        <property type="entry name" value="Fucose_isomerase_N2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07881">
        <property type="entry name" value="Fucose_iso_N1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07882">
        <property type="entry name" value="Fucose_iso_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50443">
        <property type="entry name" value="SSF50443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fucose_iso_N1" evidence="6">
        <location>
            <begin position="3"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="Fucose_iso_N2" evidence="7">
        <location>
            <begin position="172"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00030454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="43993" checksum="D89CD9A384DAD647" modified="2013-07-24" version="1">MLYPKIGIRPTIDGRWGGVRESLEEQTMAMARNAKALIEENLRYPDGTPVQCVIADSTSGGGAEAAACADKFSTQNVVATLTVTRCWCYGSETFDMDPLTIKAVWGFNGTERPGAVYLAAVMAAHAQKGLPAFSIYGHDVQEATDTSVPPDAAEKILRFAKCAVAVGWMKNKSYVNVGGVAMGIAGSYCNAGMFQKYLGIRPEWVDMTEVARRITLEIYDHEEYEKAIAWVKANCHEGLDINAGKDLPEIIRKSKVVPPDKDWEFITKMTLVIRDILYGNPKLDEMGWHEEALGKNAVAGGFQGQRNWTDWLPNGDFTEAFMASTFDWNGPKQPTPFATENDTLNGVSMLLGTLVSGTAPCFHDVRTYWSPEACERVTGYKPEGVAXXTSPRAWPPMALST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGE9</accession>
    <name>R6YGE9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0251 protein BN815_01660</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01660</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0251 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000245">
        <property type="protein sequence ID" value="CDD30439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30439">
        <property type="protein sequence ID" value="CDD30439"/>
        <property type="gene ID" value="BN815_01660"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00674">
        <property type="entry name" value="UPF0251"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002852">
        <property type="entry name" value="UPF0251"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37478">
        <property type="entry name" value="PTHR37478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02001">
        <property type="entry name" value="DUF134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="13019" checksum="7FE1AF1E87936CF4" modified="2013-07-24" version="1">MARPSKCRCICSMPQVTEFLPRGAVPEAGDSVVLQVDELEAIRLLDYRGFTQEQCAARMNISRATVARIYEEGRRKVAQALVEGRGLRIEGGDVMICTSPRPECAGEPHCCHRQGKEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGG8</accession>
    <name>R6YGG8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Co-chaperonin GroES</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">10 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Chaperonin-10</fullName>
            <shortName evidence="3">Cpn10</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">groES</name>
        <name evidence="3" type="synonym">groS</name>
        <name evidence="5" type="ORF">BN815_01676</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the GroES chaperonin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30459">
        <property type="protein sequence ID" value="CDD30459"/>
        <property type="gene ID" value="BN815_01676"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00320">
        <property type="entry name" value="cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.33.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00580">
        <property type="entry name" value="CH10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020818">
        <property type="entry name" value="Chaperonin_GroES"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037124">
        <property type="entry name" value="Chaperonin_GroES_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018369">
        <property type="entry name" value="Chaprnonin_Cpn10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10772">
        <property type="entry name" value="PTHR10772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00166">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00297">
        <property type="entry name" value="CHAPERONIN10"/>
    </dbReference>
    <dbReference type="SMART" id="SM00883">
        <property type="entry name" value="Cpn10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00681">
        <property type="entry name" value="CHAPERONINS_CPN10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="10223" checksum="3EE81257DDB75E94" modified="2013-07-24" version="1">MTVKPLFDRVLIKAEEAEETTKSGIVLAAKAQEKPQIARVIAVGPGGEVDGKEVKMYLKEGDRVICAKYSGTEVKVDGEEYTIVRQSDVLAVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGJ7</accession>
    <name>R6YGJ7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SGNH_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000263">
        <property type="protein sequence ID" value="CDD30494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30494">
        <property type="protein sequence ID" value="CDD30494"/>
        <property type="gene ID" value="BN815_01710"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGNH_hydro" evidence="1">
        <location>
            <begin position="6"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="20734" checksum="7589FF2CA020F836" modified="2013-07-24" version="1">MASQLGAQEPGRYEFLNRGISGNRVVDLDARIKRDCINLRPDVISILIGVNDVWHELGEHNGVDAPKFRRVYEGMLQEITHALPGVKLILLEPYVLQGPATLENWDTFRREVDLRREVVRDLAKSYWEKQDLYIPCIDTQKLFDEAAARSCPGVWSADGVHPTPAGHWLLAQEWLRCFKEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGN3</accession>
    <name>R6YGN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01722</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000269">
        <property type="protein sequence ID" value="CDD30509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30509">
        <property type="protein sequence ID" value="CDD30509"/>
        <property type="gene ID" value="BN815_01722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="219"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="320" mass="36645" checksum="C470F419EA351072" modified="2013-07-24" version="1">MSEITEPYYVSMLKGHGFTPDPDDHQYGALGICWKLSPEIGEGSYWTYGQKDLYNIKIHNFSFHKDSLLEFPLPECLSITRYDSISGEELAPYRRLSAGCIKTYIGGYEPYQVLIHKNIPIHSIGIEILPAYYENYLKRQYPEEYRNPVEAFRKIDQTTDFPEMSRLLSELQNYRGDGMAAKLFYESKVAEALSLVVEYQKKGPPVSSKLSAQDLERIQTVAAYLSDHYAAKIPMERLTQIACMGTTKLKSSFKKVYDCTITEYIQQRRMSQAEYLLTSTDLPIGQIAQTVGYSTSSRFAELFRKSTGLLPGEFRKVGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGV7</accession>
    <name>R6YGV7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosome-binding ATPase YchF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ychF</name>
        <name evidence="8" type="ORF">BN815_01795</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30584">
        <property type="protein sequence ID" value="CDD30584"/>
        <property type="gene ID" value="BN815_01795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04867">
        <property type="entry name" value="TGS_YchF_OLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01900">
        <property type="entry name" value="YchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00944">
        <property type="entry name" value="YchF_OLA1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004396">
        <property type="entry name" value="ATPase_YchF/OLA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023192">
        <property type="entry name" value="TGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013029">
        <property type="entry name" value="YchF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041706">
        <property type="entry name" value="YchF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06071">
        <property type="entry name" value="YchF-GTPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006641">
        <property type="entry name" value="CHP00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00092">
        <property type="entry name" value="TIGR00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425435" description="Ribosome-binding ATPase YchF" evidence="5">
        <location>
            <begin position="26"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="domain" description="OBG-type G" evidence="6">
        <location>
            <begin position="1"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="7">
        <location>
            <begin position="279"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="364" mass="40239" checksum="A163735FB2EBB292" modified="2013-07-24" version="1">MKLGIVGLPNVGKSTLFNAITNAGAQSANYPFCTIEPNVGVVAVPDKRLDKLAEMYQPEKFTPATIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFENDDIIHVEGSIDPKRDIETIDVELILSDIEVLDRRIDKTRKMLKADKKYQAELDFLERVHQALEEGKSARSVECTEEEAEILSTVSLLTNKPIIFAANMSEDDFRGGVENNKYFQVVQAFTQAEHAAVLPICAEIEAEISGMEPEEKKLFLADMGLEESGLDRLIQACYSLLGLISYLTAGKPEVRAWTIKRGTKAPQAAGKIHSDFERGFIRAEVIGFDELMECGTMAVAKEKGLVRSEGKDYVMQDGDIVLFRFNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH55</accession>
    <name>R6YH55_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 3">Hypoxanthine phosphoribosyltransferase</fullName>
            <ecNumber evidence="1 3">2.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01909</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>diphosphate + IMP = 5-phospho-alpha-D-ribose 1-diphosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:17973"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="2.4.2.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; IMP biosynthesis via salvage pathway; IMP from hypoxanthine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.8" evidence="1 3"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30704">
        <property type="protein sequence ID" value="CDD30704"/>
        <property type="gene ID" value="BN815_01909"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00591">
        <property type="reaction ID" value="UER00648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052657">
        <property type="term" value="F:guanine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004422">
        <property type="term" value="F:hypoxanthine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032264">
        <property type="term" value="P:IMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005904">
        <property type="entry name" value="Hxn_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01203">
        <property type="entry name" value="HGPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3 5" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="4">
        <location>
            <begin position="19"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU364099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="20625" checksum="BEA0A7BBFEF34BF1" modified="2013-07-24" version="1">MKTECGMRADIESVLFTEEQIQEIVQRVGGEISRDYKDKNLLLVSVLKGSVVFMADLMRAITIPARIDFMATSSYGSGVKTSGVVKIVKDLDLELKGYDILIVEDILDSGKTLSYLMELLQARGPKSIQICTLFDKPDRREVEVRPTYVGAQIPDAFIVGYGLDYDEKYRNLPFVGVLKPSVYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH71</accession>
    <name>R6YH71_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RHH_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30724">
        <property type="protein sequence ID" value="CDD30724"/>
        <property type="gene ID" value="BN815_01929"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038733">
        <property type="entry name" value="Predicted_DNA_bind_prot_RHH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12651">
        <property type="entry name" value="RHH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RHH_3" evidence="1">
        <location>
            <begin position="7"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="59" mass="6939" checksum="159C53B796609F8A" modified="2013-07-24" version="1">MGQVKRNRKQIASTVDPELWEAFRELSEKTRIPASRLLDEAMEDLLLKYKVITHKEKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHC5</accession>
    <name>R6YHC5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01988</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30784">
        <property type="protein sequence ID" value="CDD30784"/>
        <property type="gene ID" value="BN815_01988"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="57" mass="6519" checksum="1D0B8D147532331D" modified="2013-07-24" version="1">MEGKDLLCPITRAGDVQNGYPCQKDRCAWYEPELKKCSVLVIAKELEEHAVEVLREI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHF4</accession>
    <name>R6YHF4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell division protein FtsI/penicillin-binding protein 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02006</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30819">
        <property type="protein sequence ID" value="CDD30819"/>
        <property type="gene ID" value="BN815_02006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transpeptidase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="116"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="119"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="21224" checksum="DC8577AADFA5C5B5" modified="2013-07-24" version="1">MATEGTASNVFANYPVSIAAKTGTAETSNLKTTDPDYTEPNLSFICYAPANDPEIAIAVMMEHGNSGNYAKNVAKDILDQYFGFYTWDEDGNKFDQNGNQVDDSGVIIKTAEEIAEEQAQQEGASQAQQGDSDASSGTEPASTPAPTTDRGSDIPDTPFTGESASPSPSPDSGQESGEGSSSSDGGGDDGDGGSSASAPDGPYYSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHG6</accession>
    <name>R6YHG6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fucose_iso_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02021</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30834">
        <property type="protein sequence ID" value="CDD30834"/>
        <property type="gene ID" value="BN815_02021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008736">
        <property type="term" value="F:L-fucose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015888">
        <property type="entry name" value="Fuc_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02952">
        <property type="entry name" value="Fucose_iso_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fucose_iso_C" evidence="2">
        <location>
            <begin position="212"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="359" mass="39958" checksum="C1C5768B67839572" modified="2013-07-24" version="1">MGTAEELADKMAEFVPIARAIIGIKNLKIITFGPRPQDFFACNAPINGLYQLGVEIEENSELDLLVSYKEHAGDARIPDVCADMAKEMGEGKYYPDMLERMAQFELTLLDWAENHKGSRQYVAFADKCWPAFPSQFGFEPCYVNSRLATRGIPVACEVDIYGALSEYIGMCISGDTVTLLDINNSVPASMYEAQIKGKFDYDYKLNDTFMGFHCGNTPSCKLCADRAVKYQLIQHRLLEPAGSDPDFTRGTLEGDIAPGEITFYRLQSTADGQLRCYVAEGEVLPVPTCSFGGIGVFAIPEMGRFYRHVLVEKRYPHHGAVAFGHHGKALFELFKLLGIQDIGFNQPKGMLYKTENPFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHS7</accession>
    <name>R6YHS7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycoside hydrolase family 2 Gh2F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02113</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30954">
        <property type="protein sequence ID" value="CDD30954"/>
        <property type="gene ID" value="BN815_02113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="34259" checksum="7A12B3B286968B01" modified="2013-07-24" version="1">MMDSHLKPKPFAFARPEAFQAFFRDRLVLASLPRYTYQAGESFTGEFFLANYGKTELSAPLEYTLTGPGVSLAGSLPARPCPAGKRTPLGAVTFQLPVLEQAQRLELRLAVGEVENTYPLWVYPPVEPRCPASVYETRSFDEKARQVLAQGGKVFLAPPADKEHMPQSIGTQFTTDFWSVGTFPAQEGSMGQLIDTQHPIFQSFPTEYHTNWQWWPMASQRAFVLPRTIQAIVTEMDCYAYLRPMAQLFEARCGGGVILASSMGLQDLQQYPEARALLHSLYQYMDSESFAPQQELPPELFASLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIC6</accession>
    <name>R6YIC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02293</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31149">
        <property type="protein sequence ID" value="CDD31149"/>
        <property type="gene ID" value="BN815_02293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="42"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="248" mass="28357" checksum="D1457E7465840F5C" modified="2013-07-24" version="1">MRSYSVFAQYYDELTSNVEYPKRAEYLLELMERLGHAPGLTLDLACGTGSLTLELYKRGVDIYGIDGSVEMLSEARTKCAEAGADILFLCQNMLSIDLYGTVDTALCTLDSLNHLKNGEELQRVFEKVSFFMNPGGYFLFDMNTLYKHQVVLGNETYVYDMDHVYCVWQNRCHAGGKVDIQLDFFEPEGGLYARSTERFSERAYPVEEVLERLSKAGFGEVQVFDELTFNPPREDSQRLVFAAKKRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YII0</accession>
    <name>R6YII0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nodulation efficiency protein NfeD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00834</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28351">
        <property type="protein sequence ID" value="CDD28351"/>
        <property type="gene ID" value="BN815_00834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002810">
        <property type="entry name" value="NfeD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01957">
        <property type="entry name" value="NfeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="9"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="49"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD" evidence="3">
        <location>
            <begin position="55"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="16175" checksum="F9649ED7A09A54F6" modified="2013-07-24" version="1">MPVEVIDFVWLGIAILAAVVEAVVPSLVSVWFVPGSLAGLVVSLCGGPIWLQIFVFLAVSLACLAFTRPLAKKLLVHHKERTNADRVVGATGIVIQDIDNVVSTGRVTVMGNSWSARSTQKDGKIEAGSRVRIERIEGVKLLVTPVEPPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIJ0</accession>
    <name>R6YIJ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02363</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31219">
        <property type="protein sequence ID" value="CDD31219"/>
        <property type="gene ID" value="BN815_02363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="24585" checksum="CD7A0472CD401AAB" modified="2013-07-24" version="1">MLPLLIVGGILLALAALLLAPVRLELSFREAFSAQVRYLFFRIPLAPGKEEEPAPPQEAPPPGDEPPKGPGLGKKLHAMLRREGLRGFLQTLQELAQAVGKASKSLLKKLRLNRFDLYICLGGEEDAAQGAILYGQVCGAAYSACGALFGLLPCRRKAVSVDLDYHSREHRVDFSAAVSIRVLFLLVEGLILLYKALPFFKKLQQSQDHIERISRTRKQGETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIS8</accession>
    <name>R6YIS8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PBECR4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00259</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000401">
        <property type="protein sequence ID" value="CDD31324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31324">
        <property type="protein sequence ID" value="CDD31324"/>
        <property type="gene ID" value="BN815_00259"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041420">
        <property type="entry name" value="PBECR4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18813">
        <property type="entry name" value="PBECR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PBECR4" evidence="1">
        <location>
            <begin position="2"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="112" mass="13135" checksum="D6B8B00096905F6D" modified="2013-07-24" version="1">MEQRLTPLAHLEEFLDSNEIIFRYNEKANRFSAIQADYLLLNDVKEIPVYVFLAQRTGQETYVCRTLFPKTGKDYTVGQPKYTLLQKEKCNLITGETIVQHDRLFMKNQAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIU4</accession>
    <name>R6YIU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Toxin-antitoxin system antitoxin component Xre family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000406">
        <property type="protein sequence ID" value="CDD31344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31344">
        <property type="protein sequence ID" value="CDD31344"/>
        <property type="gene ID" value="BN815_00279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13443">
        <property type="entry name" value="HTH_26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="193" mass="22157" checksum="9F9B95F66FD5F6E3" modified="2013-07-24" version="1">MTLNSLLTQKKMTKYQLSKKSGVPQTTVIDICSGKTRLEKCAAGTVYRIAQALGVSMESLLQDQMEKTIERRSSFEVFKSNVCHLVKDMGDINFLIQTLESDEIRRLYKKRWYPETLYLLAMVDYLSRVNGLPLCEQYSDLRGAKLKQVLYPSSLVLEAKVTKNPALLQQSERESIPEFMSHNIVEREVRDVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJJ9</accession>
    <name>R6YJJ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methylated-DNA/protein-cysteinemethyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00936</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28736">
        <property type="protein sequence ID" value="CDD28736"/>
        <property type="gene ID" value="BN815_00936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="6">
        <location>
            <begin position="5"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="11376" checksum="30F2EC979FC66624" modified="2013-07-24" version="1">MEDTFPKRVYQLVARIPRGKVATYGQLALLAGSPRASRIVGAALAKAPAGLPCHRVLYRDGSLCCQKAFGGPEIQRQLLEAEGVPFLPDGRVDVKVCLWETPEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJR1</accession>
    <name>R6YJR1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">50S ribosomal protein L1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rplA</name>
        <name evidence="10" type="ORF">BN815_00432</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31649">
        <property type="protein sequence ID" value="CDD31649"/>
        <property type="gene ID" value="BN815_00432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_B">
        <property type="entry name" value="Ribosomal_L1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005878">
        <property type="entry name" value="Ribosom_L1_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_L1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_L1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_L1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_L1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023673">
        <property type="entry name" value="Ribosomal_L1_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="SSF56808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01169">
        <property type="entry name" value="rplA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01199">
        <property type="entry name" value="RIBOSOMAL_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0678">Repressor</keyword>
    <keyword evidence="7 8 9" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0810">Translation regulation</keyword>
    <keyword evidence="8" id="KW-0820">tRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="24793" checksum="39517AB21C48057A" modified="2013-07-24" version="1">MKHGKKYVEGAKLIDRSKLYDTAEALDICVKTGTAKFDETVELHVKLGVDGRHADQQVRGAIVLPNGTGKSVRVLAICKPEKEEEAKAAGADFVGGEEMVQKIQSENWMDFDVLITTPDMMGQVGRLGRLLGPRGLMPNPKAGTVTPDIGKAVTDAKAGKIEYRLDKTNIIHCPIGKVSFGVEKLQENFDTLMDAIVKAKPSAAKGQYVRSCVVSATMGPGVKINPAKFI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKF8</accession>
    <name>R6YKF8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01025</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29006">
        <property type="protein sequence ID" value="CDD29006"/>
        <property type="gene ID" value="BN815_01025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="336"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="373" mass="41896" checksum="C4B3CA72B6F3A3AD" modified="2013-07-24" version="1">MAEKYLGESIKNLGFGLMRLPMLGDEIDIEQTKRMVDTFMAKGFTYFDTAYVYIGGKSEVALKEAVVDRYPRDSFQCATKLPFWDMKEPSEMETVFQTSLDRAGLEYYDFYLLHGLNAEVVKKVDAFGGWDFVKGLKEQGRVKHIGFSFHDTAEVLESILQAHPEMEFVQLQINYVDWESEGVQSRKCYEVARKYNKPVIIMEPVRGGSLAIMPPQVQEVFKKAEPEMSVASWAIRYAASLEGVLTVLSGMSTEEQLNDNVSYMEDFKPLDEAERATVQQVVDILNSLPTIPCTACKYCVDGCPQKINIPSIFRTMNDLTLYNNEAGAKRSYANATKEGGKAGDCIQCGNCEAHCPQKIEIIETLKKAAAIFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKM7</accession>
    <name>R6YKM7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00078</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29106">
        <property type="protein sequence ID" value="CDD29106"/>
        <property type="gene ID" value="BN815_00078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="20927" checksum="2AA45F2DA5B8308A" modified="2013-07-24" version="1">MKTLVITGAARKNGHTNQMVKLFLDTLGGEYTIIDAYRAENIAPCKDCRYCWHKKGCSIHDGMDEVYRLLEEADNVVLASPMYFHSITGKMKALIDRFQVYWAGHVRNDMPEKPLRKGAILMVGGAPSFPNQFLGGELVLKNLLNDLSTECLGEVCLPNSDHDSLETRPDIARQVVELAEKMKAAQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKN1</accession>
    <name>R6YKN1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flavodoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00081</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the zinc metallo-hydrolase group 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29111">
        <property type="protein sequence ID" value="CDD29111"/>
        <property type="gene ID" value="BN815_00081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026816">
        <property type="entry name" value="Flavodoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016440">
        <property type="entry name" value="Rubredoxin-O_OxRdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12724">
        <property type="entry name" value="Flavodoxin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005243">
        <property type="entry name" value="ROO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="2">
        <location>
            <begin position="256"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="44784" checksum="BDD17C5BA9D31735" modified="2013-07-24" version="1">MVYTRNISDSIVWVGGSDRRLALFENLFPIPRGVSYNSYVILDEKTALLDTVDSSIALQFIQNVRATLGDKPLDYLIVNHMEPDHCATIEMLLPYYPNLKIVGNAKTFQMIRQFYDFDVDSHALVVKEGDALELGQHTLRFYTAPMVHWPEVMVSYEESEKVLFSADAFGTFGAVDGALFNDEVDFDKDWLEDARRYYSNIVGKYGAQVQAALKKLGGLDIATICPLHGPVWRSDLAYLLNKYDLWSRYEPEDKAVAICYASMYGNTENAANLLANGLAEAGVKNIAVYDVSSTHVSTLISEVFRCSHIVLACPTYNNSIYPAMYNFIHDMEALLVQNRTVGIIQNGTWNPASGKLIQAELESMKNITLLEPVVTVKSSLKEDSKAQLDALKDAIVESLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKP6</accession>
    <name>R6YKP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01068</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29136">
        <property type="protein sequence ID" value="CDD29136"/>
        <property type="gene ID" value="BN815_01068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005235">
        <property type="entry name" value="YmdB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36303">
        <property type="entry name" value="PTHR36303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13277">
        <property type="entry name" value="YmdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004789">
        <property type="entry name" value="DR1281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="68"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="149"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004789-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="27515" checksum="F6E2B08B9BC0C014" modified="2013-07-24" version="1">MNILCIGDVVGSQGCQFLRAHLPALKKTKAIDLVIANGENSADGNGITPDSARYLLDSGVDVITTGNHSFRRRESYDLYDSCEVLLRPANYPAAAPGRGLCVVDMGRVQVGVINLMGTAFMESLRCPFETLDSLLKTPGLPKVVVVDFHAEATGEKRALGFYADGRVTALFGTHTHVPTADGCLLPHHTGYLTDAGMTGPIDSVLGVKPEIIIGKLKTKMPARFEWAKGPCKMDCVLFTAEERTGLCTGVERFSIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM83</accession>
    <name>R6YM83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PF06245 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000172">
        <property type="protein sequence ID" value="CDD29721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29721">
        <property type="protein sequence ID" value="CDD29721"/>
        <property type="gene ID" value="BN815_01249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008323">
        <property type="entry name" value="UCP033563"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36454">
        <property type="entry name" value="PTHR36454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06245">
        <property type="entry name" value="DUF1015"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033563">
        <property type="entry name" value="UCP033563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="429" mass="48672" checksum="790677565A204733" modified="2013-07-24" version="1">MAEIRPFRALRYNLEQAGSIQELTCPPYDIISEEQRREYLSRNGCNIIRLELPKEGENPYEEAARTLRAWREEGILQLDMDPGFYLYEEEFLSQVDHGEPKKVRGLVCLVRLEDFANGVVLPHEETLSKAKEDRFQLLSATRCNFSSIYSLYQDESHTTAQRLENLSRSCPPRYAFSDGLVTHRLWVINDPVAIEALREDFAGRKLYIADGHHRYETGLRYRDTLAQQGAYLPGSQYILMTLTDMADPGLTVFPTHRLVRGLESFDSAALLAACGEDFTLEAKSSREESQAALDSLFQQGRHAFALYDGKSWTVLALKDTAVMEKLLPEKSQAYRTLDVSILHSLVLEKLLGIDKENMANQKNLTYTRSAEEAQAAVDRGESQCCFLLNPTRVEEIGQVAANGEKMPQKSTYFYPKLITGLAMNSLEEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP96</accession>
    <name>R6YP96_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PHP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01637</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30416">
        <property type="protein sequence ID" value="CDD30416"/>
        <property type="gene ID" value="BN815_01637"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="9"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="249" mass="28005" checksum="8765DB072F7D08C4" modified="2013-07-24" version="1">MEQAYTIIADLHTHTLASTHAYSSLTEMVRAASERGLYAIAITDHGKAMPGSPRDWYFGNLREVPLRYRGVLTLAGMEANVLDFEGRLDLEPGDARALDWVVASIHHLPLEGLQNPDVEKCTHLWSQVAKDPRVHVIGHSGDPQFAYDVDKVIPLFGEHHKLVEINNHSFQVRPDNIPNCRKIALACKRYGVPIVVDSDAHFETEVGCFDQALAMLEEIDFPQELILNASEQRLNDYLARYTSTFEARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPC1</accession>
    <name>R6YPC1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative arabinose metabolism transcriptional repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01657</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000243">
        <property type="protein sequence ID" value="CDD30436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30436">
        <property type="protein sequence ID" value="CDD30436"/>
        <property type="gene ID" value="BN815_01657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01541">
        <property type="entry name" value="PBP1_AraR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033532">
        <property type="entry name" value="AraR_ligand_bind_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="356" mass="40257" checksum="338008D0A915F095" modified="2013-07-24" version="1">MKEKAKYIHLFEELKRRILQGEYQNGQRLPGENEMAGEFAMSRQTVRQALSLLEQEGFIQRRQGSGTYVRRVERRRERSWNVGVMATYISEYIFPSILRGIEGELSEEGFFPLLSATKNRVDNERRILEDYMEKRVDGLIVEGTKSALPNPNLHLYEKLKEMGIPVVFFNSYYPALQGCVSVTMDDRQGGIDAVEYLVARGHRRIGGIFKSDDMQGLARYDGYTRGLLRHGITLQDQWVTWFNSESRDNLLTDEYGVSRLLGKIASCTAVVCYNDAVAVKLEKAFAAHGVRVPQDKAIISFDNSQLGELASVGLTSFDHPKESLGACAARKLISMMSGREETSTVMDWGLAERNSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPW8</accession>
    <name>R6YPW8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01832</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000285">
        <property type="protein sequence ID" value="CDD30621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30621">
        <property type="protein sequence ID" value="CDD30621"/>
        <property type="gene ID" value="BN815_01832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_II" evidence="2">
        <location>
            <begin position="55"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="3">
        <location>
            <begin position="153"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="1">
        <location>
            <begin position="314"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="44206" checksum="42C803D56D121099" modified="2013-07-24" version="1">MADGITQEIKSLDIFSGVKRMDFEEGVKQGLIEYIGDETVDAFLDAVYQESLIDDASNLKLVYTPLNGAGKTCVLRILERIGIQDVTVVPEQAEPDGNFPTCPYPNPEFREALQKGLELCEKVQPDLLLATDPDSDRVGIAVKQGGEFKLMTGNEVGILLLDFIARVKQEQGKLPAHPVAVTTIVSTDMVDPIAQHYGVEMRRCLTGFKYIGDIIAELEQKEGNANSYLLGFEESYGYLSGGYVRDKDAVDGSMLICEMASYYKRQGKTLVDVMNELYETYGYYQNATLNFGFEGEDGMKTMQKIMDTLRQEPPTEIAGAKVVGRSDYQLSQSYGDKEGAIDLPKSNVLEYRLENGCKLIVRPSGTEPKIKIYLSGKGATMDESLAEIEKMKAAAPALLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ19</accession>
    <name>R6YQ19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative indolepyruvate ferredoxin oxidoreductase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01896</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30691">
        <property type="protein sequence ID" value="CDD30691"/>
        <property type="gene ID" value="BN815_01896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019752">
        <property type="entry name" value="Pyrv/ketoisovalerate_OxRed_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002869">
        <property type="entry name" value="Pyrv_flavodox_OxRed_cen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01558">
        <property type="entry name" value="POR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53323">
        <property type="entry name" value="SSF53323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POR" evidence="2">
        <location>
            <begin position="11"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="189" mass="20193" checksum="C67C8AB1751B9A55" modified="2013-07-24" version="1">MNKSVMIVGVGGQGTLLASRILGDAMVDQGFDVKVSEVHGMSQRGGSVVTYVRYGDKVYSPVIETGEADVVLAFEQLEAARFLPYLKVGGTVVTSTQKIDPMPVVTGDKAYPQGILEEMEGKGVNVLAVDAMSLAEEAGSQKAVNVVLIGAMARRLGGDKELWLSAVERCVPPKFLEMNKKAFELGWNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR84</accession>
    <name>R6YR84_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02205</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000366">
        <property type="protein sequence ID" value="CDD31051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31051">
        <property type="protein sequence ID" value="CDD31051"/>
        <property type="gene ID" value="BN815_02205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="3"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="7104" checksum="4532D77B199103D2" modified="2013-07-24" version="1">MAPPQVKAVDTTSAGDCFTAAFALRLVEGETSLEAALEFANTAAALTASRPGAQASIPARDEVEALLAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRE0</accession>
    <name>R6YRE0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable GTP-binding protein EngB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">engB</name>
        <name evidence="10" type="ORF">BN815_02290</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Necessary for normal cell division and for the maintenance of normal septation.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31146">
        <property type="protein sequence ID" value="CDD31146"/>
        <property type="gene ID" value="BN815_02290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01876">
        <property type="entry name" value="YihA_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00321">
        <property type="entry name" value="GTPase_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030393">
        <property type="entry name" value="G_ENGB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019987">
        <property type="entry name" value="GTP-bd_ribosome_bio_YsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03598">
        <property type="entry name" value="GTPase_YsxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51706">
        <property type="entry name" value="G_ENGB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0717">Septation</keyword>
    <feature type="domain" description="EngB-type G" evidence="9">
        <location>
            <begin position="22"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="21945" checksum="7B78EE3713A6A567" modified="2013-07-24" version="1">MNFQNVEFELAAGRKDQLPKCTAPEIVFSGKSNVGKSSLINKLVNRKALARVSATPGKTATINFYRLPECRLVDLPGYGYAKVSKGERDRWASLVEGYFAQDRNVALVIQLVDMRHKPTADDLQMVDFLLQTGRPFVVVCTKSDKLNRGETEAQTALFNQLFQEQGIDWLPFSSVKGSGLEALKQVIESAVDQEGMGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRI1</accession>
    <name>R6YRI1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain-containing protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31196">
        <property type="protein sequence ID" value="CDD31196"/>
        <property type="gene ID" value="BN815_02340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="21"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="30486" checksum="4CA0523A71F8919E" modified="2013-07-24" version="1">MYPFSIGVMLDSFRTDVNTALDKAQAMGAQGVQVRATSGETTPAALTPEKRRELLKAIKDRGLTVSALCGDLGQGFVSPEKNPALIEESKRILELAKDLETDVVTTHIGVVPEDKSHPRYAIMQEACGQLAAYADSLQAHFAIETGPEKAATLKEFLDGLHSIGVAVNLDPANFVMVTGDDPVQAVYTLKDYIVHTHAKDGRRLHYVDPEILYGMVESDMLGDSSFIELPLGQGDVDFPNYLKALDDIGFQGFLTIEREVGDDPAADIALAVKFLQEHIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRV7</accession>
    <name>R6YRV7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Mucin-2 (MUC-2) (Intestinal mucin-2)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000397">
        <property type="protein sequence ID" value="CDD31316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31316">
        <property type="protein sequence ID" value="CDD31316"/>
        <property type="gene ID" value="BN815_00251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="158" mass="16425" checksum="6D491855F89A380F" modified="2013-07-24" version="1">MLPIHLILSGPQEAPYPNGGDEAYWMGQVAGALAAHLHAGGLSLAWGLPQGADGFTLALSSQASPPQREGRQKGPALLWRPGDALGRRAAEAIAFQLAQVYPQPELITLEEAPLESLPGPGVAVYLLYRDNPQDEAWLARSAGAAGKALAQGLGSLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS86</accession>
    <name>R6YS86_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multimeric flavodoxin WrbA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00340</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31421">
        <property type="protein sequence ID" value="CDD31421"/>
        <property type="gene ID" value="BN815_00340"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="22450" checksum="5D7F7040826A703D" modified="2013-07-24" version="1">MKVLLINGSPRVGGNTSIALGEMEKIFQQEGIQVETVQVGNKAIRGCVACLSCMEKGKCVFDDLVNETAPKFAEADGLVIASPVYYASANGTLISFIDRLFYSTPFDKTMKVGAAVAVARRGGVSATYDELNKYFAISGMPIATGQYWNAVYGREKGEAAQDEEGMQTMRTLARNMVFLMKSIALGKEQYGVPQREPFQRTNFIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z947</accession>
    <name>R6Z947_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00482</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000004">
        <property type="protein sequence ID" value="CDD26997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26997">
        <property type="protein sequence ID" value="CDD26997"/>
        <property type="gene ID" value="BN815_00482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426438" evidence="2">
        <location>
            <begin position="25"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="111"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD26997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="48006" checksum="ED97350144AB9939" modified="2013-07-24" version="1">MKKVRFLMLIIITFCLVINMTACSKEKTDNYNDANILGRWVETYGDQELIFFEDGTYSEGISGNYQNGTYSISSTVLRLIDSTGITEIYDCVLDGDTLTLTLEDTKKTYLRQRKEDSTTPTSTSSLPSESDLESFAEEPSELSNATAIIAEEQLLGKWISEDNQETWEFTGNGECNYADALATGFEYYTFALEANIITLKPISGNTTTRIICSLEDATLTLTTETGDTSVFYKCEDSPEERIVGTWLADIDGQQLTFFSNEQLEIYSAEMLNIPQYKLTYDIDNTILSIYSPTGITYLAEYTLKADRLTLTTENWGAKTYRKVSEIPEPFISSNYTSQSTTSDKKTILGHWVCIDGTSTHEMFFFEDGTVSSGTNGNLYSFNWSLLDGFLQMSSPTGESQVLQYELTNNSLTLFDNSQTMVFQKQDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAP0</accession>
    <name>R6ZAP0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00038</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27502">
        <property type="protein sequence ID" value="CDD27502"/>
        <property type="gene ID" value="BN815_00038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="320" mass="36894" checksum="6281E64AEE882099" modified="2013-07-24" version="1">MYINEIFELTRAVNGDEFDRLFARVKDNLEEEEGEEYADRSLSHKGLTVVYRKSQYKKKVRLVINTAVMIGERLFDPWDALQKLNRRVRKYFGGQLSLEAFTATGVTMTADLPIGDQARVSAYLRVLRRLGRVKHFSPVSYACFSAHNSFCLEGNSNDTMFMAYDLRSLLEKQLGKDAAPLLDRAKGVLRVEIRLTSARAVRTACGKDEVEEQLLFLYDHSQEVFLGVFQKIVPYGDSYKKGTSVELIRREICDPRLRRRMLRLLDLIPEKKSLLQAQKTMQCRRMDEVMDAFAKIGLSPVTISKRDAVQCNKNLYQYFT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCV5</accession>
    <name>R6ZCV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00823</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28332">
        <property type="protein sequence ID" value="CDD28332"/>
        <property type="gene ID" value="BN815_00823"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="2">
        <location>
            <begin position="21"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="304"/>
            <end position="734"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="743"/>
            <end position="818"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="843" mass="95126" checksum="13A0F9411FA6E61A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCW0</accession>
    <name>R6ZCW0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00826</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28337">
        <property type="protein sequence ID" value="CDD28337"/>
        <property type="gene ID" value="BN815_00826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003937">
        <property type="term" value="F:IMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004643">
        <property type="term" value="F:phosphoribosylaminoimidazolecarboxamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.140.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024051">
        <property type="entry name" value="AICAR_Tfase_dup_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024050">
        <property type="entry name" value="AICAR_Tfase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002695">
        <property type="entry name" value="PurH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11692">
        <property type="entry name" value="PTHR11692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01808">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00798">
        <property type="entry name" value="AICARFT_IMPCHas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="392" mass="43442" checksum="095D1C70F61F4258" modified="2013-07-24" version="1">MANELPLKYGCNPNQKPSRIFMKDGRELPVTVLNGKPGYINFLDALNSWQLVKELKEATGLPAAASFKHVSPAGAAVYVPLSDTLKKIYFVDDLELSPLASAYAAARGADRMSSYGDWAALSDVCDKETALLLKREVSDGVIAPGYTDEALAILKEKRKGGYNVVQIDPQYKPAPVEHKDVFGVTFEQGRNELKIDGSLLENLPTQNKTLTEEAKRDLIVSLITLKYTQSNSVCYVKNGQAIGVGAGQQSRVHCTRLAGNKADNWYLRQCPKVLNLPFKPGIRRADRDNTIDVYIGDECMDVLHDGAWQQFFTEKPEEFTREERRQWLSGMTGVALGSDAFFPFGDNIERAHKSGVEFIAQPGGSIRDDNVIETCDKYGIAMAFTGIRLFHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCW8</accession>
    <name>R6ZCW8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00832</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28347">
        <property type="protein sequence ID" value="CDD28347"/>
        <property type="gene ID" value="BN815_00832"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426508" evidence="2">
        <location>
            <begin position="27"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="48"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="8325" checksum="5676F27BC89F5E63" modified="2013-07-24" version="1">MKKNRLLQKAALLCAAALALPFCLGAAPESAPGGGGDTVLVEPHIMLPGPDAPTPQPLPITPLPDLDGEGLPEGETPLLPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDU5</accession>
    <name>R6ZDU5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">FtsX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00070</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28702">
        <property type="protein sequence ID" value="CDD28702"/>
        <property type="gene ID" value="BN815_00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438434" description="FtsX domain-containing protein" evidence="7">
        <location>
            <begin position="45"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="295"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="340"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="421"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="325"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="454" mass="49549" checksum="BD8C26872B28AF15" modified="2013-07-24" version="1">MNFMNRAWLYIVRKRGKSILLFVILLVMATFVLTALALGNASKAAQQELRQSLGGSFLIGFDYTENNPYLKVESVEGGTLIYSTQQISPELVEQIREIEGIKECSATVESLAAFPSLELFTGNIPIEEEFRASSKILSTWKSEELTRFTSGQLTLTQGRHILPDDKNKGLISKDLAEKNGLKIGDKIQTDKGVEIEIVGLFSPKEIEGINDQVTTYDKIQNLIITDLATLVAYENGPAIQGFNELTVSVDDPQNMEEIISKVKGISGVDWKGFSFLLDNEDYENAASSLEQLSELVATILIVALIVSIAILSLILTMWARTRIHETGVLLSVGISKLSILGQYIAEVLLIAVLAFSLSYFSASAIAGQMGNVLQSGQAVTEVQQENGLSAGSRGEAGTDAEDQKIEPPKLQVRVQFEEMGLLFLLGIGIVTVSAGFSSISVMRLKPREILSKMS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFY0</accession>
    <name>R6ZFY0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome c biogenesis protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01137</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000144">
        <property type="protein sequence ID" value="CDD29372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29372">
        <property type="protein sequence ID" value="CDD29372"/>
        <property type="gene ID" value="BN815_01137"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426653" evidence="1">
        <location>
            <begin position="25"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="272" mass="30635" checksum="FC417CFA6526318F" modified="2013-07-24" version="1">MRKILSLLLAAALLLLALAGCSQAQKEEPLPESIEINFFYNEPCGACHDQINDFYDMFNTQLENVKDKYPYDLQAYNVFQASASDKMYTVLEGLGYPEELISSLTYPILTINGKAYLGTDSIQESLREAFLTAGEDLFENGRGVYDPLEERTVAQQLEDYPLEKGSATVVYFYRLTCEECIQTEEEFMDSLPEQVEADGKSYPLQVVRINTRSGSNNEILQAFFEAYQVPEEDQMVPIVFTSQGYLAGYEDITQNLLPQLEAGAGLNFQYPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHV4</accession>
    <name>R6ZHV4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01348</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30022">
        <property type="protein sequence ID" value="CDD30022"/>
        <property type="gene ID" value="BN815_01348"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427004" evidence="1">
        <location>
            <begin position="28"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="200" mass="21216" checksum="D2402FD9ABDCFACA" modified="2013-07-24" version="1">MKQRKKLLCLVAAAALCLGLAACGARASTEPAVAPYDMTEDQEKLLSLLGLTDKAMVFSFQGPEEATKLTAHTYVLEDGAWVENGGVSMTRDTAEGGPFQGEFALVYRENRSMELYLHHQGGVVSFASEPVAFPGETLASLRGGLQESAPAPLGEEIPVALFVEDGGTALQSLGPEVYFTPGEAAGYDMVQVVTLEFRGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ19</accession>
    <name>R6ZJ19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_01669</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0053 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30452">
        <property type="protein sequence ID" value="CDD30452"/>
        <property type="gene ID" value="BN815_01669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 9 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="62"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="12">
        <location>
            <begin position="7"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="223"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="289"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="448" mass="49230" checksum="3DC1FC085329BC65" modified="2013-07-24" version="1">MDADGLSLLTIVLMALCLALSILYAAGSSAVDFLSQAQVRREAEEGDAKAQKLIKLLNWQKAAVTPLQAGQLLFGALGFAFCLYSFEVPVEGLLSGLENGNLRRLLAILILTAAYLLVFFLLGDLLPKKGARNNALGFATRMAGPLCALHTLAFPFLKLCATIANGILRLCRIDPHILDDLVTEEEILQMVGEGEEKGVIEETERDMITNILDFKDTTAGETMTHRTDIIAVEDTDTIAQVVEASVENGCSRMPVYHEDIDTVVGICYIKDLLPYVGRPVPEFIKITDLMRPAYFVPETKKCSQLFTEMTERKVQIAIVLDEYGGTAGLITLEDLVEDIVGNIQDEYDHEEEEIHRMSETEFTVDGAASIDEVADMAGVDLPEGDYDTIAGLVTERLGRLPKAGEHPQVKEAGLTITVLEVEEQRIARLLLVKDAQEEPTGKEESERK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ33</accession>
    <name>R6ZJ33_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">AAA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01684</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000252">
        <property type="protein sequence ID" value="CDD30467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30467">
        <property type="protein sequence ID" value="CDD30467"/>
        <property type="gene ID" value="BN815_01684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038729">
        <property type="entry name" value="Rad50/SbcC_AAA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13476">
        <property type="entry name" value="AAA_23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27176" checksum="0D531C7E81137257" modified="2013-07-24" version="1">MYLNAIERTGGSFAGKDAYLEGIPAIAGLGLLELRQPVTFLVGENGSGKSTLLEAVALALGFNPEGGSRNFAFSTRDTHSGLHNYLRLHRGPYRPKDGFFLRAESFYNVSSEVDRLANYQPGDGLYQSYGGKSLHHQSHGESFLSLVHNRFWGQGIYLLDEPEAALSPARQLTLLAELHRLVQAGSQLVIATHSPLLMAYPQGEILLLGEGPIRPVEYRETEHYQITKSFLDSPERMLRVLFDET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ91</accession>
    <name>R6ZJ91_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000268">
        <property type="protein sequence ID" value="CDD30507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30507">
        <property type="protein sequence ID" value="CDD30507"/>
        <property type="gene ID" value="BN815_00140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="34227" checksum="0C1BA226809C66B5" modified="2013-07-24" version="1">MGNRTFEDVKSYVEWQSQGKCTVLSAKTEQHFDDLGVDVRVWNVKTDTDGDWWVVEGDGIPMNLYPQSAYYFGADEVYSFHMGLMQRMSASQGEYSPEDFVNGVTLDAEIAPQLFRKLKSVAALIDTAKEIEDFQAIGVQCRETLIELGNHIYDPAMAGDGEQPQASNFKRKCELFIQFYLKGSENADYRSIIKKLTESTWDYANKITHSRSATYYEASTCVTLCISLVGVYENILQKVFDPLSQYHCSVCQSKKLSIDGDDSDEDGMVKKLYLRCEECGATTEVVFEGNDGDNPTYTTGKVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJE1</accession>
    <name>R6ZJE1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01780</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30567">
        <property type="protein sequence ID" value="CDD30567"/>
        <property type="gene ID" value="BN815_01780"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="14039" checksum="FD5ADB2402CB1203" modified="2013-07-24" version="1">MRTTDPNVTTQLVSRLFGIDTASVGILDSRLGEEYQKLAQKEIPRADALVATKGRMESMMNVISACVEERRTVSMVVAIQNAAMVLGFVLVAFLACFGAMGQLTSLVLFLFQLFWVLVTLVLPKLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJM9</accession>
    <name>R6ZJM9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative stage V sporulation protein D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01864</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000295">
        <property type="protein sequence ID" value="CDD30657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30657">
        <property type="protein sequence ID" value="CDD30657"/>
        <property type="gene ID" value="BN815_01864"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005543">
        <property type="entry name" value="PASTA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03793">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00740">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51178">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PASTA" evidence="1">
        <location>
            <begin position="84"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="1">
        <location>
            <begin position="148"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="223" mass="23530" checksum="90AE1BF9E54725CE" modified="2013-07-24" version="1">MDKWNEDRTQDMEYIASYCGFAPAEDPQYALLVFFDEPDDDTNGGYNGGNAVAGPYFAKMMEEILPYLGVEAQYNEEEYANLDTVAPTVTGLTLEEAYAKLEEAGLTYSVIGDESDSSITVTAQVPEAGGAVPKDGQVVLYTNGYDEASTYVTVPSFLGYDVTNASYLASINGLQISVSGSSSSTATVTAQSVAEGEQVQQGTVITLTFVDNANAETGATAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJV9</accession>
    <name>R6ZJV9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Coenzyme PQQ biosynthesis protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01941</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30737">
        <property type="protein sequence ID" value="CDD30737"/>
        <property type="gene ID" value="BN815_01941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="108"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="462" mass="52537" checksum="8973277AE785D66A" modified="2013-07-24" version="1">MSDKTMKENLQSFAAKQILHYLDEDPEKSLPKLLEWADKFDKDNTLPSQRRVFHNILENPDNNWYKLIMSLWSDLDPAVRMTFFENFIVNTSLIGYGRQEKAAAEHNCNIPWAILMDPTSACNLHCTGCWAAEYGNKLNMSFETMDNIIRQGKELGTYMYIFSGGEPMVRKDDIIRLCETHPDCMFLAFTNGTLIDGKFAEEMLRVKNFVPAISVEGFEEATDSRRGAGTYQAVMKAMQVLKEHKLPFGISCCYTSQNLDSISSEAFIDDMVARGAKFAWYFHYMPVGNDAVPELLPTPQQREKMVERIRGFRETKPIFALDFQNDGEFVKGCIAGGRRYLHINANGDMEPCAFIHYSDSSVYDKTLLEALKSPLFMAYHDGQPFNDNMLRPCPMLENPEKLRDMVKKSGAKSTDMQSPEDVDNLYGKCKPYADKWTSTADRLWSCSHSCASCQSCPSAGQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK86</accession>
    <name>R6ZK86_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Fe/B12 periplasmic-binding domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00175</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30872">
        <property type="protein sequence ID" value="CDD30872"/>
        <property type="gene ID" value="BN815_00175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426788" description="Fe/B12 periplasmic-binding domain-containing protein" evidence="2">
        <location>
            <begin position="31"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="3">
        <location>
            <begin position="76"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="340" mass="36810" checksum="7DD1EDBBD59C313D" modified="2013-07-24" version="1">MKRILPLFLALALLLTGCAAVSTTETTSQAVSQVDSPSSALESAPESASSQLESAGEVSITDSNGSQITLDTSAPRVVAAYGSFAEAWLLAGGQLCGVTQDALEQRDLGLPEDIAVVGTVKEPNAEEIIALEPDLVLLASDITTQADIRDVLENAGLACAFFQVDTFADYAFMMEQLCAVTGREDLYEENVTQAGQQIEEAQAKAALSSTRPNVLLIRAFSTGIKAKTDDELAGAILKDLGVHNIADDHPSMLEDLSLEEVIAADPDYIFVTTMGDEQKALDYLNGLIQQNPAWSELSAVKEDRYIVLPKDLFHYKPNNRWGESYQYLGEILYPQLFHEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKJ6</accession>
    <name>R6ZKJ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glyoxylate reductase (NADP(+))</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02141</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000354">
        <property type="protein sequence ID" value="CDD30982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30982">
        <property type="protein sequence ID" value="CDD30982"/>
        <property type="gene ID" value="BN815_02141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="3">
        <location>
            <begin position="118"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="36466" checksum="47086A0730056665" modified="2013-07-24" version="1">MMNEKRALVTIPTGERHRNLLQQAAPGWEFRFRGTDTLVCAPQEALPGQPVTQEDVDWAQVILGNVPAAMLHGSPALEWLQTNSAGVEAYIQPGVLAGDTLLTNATGAYGLAIAEHMLGMLLELFKKLELYRDAQKSGAWQSQGAVKAVYGSTVLVLGMGDIGGEFAGRCKALGAKVIGVRRSPRPCPEYADEVHLLEDLDSLLPQADVVAITLPGTDATRGLMSRERLAKMKEGAVLLNVGRGFIVDTEALCDALERGHLSGAGVDVTDPEPLPPTHRLWNIPTAVVTPHISGFYHLRETHERIVGIFLENLRHFQAGEPLRNLVDFATGYRKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLE0</accession>
    <name>R6ZLE0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TIGR00255 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02410</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31267">
        <property type="protein sequence ID" value="CDD31267"/>
        <property type="gene ID" value="BN815_02410"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005229">
        <property type="entry name" value="CHP00255"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013551">
        <property type="entry name" value="DUF1732"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013527">
        <property type="entry name" value="YicC-like_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30636">
        <property type="entry name" value="PTHR30636"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08340">
        <property type="entry name" value="DUF1732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03755">
        <property type="entry name" value="YicC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00255">
        <property type="entry name" value="TIGR00255"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YicC_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1732" evidence="2">
        <location>
            <begin position="208"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="292" mass="33233" checksum="F757AB88A99B28B2" modified="2013-07-24" version="1">MLRSMTGYGRGEATIGGRRIVFEIKSVNHKFFEFNSRITRGYLFLEDKLKAYVQGKISRGKVDVFLQIETLEETDVQVLVNHSLASAYVKALEELQQRYQLPDGPSLALLSKYSDIFSVHKAPEDEDAVWEAVRQVADMAIASFLKMREAEGARLKADILEKAGEVIALVDQVEQVTPETVEAYRERLRAKIEELLQDNRFDEQRVLTEVAIFADKVAVDEETVRLRSHFQQLQKLVDSDGPVGRKIDFLVQEMNREANTIGSKSVNSKIAYLVVDIKALIEKIREQVQNVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM91</accession>
    <name>R6ZM91_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00403</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31557">
        <property type="protein sequence ID" value="CDD31557"/>
        <property type="gene ID" value="BN815_00403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027024">
        <property type="entry name" value="UCP027386_ABC_sbc_TM0202"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF027386">
        <property type="entry name" value="UCP027386_ABC_sbc_TM0202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427133" evidence="2">
        <location>
            <begin position="25"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="365" mass="38503" checksum="648EAAD085F220D7" modified="2013-07-24" version="1">MKRVLSLTLALALCLSLFGCTAGTSESSSSLASESSASAVESESSASQPESSAVQESQSSAVDTADLGTATVAALKGPTAMGMVKMMSDDAASDSPLYDFTIYASADEITPKLVQGELDIAAVPANLASVLCNNTEGQVQVLAINTLGVLYIVEDGDTVQSVEDLKGKTIFASGKGSTPEYALNYMLTQNGIDPETDVTIEWKSEHSECVASLAATENAIAMLPQPFVTTAQTQNENLRVALDITEEWEKLASANGSDATLITGVVVGRKDFVEQNPQLVQEFLSQYEQSVAYTQEDTAGAAALVGQYDIVPEAVAQKALPECNITFIKGEEMQAKLSAYLQTLLDQNPKSIGGQLPGDDFYYLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM95</accession>
    <name>R6ZM95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PTS system glucose subfamily IIA component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00405</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31562">
        <property type="protein sequence ID" value="CDD31562"/>
        <property type="gene ID" value="BN815_00405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001127">
        <property type="entry name" value="PTS_EIIA_1_perm"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00358">
        <property type="entry name" value="PTS_EIIA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00830">
        <property type="entry name" value="PTBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51093">
        <property type="entry name" value="PTS_EIIA_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PTS EIIA type-1" evidence="3">
        <location>
            <begin position="28"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="161" mass="17244" checksum="CA2A10CA6C15E578" modified="2013-07-24" version="1">MPAAPLGKSTLFGCPISGEVAPVSQCPDPTFAQEILGPGVVIFPEGCELFAPADARVEFALSTKHALGLGTAEGVKFLIHVGMDTNKLEGDGFQSFAKMGDEVKRGDKLLSFDPQVMAENRCSLATPFVFCNSKEGWDLEILRTGRVEAGEDLIRLTPKET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTJ2</accession>
    <name>R6XTJ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00484</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27008">
        <property type="protein sequence ID" value="CDD27008"/>
        <property type="gene ID" value="BN815_00484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027470">
        <property type="entry name" value="Cation_efflux_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16916">
        <property type="entry name" value="ZT_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="SSF160240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="ZT_dimer" evidence="7">
        <location>
            <begin position="224"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="389" mass="41908" checksum="EB4A7EDA6F92339E" modified="2013-07-24" version="1">MKAFVPGYGAQDTPQVREKSGKVAGAVGIATNLLLFAIKLAAGLVSGSVAVMADAVNNLTDSGSSIVMLVGFKLAGKPADEKHPFGHARIEYLSGVIVSFIVLFLGLELGRTSFEKIISPQPADFSALALVILVVSVLLKLWQCFFYRSVGKAIHSDTVFATSSDSRNDAIATTVVLLGALITRFTDVNLDGFLGLAVAVFIVVSGVKLIMETGNPLLGTAPDAALVRTIYEKILSYPGIFGIHDLTVHNYGEGKCFASVHCEVPAEEDILVSHDIIDNIERDFQRDMGIQLVIHLDPVVTGDERTNKLREQVGSLLHVVYPQAAMHDFRVVWGVTHSNVVFDVAVPFSLADSDDQVKERIAQAVSTLDPTYRAVVTVDRESTVNELES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV02</accession>
    <name>R6XV02_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00643</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27523">
        <property type="protein sequence ID" value="CDD27523"/>
        <property type="gene ID" value="BN815_00643"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="57" mass="6555" checksum="436821E7A748B360" modified="2013-07-24" version="1">MESKAQEVMGLISAEDLDLTEYSDALVYRIIERITVLSKEEIRIRFVGGFEITQPLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV54</accession>
    <name>R6XV54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27603">
        <property type="protein sequence ID" value="CDD27603"/>
        <property type="gene ID" value="BN815_00668"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="13295" checksum="0FF3C183C4752A11" modified="2013-07-24" version="1">MKKEIWLNYLESQVERCRQEGEALSQDCREDEARRAKIQGNIFQICATVYQALEAHLPPQELEAAYHRKLEALPENWRAARDMAQAHGDMARAAVEEWKLEAWQQAWDQLGKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWQ2</accession>
    <name>R6XWQ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00772</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000080">
        <property type="protein sequence ID" value="CDD28173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28173">
        <property type="protein sequence ID" value="CDD28173"/>
        <property type="gene ID" value="BN815_00772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="353" mass="40691" checksum="8F8FEABE628D0934" modified="2013-07-24" version="1">MEKGFTDHFSVAVHFGQYDGFYPMMRSTWRASCSRLKEPVYQVDQELHYKNCMKSLTKLTRQYGDAWGLPFSCRLPQLDVSSVSFQFGFVGQQPGIGYQLIRYGDMEKDQEAYEKGNHIIDFWVNTSMTEIGAPNVCYNPALQGFEPMPFWTRMISDGLENILDAYVYMRKKGEERPAWLAFCRKAADWFVRIQNEDGSWYRAYNTEDGSMRMESKANTISAVRFLIQLYLVTGEDSYRETALRAGEWSYQNIYRNMEYRGSTCDNTDITDNESGIYAMFGFLSLYDLTGQQKWLDALIGAADYTETWTYMWSYPMKVLWPNHPFSKNSFSGQSPVTIGGGGGDMYMAACAYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYJ2</accession>
    <name>R6XYJ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00975</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28833">
        <property type="protein sequence ID" value="CDD28833"/>
        <property type="gene ID" value="BN815_00975"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="89" mass="10011" checksum="D67F95706ED9135C" modified="2013-07-24" version="1">MKHTKRRAFFLALGISLFLFITAVGFVVVDYQGRRLSFGESQPPLWLRRLPGGRYTLEVDLLGVEASLDATGLGRARDFLLDFLCLPHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZI4</accession>
    <name>R6XZI4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01077</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000127">
        <property type="protein sequence ID" value="CDD29173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29173">
        <property type="protein sequence ID" value="CDD29173"/>
        <property type="gene ID" value="BN815_01077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="10430" checksum="31A7F52B2866ED30" modified="2013-07-24" version="1">MMYPFLTLDDNTEIVHSEMRPDGTVKVYLERPDAELGFRHATCYLPSYTWEDVEGFTQVEIDRYQEVIESTAHLILQFSQEGGFDHAANL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0J4</accession>
    <name>R6Y0J4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27395">
        <property type="protein sequence ID" value="CDD27395"/>
        <property type="gene ID" value="BN815_00616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="376" mass="42885" checksum="22D983BE30C0D0B8" modified="2013-07-24" version="1">MLTLQPSSYAFRLVQTLAVTGEYPISSLPLLGNERVLKQLIRRLSLPEMICNSHGEMLRTKLFILNGKGREKSLRLYKGALSLLHWLHPGAYEYYMENFWNHHFPGDAAHRDRNHRVAEAVALCANAGVEVLPYDLPRLQQEEIRKVTPDFPSLYLARDVKKAFPGEEKKTLFTRAVGALFYPGGCYAVYNTRDAAMKWKGMGEFKALHSLTEIARLNGGVSHLDGALLFGKSYETAMETLEASEPRHPELRFDSIYPHVHFLALNDFGARLLGILTLPDWKERLLDLLFEPSTRTYGRGTMEYDAQVDGVKILSHLDGDLARLLRFREGLWSHSGKFEVVCFPQQAEFVREFLGDRVGVREIRIETVEETLQESM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Y1</accession>
    <name>R6Y0Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29703">
        <property type="protein sequence ID" value="CDD29703"/>
        <property type="gene ID" value="BN815_01231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="13641" checksum="BDC51DFCBCE0AD0B" modified="2013-07-24" version="1">MKRDGVYRFNLQFPADTQEHIRVGEVLERLGKRKSSLVVAALAEYLDRNPQWETPEVRVKIEQQSAMSREKLEELVRRLVEEKLASLPVSSQEADPAVEEELDSDISQMLENLELFQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1H5</accession>
    <name>R6Y1H5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding domain-containing protein AraC-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00689</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000053">
        <property type="protein sequence ID" value="CDD27665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27665">
        <property type="protein sequence ID" value="CDD27665"/>
        <property type="gene ID" value="BN815_00689"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00165">
        <property type="entry name" value="HTH_AraC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="49" mass="5309" checksum="60E6754AE68D6A79" modified="2013-07-24" version="1">MGLLLRGGEKIGDVAVAVGYENSPHFSRAFKKFYGVSPKQYQSSGQDST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2P9</accession>
    <name>R6Y2P9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28085">
        <property type="protein sequence ID" value="CDD28085"/>
        <property type="gene ID" value="BN815_00756"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="18733" checksum="4F67A519DDBF52B5" modified="2013-07-24" version="1">MKKTRWIFAGSLYVILAVAVAAGCFLWGYHANQVVLPEDVIDGEADERVYNEQFQYRRTEYQDDFERYPWFDTISFIGEIIPYSEDYAGDKIYIRALDASGSSDAFGSNGWLAQQDGLVIEKDGEALQWEDLEMGDILRVVYLTGVMPLPALPTYYPIYIEVLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2S5</accession>
    <name>R6Y2S5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH OST-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01577</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000222">
        <property type="protein sequence ID" value="CDD30343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30343">
        <property type="protein sequence ID" value="CDD30343"/>
        <property type="gene ID" value="BN815_01577"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025605">
        <property type="entry name" value="OST-HTH/LOTUS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12872">
        <property type="entry name" value="OST-HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51644">
        <property type="entry name" value="HTH_OST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH OST-type" evidence="2">
        <location>
            <begin position="209"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="175"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="32127" checksum="D0CD3CAE7B4199C5" modified="2013-07-24" version="1">MASDNRFAVLIDADNVSVKYIKIILDEISKDGIATYKRIYGDWTNPSLISWKSTLLDNSIIPVQQYSYTTGKNSTDSAMIIDAMDILYSGRVEGFCLVSSDSDFTRLAARLRESGMTVIGMGESKTPNSFIAACNKFKYLDILSAADEAEAEEAAPKAEPAKKPAAQPKKTAQKAAAKKPKEEPKAEKEPKPAEPKKQQEKAIEEPRTSLRTIRRALRTIVRENSDEDNWIMVSQVGNLLDKRYTDFDVRNFGFSKLTPFLESLDMFEIKDMKKDSSSPQKYVRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y320</accession>
    <name>R6Y320_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">L-fucose isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01639</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000240">
        <property type="protein sequence ID" value="CDD30418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30418">
        <property type="protein sequence ID" value="CDD30418"/>
        <property type="gene ID" value="BN815_01639"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008736">
        <property type="term" value="F:L-fucose isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006004">
        <property type="term" value="P:fucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.14.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004216">
        <property type="entry name" value="Fuc/Ara_isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038393">
        <property type="entry name" value="Fuc_iso_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015888">
        <property type="entry name" value="Fuc_isomerase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02952">
        <property type="entry name" value="Fucose_iso_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50443">
        <property type="entry name" value="SSF50443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fucose_iso_C" evidence="3">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="132" mass="14669" checksum="2953255CFC9AC8A3" modified="2013-07-24" version="1">MLRVNIVEGVGPVLQIAEGWTANLPDGIHTPIDQRTDPTWPTTWFVPRTTGERAFRDVYSVMANWGANHGVTVYGHVGADLITLASMLRIPVTLHNVPQEKVYRPHAWAAFGTKDTEAADFAACKHYGPLYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3F8</accession>
    <name>R6Y3F8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01714</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000266">
        <property type="protein sequence ID" value="CDD30498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30498">
        <property type="protein sequence ID" value="CDD30498"/>
        <property type="gene ID" value="BN815_01714"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="194"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="293" mass="32785" checksum="C51A71CB1768C3F8" modified="2013-07-24" version="1">MLAEFLADQGDWTSVMPGARACLFSLDERPGPLPLQLEHLHFETLFCLRGSVTLTRQDGSFLKAGAQQVLLLTDLAGFTGANVDAPLEGVLVAVDARGARESLKSICNLLGGLTLDTGRVRRWMASQGGCAVVGPTHWSRAAFADLDSLPKSERARWCVWKSVELLYLLSTQEEQERDVPPSPMPDRNLARQLAETRRYMEEHLDEPLTIPTLSRRACLSATTFKEEFRRMYGLPVHTWLRQRRMERAAELLHTSGLSLEKVAQAVGYSSVSQFAATFRRYYGVTPGKYRKNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3R2</accession>
    <name>R6Y3R2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30618">
        <property type="protein sequence ID" value="CDD30618"/>
        <property type="gene ID" value="BN815_01829"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="3"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="423" mass="45495" checksum="D3C470B06C3D81B5" modified="2013-07-24" version="1">MKHDIVIIGGGPAGLAAAISARESGVEDVLIVEREPELGGILNQCIHNGFGLHTFKEELTGPEYAARFIEKAEQLQIPHWLSTTVVDMQRQGESLLVTCVSRERGLQVLEAGAVILAMGCRERPRGALNIPGTRPAGIFSAGTAQRLVNLEGYLPGREVVILGSGDIGLIMARRMTLEGAKVKCVAELMPYSGGLKRNIVQCLDDYGIPLKLSHTVVDIQGKERVTGVTIAQVDEKSKPIPGTEEHIPCDTLLLSVGLIPENELSKAVGVELSPVTNGPTVNESLETSIPGVFACGNVLHVHDLVDYVSEEAQQAGKHAAAYVQGAAAAQGREIPLKPQGAARYTVPVSLCPQRMGEQLVVRFRVGRNIRGGVVKVFAGDKLLYQRKRPVMAPGEMEQVVFQKAWFTGGEAEIRLVAEEEEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3X4</accession>
    <name>R6Y3X4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal RNA small subunit methyltransferase G</fullName>
            <ecNumber evidence="2">2.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">16S rRNA 7-methylguanosine methyltransferase</fullName>
            <shortName evidence="2">16S rRNA m7G methyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rsmG</name>
        <name evidence="3" type="ORF">BN815_00871</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the N7 position of a guanine in 16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28545">
        <property type="protein sequence ID" value="CDD28545"/>
        <property type="gene ID" value="BN815_00871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070043">
        <property type="term" value="F:rRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00074">
        <property type="entry name" value="16SrRNA_methyltr_G"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003682">
        <property type="entry name" value="rRNA_ssu_MeTfrase_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31760">
        <property type="entry name" value="PTHR31760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02527">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003078">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00138">
        <property type="entry name" value="rsmG_gidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="2">
        <location>
            <begin position="102"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="2">
        <location>
            <begin position="129"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="19459" checksum="321ED4139185EE05" modified="2013-07-24" version="1">MTDIRQELQEKAKAMGIKLTAQQADQFQTYMELLLEWNEKINLTAITQPEEVVEKHFLDSLTLLSWGKLKQGAKVIDVGTGAGFPGIPLKIARPDMDLTLLDGTMKRLNFLGEVCTALKLSARRIHKRAEEAGLDKTMRERYDVATARAVANXXXXPWPPCRCWRSTACPSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y443</accession>
    <name>R6Y443_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">S-layer domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00897</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28625">
        <property type="protein sequence ID" value="CDD28625"/>
        <property type="gene ID" value="BN815_00897"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000272">
        <property type="term" value="P:polysaccharide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025883">
        <property type="entry name" value="Cadherin-like_b_sandwich"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008965">
        <property type="entry name" value="CBM2/CBM3_carb-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002102">
        <property type="entry name" value="Cohesin_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12733">
        <property type="entry name" value="Cadherin-like"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00963">
        <property type="entry name" value="Cohesin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49384">
        <property type="entry name" value="SSF49384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425035" evidence="3">
        <location>
            <begin position="27"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="634"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="domain" description="Cohesin" evidence="4">
        <location>
            <begin position="35"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Cadherin-like" evidence="5">
        <location>
            <begin position="171"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="Cadherin-like" evidence="5">
        <location>
            <begin position="269"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="Cadherin-like" evidence="5">
        <location>
            <begin position="368"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="Cadherin-like" evidence="5">
        <location>
            <begin position="464"/>
            <end position="544"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="547"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="547"/>
            <end position="589"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF12733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="670" mass="70688" checksum="BA209BD05904C8F0" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y467</accession>
    <name>R6Y467_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01957</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30753">
        <property type="protein sequence ID" value="CDD30753"/>
        <property type="gene ID" value="BN815_01957"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="27030" checksum="88E02CA08D818E65" modified="2013-07-24" version="1">MELLRQPVKGIFFDLGWTLVYPPSGDWEFTEPAKKLFRWDVYATLPEERRAQGRKAAYDTFRPRHKMATLEEEYQQNLDYYGEIARLFPELGATPQDVETAALEKVYQARHTYELFEDSIPTLEALRGKYKLGVISDTWPSIVPVLEEFGLPGYFDTLTYSFEVGCFKPDPRMFADALGKMGLPPEQCVFIDDTAQNLVGAQKLGIQPVQIRKKPGADPCPEGMLSIDKISGILELLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4G1</accession>
    <name>R6Y4G1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02035</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30848">
        <property type="protein sequence ID" value="CDD30848"/>
        <property type="gene ID" value="BN815_02035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="14343" checksum="A7B3AA0965F5D6E3" modified="2013-07-24" version="1">MAEKKEPLLLLDNSTMYVIGAGDYHSTNLTFEEAKAIIDMYQTEDILRCFTDRATEQVLHDFVGIEPRDFAYKPIRKMRVGQDAIAVKRYITPSETQPEVEATDGVLAKKIQNVYVYCQYITRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4I5</accession>
    <name>R6Y4I5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000104">
        <property type="protein sequence ID" value="CDD28775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28775">
        <property type="protein sequence ID" value="CDD28775"/>
        <property type="gene ID" value="BN815_00950"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008313">
        <property type="entry name" value="GH125"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31047">
        <property type="entry name" value="PTHR31047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06824">
        <property type="entry name" value="Glyco_hydro_125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028846">
        <property type="entry name" value="UCP028846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01149">
        <property type="entry name" value="DUF1237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="423" mass="48219" checksum="6D86264B6D75146C" modified="2013-07-24" version="1">MIPPILVEKAGELEAAVREKFPALAPLARQCFLNTIETTVTQLEDGSYFVITGDIPAMWLRDSAAQLRPYVKYAKEDSCLRDILRSVLQKYAFYINLDPYANAFNSRPQPGYSEHDYSSFHTPWVWERKYEVDSLCAPLYLAHQYYEATGDTSIFTEEFRLMIHRIADTFSTEQRHERSPYWFVREQCPPSDTLPMAGHGRPVNVTGMTWSGFRPSDDACKFGYLIPSNMMAVVALGYAVELLQAGYEDKVLEERCRGLAADIQDGIETYGVCDHPKYGKIYAYETDGFGNYNLMDDANSPSLLSIPYLGYKPAEDPIYQNTRRFVLSPDNPYYYVGQAAQGIGSPHTPPRYIWHISLVMQILTSTDEAEKQQCLEMLSRTHAGTNFMHEGFDADDPTKFTRPWFAWANTLFAQMLEKEVGLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4J0</accession>
    <name>R6Y4J0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">POLIIIAc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00952</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28780">
        <property type="protein sequence ID" value="CDD28780"/>
        <property type="gene ID" value="BN815_00952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="15"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="318" mass="36229" checksum="6AEAD1CBBECB1B41" modified="2013-07-24" version="1">MKDQILLPEGTYYKANLHCHTTLSDGHLTPQQVKEEYQKQGYSIIAYTDHRKYVHHTELDDENFLSLAALEVDVTEEPTENREWPVLKCYHLNLFDTNPAQEKPADLLPKFQYGDLEGLNRYIQQMRESGFLVCYNHAYWSLQDWRDYSGLKGLFAMEIYNHGCEHDGLYGFNPQVYDEMLRAGQRLYALSTDDNHDTRPIGDPLNDSFGGFVQIAAKELTYPAVMEALQAGRFYWSQGPQILGLSIEGGALKVKTSPVEKIFVTVEGRNSYKAVVAPGESLTEATFPLSGKEGWFRIQVRDSRGLFAGSNAYFIDQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y539</accession>
    <name>R6Y539_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02182</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31028">
        <property type="protein sequence ID" value="CDD31028"/>
        <property type="gene ID" value="BN815_02182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="158"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="242"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="285" mass="32566" checksum="287A3254B8626C76" modified="2013-07-24" version="1">MEKLEYAVAPGWWHGLAPLNFGWEACAPGHQFGPAVRHYHLLHYVLEGEGTFLKGGATYRVDAGDLFVIRPEEVTTYRASAARPWQYVWLGFQAGETPPFLQAPVIRQPPVRKLFESLREQCRYEHQDGRVFALLYDVLWRLSQDAPPPASRQEPYAAYAKAYLETSYMQPVSIQKLADTLHIDRRYLTVLFREAYGEPPQAYLMRLRLEQAREFLGQGYGVTEAATLAGFSDLSNFSRQYKRQFGASPSRQKRRXXXPQPPEAAVKTGKPPQRPPGRLPFYTLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y595</accession>
    <name>R6Y595_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29020">
        <property type="protein sequence ID" value="CDD29020"/>
        <property type="gene ID" value="BN815_01029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="8502" checksum="D993C082E67637CF" modified="2013-07-24" version="1">MKTRIPELRRERKLSQEELARAVGTTRQTITSIEVGRYTASLPLAYKIAHYFGLTIEEVFDFSELEGEVRSGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5J9</accession>
    <name>R6Y5J9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Probable endonuclease 4</fullName>
            <ecNumber evidence="7">3.1.21.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Endodeoxyribonuclease IV</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Endonuclease IV</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nfo</name>
        <name evidence="9" type="ORF">BN815_01072</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Endonucleolytic cleavage to 5'-phosphooligonucleotide end-products.</text>
            <dbReference type="EC" id="3.1.21.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 3 Zn(2+) ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the AP endonuclease 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.2" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000126">
        <property type="protein sequence ID" value="CDD29155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29155">
        <property type="protein sequence ID" value="CDD29155"/>
        <property type="gene ID" value="BN815_01072"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008833">
        <property type="term" value="F:deoxyribonuclease IV (phage-T4-induced) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00019">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00152">
        <property type="entry name" value="Nfo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001719">
        <property type="entry name" value="AP_endonuc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018246">
        <property type="entry name" value="AP_endonuc_F2_Zn_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21445">
        <property type="entry name" value="PTHR21445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00518">
        <property type="entry name" value="AP2Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00587">
        <property type="entry name" value="nfo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00730">
        <property type="entry name" value="AP_NUCLEASE_F2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00731">
        <property type="entry name" value="AP_NUCLEASE_F2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51432">
        <property type="entry name" value="AP_NUCLEASE_F2_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="8">
        <location>
            <begin position="20"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="224"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="277" mass="30179" checksum="A9A29DA6758D37BD" modified="2013-07-24" version="1">MLKIGCHLSSAKGYLAMGKEAIKIGANTFQFFTRNPRGGKAKPLDLEDVAAYRAFAQEQGLFPILAHAPYTLNACAADEGLRTFARETMADDLARLEHIPGSLYNFHPGSHVKQGPEVGIALIAEHLNAILTPEQSTTVLLETMAGKGSEVGRSFEELRAILDRVELSDKLGVCLDTCHVSDGGYDIAGDLDGVLEEFDKVIGLGRLKAIHLNDSMNPLGSHKDRHQKLGEGTLGLEALERIINHPALRELPFYLETPNDLAGYAREIAMMKEAYQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y638</accession>
    <name>R6Y638_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00333</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31403">
        <property type="protein sequence ID" value="CDD31403"/>
        <property type="gene ID" value="BN815_00333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="71"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="118"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="265"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="75"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="31257" checksum="CC07B99FA07D16EC" modified="2013-07-24" version="1">MNGKAKEHRGGQLREKVMQVVFLIAACISILAVALICIYLFANGLPAIAKIGPFEFLLGTDWRPNADHYGIFPMIIGSIYVTAGAIIVGVPLGLLAAIYMAKFCPAPLYKILKPAVDLLAGIPSIVYGFFGLMVIVPLVQDLFGAPSGQNMLTASILLGIMILPTIISVSESSIRAVPDSYYEGALALGASHERSVFFVTVPAAKSGIMAGIILGVGRAIGETMAVIMIAGNQPRIPDSLLEGVRTLTGNIVMEMGYAQGLHREALIATGVVLFVFILIINLLFSILKRKESKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6G4</accession>
    <name>R6Y6G4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplO</name>
        <name evidence="10" type="ORF">BN815_00384</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31508">
        <property type="protein sequence ID" value="CDD31508"/>
        <property type="gene ID" value="BN815_00384"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01341">
        <property type="entry name" value="Ribosomal_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036227">
        <property type="entry name" value="L18e/L15P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030878">
        <property type="entry name" value="Ribosomal_L15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005749">
        <property type="entry name" value="Ribosomal_L15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001196">
        <property type="entry name" value="Ribosomal_L15_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021131">
        <property type="entry name" value="Ribosomal_L18e/L15P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12934">
        <property type="entry name" value="PTHR12934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00828">
        <property type="entry name" value="Ribosomal_L27A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52080">
        <property type="entry name" value="SSF52080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01071">
        <property type="entry name" value="rplO_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00475">
        <property type="entry name" value="RIBOSOMAL_L15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L18e/L15P" evidence="9">
        <location>
            <begin position="28"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="15193" checksum="1FBFAB904F9357DB" modified="2013-07-24" version="1">MKLNQLTATPGATKARKRIGRGYGAGTGKTAGKGHKGQKARAGHGMRPGFEGGQMPMQRRLPKRGFNNIFAKEIVSINVGTLNKFEDGASVDAAALIEAGILKKDCDGVKILSNGTLTKKLTVKATAFSAAAKEKIEAAGGKAEVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6U5</accession>
    <name>R6Y6U5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31688">
        <property type="protein sequence ID" value="CDD31688"/>
        <property type="gene ID" value="BN815_00444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="226" mass="24460" checksum="5F6593A0BACF8865" modified="2013-07-24" version="1">MRRLLLELKIAGINFPLVTAALSLALVLFAALAGELLDFAPIAFEVVFPLYAAIAVGEWSRFRSDAAFEAIAAQSPARFPWMLCRFFAVFVTVSLFAFATTLAAVWVRPGLALEEMLLLYLPTAFFFASVAALVGGLSPQEHLPTLVCGLLWLVALLTRSLLRLPGVEYVYPFLRFAGDQHGVWLWSKAALAGIGLLLWAALGLLAEKPPQAGPALTTPIHKPGKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y715</accession>
    <name>R6Y715_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Probable nicotinate-nucleotide adenylyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) diphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Deamido-NAD(+) pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nicotinate mononucleotide adenylyltransferase</fullName>
            <shortName evidence="6">NaMN adenylyltransferase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nadD</name>
        <name evidence="8" type="ORF">BN815_00462</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + H(+) + nicotinate beta-D-ribonucleotide = deamido-NAD(+) + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:22860"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="EC" id="2.7.7.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; NAD(+) biosynthesis; deamido-NAD(+) from nicotinate D-ribonucleotide: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the NadD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.18" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31758">
        <property type="protein sequence ID" value="CDD31758"/>
        <property type="gene ID" value="BN815_00462"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004515">
        <property type="term" value="F:nicotinate-nucleotide adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02165">
        <property type="entry name" value="NMNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00244">
        <property type="entry name" value="NaMN_adenylyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005248">
        <property type="entry name" value="NadD/NMNAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00482">
        <property type="entry name" value="TIGR00482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4 6" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="7">
        <location>
            <begin position="5"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="201" mass="22601" checksum="004771E6C1F024B8" modified="2013-07-24" version="1">MKTGIYGGTFNPIHNGHLHIVEEFRRGLGLDRVLLIPTRVPPHKAAPDLASAGERFAMCRLAAQGKPWLELSDIEMRREGKSYTAETLEELSALYPQDQFYLLMGEDMFLTLGRWYRPETIFSLASVCTTPRSPDGLDALRQKALEYTGQFQARCFLEHIPYLPISSTQVRQAVARGEDVSGLVPQAVAAYMKERGLYRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7N3</accession>
    <name>R6Y7N3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Glycerol-1-phosphate dehydrogenase (NAD(P)(+))</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00580</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27309">
        <property type="protein sequence ID" value="CDD27309"/>
        <property type="gene ID" value="BN815_00580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032837">
        <property type="entry name" value="G1PDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016205">
        <property type="entry name" value="Glycerol_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43616">
        <property type="entry name" value="PTHR43616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13685">
        <property type="entry name" value="Fe-ADH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="3" id="KW-0533">Nickel</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD27309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="246" mass="26249" checksum="9A49AA85173DF47C" modified="2013-07-24" version="1">MDGYASTVAPTILDGFKTTLPAVYPAAIVADVDILKDAPMPMLTAGFGDIIGKFTSLADWRLSHQLNGEYYCPEVAGVIEAAVETCAANAQALAQREPQAIQAVTEALILSGLAMGMVGVSRPASGAEHQMAHYWEMDALRRGEEHPLHGNAVGVGTVLAASLYEMAAEYLPQGFAAPDKGQILACLQAAGSCADPKELGIRRELCLESLLHAMELRDRFTVQKLLEQKGKLSLCAQELVARYYGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7Q4</accession>
    <name>R6Y7Q4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27329">
        <property type="protein sequence ID" value="CDD27329"/>
        <property type="gene ID" value="BN815_00593"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13443">
        <property type="entry name" value="HTH_26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="8222" checksum="2AFA6354B8A36ED6" modified="2013-07-24" version="1">MPVSYDKLWKMLIDKKMNRTDLKDAAGISFNVLAKMGRNEFVSMESLHKICHTLSCDIGEIMEFTDNDEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Z9</accession>
    <name>R6Y8Z9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01616</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30395">
        <property type="protein sequence ID" value="CDD30395"/>
        <property type="gene ID" value="BN815_01616"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15664" checksum="80D61BE9BFEB50CB" modified="2013-07-24" version="1">MNNEKQKILDMLEKGTITPADAAKLLECLGESQREETALVRQSAQRMKGKKLRVQVEGSTEESEDLHVNVSVPLVLARYADNFLSTCLPASAAEGMKAQGIDLRQLNLGAIVDVFEELEEDIVNVRVKDAHNDLLVRVYVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y922</accession>
    <name>R6Y922_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="16">UDP-N-acetylenolpyruvoylglucosamine reductase</fullName>
            <ecNumber evidence="16">1.3.1.98</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="16">UDP-N-acetylmuramate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="primary">murB</name>
        <name evidence="18" type="ORF">BN815_01636</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 16">Cell wall formation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16">
            <text>NADP(+) + UDP-N-acetyl-alpha-D-muramate = H(+) + NADPH + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:12248"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="EC" id="1.3.1.98"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 16">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 16">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 16">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the MurB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.98" evidence="16"/>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30415">
        <property type="protein sequence ID" value="CDD30415"/>
        <property type="gene ID" value="BN815_01636"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008762">
        <property type="term" value="F:UDP-N-acetylmuramate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.78.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00037">
        <property type="entry name" value="MurB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003170">
        <property type="entry name" value="MurB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011601">
        <property type="entry name" value="MurB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036635">
        <property type="entry name" value="MurB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21071">
        <property type="entry name" value="PTHR21071"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02873">
        <property type="entry name" value="MurB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56194">
        <property type="entry name" value="SSF56194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00179">
        <property type="entry name" value="murB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 16" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="7 16" id="KW-0132">Cell division</keyword>
    <keyword evidence="11 16" id="KW-0133">Cell shape</keyword>
    <keyword evidence="15 16" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6 16" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 16" id="KW-0274">FAD</keyword>
    <keyword evidence="8 16" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10 16" id="KW-0521">NADP</keyword>
    <keyword evidence="13 16" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12 16" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="17">
        <location>
            <begin position="33"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="active site" evidence="16">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="16">
        <location>
            <position position="228"/>
        </location>
    </feature>
    <feature type="active site" evidence="16">
        <location>
            <position position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD30415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="32341" checksum="C518B2201ADDA8E2" modified="2013-07-24" version="1">MELCYTPFDQAAQALGIPVAVGEPMSRHTTFQIGGPADRFAAVETLPQLKALLQALESQGLPYLVLGKGSNLLVSDKGIRGAVLLLSGEFKAVTLLEDGLVRAGAGASLASVCRFAQEHSLTGLEFAWGIPGSVGGAAYMDAGAYGGEMKDVVERVRHLTPAGEEGEAAGEALQFAYRKSRYTGGRDIITFVEYRLAPGDPAQISAQMEDLMARRKSKQPYDMPSAGSVFKRPEGYYAAALIEECGLKGRRVGGAQVSEKHAGFIVNTGGATCQDVLGLIGEIQREVFAQKGVRLETEVRVTGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y961</accession>
    <name>R6Y961_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01667</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30450">
        <property type="protein sequence ID" value="CDD30450"/>
        <property type="gene ID" value="BN815_01667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="533"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="593"/>
            <end position="656"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="659"/>
            <end position="719"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="434"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="719" mass="76206" checksum="0B8D232E778413DF" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y966</accession>
    <name>R6Y966_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PF13031 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01672</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30455">
        <property type="protein sequence ID" value="CDD30455"/>
        <property type="gene ID" value="BN815_01672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024997">
        <property type="entry name" value="DUF3892"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13031">
        <property type="entry name" value="DUF3892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="10348" checksum="0F3BFD5CA33191F6" modified="2013-07-24" version="1">MKQKNGRIGGLPANINIMNPVPNKDAKSITGLVRKNGKVSGYELSDGRVLSKREGVALAKQGGIRGVAIASRNGSEYLRSLPDGTASNNLGDLPSSSQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9M7</accession>
    <name>R6Y9M7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport system inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01811</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30600">
        <property type="protein sequence ID" value="CDD30600"/>
        <property type="gene ID" value="BN815_01811"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="286"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="115"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="317" mass="34950" checksum="07B0ADB7A30D3193" modified="2013-07-24" version="1">MEKIDKSRFAWVGSDPEKREGMARPSVTYWKDAIGRLKKNRVAMVCLCIIILLILSCVIIPWVTPFDSREQHLSCSNKGFFFSCVDERYEGQNLVHVFGTDRLGRDLLVRTFEGGRVSLMIAFAAVAVNLVVGMIYGGISGYFGGLADNIMMRIVEVINGIPYMIIVVLLMMVLPQGIFTMVIAYATTGWTGMARLVRGQCLSLKNQEFVVASEAMGAKAGRIIGKHLLPNALSVIIINVTLAVPSAIFTEAFLSYIGLGVPVPQPSWGMLAQEGASVFQLYPHQLWIPAIAISLTMLSFNLLGDGLRDAFDPRLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Y7</accession>
    <name>R6Y9Y7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YbbR-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28064">
        <property type="protein sequence ID" value="CDD28064"/>
        <property type="gene ID" value="BN815_00750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012505">
        <property type="entry name" value="YbbR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07949">
        <property type="entry name" value="YbbR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="471" mass="50354" checksum="0E3C2C31BA30B2A9" modified="2013-07-24" version="1">MNEEKKRPETPETPKKKNAISLGKIFYHNTFVLAFSFVVAVVTWFLMYANSAERNVVIHDVPITQQVSSAAQEEGLQIFSMSHTTADVEVSGNNLLTSQLSASDFEVSVTLNPTSTQLEGNTLQKMTLQVRAVKANTMGSYEIASVSPSEVTVEYDRVREVNLPIESNIQVRSDTGYYAGTPVLSADNVTISGPASSVDRISRVAVNYQVETALREETSFSCPIRLYDANDQEITDWSGLYLTLNVESVDVTVPVIPVKTVSLVASTLHQPEGFSESRIQIEPAEIAIVGTSEVLSGINEIQLDSVIDFADLTAGTNNTITSDITLPTGVRNISTTGETTSQATVTINLNGYEQASVSVSSANIQVVNAPSGVEPTLATTSLAVSVVGPEAQVTRVTGDSISVQVDLSNFQNQTGTVEVPATVTLTGSLADSCWVVDEYTVSVNIPGVQAAAARTMRTESSEDNVAAAPQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA50</accession>
    <name>R6YA50_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01999</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000321">
        <property type="protein sequence ID" value="CDD30795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30795">
        <property type="protein sequence ID" value="CDD30795"/>
        <property type="gene ID" value="BN815_01999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="213" mass="23398" checksum="BAFAF3D4CEA4AC7B" modified="2013-07-24" version="1">MPPGAAKGRRQGWAHRPRLPLRPPSKALNKHCPETDMHSAPWTKLSSWMGQAWWTSSISSRDISRESTARSAPKSHSSFTPAGVWRLIWVEACRGSWGARCRSKENSPMSCTSTASTGRVHKYSTNSNAWGSSFSFSKVFTVTWTRTPRAWQNRTASASCSREKFWALARAPKAGPPRYTASAPAYTAARRGSGPPAGANTSKYCSFISSQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA88</accession>
    <name>R6YA88_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02027</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000331">
        <property type="protein sequence ID" value="CDD30840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30840">
        <property type="protein sequence ID" value="CDD30840"/>
        <property type="gene ID" value="BN815_02027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="33167" checksum="9BC8EB971E5C390F" modified="2013-07-24" version="1">MTFWGELTDGTELLLGEPMEAQLLYDSDAPASQLRAVFPAEKQWEDLAVVRVFHQGQVAFGGIVDEQNTALSGESFTVELIARSWEALLLDNEARPAVLRSPSLGLLWERYFQPLGLTSVVGDQSPKAGELAVEKGTSCWELLETFCRDYLGTAPWVDGKGTLHCEGPQETKVTAGRVLSAELSRLPCKQLSAVWQQSFRGTYDTPFRGAAGVKRQRYVSMEDGRDPRELLRQGERESWLLSVECQGNSWPGPGALVTVEAPRLGRFEDCPLRQARYIRDSRGERTRFVLERGKAVCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA97</accession>
    <name>R6YA97_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">Argininosuccinate synthase</fullName>
            <ecNumber evidence="2 9">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">argG</name>
        <name evidence="10" type="ORF">BN815_02037</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-aspartate + L-citrulline = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 9">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the argininosuccinate synthase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="2 9"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30850">
        <property type="protein sequence ID" value="CDD30850"/>
        <property type="gene ID" value="BN815_02037"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01999">
        <property type="entry name" value="Argininosuccinate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00005">
        <property type="entry name" value="Arg_succ_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023434">
        <property type="entry name" value="Arginosuc_synth_type_1_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="PTHR11587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="SSF69864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00564">
        <property type="entry name" value="ARGININOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00565">
        <property type="entry name" value="ARGININOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3 9" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="11"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00029916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="408" mass="45388" checksum="6200E43C26D16580" modified="2013-07-24" version="1">MANEIKKVVLAYSGGLDTSIIIPWLKENYNNCEVIAVSGDVGQGTELDGLEEKAKKTGASKLYVLDLKEEFIQDYVYPTVKAGAVYENKYLLGTSFARPIIAKGIVDIAKKEGADAICHGCTGKGNDQVRFELAIKAFAPDMKIIAPWRIWDLKSREEEIEYAEAHDIPLKISRETNYSKDKNLWHLSHEGLDLENPANEPQYNKPGFLELGVSPEQAPDEPTYITLHFEKGVPTQLDGETLTGVEMVSKLNELGGKNGIGLADIIENRLVGMKSRGVYETPGGTILYHAHNKLEELCLDKETYHYKQQVALKFADLVYNGQWYTPLRQALSAFVDSTQETVTGDVKLKLYKGNIIDAGVTSPYSLYDEEIATFDEDEVYNQADSAGFINLFGLPIKVQAKKGLTYDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAK9</accession>
    <name>R6YAK9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VTC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00811</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28309">
        <property type="protein sequence ID" value="CDD28309"/>
        <property type="gene ID" value="BN815_00811"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.100.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018966">
        <property type="entry name" value="VTC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042267">
        <property type="entry name" value="VTC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09359">
        <property type="entry name" value="VTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VTC" evidence="1">
        <location>
            <begin position="19"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="236" mass="27080" checksum="62D232476D0503FE" modified="2013-07-24" version="1">MEETAAMAIPATTTEPRLRHEEKHQVNLREALVLSQRLEKLFPRDPHAGPEGNYQVVSLYYDDPYDTALRQKLDGVNRREKFRLRYYGEKPAFFKLEKKYKVKGLCGKGSCRLSREEGERLLRGDFAFLLEKEEPLAREFYAKLRRGLAPKTVVRYTREAFLYAPGNVRVTLDGDIRAGAPERFLIPQKLLPALGGLAVVEVKYDAFLPEIVKLAVQVPNRQGTACSKYALCRRYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAM7</accession>
    <name>R6YAM7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00821</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28329">
        <property type="protein sequence ID" value="CDD28329"/>
        <property type="gene ID" value="BN815_00821"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="140"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="47679" checksum="648E997789FFE51F" modified="2013-07-24" version="1">MKAPVTFAIAGFGDRGSTYASMQKLFPEKMKVVAVADLDPRKVEKARQLYDIPQENCFSSAEEMLEQEKLADVMVVSTMDRQHVGHAIPALRKGYNILMEKPISPELDKCKEILEVAKDCPGKIIVCHVLRYTTFYNKLKELISSGRIGDVVSICANENVGYWHQAHSFVRGNWRNSQETSPMILQKSCHDMDILTWLLGKKCKAVSSFGSTRLFKPECAPEGAALRCLDGCKAKEKCLFDAEKIYITSPKTGLATGSSWMSSVLSVENTMESTYKALREGPYGRCVYHCDNDVVDHQQTNLLMEDGSTISFTMCAFTESCYRYFKAMGTQGEIEADMLSNIIHVREFGKEEETIDVGKLSSDLKGHGGGDSGIIQDFLEMLLNDAEPNERTTTLEHSMESHFIALAAEESRLHGGQVVDLEAFKQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBJ9</accession>
    <name>R6YBJ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication initiation and membrane attachment protein DnaB/DnaD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00895</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28619">
        <property type="protein sequence ID" value="CDD28619"/>
        <property type="gene ID" value="BN815_00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.630">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034829">
        <property type="entry name" value="DnaD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006343">
        <property type="entry name" value="DnaD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07261">
        <property type="entry name" value="DnaB_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158499">
        <property type="entry name" value="SSF158499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01446">
        <property type="entry name" value="DnaD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DnaB_2" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="DnaB_2" evidence="1">
        <location>
            <begin position="61"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="18107" checksum="C8038DE4151A529B" modified="2013-07-24" version="1">MLLHYAKDVGKTGTAYLDSVARDWAESGVFTLEAAEKKLQELEEHRQAWAKVQSAAGLPRRAPSRKEEDAAYRWVYQWKFTGEMLRAAYERCVDNTGKFNISYINKILEGWHKQGARNLQEVEALEAKKKEEREQGTSYDIDQLEKMSFFDLPEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBP2</accession>
    <name>R6YBP2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00012</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000407">
        <property type="protein sequence ID" value="CDD31350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31350">
        <property type="protein sequence ID" value="CDD31350"/>
        <property type="gene ID" value="BN815_00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="82"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="131"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="155"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="196" mass="21511" checksum="6A2895B9CC4B0205" modified="2013-07-24" version="1">MRKGKLGVVVCLYPILGFVCVILNQPLLCALIFGFVLVAERDEWAGRQCLQAVGLSAIAVVLRELLVYSVNLFPVYIDFFHFLSTAFGTLSALVYLAAIITSMVAITRVMKDQEASLPGLDRLAYRAYGKQKPRPMPGQYPPPYGVQPPYAHSYQQPGQPYPPQPGPYQQPPQAPQQPQPPVPPQNGPQQPGGPQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCN3</accession>
    <name>R6YCN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01023</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29004">
        <property type="protein sequence ID" value="CDD29004"/>
        <property type="gene ID" value="BN815_01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06533">
        <property type="entry name" value="Glyco_transf_WecG_TagA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004629">
        <property type="entry name" value="WecG_TagA_CpsF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34136">
        <property type="entry name" value="PTHR34136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03808">
        <property type="entry name" value="Glyco_tran_WecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00696">
        <property type="entry name" value="wecG_tagA_cpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="26464" checksum="4ABD5C112F7FD5EB" modified="2013-07-24" version="1">MAIKEYLRRVFPGTAEEFCQKAGDAMVSGKRLFVVTANPEILMHAGEDPAIRQLLLAEETAVVPDGISVVKAMNLLGLPAKERITGVDLADKLLRRAGEQGKSVYLLGAKEEVVSALAQKLKAQYPQMEVRYKNGYGKDKDADFREIEAFQPDLVLVALGVPAQEKLIARHLGNFSKGVFIGVGGSFDVLSGSKRRAPALFVKTNTEWLYRILREPSRLGRFYRNNIKFLGEVRKEAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFL1</accession>
    <name>R6YFL1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Adenosine deaminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01375</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000194">
        <property type="protein sequence ID" value="CDD30109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30109">
        <property type="protein sequence ID" value="CDD30109"/>
        <property type="gene ID" value="BN815_01375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019239">
        <property type="term" value="F:deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001365">
        <property type="entry name" value="A_deaminase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006330">
        <property type="entry name" value="Ado/ade_deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11409">
        <property type="entry name" value="PTHR11409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00962">
        <property type="entry name" value="A_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01430">
        <property type="entry name" value="aden_deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="A_deaminase" evidence="3">
        <location>
            <begin position="3"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="34684" checksum="9C6A845245C35BB6" modified="2013-07-24" version="1">MIDLHLHLDGSLAPALVRELAQTQGLPLPAGSLEEALSAPADCQSLNDYLRCFDLPVVVLQTRQALTQSVQELTARLQGQGLLYAELRFAPSQHTRQGLTQRQVVEAALAGLPQPPAQGRWSFGCQLILCCMRGGEEAANRETVAVAAHFLGKGVCAVDLAGAEALYPTQEYQPLFAYAQSLGVPFTLHAGEAAGPESVWQALELGAARIGHGVRAGEDPRLVEELARRRVPLELCPTSNLQTKAVPDLARFPLKEYLAQGVAATVNTDNMTVSRTTLAQEFASLRLSPQERRAVLLHSVEAAFLPPAQKAALRQAVEAALAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFP9</accession>
    <name>R6YFP9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ammonium_transp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01399</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30154">
        <property type="protein sequence ID" value="CDD30154"/>
        <property type="gene ID" value="BN815_01399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="49"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="6">
        <location>
            <begin position="10"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="9350" checksum="3A92B0C667290289" modified="2013-07-24" version="1">MTFSAVNTIWVLVGAALVFFMQAGFSLCEAGFTRAKNTGNILMKNLMDFCIGTPCFWLVGFGFMFGSGTALFGTIDPLIMGLVWPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFT3</accession>
    <name>R6YFT3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Predicted phosphohydrolases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01437</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30194">
        <property type="protein sequence ID" value="CDD30194"/>
        <property type="gene ID" value="BN815_01437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="16337" checksum="D38248131DA70E95" modified="2013-07-24" version="1">MSLAGRTWQDSLRNAWTRDNLGRTQWMLSRLEARMAAYPGKKLVLVTHMLPIKEFTVPQEMANWSYFNAFLGTRRLGELYRRYPVEVAICGHVHYRKTLEKDGITWLCRCLNYHSEWRQEYGGDTLSQQIAHAAEVMEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFZ8</accession>
    <name>R6YFZ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30269">
        <property type="protein sequence ID" value="CDD30269"/>
        <property type="gene ID" value="BN815_00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="16"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="37711" checksum="8E58A54FEF14E809" modified="2013-07-24" version="1">MQYTKLGNSDLYVSRICMGCMGFGNAATGQHSWTLDEAASREIIKRGLELGVNFFDTAIGYQNGTSEEYLGRALKDFARREDVVVATKFPGRSPQEMEAGVTGQQHVANLLDQSLQHLGMDYVDLYIYHMWDYATPLYEILEGLSNAVKAGKARYVGISNCFAYQLAKANALAEKEGFPKFLSIQGHYNLIFREEEREMAKLCAEDNIAMTPYSALAGGRLSRHPGETSKRLEEDSYAKFKYDATAQQDGVIIGRVEELAEQHGVSMTEISLAWLLQKVTAPVVGATKLHHIEGAAKAVELELSPQEMAYLEEPYVPHKLVGVMAQNTPAAAGAKQVWTVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG20</accession>
    <name>R6YG20_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cof-like hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30299">
        <property type="protein sequence ID" value="CDD30299"/>
        <property type="gene ID" value="BN815_01533"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000150">
        <property type="entry name" value="Cof"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00099">
        <property type="entry name" value="Cof-subfamily"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="30021" checksum="F57B82504A8022B1" modified="2013-07-24" version="1">MNIALLAFDLDGTTITQHQYLPQENRLALEDAAAQGILLVPASGRMKDFLPREITALPGVRYAITANGAGVYDLATGEAVWQRLIPNEKARQVQAVLEEYDLFVEYYSQGKATTRQGDPERAFTHFGLPESKRHFLDKDYCLVPALGGHLQESGLQPEKINLPYLPTPALRQEVWQRLEALGGLVLTSSIPDNIEVNAQGADKGSALRALAERLGIPREKVMALGDNGNDVTMLQYAGVSVAMGDGSPEAKAAARFLTAPHDQNGLAQAVRRYALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG65</accession>
    <name>R6YG65_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00650</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27536">
        <property type="protein sequence ID" value="CDD27536"/>
        <property type="gene ID" value="BN815_00650"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="217" mass="23982" checksum="B431628C039F4ED4" modified="2013-07-24" version="1">MKVLFIGNSHTFVHYVPARVARFCASHGKPVETTMLTHPGVGLDWHLEQSQTYYNLLYGGYDAVVLQHNAHPFPGRDSLLQAGERMAALVPDQTKIYLYMTWSEKNNPQGQEAMSTAYEELGRRIGATVCPVGRVWQQVRKDHPEEELYFTDGEHSSVLGASLAGAVIGRTLLGMDLSPILCFEDAKALETLPLDPRMLDLVKEGGGLKLKPLAGHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGC9</accession>
    <name>R6YGC9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HAD phosphatase family IIIA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27611">
        <property type="protein sequence ID" value="CDD27611"/>
        <property type="gene ID" value="BN815_00671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008962">
        <property type="term" value="F:phosphatidylglycerophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006549">
        <property type="entry name" value="HAD-SF_hydro_IIIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010021">
        <property type="entry name" value="PGPP1/Gep4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19288:SF25">
        <property type="entry name" value="PTHR19288:SF25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01662">
        <property type="entry name" value="HAD-SF-IIIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01668">
        <property type="entry name" value="YqeG_hyp_ppase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18707" checksum="1B9087C04D7C0EE5" modified="2013-07-24" version="1">MHIFQPTAVRERVTEITPQFLQSLGVRALLLDVDNTLATYTSHAPSPGALEWVKAMGEAGFRMIIISNNFKGRVGSFGAVFGLDTLSFALKPLPVGYLRAAKRLRVKPQECVIIGDQIFTDIVGANLCGMKSVLLSPIEPEEGFTFKVRRHFERGLREKFSSRKEVLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGP9</accession>
    <name>R6YGP9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator Fur family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01737</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30524">
        <property type="protein sequence ID" value="CDD30524"/>
        <property type="gene ID" value="BN815_01737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="15155" checksum="38265F023D26A31C" modified="2013-07-24" version="1">MEKRENFSRKRMAILSALQETTVHPTADWVYAKLKPRYPNLSLGTVYRNLKKFCETGKAVSVGVINGQEHFDGRVEPHAHFVCKRCGAVLDVPEEFFKPQELAELSERFHLKLENARVSFEGVCPQCEEGLSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGR2</accession>
    <name>R6YGR2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Radical SAM core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01747</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30534">
        <property type="protein sequence ID" value="CDD30534"/>
        <property type="gene ID" value="BN815_01747"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008792">
        <property type="entry name" value="PQQD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024025">
        <property type="entry name" value="SCIFF_rSAM_maturase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023867">
        <property type="entry name" value="Sulphatase_maturase_rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43273">
        <property type="entry name" value="PTHR43273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05402">
        <property type="entry name" value="PqqD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01384">
        <property type="entry name" value="thioether_bond_formation_requi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03974">
        <property type="entry name" value="rSAM_six_Cys"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="7">
        <location>
            <begin position="96"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="460" mass="51440" checksum="1156EE4E06C09B5E" modified="2013-07-24" version="1">MVHQYQLNGYNIVLDSCSGSIHVVDEVAYDIIALFETHTPEEIVAAMLEKYGGRPDVTEEDVRGCIQDVQALKDAGKLFSPDTFADMAGTFKERSGNVVKALCLHVAHTCNLNCEYCFASQGKYHGDRALMSFEVGKQALDFLMEHSGTRRNLEVDFFGGEPLMNWDVVKRLVEYARSVEKERGKNFRFTLTTNGMLIDDDVIDFANREMSNVVLSLDGRKEINDRTRVDYAGNGSYDRIVPKFQKLVAARGGKDYYMRGTFTHANPDFTKDLFHMADDLGFTELSMEPVVCAPDDPAALTPEDIAIVKEQYEILAKDMLRREKEGHPITFYHYMLDLTGGPCVYKRISGCGSGTEYMAVTPWGDLYPCHQFVGEEAYKLGDVWNGVTNTALREEFRACNAYARPDCAGCWAKLYCSGGCAANAYHATGTIRGVYEAGCELFRKRIECAIMMKAAQEAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGR7</accession>
    <name>R6YGR7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Alpha-L-rhamnosidase</fullName>
            <ecNumber evidence="2">3.2.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01752</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal non-reducing alpha-L-rhamnose residues in alpha-L-rhamnosides.</text>
            <dbReference type="EC" id="3.2.1.40"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.40" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30539">
        <property type="protein sequence ID" value="CDD30539"/>
        <property type="gene ID" value="BN815_01752"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030596">
        <property type="term" value="F:alpha-L-rhamnosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016007">
        <property type="entry name" value="Alpha_rhamnosid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035396">
        <property type="entry name" value="Bac_rhamnosid6H"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035398">
        <property type="entry name" value="Bac_rhamnosid_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013737">
        <property type="entry name" value="Bac_rhamnosid_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008902">
        <property type="entry name" value="Rhamnosid_concanavalin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05592">
        <property type="entry name" value="Bac_rhamnosid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17389">
        <property type="entry name" value="Bac_rhamnosid6H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17390">
        <property type="entry name" value="Bac_rhamnosid_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08531">
        <property type="entry name" value="Bac_rhamnosid_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010631">
        <property type="entry name" value="A-rhamnsds"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_rhamnosid_N" evidence="5">
        <location>
            <begin position="132"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_rhamnosid" evidence="4">
        <location>
            <begin position="309"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_rhamnosid6H" evidence="6">
        <location>
            <begin position="411"/>
            <end position="772"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_rhamnosid_C" evidence="7">
        <location>
            <begin position="774"/>
            <end position="846"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF17389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="853" mass="95219" checksum="448BA37C0A766F03" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHI9</accession>
    <name>R6YHI9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoglycerate mutase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30859">
        <property type="protein sequence ID" value="CDD30859"/>
        <property type="gene ID" value="BN815_02046"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001345">
        <property type="entry name" value="PG/BPGM_mutase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00175">
        <property type="entry name" value="PG_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="21427" checksum="18970E1FC67E8D5C" modified="2013-07-24" version="1">MKFYVTRHGQTAWNRENLVCGITDLPLDETGREQARQTAQKLKDTHLDRVIVSPLLRARQTAELICQGRVLPLSIDARVREQNYGIYEGVSRFDEGFLSHKRSFATRYPGGESHMSTAVRVYSFLEDTARNCPGESVLVVCHGGICRIIESYFHDMTNEEFFQFNMGNCEVREYQLELPQGEGGETW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHP1</accession>
    <name>R6YHP1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Dihydroxy-acid dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02081</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30919">
        <property type="protein sequence ID" value="CDD30919"/>
        <property type="gene ID" value="BN815_02081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009082">
        <property type="term" value="P:branched-chain amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="575" mass="62395" checksum="5663B8250A8C28DB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI19</accession>
    <name>R6YI19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31039">
        <property type="protein sequence ID" value="CDD31039"/>
        <property type="gene ID" value="BN815_02193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="28499" checksum="2064FDE91F378B5F" modified="2013-07-24" version="1">MDKYVAAEEEGAEALPAQAHIYAWQDGALQELHTASADNSITSYTAIHFGKLGRDLSAVVVDGAKADGSMTTQVFTLEDGLLLNSPAGVNSESYQNPFSRPSAAVFTSQDVNGDGLLEIPVASQLPAIPEDVSLDSTSFLVEWVNADTSGNYETALTALMNLGENYWFRLPASLVGKISASNNTAARSVTYTEVVTGEDGSQLLGSPLFTIRVFTRSAWDSRGETSGYEQLAAQGDLVFGIQTLTQDAEHLRAIAQIRSQFHVTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI69</accession>
    <name>R6YI69_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31089">
        <property type="protein sequence ID" value="CDD31089"/>
        <property type="gene ID" value="BN815_02242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="292"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="34980" checksum="D374BDE72EB74DA1" modified="2013-07-24" version="1">MKEGLVKQGLSAPEMGKINRYTRRAYTPEEVYAFSLVLCDNEVDRDWERFSLEALEGLRELFPGKTLLFDHERRSASQTARIYDTALETEPGKSTQAGEVYTKLTAKAYLPRTEKNREVIELIESGILKEVSVGCSMGRSVCSICGKERCGHVKGRLYDGQRCHQVLYEPQDAYECSFVAVPAQRAAGVVKQFQGEAPGDVVKRLEAAGEEGLSLTKAQAKALLAQVKQWQEQARWGRSYRERLEGDVLKYSAILQPSLPRAVMESAVKGLSVGELSQMAQTYEKMAGEKLPLKPQLAPQQGRAPGEDNGEFRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIB6</accession>
    <name>R6YIB6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Renal dipeptidase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02283</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31139">
        <property type="protein sequence ID" value="CDD31139"/>
        <property type="gene ID" value="BN815_02283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070573">
        <property type="term" value="F:metallodipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008257">
        <property type="entry name" value="Pept_M19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10443">
        <property type="entry name" value="PTHR10443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01244">
        <property type="entry name" value="Peptidase_M19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51365">
        <property type="entry name" value="RENAL_DIPEPTIDASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="34639" checksum="7059BFFC13AD3175" modified="2013-07-24" version="1">MRYFDLHCDTMTECAVKDIPLRENTLHVSLEQVKDWEHYVQCYAVWLPDDLRGEAAWQRFLQVAERFAREVGENAGSLEQLRGPGDLDRLERQGRHGAILTVESGAVLGGKLERVQECKRLGVGMCTLTWNSATELGRGVMAPGRTGLTKFGRQAVKAMEKAGILIDISHASPELFWDVAEIAVKPLVASHSNAKAVCGHPRNLEKEQFEAIRDSGGLVGLNFYTAFLNDKPEQASMEDVLRHAEYFLALGGEDTLAMGGDWDGAELPPDMPGLSAIPALYELFLRHYPEPVVEKLFYGNAARLFRQENLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIJ9</accession>
    <name>R6YIJ9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cell division protein SepF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">sepF</name>
        <name evidence="7" type="ORF">BN815_02373</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer. Interacts with FtsZ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">Localizes to the division site, in a FtsZ-dependent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SepF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31229">
        <property type="protein sequence ID" value="CDD31229"/>
        <property type="gene ID" value="BN815_02373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01197">
        <property type="entry name" value="SepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023052">
        <property type="entry name" value="Cell_div_SepF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007561">
        <property type="entry name" value="Cell_div_SepF/SepF-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038594">
        <property type="entry name" value="SepF-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35798">
        <property type="entry name" value="PTHR35798"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04472">
        <property type="entry name" value="SepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 5 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0717">Septation</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="163" mass="18524" checksum="F47A21FBCCE78636" modified="2013-07-24" version="1">MAGLVEKLQKMWNPPDDEYDEYYEDEPEQEQESSRSSYSEPRRSSSYSFADFAPRGESSGGNRVVNINAKAQLQVVLFKPISFGEETRAIADELLKRHTVVLNLEKTEKDVSRRIVDFLSGVAYANNGKIKRIATNTFIITPYNVDLTGDDVLDELENNGLYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIP0</accession>
    <name>R6YIP0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31274">
        <property type="protein sequence ID" value="CDD31274"/>
        <property type="gene ID" value="BN815_00212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="605" mass="63659" checksum="6D46DF1057803334" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIT3</accession>
    <name>R6YIT3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Carbohydrate kinase FGGY family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00264</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31329">
        <property type="protein sequence ID" value="CDD31329"/>
        <property type="gene ID" value="BN815_00264"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="2">
        <location>
            <begin position="18"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="3">
        <location>
            <begin position="278"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="245"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="533" mass="57425" checksum="2379F1A757638CEE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJV8</accession>
    <name>R6YJV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28841">
        <property type="protein sequence ID" value="CDD28841"/>
        <property type="gene ID" value="BN815_00983"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="10484" checksum="2F355B3852C5B303" modified="2013-07-24" version="1">MPPKMPMISPLLMCRSMWERALRVAFLEYLKLTWSKSMEPSFTSITGFWGFCRVLSSESTSTIRSADSKDMVTITNIMETIIRLIKIWKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLJ1</accession>
    <name>R6YLJ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01155</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29441">
        <property type="protein sequence ID" value="CDD29441"/>
        <property type="gene ID" value="BN815_01155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="425"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="524" mass="59165" checksum="637EE660FAD3DBF6" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNH8</accession>
    <name>R6YNH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01401</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30156">
        <property type="protein sequence ID" value="CDD30156"/>
        <property type="gene ID" value="BN815_01401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="128"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="14673" checksum="E13DCC30EBA71814" modified="2013-07-24" version="1">MSAATQDSAGQAPAIPQGQEGMGSPPELPSGEGPQEAPGQAAPDSASSATEENPASEAESSSGEGDTSSGEESPSAPEEQASPEEAGGAMGQEPPTQPAEGAADAGIEAQPGALGQGQSQASSATEQWVLLGGSFLALGMGLAAAGLYHRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNK8</accession>
    <name>R6YNK8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oxidoreductase aldo/keto reductase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01439</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30196">
        <property type="protein sequence ID" value="CDD30196"/>
        <property type="gene ID" value="BN815_01439"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="295"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="37756" checksum="89836B9ED08970B3" modified="2013-07-24" version="1">MQTVTLGRTGITVNKNGFGALPIQRVSADYAGMLLRKAYNAGITYFDTARSYSDSEEKMGLALSDVRENIIIATKTPSTTAEGFWQDLETSLRLLKTDYIDVYQFHNPAFCPKPGDGTGLYEAMEEAKKQGKIRFIGITNHRLGVAEEAAASGLYDTLQFPFCYLATERDIALVNLCKENHVGFISMKGLSGGLITNSAAAYAWQAEFDNALPIWGVQRESELDEFISYIDNPPTMDGELKAVIEKDRKELIGNFCRACGYCMPCPAGIVINQCARMSQLIRRSPSAGWLTPESQAMMMKIEDCLHCGQCKKKCPYGLDTPTLLQQNLEDYKNILAGKVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNM6</accession>
    <name>R6YNM6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01459</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30216">
        <property type="protein sequence ID" value="CDD30216"/>
        <property type="gene ID" value="BN815_01459"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="18805" checksum="C6193BBF5EBC3D9C" modified="2013-07-24" version="1">MTLGERIVHYRKRQGLSQEQLSQRLGVSRQSVSKWERDESLPEADKLPLLAKTLGVSLDALLSGEEEAPPQPAGPMPAKGGAVGKLAWLFRRWGWVGGLVLAAYGAFAFGLGLLARFLMGPMFPPLELLRQAGGPVRAAALGFQIITVAVLVVGGLAVVGGIIAAAVLYRRRPGGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNQ1</accession>
    <name>R6YNQ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01484</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000210">
        <property type="protein sequence ID" value="CDD30241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30241">
        <property type="protein sequence ID" value="CDD30241"/>
        <property type="gene ID" value="BN815_01484"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004291">
        <property type="entry name" value="Transposase_IS66_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024463">
        <property type="entry name" value="Transposase_TnpC_homeodom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024474">
        <property type="entry name" value="Znf_dom_IS66"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03050">
        <property type="entry name" value="DDE_Tnp_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13007">
        <property type="entry name" value="LZ_Tnp_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13005">
        <property type="entry name" value="zf-IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LZ_Tnp_IS66" evidence="5">
        <location>
            <begin position="45"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="zf-IS66" evidence="4">
        <location>
            <begin position="125"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_IS66" evidence="3">
        <location>
            <begin position="190"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="15"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="528" mass="60951" checksum="0C82B429FA573E21" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNS6</accession>
    <name>R6YNS6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00114</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30266">
        <property type="protein sequence ID" value="CDD30266"/>
        <property type="gene ID" value="BN815_00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="22"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="36489" checksum="C7A09A9FD937C524" modified="2013-07-24" version="1">MKLGVLTNVIGETPLKEALAYFKSLGAQMVEIGCGGYPGKDHCDPGVLLHDEAKFNEFVKTIEESGLEISALSCHGNPVHPNKEIAKQFDDDMRDAVLMAEKLGIHQINCFSGCPGDCPESKNPNWVVCAWPNEFCEVVDWQWKEVLIPYWKDFVAFAKAHGVNKIALEMHQGFCVYNTYTLKKLREAVGPEIGANLDPSHLIWQGMDPIQVIRALGGEAIFHVHAKDTKIDPINAPIDGTLDYRPYGDEIHRSWIFRSIGYGHDELFWKDFVSQLRLVGYDYVLSIEHEDSLMSKNEGLVKACDVLKRAITFEDKMTEARWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP07</accession>
    <name>R6YP07_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cation-transporting ATPase E1-E2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00121</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30346">
        <property type="protein sequence ID" value="CDD30346"/>
        <property type="gene ID" value="BN815_00121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006068">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00689">
        <property type="entry name" value="Cation_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="62"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="130"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="205"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="233"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="Cation_ATPase_C" evidence="5">
        <location>
            <begin position="87"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00689"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="28526" checksum="A21E75F042D133F9" modified="2013-07-24" version="1">MTGDGVNDAPALKAADIGCAMGITGTDVAKGAADMTLTDDNFATIVDAVREGRGIYANIKKVVGFLLGTNIGEVITVFAAMLLWHKTPLLSMQLLWINLVTDSLPAISLGMEAVENDVMEHSPKPKDEGIFAHGLGIQVVLQGCMFAVLTLIGFLLGERYGGSLEAGQTMAFMVLSLTQIVQAFNMRSEHSLFKIGVFTNHKLNWAALLSVVLVCLVLFTPVGIAFGMVTLPAWLYLCGLGLILVPLVVMELAKAVGLVKKRHGKKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPW4</accession>
    <name>R6YPW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase-like hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01827</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30616">
        <property type="protein sequence ID" value="CDD30616"/>
        <property type="gene ID" value="BN815_01827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="26109" checksum="ACF76F9C23EDE59E" modified="2013-07-24" version="1">MLDPQITTVLFDLDGTLLPMELEKFTNTYFGLLAKKAAPFGFQPEPLVAAVWKGTKAMVKNDGTETNDKRFWDTFAGEMGEEVLQLRPVFDGFYANEFHGAKAACEENPLARRAIDGLKAKGYDVILATNPIFPLVGVETRLSWVGLRPEDFSYITAYENSTTCKPNLAYYAEILRKTGKRPQECLMVGNDATEDTAALEQGIGVYLVTDCLLNPKGRDISGLPQGTFAAFLEFAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQG1</accession>
    <name>R6YQG1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methylglyoxal synthase</fullName>
            <shortName evidence="1">MGS</shortName>
            <ecNumber evidence="1">4.2.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mgsA</name>
        <name evidence="4" type="ORF">BN815_02008</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>dihydroxyacetone phosphate = methylglyoxal + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17937"/>
            <dbReference type="ChEBI" id="CHEBI:17158"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="EC" id="4.2.3.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methylglyoxal synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.3" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30821">
        <property type="protein sequence ID" value="CDD30821"/>
        <property type="gene ID" value="BN815_02008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008929">
        <property type="term" value="F:methylglyoxal synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019242">
        <property type="term" value="P:methylglyoxal biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00549">
        <property type="entry name" value="Methylglyoxal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004363">
        <property type="entry name" value="Methylgl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30492">
        <property type="entry name" value="PTHR30492"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006614">
        <property type="entry name" value="Methylglyox_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MGS-like" evidence="3">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="34"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="54"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1 2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006614-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14734" checksum="D6067A2FD878D2AA" modified="2013-07-24" version="1">MNIAITAHDAKKELMVQFCIAYCGILSRYTLCGTGTTSKMVSEATGLEIQRFLSGAQGGDQQIAARIACNEIDLLLFFRDPLNPKSHETANDMNLLRLCDMHNIPVATNIATAEVLIHGLERGDLDWRNILRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQG6</accession>
    <name>R6YQG6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02013</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000325">
        <property type="protein sequence ID" value="CDD30826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30826">
        <property type="protein sequence ID" value="CDD30826"/>
        <property type="gene ID" value="BN815_02013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040085">
        <property type="entry name" value="MJ0674-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016431">
        <property type="entry name" value="Pyrv-formate_lyase-activ_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43075">
        <property type="entry name" value="PTHR43075"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004869">
        <property type="entry name" value="PflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01099">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="55"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="63"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR004869-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32028" checksum="951BDE53E1C99BDC" modified="2013-07-24" version="1">MIPACRLCPRDCGVPRGERGSGVCRRGSEMRVARAALHFWEEPPISGSRGSGTGFFTGCTLGCVFCQNGQISHGPVEGRKVTPQELSDLFFDLIAQGAHNINLVTPTHFVPQIRQALLVKKLPVPVVYNTSGYERVETLRSLEGLVDIYLPDYKYDDPALAKALSRAEDYPQRAQAALAEMVRQVGAPVYDGEGLMTRGVLIRHLILPGHTKNSIACLERIRQLFPGIPVSLMAQYTPCGELDSFPELGRPITRREQEKVENALFELGLEGYTQSRKAKGAQYVPDWDMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQV8</accession>
    <name>R6YQV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02105</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 39 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000349">
        <property type="protein sequence ID" value="CDD30946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30946">
        <property type="protein sequence ID" value="CDD30946"/>
        <property type="gene ID" value="BN815_02105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000514">
        <property type="entry name" value="Glyco_hydro_39"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01229">
        <property type="entry name" value="Glyco_hydro_39"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00745">
        <property type="entry name" value="GLHYDRLASE39"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="4">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR600514-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="499" mass="56889" checksum="AD038A547E3840FE" modified="2013-07-24" version="1">MTERTYALSPDCGEKFYNQADYCIGTGRMGLALHKEYYDQLKLVQEHIGFSHIRGHGLFCDDMAIYQEYKNAQGETVTEYNFTYLDRVLDSYQELGLRPFLELGFMPGKMASGDQTVFYWKGNTTPPKDYAQWRALVQALLRHLLERYGQDALAWPLEVWNEPNLPGFWKGADKEEYFRLFSETIAAVKEVDSRFTVGGPAICGVKDVEWMQDFMEYCHQNSLPLDFVTRHFYTFDDPGFVGRYSYGGLRDPEISLEELRRSREIIDSYPEYKGLPMHITEFNTSYSPDSPVHDTTRNAAYIARLLACLGEMNESYSYWTFGDVFEEKGVPFTPFHGGFGLVANGCIPKPTFWTFAFFKELQGQCLLRNREAVAVQRPDGTVAGVAWNMSQETKGETSLTFTLPAQGEWCLLTKTVDEDHANPLKVWHDLGEPRQLTAAQTALLQESAQPLVSTQRLTAEDGQLSFTLRLKEDAVVSFQLLPAAFQGDRGYDYRRAVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR04</accession>
    <name>R6YR04_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative competence-damage inducible protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cinA</name>
        <name evidence="3" type="ORF">BN815_02145</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CinA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30986">
        <property type="protein sequence ID" value="CDD30986"/>
        <property type="gene ID" value="BN815_02145"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00885">
        <property type="entry name" value="cinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00226_B">
        <property type="entry name" value="CinA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036653">
        <property type="entry name" value="CinA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008136">
        <property type="entry name" value="CinA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041424">
        <property type="entry name" value="CinA_KH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008135">
        <property type="entry name" value="Competence-induced_CinA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02464">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18146">
        <property type="entry name" value="CinA_KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006728">
        <property type="entry name" value="CinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142433">
        <property type="entry name" value="SSF142433"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00200">
        <property type="entry name" value="cinA_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00199">
        <property type="entry name" value="PncC_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="2">
        <location>
            <begin position="4"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="418" mass="45159" checksum="3ED30FA56032E903" modified="2013-07-24" version="1">MNAEIISVGTELLLGQVVNLDTAIVAQELSGLGINLLYSAVVGDNVERLRHAVETAISRSGLLIMTGGLGPTTDDLTKETTAACAGKKLVLHQPSLERIQNYFNEKHVSENQEKQAWLPEGCHVFQNDNGTAPGCAFQAENGCTIIMLPGPPSELTPMLKNYVVPYLKGGQEYVIVSHNVHIFGRGEAPVAQMLDDLMDGQNPTLAPYAKEGECYMRVTAKAHTVEEADTLCQPLIEEIKRRVGDFVYSVDTESLEELVVSLLKAQGKTLATAESCTGGLLSKRLTDVSGASEVFHMGVVTYANQAKEDLLSVSHETLEQYGAVSPQTVREMAEGIVRRSGSSLGVGITGIAGPDGGTAEKPVGLIYIALSDGEHTWVTKRNPIGRTKSREWHRHCAASQALDMVRRYLEGLPVEADY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR73</accession>
    <name>R6YR73_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02190</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000362">
        <property type="protein sequence ID" value="CDD31036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31036">
        <property type="protein sequence ID" value="CDD31036"/>
        <property type="gene ID" value="BN815_02190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="28"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="347"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="381"/>
            <end position="388"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="595" mass="66906" checksum="2FC05115017FF8AB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS59</accession>
    <name>R6YS59_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phosphate transport system permease protein PstA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00332</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31401">
        <property type="protein sequence ID" value="CDD31401"/>
        <property type="gene ID" value="BN815_00332"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005672">
        <property type="entry name" value="Phosphate_PstA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00974">
        <property type="entry name" value="3a0107s02c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="39"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="129"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="91"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="32457" checksum="1B69C8F444AE2A59" modified="2013-07-24" version="1">MSDMAENMKQAKSAQDIVAVNKPTLQQAVKQYKKSPFSLFLRVIVTLAAVITVSVLLFLVAYIVIMGVPNLKPALFSLEYTSENASMLPALINTVIMTVMSLVVAVPVGIFSAIYLVEYAKRGNKLVGVVRITAETLSGIPSIVYGLFGYLFFGVSLGWSYSMIGGALTMSIMILPLIMRTTEEALMSVPDSFREGSFGLGAGKLRTVFRIILPSAMPGILSGIILGIGRIVGETAALMFTSGTVAQVAVNPMDSGRTLAVHMYNLLNEGLAREAAYATAVILLILVVGINALSSFVAKKFTKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSF1</accession>
    <name>R6YSF1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GP-PDE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00363</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31481">
        <property type="protein sequence ID" value="CDD31481"/>
        <property type="gene ID" value="BN815_00363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="36"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="309" mass="35220" checksum="795218C03C6863BA" modified="2013-07-24" version="1">MVVLLAAFFALALVLLLWLWAIGPQLPQADFSAFHKYDYAHRGLHNREKGVPENSLMAFELAARGGFGMELDVQLTQDGQVVVHHDRSLGRTCGVERNIDEMTCQELSGYRLFGTQEKVPLFSQVLELVDGRTPLIVEIKSYARQEELCQKTMALLEGYPGLYCVESFDPRVVRWFKRHHPGIIRGQLMCYKPQEDMPGWMAFIGRNLLTNFLTRPHFEAYDFTTRHNVSLRAARRVYGMQEVSWTLRSYEDYKAAKEDGCLCIFENFLPLETCAQKKFTFADLLAQAKTAAVCGIHRVEEPGKSTAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSK6</accession>
    <name>R6YSK6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsK</name>
        <name evidence="10" type="ORF">BN815_00392</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31516">
        <property type="protein sequence ID" value="CDD31516"/>
        <property type="gene ID" value="BN815_00392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019981">
        <property type="entry name" value="Ribosomal_S11_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_S11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_S11_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="PTHR11759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03632">
        <property type="entry name" value="uS11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14310" checksum="32FB5F9E38C316BC" modified="2013-07-24" version="1">MAAQKGNKGTVRRRRERKNIERGAAHIQSTFNNTIVTITDTQGNAVSWASSGELGFRGSRKSTPFAAQTAAETAARIAMEHGMKSVEVYVKGPGAGREAAIRALQAAGLDVSMIKDVTPIPHNGCRPPKRRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSZ6</accession>
    <name>R6YSZ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glycerol-3-phosphate ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00453</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000445">
        <property type="protein sequence ID" value="CDD31726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31726">
        <property type="protein sequence ID" value="CDD31726"/>
        <property type="gene ID" value="BN815_00453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040582">
        <property type="entry name" value="OB_MalK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17912">
        <property type="entry name" value="OB_MalK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="371" mass="41254" checksum="DBDA6BE8E8A7C080" modified="2013-07-24" version="1">MSKIEIRDLTKSYDGKTNILEKISLDVEEGEFYVLVGPSGCGKSTLLRIIAGLEKITDGTLKIDGKVANNMPPKDRNLSMVFQNYALYPHMTVKDNILFGLDVKKVPKSEQKRRLDEAAEMLGLTQYLKRKPRELSGGQRQRVALARSVCSQSPICLMDEPLSNLDAKLRGQMRNEIRRLQKKLGLTVIYVTHDQVEAMTMGDHILVLHGGKIQQMGTPLELYNQPANTFVAGFIGSPQMNLAKAQLTEKGLVLNNDLVVPLTQEERAHLPQGSQWQIGVRAEQIEPASPGEEGTCLVYTQSTEMMGNETQVLFNVGETLFTARWTGQYIIDAGQHLNVTLSADDFHFFDGEKGTLIRPALHIKGFTAQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB79</accession>
    <name>R6ZB79_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-deoxynucleotidase</fullName>
            <ecNumber evidence="5">3.1.3.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00705</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 2'-deoxyribonucleoside 5'-phosphate + H2O = a 2'-deoxyribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36167"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18274"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:65317"/>
            <dbReference type="EC" id="3.1.3.89"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.89" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27727">
        <property type="protein sequence ID" value="CDD27727"/>
        <property type="gene ID" value="BN815_00705"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002953">
        <property type="term" value="F:5'-deoxynucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039356">
        <property type="entry name" value="YfbR/HDDC2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11845">
        <property type="entry name" value="PTHR11845"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="6">
        <location>
            <begin position="28"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="224" mass="25529" checksum="389E23816C3F7CFA" modified="2013-07-24" version="1">MYPFFAMLSRMKYINRWGLMRNTRSENICEHSLEVALVAHALATIGNKKFGKSYDPQRAALLAVLHDAPEIITGDMPTPVKYHSEEIRKAYGEVEDMAVEHLVSMLPPELRDEYREIMTMGGQADQALKPLVKAADKISAVIKCVEERRSGNRDFSKAEQTITKAIQEMGLPEADYFMQEFLPSYGLTIEEQDYTREAGLKFSESSQMVFSKVLPEKSRRRKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBF7</accession>
    <name>R6ZBF7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosome hibernation promoting factor</fullName>
            <shortName evidence="2">HPF</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">hpf</name>
        <name evidence="4" type="ORF">BN815_00719</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with 100S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HPF/YfiA ribosome-associated protein family. Long HPF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000063">
        <property type="protein sequence ID" value="CDD27812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27812">
        <property type="protein sequence ID" value="CDD27812"/>
        <property type="gene ID" value="BN815_00719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.505.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00839">
        <property type="entry name" value="HPF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034694">
        <property type="entry name" value="HPF_long/plastid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032528">
        <property type="entry name" value="Ribosom_S30AE_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038416">
        <property type="entry name" value="Ribosom_S30AE_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16321">
        <property type="entry name" value="Ribosom_S30AE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00741">
        <property type="entry name" value="yfiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0810">Translation regulation</keyword>
    <feature type="domain" description="Ribosom_S30AE_C" evidence="3">
        <location>
            <begin position="123"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="21371" checksum="744E2510C5BC6DEF" modified="2013-07-24" version="1">MGRADGCLVMKITIVGRKVNLRNNFKELAERKLSKFNRIFDEDAEATVTVTVERNRQTVEITIKQRGMIYRAEETSLEMNEALDHVIAALGRQIRRNKTRLEKAKKVDPNIDFPDALYDEPDEEIHVVRTKSFYVKVMTPEEAILQMNMLGHQFFMFRDDSTGEINVVYRRKDGDYGLLVPESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHG5</accession>
    <name>R6ZHG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphotransferase enzyme family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01294</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29907">
        <property type="protein sequence ID" value="CDD29907"/>
        <property type="gene ID" value="BN815_01294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="31803" checksum="476E8761D7A7B2A5" modified="2013-07-24" version="1">MGAHGEKIIDYSLFDARRAGFKKALFIIKEELLPDFQEAVFQKVSQYMEVEWVFQRLEDVPQGVEIPEGRQKPWGTGQATLAAARVLEDTPYAVINADDFYGREAFEKIYQFLKNAQDGAKLDFAMVGYYVKNTVTENGYVSRGVCQVEGGMLQSVTERTHIEKRPEGIAYTEDGGSTWNALAPDTVVSMNLWGFTPGFTPALEENFRRFFQEDVPQNPLKAEYFLPFVVNDLLAQDKAQVTVLSSADKWYGVTYKEDKETVVNAVREMTEAGVYPAPLWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIC5</accession>
    <name>R6ZIC5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">DNA polymerase III PolC-type</fullName>
            <shortName evidence="11">PolIII</shortName>
            <ecNumber evidence="11">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">polC</name>
        <name evidence="15" type="ORF">BN815_01445</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the DNA polymerase type-C family. PolC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="11"/>
    <dbReference type="EMBL" id="CBGU010000207">
        <property type="protein sequence ID" value="CDD30202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30202">
        <property type="protein sequence ID" value="CDD30202"/>
        <property type="gene ID" value="BN815_01445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00356">
        <property type="entry name" value="DNApol_PolC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006054">
        <property type="entry name" value="DnaQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006308">
        <property type="entry name" value="PolC_gram_pos"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044923">
        <property type="entry name" value="PolC_middle_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00573">
        <property type="entry name" value="dnaq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01405">
        <property type="entry name" value="polC_Gram_pos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="9 11" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8 11" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="7 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 11" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="14">
        <location>
            <begin position="339"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="Exonuclease" evidence="13">
        <location>
            <begin position="428"/>
            <end position="594"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="12">
        <location>
            <begin position="172"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1448" mass="161265" checksum="162E8A2848FDE1FC" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIE4</accession>
    <name>R6ZIE4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 14">Phosphoenolpyruvate-protein phosphotransferase</fullName>
            <ecNumber evidence="6 14">2.7.3.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Phosphotransferase system, enzyme I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="22" type="ORF">BN815_01465</name>
    </gene>
    <organism evidence="22 23">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="22 23" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="23">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 14">General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 14 17">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 14">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="22">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="6 14"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30222">
        <property type="protein sequence ID" value="CDD30222"/>
        <property type="gene ID" value="BN815_01465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024692">
        <property type="entry name" value="PTS_EI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000732">
        <property type="entry name" value="PTS_enzyme_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="18" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="14 17" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12 14 17" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11 14" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="22" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="23" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 14" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="14 22" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 14" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PEP-utilisers_N" evidence="21">
        <location>
            <begin position="9"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="19">
        <location>
            <begin position="154"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="20">
        <location>
            <begin position="258"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="region of interest" description="PEP binding" evidence="16">
        <location>
            <begin position="456"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="18">
        <location>
            <begin position="398"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="15">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="15">
        <location>
            <position position="504"/>
        </location>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="433"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="457"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="467"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00016544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00033235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRNR" id="PIRNR000732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="Pfam" id="PF05524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="EMBL" id="CDD30222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="573" mass="62597" checksum="D7605597C64C35D1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ02</accession>
    <name>R6ZJ02_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000243">
        <property type="protein sequence ID" value="CDD30437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30437">
        <property type="protein sequence ID" value="CDD30437"/>
        <property type="gene ID" value="BN815_01658"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="57"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15793" checksum="09DD5FA348C02E81" modified="2013-07-24" version="1">MVSRDRVNASLSRISPPIISGLRKMHHRLIMVICSSWVNLVQVLSSEKPCKCSRRRPRGSMSQSGQQPGDTWRSHTSQRQNISSSSSHWSQKSSVMRHMLAFCRRCQALSMTAGPGDRDSTMGLPHLSMALRIISISFSPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ12</accession>
    <name>R6ZJ12_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTP cyclohydrolase 1</fullName>
            <ecNumber evidence="5">3.5.4.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP cyclohydrolase I</fullName>
            <shortName evidence="5">GTP-CH-I</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">folE</name>
        <name evidence="7" type="ORF">BN815_00137</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homopolymer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP cyclohydrolase I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000246">
        <property type="protein sequence ID" value="CDD30447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30447">
        <property type="protein sequence ID" value="CDD30447"/>
        <property type="gene ID" value="BN815_00137"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035998">
        <property type="term" value="P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.286.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00223">
        <property type="entry name" value="FolE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043134">
        <property type="entry name" value="GTP-CH-I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001474">
        <property type="entry name" value="GTP_CycHdrlase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018234">
        <property type="entry name" value="GTP_CycHdrlase_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020602">
        <property type="entry name" value="GTP_CycHdrlase_I_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11109">
        <property type="entry name" value="PTHR11109"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01227">
        <property type="entry name" value="GTP_cyclohydroI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00063">
        <property type="entry name" value="folE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00859">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00860">
        <property type="entry name" value="GTP_CYCLOHYDROL_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 5" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="GTP_cyclohydroI" evidence="6">
        <location>
            <begin position="7"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="76"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="20850" checksum="DF4B1FE8E5C5FB04" modified="2013-07-24" version="1">MDTQRLERAVREILEAVGEDPSREGLLETPARVARMYQEIFSGLEADPKDFLKIFDEGPGHDELVLVKDIPLYSVCEHHLLPFIGRAHIAYIPKNGRIIGLSKFARIVDCFARRPQVQERLTGQIADFLFEQLEPLGVAVFIQAEHLCMTMRGARAAGAMTQTSALRGCMRSDAKTRAEVMALLGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ48</accession>
    <name>R6ZJ48_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000260">
        <property type="protein sequence ID" value="CDD30487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30487">
        <property type="protein sequence ID" value="CDD30487"/>
        <property type="gene ID" value="BN815_01703"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="23617" checksum="BBDED0C965BCFA6F" modified="2013-07-24" version="1">MRYDSILFDLDGTLWDSTDAVAASWEEALAGVPDIEGPPTRAQLEGVMGMTAEDLMAKLYPHLSKERHMELFDRCCQVENTYLREHGGVLYPQLEETLEALSQKLPLFIVSNCNAEYIPCFLDAHQLHRYFQDWECIGRTGKQKWENIRLVVERNHLQRPVYVGDTAMDQEAAQKAGVPFLHAAYGFGDVTGAPEISQFPQLLELLQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJA3</accession>
    <name>R6ZJA3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01735</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30522">
        <property type="protein sequence ID" value="CDD30522"/>
        <property type="gene ID" value="BN815_01735"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8567" checksum="AFF27A30F733F4B0" modified="2013-07-24" version="1">MFNRWVELALFHDTALFSQAVSKLEAAGIPYKVKDQSIGPKDRRTGSLGGSSRFNNLFQIYVKKEDLDRARHALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJD2</accession>
    <name>R6ZJD2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01770</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30557">
        <property type="protein sequence ID" value="CDD30557"/>
        <property type="gene ID" value="BN815_01770"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="171"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="286"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="42"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="370"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="404"/>
            <end position="411"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="616" mass="67371" checksum="AD5AC944F0F8B7FA" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJN4</accession>
    <name>R6ZJN4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000296">
        <property type="protein sequence ID" value="CDD30662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30662">
        <property type="protein sequence ID" value="CDD30662"/>
        <property type="gene ID" value="BN815_01869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="206"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="260" mass="26899" checksum="3C6D52ADE08B515F" modified="2013-07-24" version="1">MHRRPGHHRHRPVRLGGPHPPPALRRRPGKRRGHPAAGGAHRGAPVPKREPKAGGGPAFLRPGDAHQPRLPGHHRAGGQGPLRGGGVRRGHHPPPGGGGGLPLPGNLHHLPGPRPVLRLPGRRPEKAGHPLLCVPARQGGRRARHPVCAGGLPGGAGGLSDRGFAGAAENRRLRLYRRGDCQPGELRLFVEALRPGMAPGIHPPPPGLWPGAHPGGPGGACPPQRPAPAAHGPLRALRRPHPGGHRRGDFPGGVPAAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKE1</accession>
    <name>R6ZKE1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30927">
        <property type="protein sequence ID" value="CDD30927"/>
        <property type="gene ID" value="BN815_02089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="468" mass="52442" checksum="B26A78415DE87428" modified="2013-07-24" version="1">MKLNVKPVYVHLVHRSAYMGPCRGGTWEQLERSYDEMMAAENFAKMKEGLEKVYGGEKDICLQEPVYLEFLDEFVVRESHFEKVKDEDTDVFLLDGMMGQHLAVNIAKRYRKPMVTVGCCTSTDTTACLRAAGFEGYGSIDLEGTKPILKTLLAKKAIANTRVLSILKGDICSKGVESNIRDFDRLTNQWGIGFKFLNAEDFLQEISGLDAQELERAGALADELMAQAEDCSISREMLVNSTKVYVATKKLLERYECNAFTLPCFEICATGRINKEKYTWCLTHSLLKEEGIPSACESDYNALLSMIVVMAVAGNAPHMANTHPALSYEIPQDVPNTGNLIKLYHAVPTRYMKGRDGQPAPFGLHCFTEDRWGATMRYHYNQDIGQTVTMVRFNPQGTGLLAARGTITCETGYNKIGCDTGLLVDVENKRKFFKAQCNYGHHMTWAYGDIAEQLEDLGETMGFSVERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKG9</accession>
    <name>R6ZKG9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000350">
        <property type="protein sequence ID" value="CDD30952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30952">
        <property type="protein sequence ID" value="CDD30952"/>
        <property type="gene ID" value="BN815_02111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033396">
        <property type="entry name" value="DUF5107"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17128">
        <property type="entry name" value="DUF5107"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1088" mass="121712" checksum="153D6032896B11C9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKR7</accession>
    <name>R6ZKR7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isopropylmalate/homocitrate/citramalate synthases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02181</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31027">
        <property type="protein sequence ID" value="CDD31027"/>
        <property type="gene ID" value="BN815_02181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="527" mass="59473" checksum="AEDC259C196B80A5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKW0</accession>
    <name>R6ZKW0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02230</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31077">
        <property type="protein sequence ID" value="CDD31077"/>
        <property type="gene ID" value="BN815_02230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="124"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="225" mass="25625" checksum="119C310622896CE4" modified="2013-07-24" version="1">MRILIAEDQRDLNQLLKKRLKEAGYSVDACFDGAAVFDYLLGAEYDALVLDIMMPKVDGIQVVRRLRREGNQVPVLLLTARDSIEDRVAGLDAGADDYLIKPFAFEELLARLRVLLRKPQGGKTTVLRVGELELHLDTRQVFRQGQEVRLSSKEFSLLRYMMQNAGIVLSREKLEQHVWDYGYSGGSNVIDVYIRYLRKKIDQGHPVKYIHTVRGAGYVLKEGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL46</accession>
    <name>R6ZL46_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31172">
        <property type="protein sequence ID" value="CDD31172"/>
        <property type="gene ID" value="BN815_02316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="134" mass="15694" checksum="69CDF83CC7DDAA58" modified="2013-07-24" version="1">MIVCLCLDDREGLFFNHRRQSRDRAVLQDMGETVGPGRLWVHPYSLPLFAGWKGDLRADENFLNLAGPGEYCFAEGQLLAPYREKLESLVLYHWNRRYPADVYFDLDLSQWRLVSRREFPGTSHDTITKEVYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL61</accession>
    <name>R6ZL61_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UvrB/UvrC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02331</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31187">
        <property type="protein sequence ID" value="CDD31187"/>
        <property type="gene ID" value="BN815_02331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025542">
        <property type="entry name" value="YacH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38430">
        <property type="entry name" value="PTHR38430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015034">
        <property type="entry name" value="YacH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UVR" evidence="1">
        <location>
            <begin position="135"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="18881" checksum="43CC930D4158CCBF" modified="2013-07-24" version="1">MMCQSCGKKTATTHIKTIVNGKLAEYHLCADCAKQKGYSNIFSNWGMDFGNLLGGFMGSEVPSSHVARCPTCGASFEEITQSGKIGCADCYRTFRSQLMPVIQRIHGTTRHKGKVPGGSALRITGGQHQMVTVQESPLEEKKRLLKQAIEKQDFEQAAVLRDEIKEMESHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLH0</accession>
    <name>R6ZLH0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31297">
        <property type="protein sequence ID" value="CDD31297"/>
        <property type="gene ID" value="BN815_00235"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="186" mass="21151" checksum="1E4686D1DE514AD4" modified="2013-07-24" version="1">MDLRVTKTQRAIRAAFLELREKKPLEKITVKELCQRAEIHKSTFYDHYADVYALSDALETQVVESVLQGLTHPEYLFEQPELFTRELFAAYRSQGALIHLLFSGSRSGNLVAKIELAVKELAFARYPACREDPVVNIALSYAIYGGYYAYEENLRYGGEQVAEVVAQASRDIHRMLQGKFQQKPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMS5</accession>
    <name>R6ZMS5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00461</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31757">
        <property type="protein sequence ID" value="CDD31757"/>
        <property type="gene ID" value="BN815_00461"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="39"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="12489" checksum="C28BDA465E70288D" modified="2013-07-24" version="1">MRIDFNQIQEMTMPCLHGGPGEMSARFFGGEGGKLISCRIHPGGGIGLHSHPTSDDVNFVLLGTGLAVCDGQEESLEPGVCHICKKGSEHSIQNTGEGDLVLLTVVVEREDGREKDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XX74</accession>
    <name>R6XX74_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Collagen triple helix repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00835</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28353">
        <property type="protein sequence ID" value="CDD28353"/>
        <property type="gene ID" value="BN815_00835"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0176">Collagen</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="11903" checksum="41216AAFD794C6F5" modified="2013-07-24" version="1">MDLFPAVTDPTGAITQPGSQTIALQPGDYLVSYKVSATLSQPGYMQVTPSYGGAPHLEYGVYFATTATGSSAVGSAHFILPAPSATTFSLTYSGSVPAQNGEINLTFLRLRRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYD7</accession>
    <name>R6XYD7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cold-shock DNA-binding protein family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00955</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28783">
        <property type="protein sequence ID" value="CDD28783"/>
        <property type="gene ID" value="BN815_00955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04458">
        <property type="entry name" value="CSP_CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012156">
        <property type="entry name" value="Cold_shock_CspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019844">
        <property type="entry name" value="CSD_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002599">
        <property type="entry name" value="Cold_shock_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00050">
        <property type="entry name" value="COLDSHOCK"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00352">
        <property type="entry name" value="CSD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51857">
        <property type="entry name" value="CSD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="3">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="69" mass="7623" checksum="907272F0A7CC3CDD" modified="2013-07-24" version="1">MNGTVKWFNAEKGYGFISNDEGGDDVFVHFSAIVADGFKTLEEGQKVTFETEPDPKNSAKLRAVNVQKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYF6</accession>
    <name>R6XYF6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase III delta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28803">
        <property type="protein sequence ID" value="CDD28803"/>
        <property type="gene ID" value="BN815_00960"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8344" checksum="9A40764A61925D5C" modified="2013-07-24" version="1">MLARLSAIFRDGLVLRAGGSSLLGGAPQLADKLGDLPMKRLIQLPAVVEEARQGLERNANMALLVTDFCARLREAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYI4</accession>
    <name>R6XYI4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lipid II isoglutaminyl synthase (glutamine-hydrolyzing) subunit MurT</fullName>
            <ecNumber evidence="1">6.3.5.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">murT</name>
        <name evidence="4" type="ORF">BN815_00970</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The MurT subunit catalyzes the ATP-dependent amidation of D-glutamate residue of lipid II, converting it to an isoglutamine residue.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate + H2O + L-glutamine = ADP + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-D-isoglutaminyl-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57928"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:62233"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.13"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = ADP + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-O-P-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate</text>
            <dbReference type="Rhea" id="RHEA:59488"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:143132"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-O-P-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate + NH4(+) = beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-D-isoglutaminyl-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:62233"/>
            <dbReference type="ChEBI" id="CHEBI:143132"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a heterodimer with GatD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MurCDEF family. MurT subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.13" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28828">
        <property type="protein sequence ID" value="CDD28828"/>
        <property type="gene ID" value="BN815_00970"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140282">
        <property type="term" value="F:carbon-nitrogen ligase activity on lipid II"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02214">
        <property type="entry name" value="Lipid_II_synth_MurT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043703">
        <property type="entry name" value="Lipid_II_synth_MurT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013564">
        <property type="entry name" value="MurT_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08353">
        <property type="entry name" value="MurT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0133">Cell shape</keyword>
    <keyword evidence="1" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="2">
        <location>
            <begin position="88"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="MurT_C" evidence="3">
        <location>
            <begin position="360"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="504" mass="56009" checksum="CDC6E87E852F8023" modified="2013-07-24" version="1">MQWIHNFHNSLNGMWVQAICRENLGKGKKTRFMKRSPRFYFALLFAKATAKVMKLIGRKGTSMPGSWAIILCPDFLGRMPRPKYIIGITGTNGKTTVSNMVEDVLTQCGYEFTCNRSGSNVATGVASSLIANSTLFGKPKKDLAVFELDERSAPRILPFIKPDLLLCTNIFRDSYKRNAHVEFILDILNTYIPDSTKLVLNADDLLCSSLKPSNRRVFFSIDPLPNDVEEAPTLVQDVRACPHCGATLEWDLRRYHHIGRAHCPQCGFTSPEARYHVSAIDENARRMTVEGPDGPRQFALPNTSPINVYNALSAVALLAEFGLAKDRIAQCMDQLTIVESRFSKVELKGRGLVLHLAKGQNPIACSQACANVQQAPGKKTVLLLLDDAHDAAHSVENTAWLYDTDFEFLNQPDILQVAVAGPRHWDVAVRLLMAGLPQEKLIHWEDPHQAAAALEVEAPDTVFVLYDLYSVDLAKEVKGKLLQRMALLPPKEPQPGKEAAGHEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZ57</accession>
    <name>R6XZ57_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UDP-N-acetylglucosamine 2-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01022</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UDP-N-acetylglucosamine 2-epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29003">
        <property type="protein sequence ID" value="CDD29003"/>
        <property type="gene ID" value="BN815_01022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008761">
        <property type="term" value="F:UDP-N-acetylglucosamine 2-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003331">
        <property type="entry name" value="UDP_GlcNAc_Epimerase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029767">
        <property type="entry name" value="WecB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43174">
        <property type="entry name" value="PTHR43174"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02350">
        <property type="entry name" value="Epimerase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00236">
        <property type="entry name" value="wecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase_2" evidence="2">
        <location>
            <begin position="24"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="371" mass="41109" checksum="AE313DF2DDD7C9D5" modified="2013-07-24" version="1">MEKIKVMSVFGTRPETIKMAPLVKELERREEFESLVCVTAQHRQMLDQVLEAFSITPDYDLDIMQPGQTLSDITARVLKGLEGIIQEVKPDMVLVHGDTTTTFAGALAAYYGQTAVGHVEAGLRTYDKYSPFPEEMNRQFVGCVADLHFAPTEGARQNLLREGKAPESIVVTGNTAIDALQTTVREDYSDEILQWAEGSRLIVLTAHRRENLGEPMHRMFRAIRRVVEEFPDVKVVYPVHLNPLVQKAAEEELGGCDRVKLIAPLEVIEFHNLLARSALILTDSGGIQEEAPSLGKPVIVLRDTTERPEGIAAGTLKLAGTGEETIYSLVRELLTDTAEYERMSHASNPYGDGLASQRIADAILAWKRGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZE2</accession>
    <name>R6XZE2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00083</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29113">
        <property type="protein sequence ID" value="CDD29113"/>
        <property type="gene ID" value="BN815_00083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032095">
        <property type="entry name" value="Sacchrp_dh-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16653">
        <property type="entry name" value="Sacchrp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacchrp_dh_NADP" evidence="1">
        <location>
            <begin position="4"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Sacchrp_dh_C" evidence="2">
        <location>
            <begin position="160"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="419" mass="46952" checksum="A990FE9189B6022A" modified="2013-07-24" version="1">MSKVLIIGCGGVANVAIRKCCQCDDLFTDICIASRTKSKCDALKADLEGKTKTRITTAQVNADDASQVAALIREYQPDLVMNIALPYQDLAIMDACLECGVNYLDTANYEPEDLSDPAWRANYEKRCKEEGFSAYFDYSYQWAYKEKFEKAGLTALLGTGFDPGVTQAYCAYAQKHLFDQIDTIDILDCNGGDHGYPFATNFNPEVNLREVSAPGSYWEDGHWVEIPAMSIKREYDFDQVGQKDMYLLHHEEIESLAKNIPGVKRIRFFMTFGQSYLTHMKCLENVGMLSTEPVEFEGHKIVPIQFLKALLPDPATLGPRTVGKTNIGCIFTGTKDGQEKKAYIYNVCDHQECYKEVGSQAISYTTGVPAMVGAMMLLTGKWNKPGVYTVEEFDPDPYMDALNQWGLPWQIDENPALVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZM3</accession>
    <name>R6XZM3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01092</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29218">
        <property type="protein sequence ID" value="CDD29218"/>
        <property type="gene ID" value="BN815_01092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="27934" checksum="CFD580C17744CBF8" modified="2013-07-24" version="1">MKKTAIVTGARRGIGLAIAKKLLEGGYRVVLCATTAAGEVTALLEELTRLGEAHYLQCDISRPEDRDNLLDQVLERFGRLDVLVNNAGVACKQRLSILETTPESFEGLMKVNCEGTFFLCQGGANRMIACQRQNLEDYHPRIVNISSISAYTSSTNRGEYCISKAGISMITQLFADELASYGIPVFEVRPGIIATDMTAPVHEKYEKLIAQGVTPIRRFGQPEDVADCVWAACSGLLDFGTGTVLNADGGFHLRRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZQ6</accession>
    <name>R6XZQ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00501</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000012">
        <property type="protein sequence ID" value="CDD27085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27085">
        <property type="protein sequence ID" value="CDD27085"/>
        <property type="gene ID" value="BN815_00501"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="1"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="2"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="21034" checksum="B3735E22873EB23A" modified="2013-07-24" version="1">MGESGIGKSTVLRLLLRFWNPKSGHIRVNGIPLERVPLEELRRRVAVLEQDTFLFNGTLGENIALGKPDASREEIAEAARRAGLEEFIKNLPQGYDTPMGQMGARLSGGERQRVGIARVMLLDPDVIVMDEPTSSLDVLHEKELLRTLQEACGDKLLLLVSHRPSTLTGCDRIVRLENGRAVEEKGGMNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0A4</accession>
    <name>R6Y0A4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0237 protein BN815_00577</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00577</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0237 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27305">
        <property type="protein sequence ID" value="CDD27305"/>
        <property type="gene ID" value="BN815_00577"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd04872">
        <property type="entry name" value="ACT_1ZPV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01054">
        <property type="entry name" value="UPF0237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022986">
        <property type="entry name" value="UPF0237_ACT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="2">
        <location>
            <begin position="8"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10286" checksum="42EC97022D10C2D4" modified="2013-07-24" version="1">MEKQEKAVITVVGKDMVGILAKVSGICAEKGVNVLEVTQSILQDMFVMVMMVDITHATAEVGDLADEFAKLGEENNLKIHVMHEDIFNSMHRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0U5</accession>
    <name>R6Y0U5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional aminoglycoside modifying enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00634</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000044">
        <property type="protein sequence ID" value="CDD27460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27460">
        <property type="protein sequence ID" value="CDD27460"/>
        <property type="gene ID" value="BN815_00634"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="141"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="24559" checksum="D603B880068F0AE0" modified="2013-07-24" version="1">MYSLYEVEQILRNKQVFVCSLAFLGEGEHSEAFLVNRDIVVKLPKHRQASECLKTEMQVVKGLGKNLNVEIPSVLFQGAFFHEGEEYTFFGSRKLPGHSLNKKQFCALPKPILDKNAEIVANFLYRLHSEKNVLPIQREGDVLVHGDFSLNHLLFDQNQMVCSVLDFGDSHVGDYQEDFLYLLDEEDEEEFGADFGREVLANYKSILSCSLQGEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1E4</accession>
    <name>R6Y1E4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00681</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27635">
        <property type="protein sequence ID" value="CDD27635"/>
        <property type="gene ID" value="BN815_00681"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039532">
        <property type="entry name" value="TetR_C_Firmicutes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14278">
        <property type="entry name" value="TetR_C_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="192"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="24741" checksum="4C724349E20481C0" modified="2013-07-24" version="1">MPETAQASRGKQAKARIRQAFTKLLREKPIQRIAVKELCQEAGVNRSTFYAHYQDIYDLLTKIEEDMLEDFQRALAPLLEPGPEAISPLEITRGIYRCLQENADVCTVTLGEFGDKDFALRLLNIGRESCLLAYSRQFPQASPQRLEYFYAFASGGNMELLRRWVQEGMATPAEDMARAAEAIMFHGMEFLKGEPLPPGEEEHAMSPAPAGGEERKDVPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1H8</accession>
    <name>R6Y1H8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01309</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29923">
        <property type="protein sequence ID" value="CDD29923"/>
        <property type="gene ID" value="BN815_01309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06259">
        <property type="entry name" value="YdcF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003848">
        <property type="entry name" value="DUF218"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02698">
        <property type="entry name" value="DUF218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="DUF218" evidence="2">
        <location>
            <begin position="102"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="27967" checksum="F1B636E12DBBEE53" modified="2013-07-24" version="1">MKGFRKVLRAVGCVLCVGGMAYFLLPLLRGGFGLGAVFGLCVCLLGLLLLVFFGKLSRRGGWRKLLARVAAVCYCLGLCWAGYLTALMLSATANTPPAGTPVVVLGARVYSAERMSVSLSNRVDKAYEYLAENLDALCIVTGGQGKDEPCPEAVTEKNALVGMGIREERIFVEDQSHNTRENLQFAQEIAQEQGMGEEIAVVTQGFHMYRATQLAKAAGFTPYSLVAETEPLLFPEYYGRELLSLTKWQVEHLLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y234</accession>
    <name>R6Y234_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Chlorophyll synthesis pathway bchC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01381</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30123">
        <property type="protein sequence ID" value="CDD30123"/>
        <property type="gene ID" value="BN815_01381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADH_zinc_N" evidence="1">
        <location>
            <begin position="30"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="197" mass="20526" checksum="D3D89B811F321B29" modified="2013-07-24" version="1">MAEPLACCLHGIDLAGIQVGDKVCVVGGGAIGLLMVQLAKLSGASQIVLSEPNEKRRQVGLQLGANAAIDPTRPDAQEAFAQVLGGGANVVIECVGNVPAVKSAFQFAGKGATVLLFSVPKVDATFDLPLFDVYKKELTIKGSFVNPDTLARAVALINSGKVDFGPIITHRFTLDQLPEAIAMQMSDASIKVVVEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y332</accession>
    <name>R6Y332_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mannitol dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01649</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-mannitol 1-phosphate + NAD(+) = beta-D-fructose 6-phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19661"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:61381"/>
            <dbReference type="EC" id="1.1.1.17"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30428">
        <property type="protein sequence ID" value="CDD30428"/>
        <property type="gene ID" value="BN815_01649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013118">
        <property type="entry name" value="Mannitol_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013131">
        <property type="entry name" value="Mannitol_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01232">
        <property type="entry name" value="Mannitol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08125">
        <property type="entry name" value="Mannitol_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mannitol_dh" evidence="2">
        <location>
            <begin position="34"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="domain" description="Mannitol_dh_C" evidence="3">
        <location>
            <begin position="222"/>
            <end position="486"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="518" mass="56796" checksum="EBD2DB76DE2DD13B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Z5</accession>
    <name>R6Y3Z5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01903</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30698">
        <property type="protein sequence ID" value="CDD30698"/>
        <property type="gene ID" value="BN815_01903"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="42644" checksum="AADE6A87BD4DEF23" modified="2013-07-24" version="1">MKCQLKYRWVKLPRACLPQGKGVLGQWARLAARAAYRKGVGLYCGFENPVEPGIWAGGVVGLKSILGTKSRKAALETLEQLRELGYLSYSLDSTTKKLEYTLLDWVCTCTGEASVGESVYALNGSGFLCLPRSIPDRLANQHYYFEEADALLDLWCHTVWQEPKNIFSHLAPTVQFGSLGAVLTLETLGRRWGWEKTKVWRFFKKHEDAFPLYRLPGAYGCLVFNAQYPTESSTQGMGISLPSQEELLRTIEALRFCAGNARIAGSDNLRLNKMVLWYSKKMLGQQAENSRVALSAPLLRAYISPCWNCKNCKVDCQEKRIHQEPVFSFCEIPALFDLERKVSHEKQEKLPELYDPIPGFACLADRPGPFRRRFHSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y466</accession>
    <name>R6Y466_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 14">ATP phosphoribosyltransferase</fullName>
            <shortName evidence="14">ATP-PRT</shortName>
            <shortName evidence="14">ATP-PRTase</shortName>
            <ecNumber evidence="5 14">2.4.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="primary">hisG</name>
        <name evidence="17" type="ORF">BN815_00909</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + ATP</text>
            <dbReference type="Rhea" id="RHEA:18473"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="2.4.2.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 14">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Heteromultimer composed of HisG and HisZ subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="14">Lacks the C-terminal regulatory region which is replaced by HisZ.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the ATP phosphoribosyltransferase family. Short subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.17" evidence="5 14"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28650">
        <property type="protein sequence ID" value="CDD28650"/>
        <property type="gene ID" value="BN815_00909"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003879">
        <property type="term" value="F:ATP phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13595">
        <property type="entry name" value="PBP2_HisGs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01018">
        <property type="entry name" value="HisG_Short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013820">
        <property type="entry name" value="ATP_PRibTrfase_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018198">
        <property type="entry name" value="ATP_PRibTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001348">
        <property type="entry name" value="ATP_PRibTrfase_HisG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024893">
        <property type="entry name" value="ATP_PRibTrfase_HisG_short"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21403">
        <property type="entry name" value="PTHR21403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01634">
        <property type="entry name" value="HisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00070">
        <property type="entry name" value="hisG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01316">
        <property type="entry name" value="ATP_P_PHORIBOSYLTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 14" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="15" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="14 17" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="12 14" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="10 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 14 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HisG" evidence="16">
        <location>
            <begin position="53"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="15">
        <location>
            <begin position="187"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009489"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00024861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD28650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="23386" checksum="814FD7F730E5136D" modified="2013-07-24" version="1">MQPLRIALTKGRLEKSTVQLFEQAGMDCSQLREKGRKLILPVGDGSLQAVLAKAADVITYVEHGVCDMGVVGKDTIMENGSHFFEILDLGFGRCGFALAAPKGSNFYGGYRAKTIATKYPNVARRFFESKQMDVRIIKIEGSVELAPLLGLSDGIVDIVETGATLRENGLEVVEPIHQVSARLIVNAASLKLRKQEIEDLAARLEREIQKGEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y489</accession>
    <name>R6Y489_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30778">
        <property type="protein sequence ID" value="CDD30778"/>
        <property type="gene ID" value="BN815_01982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7623" checksum="9D06D318387FCFE6" modified="2013-07-24" version="1">MSAQKYTEARKNGNRKWDAANLDRLSLALPKGKKAEIQAHAQAHGESVNAFISRAIETTMRLDREETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4A4</accession>
    <name>R6Y4A4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Cell division ATP-binding protein FtsE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsE</name>
        <name evidence="9" type="ORF">BN815_00920</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Part of the ABC transporter FtsEX involved in cellular division.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Forms a membrane-associated complex with FtsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
            <orientation evidence="6">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28690">
        <property type="protein sequence ID" value="CDD28690"/>
        <property type="gene ID" value="BN815_00920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005286">
        <property type="entry name" value="Cell_div_FtsE_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02673">
        <property type="entry name" value="FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="2"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="226"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="317" mass="35587" checksum="14B263DC0212F798" modified="2013-07-24" version="1">MIEFRNVSKVYNNGTEALHNINLTVEKGEFVFIVGSSGAGKSTFLKLVMCEERPNSGQIIVDGVDVSRLPKRKIPYIRRKMGIVFQDFRLIDHMTVYDNVAFAMRVVGASARSIRKRVPYILSLVGLQHKAKHYPTELSGGERQRVGLARALVNNPSMIIADEPTGNIDPALSFEIVDLLSEINRRGTTVLMVTHEHSLVKHFHKRIIQIHSGEIVADTAEMQDTYAPPERYDSPEEAVANDDDYAEYDNQETYDSKEAYQPAPQPAYQEEDLAYEDTSLYGVEGEEAPEENAGVLAQQILLEQMPLEDDNSEEVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4P1</accession>
    <name>R6Y4P1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02070</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30908">
        <property type="protein sequence ID" value="CDD30908"/>
        <property type="gene ID" value="BN815_02070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="30"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="73"/>
            <end position="80"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="357" mass="40652" checksum="DA1D2EC3D465A35C" modified="2013-07-24" version="1">MENENKELNTIEAESQDSAQPVVDGKKVLLRLRDVKQYFPVKKTKLREKQRYVRANDGISLDIFEGETLGLVGESGCGKSTLGRTILQLYPQSHGDILYYKDGKAIDLKKLSYEEMRVLRKDLQLIFQDPYSSLNPRITVGQIIGEGLTSHGIFKRGDPAMKEYIMKVMEDCGLASYMFNRYPHQFSGGQRQRIGIARSLALSPKFVVCDEAVSALDVSIQSQILNLLSELREKAGLTYLFITHDLSVVKYISDRICVMYLGNMVELSESEELFKHTYHPYTEALLSAIPTTEEDNGGRERILLEGDIPSPVNPPSGCKFHTRCRYCQEKCKNEVPEWRDMGNHHYVACHFPLKQKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Q0</accession>
    <name>R6Y4Q0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000341">
        <property type="protein sequence ID" value="CDD30913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30913">
        <property type="protein sequence ID" value="CDD30913"/>
        <property type="gene ID" value="BN815_02075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="37227" checksum="1652C5D9D47C0E6C" modified="2013-07-24" version="1">MFLRIYRQAVLHVGVIIAALYLGVTEVFVIARVATQAQATPAVILFITPANTINERSDFSRVTSVEISCIGRNIIFTRSNILPVFALYAKGLAVVDVFVVLLHAPAESCGRVFTGGSDNKSRGSNLAVRHPGGDTAIGALDGRQSYIRSPLRNIRTGQVGGTASKASNVLSSTVSRAQLAGLVVVDDQALVVIQAFLVKLVQPDHGFLPTVLHVRQLDLIAIQIDIIVIGRGVDEGIGQPSAHRIGVPTALIGQQGDFVSLAVPIGILFLETAEHVLELIQRGGSFHVQGIQPLLVDPQLAGAFAVDALLDVGKGVNVAVTHRKGLGDTRNIFFYFLKYFTILFDIVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4W4</accession>
    <name>R6Y4W4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30968">
        <property type="protein sequence ID" value="CDD30968"/>
        <property type="gene ID" value="BN815_02127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="283" mass="30891" checksum="3D044225546F4274" modified="2013-07-24" version="1">MAELRKAALLAAHNFQKWPVNPRVYVVFLLELAYVHWMVSPVGDFCAQGGYTVGPWVFPFLLAEPYSRLMVMLGLILLLCDAPFIESDHPALLLRSGRRTWTAGQVLYIAGTSAVYFAVVYLLTVLVLLPHVGFEPGWGKVIHTFCQTRMAGQHGIVLLFDHQISNALGPVEANLLELLLCWLLGTLLGLVLFVLNLTVNRSAGAICAAALAIFPLFVERAGWWMHYISPVSWASLSVVDLTGTTAFPSLGYALAVLAGGNALLALLAFLAMGRRDIDVLKSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y556</accession>
    <name>R6Y556_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31053">
        <property type="protein sequence ID" value="CDD31053"/>
        <property type="gene ID" value="BN815_02207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="420"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="469"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="511"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="537" mass="60704" checksum="B8CA079FDCBD1399" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y579</accession>
    <name>R6Y579_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31088">
        <property type="protein sequence ID" value="CDD31088"/>
        <property type="gene ID" value="BN815_02241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="11060" checksum="1D2E7E3902289E94" modified="2013-07-24" version="1">MKVSYEGVAEQVATFQVDGASNPAVQVGTVVALSGNGTVKACPASTAPAGVVLGVKDGLAAVQVAGYMRLPCAAALTVGYAQLALDSSSKLAAGTGRGGLVVEVDGGTCGVIFC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y591</accession>
    <name>R6Y591_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29015">
        <property type="protein sequence ID" value="CDD29015"/>
        <property type="gene ID" value="BN815_01027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003797">
        <property type="entry name" value="DegV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043168">
        <property type="entry name" value="DegV_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02645">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00762">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51482">
        <property type="entry name" value="DEGV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="278" mass="30029" checksum="EC8127D54D88ADB3" modified="2013-07-24" version="1">MVKIVTDSSCDISPQRCAELGVEMLPITVNFGGESYRANLDISNEEFYEKLAAAEELPHTAQITPAQFQEIFKPYQESGDDVVCLFISSQMSGTLQSARVAANILGADNILLPDTLHVTFALGLLVEEAVKMRDAGLSGKEIVARIEELIPRVRLFAMIEDLKYLKMGGRLSATSALVASILGICPIITLKDGLVEVVGKARGKKAAFAAIRKFVEKEPISGDYCVTVGHANVPENCKAFEEYMGDLLKKREVHTQAIGSIVGTHTGPGAVGLAYIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5B9</accession>
    <name>R6Y5B9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0102 protein BN815_02282</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02282</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0102 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31138">
        <property type="protein sequence ID" value="CDD31138"/>
        <property type="gene ID" value="BN815_02282"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00048">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003509">
        <property type="entry name" value="UPF0102"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34039">
        <property type="entry name" value="PTHR34039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02021">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00252">
        <property type="entry name" value="TIGR00252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13307" checksum="CA0DFEDC1A62FE49" modified="2013-07-24" version="1">MKNQSGKAGEEHIARWLESQGYEILARNFHSRYGEIDIVAQRPPYIAFVEVKARVENSLVSPFEAITPRKQRKIIATAQEYLRQHPSGLQPRFDAAAVHLQEGAVVGQEYLENAFWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5F3</accession>
    <name>R6Y5F3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar-transfer-associated ATP-grasp</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31173">
        <property type="protein sequence ID" value="CDD31173"/>
        <property type="gene ID" value="BN815_02317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039523">
        <property type="entry name" value="RimK-rel_E_lig_ATP-grasp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14397">
        <property type="entry name" value="ATPgrasp_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPgrasp_ST" evidence="1">
        <location>
            <begin position="77"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="37996" checksum="F3DEBBE3A43A1EE2" modified="2013-07-24" version="1">MGKLSYILGCVTRMDYPELFRTVGKVHKITGKNSVGILADVVKCGLKYGAGFNDYLLCEFYNLTDAQRATYITRSVNNTLVSLLNDREYYHFFDNKSEFYTTFGKYIGRQWLDFGKATQKEFEDFMASRDTIMVKPDSSSGGFGVNKLSKGDFPSLAAMYQKLKEEHIGVIEDVLQQHEVLNQLNPSSINTLRVVTILNESGPHIVYAHIRIGNSDRPVDNLHSGGMFAPIDLDKGVIQYPAYDKARHTYTEHPRTHTTIQGFAIPYWEEAKAMCLEASQIVPQMRYVGWDVAITPNGPVFVEGNNLPGYDILQMPPHTPDKIGMLPRFREFVKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5G5</accession>
    <name>R6Y5G5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Inorganic anion transporter SulP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29110">
        <property type="protein sequence ID" value="CDD29110"/>
        <property type="gene ID" value="BN815_00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="320"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="350"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="374"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="425"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="452"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="480"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="505" mass="54388" checksum="F45C1EA2C9CD6506" modified="2013-07-24" version="1">MKFKYRWWGKGDVDASIGIFFDGFSKILSATGIMLFVFGMPADIVLGKIVPGVGLAIFAGNLWYFYEAWSLAKKEHRQDVTAQPFGIGASQLTGWLYLIMGPVYWQTGDAELAFQVGLAASLIGGFIEVLGGFIGRWIVKVVPHSALMGNMASSALVWLSFVGIAMVFDKPLYALLPFCMVVIDYLGKADKRFQKIPTGVVAVVLGAVIAWCGGYLTWDNFTASFSNLGFYPPTFCGGDIVQGMKGIFPFLPVIIPLQINNFLSTLQGIEAAKAVGDSYPERRSMVMDGCSTMLGSLFGNPFPTTVYFGHPGWKELGARAGFSLVNAVAYLLICLTGLTGVLMALIPTEAVMVLLVFVGFSVTAATFQELDKKYVNVVLLSLVPILFQYIQTQISSSVQAAGTTVEALTAAQFAEYSVPIQGIQYLGNGAFLSSLLLAGLLAYVVDKKYFHAAAFGGALAFCSFIGMIHAPSVALFPAEGIPFGIVYLAAAAWLVVKGLLFRQDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5N8</accession>
    <name>R6Y5N8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Methionyl-tRNA formyltransferase</fullName>
            <ecNumber evidence="4 8">2.1.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">fmt</name>
        <name evidence="12" type="ORF">BN815_02402</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N-formyl-L-methionyl-tRNA(fMet)</text>
            <dbReference type="Rhea" id="RHEA:24380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9953"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:78844"/>
            <dbReference type="EC" id="2.1.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the Fmt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.9" evidence="4 8"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31258">
        <property type="protein sequence ID" value="CDD31258"/>
        <property type="gene ID" value="BN815_02402"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004479">
        <property type="term" value="F:methionyl-tRNA formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08646">
        <property type="entry name" value="FMT_core_Met-tRNA-FMT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08704">
        <property type="entry name" value="Met_tRNA_FMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00182">
        <property type="entry name" value="Formyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005794">
        <property type="entry name" value="Fmt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005793">
        <property type="entry name" value="Formyl_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001555">
        <property type="entry name" value="GART_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044135">
        <property type="entry name" value="Met-tRNA-FMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041711">
        <property type="entry name" value="Met-tRNA-FMT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02911">
        <property type="entry name" value="Formyl_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00460">
        <property type="entry name" value="fmt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00373">
        <property type="entry name" value="GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="10">
        <location>
            <begin position="1"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="Formyl_trans_C" evidence="11">
        <location>
            <begin position="204"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Tetrahydrofolate (THF) binding" evidence="8">
        <location>
            <begin position="109"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="288"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="293"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00016014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="33895" checksum="8028E8B7E5F764BB" modified="2013-07-24" version="1">MRVIFMGTPDFAVPSLEQLLRHGHEVCAVYTQPDKPKGRGHKLQPPPVKELALQHNIPVFQPVNLRGEDTQREIQAWGADVIVVVAYGKLLPKAVLDAPRLGCVNVHGSLLPKYRGAAPIQWTVLNGDKTAGVTTMFMAEGMDTGDMLLKAETPVGEEETSGQLFDRLKDLGAQLLIETLEKLEQGALTPIPQEEAQATHAPMLSKELSLVDWTKPAQQVHDLIRGLNPWPSAVSYLDGKKLKLHASRVREGSGQPGKAFVQEGALLVCCGQGALELTELQTENGKRMDGKSYLLGHPLEKDSRFGGPENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Q4</accession>
    <name>R6Y5Q4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage minor structural protein N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31273">
        <property type="protein sequence ID" value="CDD31273"/>
        <property type="gene ID" value="BN815_00211"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010572">
        <property type="entry name" value="Prophage_Tail"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06605">
        <property type="entry name" value="Prophage_tail"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ig-like" evidence="1">
        <location>
            <begin position="415"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="485" mass="54510" checksum="2B27F3DCF5896A34" modified="2013-07-24" version="1">MSLFRVFVDDQLFYHPHLSQLSITEAKVQEDAENIDSLTLSAPFNHPYLSAVQPMASTIVCKKDALTVFEGRALDEGTDFYNTHTWTCESCLAYLKDTMQPPFSYQGPLRGLLEQFLSVHNAAVEEKKQFTLGTVTVTDNNDYISYSNSDYSVTMDAIQDKLIKTHGGYLQVRYTENGKVLDYLEDFPDRSLQTVEFGKNLTDVKITRDHTERVTALIPLGAKLTETDEDGNETETDTRLDITAVNDGKNYVYDEEAVEEIGWIWTTEIWEDVTLAGNLLRKANARLSELVKGVTSMELTIVDESDTGADIGDIRARMYVRCISKPHGIDGTYLCLSRTRDYLDPSGNTITIGAAGVRLTSESAKQDQNITSIEDDLLGKTSKIEVITGKVDQINAQKMYRTELVVDGVNIFRDKGQKSILRCRVYSWDKEITDTLPASSFVWHRNSGREDLDADWDSSHIGMKSITVTTEDVTDNASFYCEITI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6L5</accession>
    <name>R6Y6L5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000431">
        <property type="protein sequence ID" value="CDD31593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31593">
        <property type="protein sequence ID" value="CDD31593"/>
        <property type="gene ID" value="BN815_00415"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034422">
        <property type="entry name" value="HydE/PylB-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43726">
        <property type="entry name" value="PTHR43726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="8675" checksum="8AA7ADFC26413224" modified="2013-07-24" version="1">MLLPATTALGTLLPGGREQGILHGANVVMPNLSPEDAREKYTLYNNKLHSGAEAAESLNLLRQSLGKIGYEVAVSRGDSKAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6N7</accession>
    <name>R6Y6N7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Phosphate acyltransferase</fullName>
            <ecNumber evidence="3 4">2.3.1.274</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Acyl-ACP phosphotransacylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Acyl-[acyl-carrier-protein]--phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Phosphate-acyl-ACP acyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">plsX</name>
        <name evidence="5" type="ORF">BN815_00480</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>a fatty acyl-[ACP] + phosphate = an acyl phosphate + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:42292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
            <dbReference type="EC" id="2.3.1.274"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Probably interacts with PlsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Associated with the membrane possibly through PlsY.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PlsX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.274" evidence="3 4"/>
    <dbReference type="EMBL" id="CBGU010000003">
        <property type="protein sequence ID" value="CDD26984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26984">
        <property type="protein sequence ID" value="CDD26984"/>
        <property type="gene ID" value="BN815_00480"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043811">
        <property type="term" value="F:phosphate:acyl-[acyl carrier protein] acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00019">
        <property type="entry name" value="PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003664">
        <property type="entry name" value="FA_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012281">
        <property type="entry name" value="Phospholipid_synth_PlsX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30100">
        <property type="entry name" value="PTHR30100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02504">
        <property type="entry name" value="FA_synthesis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002465">
        <property type="entry name" value="Phsphlp_syn_PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00182">
        <property type="entry name" value="plsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="4" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD26984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="333" mass="35375" checksum="F28038C0C9B445C0" modified="2013-07-24" version="1">MKIIVDAFGGDNAPQQILLGCAQARESLGIDIVLAGDKARLEACAKELDLTQQLAKMEILPCGQLLTMEDEPTSVIREKSDSSMAVGLRALAQGQGDAFASAGNSGALVVGATTLVKRVRGVKRVSFAPIMPGMDGFFMLIDGGANVDCRPEMLLQFGVMGSAYMKNVMGIEKPRVALANVGTEEHKGDQLRQEALALLKACPDIHFVGNLEARDIPYNKADVVVADGFTGNMILKLYEGVAMALMDKIKGVFLGSLKGKLAAAMVYSDLKKMKKELDYNEYGGAPIMGCSKPVFKIHGSAKASTVESALRLARDYAQSGIIAQIGEAVGKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6V4</accession>
    <name>R6Y6V4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">50S ribosomal protein L13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4 6" type="primary">rplM</name>
        <name evidence="7" type="ORF">BN815_01203</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 6">This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the universal ribosomal protein uL13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29600">
        <property type="protein sequence ID" value="CDD29600"/>
        <property type="gene ID" value="BN815_01203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00392">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01366">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005822">
        <property type="entry name" value="Ribosomal_L13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005823">
        <property type="entry name" value="Ribosomal_L13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023563">
        <property type="entry name" value="Ribosomal_L13_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036899">
        <property type="entry name" value="Ribosomal_L13_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11545">
        <property type="entry name" value="PTHR11545"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00572">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002181">
        <property type="entry name" value="Ribosomal_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52161">
        <property type="entry name" value="SSF52161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01066">
        <property type="entry name" value="rplM_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00783">
        <property type="entry name" value="RIBOSOMAL_L13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="15701" checksum="35B839FDF21E08AF" modified="2013-07-24" version="1">MSTTMPKAGQIDRKWYVIDAAGKPLGRVAAQAAVLLRGKHKPTFAPHVDCGDHVIIINCKDAVLTGGKAEKKYYYRHTGYIGHLKATRYDTLMRTKPELAMELAVKGMIPSNSIGRTAMTRLRAYAGSEHKHAAQKPAEWNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y738</accession>
    <name>R6Y738_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00503</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27109">
        <property type="protein sequence ID" value="CDD27109"/>
        <property type="gene ID" value="BN815_00503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="8"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="29859" checksum="66D4256097516939" modified="2013-07-24" version="1">MEKKPLVSVIMPTFNCGQYIIQSIESVIAQTVTDWELLIVDDCSTDNTAEVLKPYLERYPTIHYYILPQNEGPAAARTEAIKRATGKYIAFLDSDDIWKPEKLEKQITFMQKTGAKFSATGYSWMDEVGNDLHTLFIPPKKTDYKKMIRLSNPIGNLTVMYDQEALGKFEVPLIKKRNDFALWLQILKKTKYCYGMEEVLGIYRMGRMGSVSSNKFKQAKYHWQLYHGIEGHNVIRSLYELGCWAWVKGTGMGIDKRKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8N8</accession>
    <name>R6Y8N8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01529</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30295">
        <property type="protein sequence ID" value="CDD30295"/>
        <property type="gene ID" value="BN815_01529"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="7262" checksum="37E1CF0B7EA36C0C" modified="2013-07-24" version="1">MYPYFWGGTPSSGLSGGAYELLAVRAESLDLPEEVRAAIEERKDEIHSEEDLRRMAYELMLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8P5</accession>
    <name>R6Y8P5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000052">
        <property type="protein sequence ID" value="CDD27654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27654">
        <property type="protein sequence ID" value="CDD27654"/>
        <property type="gene ID" value="BN815_00687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="507" mass="51856" checksum="8EFE19ED911E3809" modified="2013-07-24" version="1">MGNAAPADFLLLPHIPAVLVVKGRAVHDKAGGGAEHLGVARPAHALVPLGAVGGHVHKVVLLAPLGVENQAVHLFAASLQEADFLQVGVEAVAQKGALIGLAAGPARHLDVPVAVEGEIGAHHGRPSIGNVAVLAQGGAHVVPVEAAVLQQLAELQAQLRALGQVGAQRKAAGDDLAHVQHPLVLFGVEQRGVELLLPPDGQAQAGGGLRQRQAGGDLLHRQPAGPIPFGGSPVGDFLGLLVALAVVNAAEGHRGGRALPGVIRPQHHFPAVRQQNADLQPEEELLGEGLRREALFPCLIAGGNAPKAKPALGPAVAQHGPQGVLALVEQPGDVVRLVLQPPVIGGAARGQVLVPGLFPVGVQLVEPQAHGVNPGADRLPLQEEAAAQQGMDAAFQGRGDPLAGPFLPHFGGFKPGGGAGGLLAVVPLHRHPPPIPGAGLQVQGDGAVYRGQAGVLAGVPQQPLEAFVRGHFHPRPLLLFRVRFLHGPGKRQAVHLKPQGVCQPVDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9D3</accession>
    <name>R6Y9D3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type I restriction-modification system methyltransferase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27914">
        <property type="protein sequence ID" value="CDD27914"/>
        <property type="gene ID" value="BN815_00057"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006306">
        <property type="term" value="P:DNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="300"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="637" mass="71694" checksum="5A1ADAD1A7A39906" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA57</accession>
    <name>R6YA57_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Recombination protein RecR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recR</name>
        <name evidence="9" type="ORF">BN815_00061</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the RecR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28149">
        <property type="protein sequence ID" value="CDD28149"/>
        <property type="gene ID" value="BN815_00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01025">
        <property type="entry name" value="TOPRIM_recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00017">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000093">
        <property type="entry name" value="DNA_Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023627">
        <property type="entry name" value="Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023628">
        <property type="entry name" value="Rcmb_RecR_C4-type_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015967">
        <property type="entry name" value="Rcmb_RecR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034137">
        <property type="entry name" value="TOPRIM_RecR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30446">
        <property type="entry name" value="PTHR30446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02132">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111304">
        <property type="entry name" value="SSF111304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00615">
        <property type="entry name" value="recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01300">
        <property type="entry name" value="RECR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="82"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="7">
        <location>
            <begin position="59"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="199" mass="21816" checksum="6CCB33020D3EE789" modified="2013-07-24" version="1">MAQYHVPPLEVLVEKFESLPGIGHKSAQRLAYHVLGMTQEEAQSFAQAILDAHEKIHTCKVCCNLTDDELCPVCRSGSRDKSTICVVEEPKDVFALERAGEYNGLYHVLHGAISPLSGIGPDQLRIKELLARMDPSVGEVIMATNPTVEGEATAMYLSRLLKPLGVKVTRLAYGIPVGGDLEYADEVTLQRAMEGRQEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA61</accession>
    <name>R6YA61_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00159</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30810">
        <property type="protein sequence ID" value="CDD30810"/>
        <property type="gene ID" value="BN815_00159"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001667">
        <property type="entry name" value="DDH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01368">
        <property type="entry name" value="DHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DHH" evidence="1">
        <location>
            <begin position="16"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="DHHA1" evidence="2">
        <location>
            <begin position="228"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="319" mass="34053" checksum="DF8C7466E6622F6D" modified="2013-07-24" version="1">MLDCAQTAALLRSWDKILVMSHASPDGDTLGSASALLRGLVSLGKQVRFFCADPVPEKFQYLFAGIPLGDFAPDHVMTVDVADKRLLGEAPPEYLARVELAIDHHGTHVPFSQERWVDAHAAAAVELIYALLVELGVELAPAVADCLYTGLTTDTGCFRYRSVTPRTHRIAADLLERGARGADINRAMFESKSRGQVEAERLAMDSLRFSSNGLVALVKIPLDIYGKTGASESDLDGIASLPREIQGVVLGVTLKEKEGKVKVSLRANPPADASVLCARFGGGGHQGAAGCSLEGATLEEAQAALEQACQAYLQELNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA71</accession>
    <name>R6YA71_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative septum site-determining protein MinD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30820">
        <property type="protein sequence ID" value="CDD30820"/>
        <property type="gene ID" value="BN815_02007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="25575" checksum="79CED91A82095E20" modified="2013-07-24" version="1">MGIATVITSGKGGVGKSTLAVGLGRALAQRGRRVLLVDCDAGLRSLDRMTGTEENLVFDIADVVFARCSPAEAIYPCGGAEGLFLLPAPSLGEDFIRPGVMKKLVPLLKRYYDHVLLDSPAGVGGGFRSAAAGADRALVVCNPDPVCVRGAATARELLERLEVPRARLVINRFNGKLFQQTGAYGDLDGVIDGAGIRLLGVVPEDYSLAASFLRGQGAPEDSPGMKALCRIAGRIEGESIPIAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAW5</accession>
    <name>R6YAW5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28409">
        <property type="protein sequence ID" value="CDD28409"/>
        <property type="gene ID" value="BN815_00843"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="16270" checksum="E07CBB1310C67B63" modified="2013-07-24" version="1">MKPIDTFSYELGAADCFCEMVRAGVKRLALAHPCDSPQERDQYLPYFEELCRKYGVKLYVEDEAFLTDLFPLSLNQGKYNALFYQEGSALQEYLALKGEKKAALAQGTYGQARRDIAWRFGKLLSYTDEGIQRLLESNTEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB92</accession>
    <name>R6YB92_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallo-beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31175">
        <property type="protein sequence ID" value="CDD31175"/>
        <property type="gene ID" value="BN815_02319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07731">
        <property type="entry name" value="ComA-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035681">
        <property type="entry name" value="ComA-like_MBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="70"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="321" mass="35272" checksum="C94E7B716C5AC593" modified="2013-07-24" version="1">MSTQGAKRHAAREKRRRLLERIALVALAALLVFSATPVGRAFWGRLYTLSGFRGPVEAAPLEIHFIDVGKADAILLRCQGQAALLDAGTYASGDRVVDYLRRMGVERLEYAIASHPDSDHTGGMAQVLEEIPVEALVVYPWPDEMRQTLEYRALEEASFSHGVPVKTVGPGDSLPLGETSLEVLGPLEEYEETNDCSLVLRLDYLGFSALFCGDIEAQAELDLVKAGAALDADLLKVAHHGSASSSSRRFLEAVTPAYAVVSVGPDNSNLPREETLLRLEEVGATIYRTDTDGDLVFSWDGEQLSLWSEYHEELERTEWNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBF5</accession>
    <name>R6YBF5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Probable dual-specificity RNA methyltransferase RlmN</fullName>
            <ecNumber evidence="12">2.1.1.192</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">23S rRNA (adenine(2503)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">23S rRNA m2A2503 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Ribosomal RNA large subunit methyltransferase N</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">tRNA (adenine(37)-C(2))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">tRNA m2A37 methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">rlmN</name>
        <name evidence="14" type="ORF">BN815_02399</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>adenosine(2503) in 23S rRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(2503) in 23S rRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42916"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10152"/>
            <dbReference type="Rhea" id="RHEA-COMP:10282"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>adenosine(37) in tRNA + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2-methyladenosine(37) in tRNA + 5'-deoxyadenosine + L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43332"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10485"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74497"/>
            <dbReference type="EC" id="2.1.1.192"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="12">Reaction proceeds by a ping-pong mechanism involving intermediate methylation of a conserved cysteine residue.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. RlmN family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.192" evidence="12"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31255">
        <property type="protein sequence ID" value="CDD31255"/>
        <property type="gene ID" value="BN815_02399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070040">
        <property type="term" value="F:rRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002935">
        <property type="term" value="F:tRNA (adenine-C2-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01849">
        <property type="entry name" value="RNA_methyltr_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040072">
        <property type="entry name" value="Methyltransferase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027492">
        <property type="entry name" value="RNA_MTrfase_RlmN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004383">
        <property type="entry name" value="rRNA_lsu_MTrfase_RlmN/Cfr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30544">
        <property type="entry name" value="PTHR30544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006004">
        <property type="entry name" value="CHP00048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00275">
        <property type="entry name" value="adenosine_C2_methyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00048">
        <property type="entry name" value="rRNA_mod_RlmN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="10 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 12 14" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="7 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 12 14" id="KW-0808">Transferase</keyword>
    <keyword evidence="12" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="102"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="12">
        <location>
            <begin position="163"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="12">
        <location>
            <begin position="218"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="96"/>
        </location>
    </feature>
    <feature type="active site" description="S-methylcysteine intermediate" evidence="12">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="352" mass="39657" checksum="28C705D8313B4944" modified="2013-07-24" version="1">MNRELTDPRDIKSKTLPQLQEELAALGLPKYRAQQVYRWLHRGVTDFSQMSDLSRALREDLAQRYYIAWAQVERKRVSQDGTVKYLFRLPDGEHVESVLMHYHHGTSICISTQVGCKMNCSFCATGQSGFARNLSPSEILSQVQAASVDAGERISHIVLMGMGEPLDNYENVLRFLELVTSEEGLNVSMRHISLSTCGLVDKIYDLADKKLQLTLSVSLHAPNDEIRSRTMPVNKRWNMEQLLKACKYYSTTTGRRISFEYAMISGVNDMDWCARELASRLRGILAHVNLIPVNDVTGTGYKKSGIPRQKRFVALLEERGVTATVRRTLGSDIEASCGQLRRKVEGGTGHES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBL2</accession>
    <name>R6YBL2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Amino acid carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00250</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the alanine or glycine:cation symporter (AGCS) (TC 2.A.25) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000397">
        <property type="protein sequence ID" value="CDD31315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31315">
        <property type="protein sequence ID" value="CDD31315"/>
        <property type="gene ID" value="BN815_00250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015655">
        <property type="term" value="F:alanine:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001463">
        <property type="entry name" value="Na/Ala_symport"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30330">
        <property type="entry name" value="PTHR30330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01235">
        <property type="entry name" value="Na_Ala_symp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00175">
        <property type="entry name" value="NAALASMPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00835">
        <property type="entry name" value="agcS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00873">
        <property type="entry name" value="NA_ALANINE_SYMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0769">Symport</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="55"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="197"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="223"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="333"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="368"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="418" mass="42635" checksum="53CCD6B070A354B3" modified="2013-07-24" version="1">MAEALSSLLWGWHVLGGILAAGAFFTVATGFYQLRCLGRWMKAALRPPPRQGGKLSSFQALSTALAGSIGTGNIVGVAAAITVGGPGALFWMWLSALLGMMTVYAENYLSAKHPGAPGALGYIRRAGRLGGLLAGVYAVGCCLSSLAMGDMVQVGAAAAALENLGLPVWLSAGGMALLAFWVARGGLSLAGRIAGRLVPAMTLLFFAASLGVLWVFRENLPRAVASVFSGAFSPGAGAGGAAGWLLAMKVGVTRGVFTNEAGLGSAAFAYDGVEGRSPGELGCLGIFQVFADTLLMCTVTGLCILVCRSPVLEGAALTFYAYESALGPWGGRAVSLCTALFAAATLTAWCGYGREGLFYLTGGRGKNAYALAAAAAAALGCCLPLGEVLRLGDAMNGLMALPNLAALFLLRREVAVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBL6</accession>
    <name>R6YBL6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00255</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000398">
        <property type="protein sequence ID" value="CDD31320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31320">
        <property type="protein sequence ID" value="CDD31320"/>
        <property type="gene ID" value="BN815_00255"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="10"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="158" mass="18705" checksum="E4D41DD851D5BFBB" modified="2013-07-24" version="1">MDITFHTGEGRFNYRVCAIFLHQNKVLAMRDERSPYYYLPGGRVALGETAQDALQRELQEELDISARIQRPLWLNQAFFTEDVDGEFTHELCLYFLMDAAGTGLLERGESFTRYEGQRRHEFIWLPLEELQDKYFYPLFLKEGLSHLPDQFTLREEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBV0</accession>
    <name>R6YBV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AP_endonuc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00944</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28754">
        <property type="protein sequence ID" value="CDD28754"/>
        <property type="gene ID" value="BN815_00944"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="24"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="31413" checksum="546CBBF8B401587D" modified="2013-07-24" version="1">MNNVNLQIYSFGFDCGLSFLDKIRKAGELGYAGVELVRDYEGIPAQDVVNALKEAGIPAVSAHVGLDFIEQDLPYLAELGVKYVACPMAPFNTAEEAKELAADLNRLGKLAKEYSITIGYHNHTGEFYVDQGKYLLDWVMENTDPQLVAFEIDCGWASAAGVNPVEYIQQHAGRICAIHVKENNAVIGADKPQSRHAPAQHPKFELDEDGKPIIPPEFKRMMEEREKLNVPTGTGIVDWKAVKAAADAQWDGEVLYVVEREASYGGKDRVTCLAEDLAWLKENL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBX2</accession>
    <name>R6YBX2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Acetyltransferase</fullName>
            <ecNumber evidence="3">2.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00951</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28779">
        <property type="protein sequence ID" value="CDD28779"/>
        <property type="gene ID" value="BN815_00951"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039369">
        <property type="entry name" value="LacA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43017">
        <property type="entry name" value="PTHR43017"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 3 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU367021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="114" mass="12575" checksum="B6186D4C1CD2452E" modified="2013-07-24" version="1">MDDTHVYIGDNVMFGPNVTITAAGHPVDPDLRRQVYQYNFPVRIEENVWVGAGVIILPGVTIGKNSVIGAGSVVTKDIPANVVAMGVPCRVVREIGPRDKEFYFRDYRTEDGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCD9</accession>
    <name>R6YCD9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000112">
        <property type="protein sequence ID" value="CDD28954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28954">
        <property type="protein sequence ID" value="CDD28954"/>
        <property type="gene ID" value="BN815_00001"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="278" mass="30935" checksum="1A737AF69C0004D3" modified="2013-07-24" version="1">MMDRPSPPLTALALAPFFYSALDGSPLLQKLSLIWAALYLLLCAAYRGIQRLDHYLELNRGMAGLPARRIARTTGLALAGMLVLAAGLLLPALTLEDSYLRIDPSPPERTSAVRLEEITPASGGMEVNMAEALQQEFGEPPKMNPVVQFILGAVLCVIGGGFGVYLLYLVIRNFRGTFVDQRDVVQFLGRDTEGEEEPLPQERVRGPAVWDRSPNAQVRRKYRRAVLRSAKEAPPQWASPQEIETRAGLEDSQLHRLYEKARYSQEGCTSQESRSLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDD5</accession>
    <name>R6YDD5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Translation initiation factor IF-3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infC</name>
        <name evidence="8" type="ORF">BN815_01117</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the IF-3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29294">
        <property type="protein sequence ID" value="CDD29294"/>
        <property type="gene ID" value="BN815_01117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00080">
        <property type="entry name" value="IF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036788">
        <property type="entry name" value="T_IF-3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036787">
        <property type="entry name" value="T_IF-3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019813">
        <property type="entry name" value="Translation_initiation_fac3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001288">
        <property type="entry name" value="Translation_initiation_fac_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019815">
        <property type="entry name" value="Translation_initiation_fac_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019814">
        <property type="entry name" value="Translation_initiation_fac_3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10938">
        <property type="entry name" value="PTHR10938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00707">
        <property type="entry name" value="IF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05198">
        <property type="entry name" value="IF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54364">
        <property type="entry name" value="SSF54364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55200">
        <property type="entry name" value="SSF55200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00168">
        <property type="entry name" value="infC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00938">
        <property type="entry name" value="IF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3 4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IF3_N" evidence="7">
        <location>
            <begin position="13"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="IF3_C" evidence="6">
        <location>
            <begin position="89"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="20406" checksum="8E29785C65321A1E" modified="2013-07-24" version="1">MEVLPISKQELQINEQIRDKELRVIDSDGNQLGIMSLRQALEIAEQKNLDLVKIAPQANPPVCKIIDYGKFRFEQAKREKEARRNQRVVEIKEVRLSLNIDTHDFETKKNHALRFISDGNKVKASIRFRGREMGHPELGLEIMRKFSDAMSEVAVVEKPAKLEGRNMLMFLAPKPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE12</accession>
    <name>R6YE12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29499">
        <property type="protein sequence ID" value="CDD29499"/>
        <property type="gene ID" value="BN815_01174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="43" mass="4697" checksum="15034A72E2B727C6" modified="2013-07-24" version="1">MNMDVVMEALGIMGKGMLGIFVVIVVIALLVYLLTKITSRKKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE31</accession>
    <name>R6YE31_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PNPLA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01182</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29514">
        <property type="protein sequence ID" value="CDD29514"/>
        <property type="gene ID" value="BN815_01182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07208">
        <property type="entry name" value="Pat_hypo_Ecoli_yjju_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037483">
        <property type="entry name" value="YjjU-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="6"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="37"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="159"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="32141" checksum="14E23A66EEED3AB9" modified="2013-07-24" version="1">MEKWALAMEGGSLRCMFSAGAVDVMMERQLWANGVFGVSAGALTGVNYVSRQVGRTAQVNLDFVNDKRYLGLGNLIFKKSIFNFDFLFGEISDSLLPLDREEFARSEMEFTAVTTDCRTGQPAYWEKHRCGDIYGAIRASASMPLLSPTVEVEGIPCVDGGVSVSIPYRKPLEEGYGKVVVITTREHGYRKPQTPRALANLYAKYYKPYPQLVRALLETPRRYARELDELDRLEAQGKVFVLRPPEPVTVSRTEKDVTKLRALYAQGRQVCQERWEELEQYLNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE46</accession>
    <name>R6YE46_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01187</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29529">
        <property type="protein sequence ID" value="CDD29529"/>
        <property type="gene ID" value="BN815_01187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="51" mass="5292" checksum="D80664994637D4F3" modified="2013-07-24" version="1">MVAVTTSEDGVQQIIVLEVAHVEDDLASSSSVSENAELATEESALEEATGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE95</accession>
    <name>R6YE95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29599">
        <property type="protein sequence ID" value="CDD29599"/>
        <property type="gene ID" value="BN815_01202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="10202" checksum="2332BC2BC221A8E7" modified="2013-07-24" version="1">MEKKIEYDTEYMARELIELCPQAPVELLQELRWLYRHQELGAYLCGRGPQEREKRQDLLRQLQEDGHPAYLALAAYALLLENKNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFK3</accession>
    <name>R6YFK3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">V-type ATP synthase alpha chain 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01368</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000193">
        <property type="protein sequence ID" value="CDD30099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30099">
        <property type="protein sequence ID" value="CDD30099"/>
        <property type="gene ID" value="BN815_01368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006754">
        <property type="term" value="P:ATP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022878">
        <property type="entry name" value="V-ATPase_asu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43607">
        <property type="entry name" value="PTHR43607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="10"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="376" mass="41623" checksum="8CBA64A656C6C777" modified="2013-07-24" version="1">MIDTFFPIAKGGVAAVPGPFGSGKTVVQHQLAKWAEADIVVYIGCGERGNEMTDVLNEFPELKDPKTGQSLMQRTVLIANTSDMPVAAREASIYTGITIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAQFYERAGRVITLGRQQREGTLSVIGAVSPPGGDISEPVAQATLRIVKVFWGLDSSLAYKRHFPAVNWLTSYSLYLDTLEPWFAQNVAADWVQLRAKLMGLLQDEAELEEIVQLVGMDALSAPDRLKLEAARSIREDFLHQNAFDEVDTYTPLSKQHAMMELILSYYERSLEALGKGVGIEALVALPVREQIGRYKYTTAEEAPGRFAAIQAQLERELAQALEAKEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFP5</accession>
    <name>R6YFP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RutC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000197">
        <property type="protein sequence ID" value="CDD30149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30149">
        <property type="protein sequence ID" value="CDD30149"/>
        <property type="gene ID" value="BN815_01394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006056">
        <property type="entry name" value="RidA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00004">
        <property type="entry name" value="TIGR00004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13036" checksum="47D62329C7C779A7" modified="2013-07-24" version="1">MNKIHTENAPAAIGPYSQGYEVNGVVYTSGQLPVDPQTGAAPEGITAQAEQSCKNVGAILEAGGSGFEQVFKTLCFLADMKDFAAFNEVYAKYFTSNPARSCVAVKELPKGVLCEIEAIALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFY5</accession>
    <name>R6YFY5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FHA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01497</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30254">
        <property type="protein sequence ID" value="CDD30254"/>
        <property type="gene ID" value="BN815_01497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008523">
        <property type="entry name" value="DUF805"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34980">
        <property type="entry name" value="PTHR34980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05656">
        <property type="entry name" value="DUF805"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="FHA" evidence="2">
        <location>
            <begin position="156"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="25723" checksum="2B07D6DC44E9BB20" modified="2013-07-24" version="1">MSFGQAIVRVFSNYANFQGRARRSEYWYFVLFYGIVMLCLSLLALIPGAVLLTVIFWLGTVVPNLAVSWRRLHDTGRSGAWVFLSLVPLVGVLILILWMAEDSQPGTNPFGPNPKGAQATAARQEGRNIPQRAAVQVQCINGPMQGQTFSLGPQGLWFGRDAACAVRFPDGSPGISRVHCRLGWDRGVPVLVDLNSRFGTFLVSGKQLPPNYPEAVSPGARFYLGNPGNLFQIIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGG9</accession>
    <name>R6YGG9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00686</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000052">
        <property type="protein sequence ID" value="CDD27651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27651">
        <property type="protein sequence ID" value="CDD27651"/>
        <property type="gene ID" value="BN815_00686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036156">
        <property type="entry name" value="Beta-gal/glucu_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006103">
        <property type="entry name" value="Glyco_hydro_2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006104">
        <property type="entry name" value="Glyco_hydro_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02836">
        <property type="entry name" value="Glyco_hydro_2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02837">
        <property type="entry name" value="Glyco_hydro_2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49303">
        <property type="entry name" value="SSF49303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_2_N" evidence="5">
        <location>
            <begin position="20"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_2_C" evidence="4">
        <location>
            <begin position="278"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="588" mass="67355" checksum="3765D11B3D6DE672" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH25</accession>
    <name>R6YH25_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage II sporulation protein R</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01871</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000296">
        <property type="protein sequence ID" value="CDD30664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30664">
        <property type="protein sequence ID" value="CDD30664"/>
        <property type="gene ID" value="BN815_01871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014202">
        <property type="entry name" value="Spore_II_R"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09551">
        <property type="entry name" value="Spore_II_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437491" evidence="1">
        <location>
            <begin position="35"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="22785" checksum="B1A7CA15F1912B90" modified="2013-07-24" version="1">MNAKEHTRKRRLLGRALVCGFVLAALCSFFPFAAACGQLPRDVVRLHVVANSNGAEDQAVKLLVRDAVLEEAARWYQGAGSMEEASSQLCTHLQSIAGAARQVLGEQGVGYSATAQMTEMYFPTRDYGDFRLPAGRYRTLRVTLGEGAGKNWWCVVFPSLCLPAATQEEALLTLPEGERQVVEGGQDVQVKLKAVELWESLREWLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH39</accession>
    <name>R6YH39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">APH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000306">
        <property type="protein sequence ID" value="CDD30684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30684">
        <property type="protein sequence ID" value="CDD30684"/>
        <property type="gene ID" value="BN815_01889"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="9"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="23220" checksum="EAA63078860C6945" modified="2013-07-24" version="1">MLAHGCLQDKYRFYYIATQYSPGKEAGPWLRDATPAQQAAFVERLRQLLPRLHRPTQALPRRDLRQEARGNFRLEKLAPSLREEVLARLEGLPLEPAVLTHGDLTGENLLVQEDGSFVVIDWADAHLAPAWYELGPLAFELLAGEGRLWRQLAAGAEELFVERLLDCLCLHDFGPDFLTNLAHRQGRAGFRSLGEVRQVLEEKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHR0</accession>
    <name>R6YHR0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Diadenylate cyclase</fullName>
            <shortName evidence="10">DAC</shortName>
            <ecNumber evidence="10">2.7.7.85</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Cyclic-di-AMP synthase</fullName>
            <shortName evidence="10">c-di-AMP synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dacA</name>
        <name evidence="12" type="ORF">BN815_00749</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>2 ATP = 3',3'-c-di-AMP + 2 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:35655"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:71500"/>
            <dbReference type="EC" id="2.7.7.85"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably a homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the adenylate cyclase family. DacA/CdaA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.85" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28061">
        <property type="protein sequence ID" value="CDD28061"/>
        <property type="gene ID" value="BN815_00749"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004016">
        <property type="term" value="F:adenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106408">
        <property type="term" value="F:diadenylate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006171">
        <property type="term" value="P:cAMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019932">
        <property type="term" value="P:second-messenger-mediated signaling"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01499">
        <property type="entry name" value="DacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014046">
        <property type="entry name" value="C-di-AMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034701">
        <property type="entry name" value="CdaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045585">
        <property type="entry name" value="CdaA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036888">
        <property type="entry name" value="DNA_integrity_DisA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003390">
        <property type="entry name" value="DNA_integrity_scan_DisA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19293">
        <property type="entry name" value="CdaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02457">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004793">
        <property type="entry name" value="UCP004793"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143597">
        <property type="entry name" value="SSF143597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00159">
        <property type="entry name" value="TIGR00159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51794">
        <property type="entry name" value="DAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="53"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="DAC" evidence="11">
        <location>
            <begin position="96"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD28061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="302" mass="32694" checksum="0D0E1B842E418ED9" modified="2013-07-24" version="1">MVLESVVQYLSELGQNILTAARNFTFKDAIDVAIVTVLLYSAIKLVRETRAGQLVKGIILLIVLFLISYQLDLLMLNAILRAFLSSGIVIVVILFQPEIRKALEQVGHSKVVQSLANTVSAKDKEEGKAETRKAIQGVVDATQILQQLRMGALIVFERQTKLGEIVATGTIIEAAPSSQLIANIFFNKAPLHDGGMIIREGQVYAAGCILPLTSNENVSAELGTRHRAALGMSENSDAVVVVVSEETGQISVAMEGKLTRNYNRVTLREVLESALIGAPEETSSKRILGKLGLTGRTTRKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHT9</accession>
    <name>R6YHT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02128</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30969">
        <property type="protein sequence ID" value="CDD30969"/>
        <property type="gene ID" value="BN815_02128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437766" evidence="2">
        <location>
            <begin position="25"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="231"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="28391" checksum="11D9873F65FE5B16" modified="2013-07-24" version="1">MRNFLHFTASGLRRTVLAPSFVGAAVGQCALSLLSVYEEITLVGADSTASYLYEMGIYANFWVLFLLFGAIPGATLFCADWENRYIRFSAARAGKAAYGAGTAAACYLAGTGAVFVGEWLFLGALCLRYPLLAPGSTVINSWMSTPFAPLLTPQRILLFYAARFLIKACCAGFFSVAALWVSTLLPNVFVALASPLLLNYLWENVAIFLKLPAPLLFASVAKGNIPIQDSLLWTALYPVALFTGLAAVFGALFTAGAKRRLEHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIZ0</accession>
    <name>R6YIZ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Tryptophan synthase beta subunit TrpB2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00320</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31389">
        <property type="protein sequence ID" value="CDD31389"/>
        <property type="gene ID" value="BN815_00320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006316">
        <property type="entry name" value="Trp_synth_b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023026">
        <property type="entry name" value="Trp_synth_beta/beta-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48077:SF6">
        <property type="entry name" value="PTHR48077:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001413">
        <property type="entry name" value="Trp_syn_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500824">
        <property type="entry name" value="TrpB_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01415">
        <property type="entry name" value="trpB_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PALP" evidence="9">
        <location>
            <begin position="80"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="454" mass="49879" checksum="B8946F672572C4A1" modified="2013-07-24" version="1">MAQIPYKIYLDESELPQAWYNLRADMKNKPAPLLNPATHQPMTFDELRPVFCDELVRQELDDTTPYFDIPGEILDFYKMYRPSPLIHAEFLEKALGTPAKIYYKFEGNNTSGSHKLNSAIAQAYYAKQQGLKGVTTETGAGQWGTALSMACSFFGLDCKVFMVKVSYEQKPFRREVMRTYGASVTPSPSETTAVGRKILEAHPGTTGSLGCAISEAVEVATGLEGYRYVLGSVLNQVLLHQSVIGLETKAACDKYGIKPDIIIGCAGGGSNLGGLISPFMGEKLRGEADYQFIAVEPASCPSFTRGKYAYDYCDTGMVCPLQKMYTLGSNFIPSANHAGGLRYHGMSSVLSQLYADGLMEARAVEQTRVFEAAELFARVEGTLPAPESSHAIRVAIDEALKCKETGEEKTIIFGLTGTGYFDMTAYQKFNDGLMTDYIPTDEELEASFQQLPQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ07</accession>
    <name>R6YJ07_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminopeptidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00337</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31409">
        <property type="protein sequence ID" value="CDD31409"/>
        <property type="gene ID" value="BN815_00337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008234">
        <property type="term" value="F:cysteine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00585">
        <property type="entry name" value="Peptidase_C1B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000169">
        <property type="entry name" value="Pept_cys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004134">
        <property type="entry name" value="Peptidase_C1B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10363">
        <property type="entry name" value="PTHR10363"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03051">
        <property type="entry name" value="Peptidase_C1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005700">
        <property type="entry name" value="PepC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00139">
        <property type="entry name" value="THIOL_PROTEASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0788">Thiol protease</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="364"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR005700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR005700-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="50543" checksum="1ED466EE22BFF90A" modified="2013-07-24" version="1">MEKNITFEQLAAYEKAFDADRANQVAMRAVTTNGVVKAATNQEVYRRDRHQYSISLEQGNITNQKQSGRCWMFAALNTMRFAIMKKLDLDTFELSQNYTLFYDKLEKANYFLESILDTLEEPTSGRVIAHLLMAPLNDGGQWDMFCNLIEKYGVVPKDAMPETVCSSATREMAGYMTRKLREYACTLRTGHQNGKSLEELRQEKDAMMATIYNMLCVCLGKPPKTVTLEVRNKKKEFIRDTDLTGKEFFQKYVGWDLSQYVSLINAPTADKPYHKTYTVKLLGNVVEGRPVKYLNLPVEDLKAAAIAQMQDGQPVWFGCDVGKCSLREGGVLDLEAIQAGELFGTDFTMDKAQRLDYGESLMTHAMVFQGVDLDEDGKPTRWRVENSWGKDAGENGYYVMSDAWFSEYTYQVVVNKKYLTAQQVEELSQEPIQLEPWDPMGSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ74</accession>
    <name>R6YJ74_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00883</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28581">
        <property type="protein sequence ID" value="CDD28581"/>
        <property type="gene ID" value="BN815_00883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="326"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="368"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="400"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="424"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="50018" checksum="94783183E3C21F84" modified="2013-07-24" version="1">MKLPFRPGMRRGSFEIDMTNGPLVGKIIRFAIPLALSGILQLLFNAADIIVVGQFVGPQALAAVGSTSALINLIVNLFIGLSIGVNVLVARYYGGGNHKDLRETVHTAVLVSVISGIILIFVGIGLSRPLLELMGTPADVIDQSVLYMRIYFVGMPVMMLYNFGSAILRAVGDTQRPLYFLLIAGVINVLLNLLFVIVFHMGVEGVAIPTVISQCVSATLVLLCLVKSDAVYRVNLKELHIYKEKLLQMIKIGVPAGIQSATFSISNVLIQSTINSFGSIAMAGSTAGGNIEGFVWTAMDAFTQSTLSFTGQNYGAKKFHRITKVVWYNLGLVTVVGLVLGIGAYLVGPWVLQVYSSDPEVIAYGLERMLLVCTPYALCGVMNVLVGAMRGLGSSLTPMVVSIFGVCVLRVVWIYTVFPLDPSFAMLFLSYPVTWAVTAAIEVVCFFVIRKKAIARAGGMAVDAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJJ8</accession>
    <name>R6YJJ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">(3R)-hydroxymyristoyl-ACP dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000430">
        <property type="protein sequence ID" value="CDD31584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31584">
        <property type="protein sequence ID" value="CDD31584"/>
        <property type="gene ID" value="BN815_00409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013114">
        <property type="entry name" value="FabA_FabZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30272">
        <property type="entry name" value="PTHR30272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07977">
        <property type="entry name" value="FabA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15193" checksum="9670D4F245B09177" modified="2013-07-24" version="1">MNKEEIKKILPHREPMLLVDEVELIDGVAHGKCHIRGDEYFLQGHFPGNPVVPGVIQCEMMAQSACVLLASGAAEGCTPMFTSLDKVKFRGQVKPGDTLETECEITRQRGSFYFAKGKGSVNGKVCVSAEFSFALVKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJL6</accession>
    <name>R6YJL6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sigma-70 family RNA polymerase sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00943</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28751">
        <property type="protein sequence ID" value="CDD28751"/>
        <property type="gene ID" value="BN815_00943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="19"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="106"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="170" mass="19898" checksum="C1DD192ED8DB0B10" modified="2013-07-24" version="1">MTDLVKRAKKGDKEAFILLMDHHRQMLYNTALLVLHREDDALDAIQDTILACWENLPSLQKDRYFKTWLVRILLNKCADIQRGQSHYAFVEELLESAEEPDWDTRVDVRRAMAKLGGQDQLILSLFYYDDFSVRQIAEALSLSEGAVRTRLTRSRDRFKKSYLQEKGECL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJN2</accession>
    <name>R6YJN2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Cysteine desulfurase IscS</fullName>
            <ecNumber evidence="7">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">iscS</name>
        <name evidence="10" type="ORF">BN815_00948</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cofactor biosynthesis; iron-sulfur cluster biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer. Forms a heterotetramer with IscU, interacts with other sulfur acceptors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000104">
        <property type="protein sequence ID" value="CDD28766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28766">
        <property type="protein sequence ID" value="CDD28766"/>
        <property type="gene ID" value="BN815_00948"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00266"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044571">
        <property type="term" value="P:[2Fe-2S] cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00331">
        <property type="entry name" value="Cys_desulf_IscS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010240">
        <property type="entry name" value="Cys_deSase_IscS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017772">
        <property type="entry name" value="Cys_deSase_NifS_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11601:SF34">
        <property type="entry name" value="PTHR11601:SF34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03402">
        <property type="entry name" value="FeS_nifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="9">
        <location>
            <begin position="5"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="7">
        <location>
            <begin position="72"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="7">
        <location>
            <begin position="201"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="7">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via persulfide group" evidence="7">
        <location>
            <position position="326"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
            <note>ligand shared with IscU</note>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7">
        <location>
            <position position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="43810" checksum="58647C3DD0D8BBE2" modified="2013-07-24" version="1">MNRKVYADNAATTAVSPQVLEAMLPFYKEVYGNPSSLYALGQEAKRPLEEARATVARCLGAEPREIYFTSCGTESDNWAIKGAARAMKRKGKNHIITSAFEHHAVLHTCQALEKEGFTVTYLDVHEDGIVRPQELEEAITEETGLVTIMYANNEIGTIQPIPELGAICKKHGVLFHTDAVQAVGNVHIDVKEQNIDMLSLSGHKLHAPKGVGALYIRTGVVLPNFIDGGAQERGKRGGTENVASIVGLATAMEQACSTMDQRVERLTAMRDKLIGEILKIDRSRLNGHPTQRLPGNASFCFQGVEGESLLLMLDLKGISASSGSACTSGSLDPSHVLLAIGLPHEVAHGSLRLSFGDYNTMEDIDYIIETLPPIIERLRSMSPLWDAIQQGRVNYDQYTEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK52</accession>
    <name>R6YK52_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00998</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28921">
        <property type="protein sequence ID" value="CDD28921"/>
        <property type="gene ID" value="BN815_00998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="171"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="205"/>
            <end position="212"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="425" mass="47350" checksum="966E2007D4B447AE" modified="2013-07-24" version="1">MYVCSLRTNKWSYDHRQEGAALGQKMSYIRQTAGDRGALKDIQIFGMGSWLRQVHDAVLKLFRDFQLREQRVRLLGDLAEVALTFLRNGAAYGYLLALALGEGLSVSEFLLYFTAVGNFTTWVTGILKGFGELHQFSLELSSVRGYIEAPEPFRMEGGKAIEPDTSLPYTLELRDVSFRYPGAEKDTLSHIDLTVRPGEKLAIVGLNGAGKTTLMKLCCGLLDPTGGQVLLNGEDIRDFNRRDYYRLFSTVFQDFSVFDTTFADNVTQAPESPDTAGMEDAVKRAGLWEKYQSLPQGGATHIGQGIYEDGLLLSGGELQRLMLARALYKNGPIIILDEPTAALDPVAEMEVYENFDKIVGDKTAVYISHRLSSCRFCDDIAVFDHGHIVQQGSHDALVEAPGKYQELWHAQAQYYAKQEKEPGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKV3</accession>
    <name>R6YKV3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01091</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29216">
        <property type="protein sequence ID" value="CDD29216"/>
        <property type="gene ID" value="BN815_01091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="138"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="17668" checksum="2FC35EDA845EE60C" modified="2013-07-24" version="1">MPHRGLQLFRHDFGGQRPAGGGPLPGVVVGLVAHVFPVAVGGEGHPQVHQLHKGAHRARRLRQGRVPVDAAPGKEVFRQLVDAVLGVGAQGELVIGLLVAACVPGGAHVHPLGEQGDVPPAQVEQGVRGVKARAARAHHHGVQSVEGHPLAPQGDFPHPLQPPQVEAAVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLJ7</accession>
    <name>R6YLJ7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4130 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29446">
        <property type="protein sequence ID" value="CDD29446"/>
        <property type="gene ID" value="BN815_01157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023875">
        <property type="entry name" value="DNA_metab_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025404">
        <property type="entry name" value="DUF4130"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13566">
        <property type="entry name" value="DUF4130"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03915">
        <property type="entry name" value="SAM_7_link_chp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4130" evidence="1">
        <location>
            <begin position="86"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="28927" checksum="2F2A4983E505CD36" modified="2013-07-24" version="1">MPDRSTVIYRYDGSYQGFLCCVAQCFQDKALPVSIRPYDEEQQSLYGSKDIPTRLELAQRVERSIPRRISPQALRLVREGFLTTLPEREMALLRFLLLGYKYGSPVTRMTTHPAVHALEKAVLALNNEAHHVLEFLRFADCGEFLAAKIQPQGKVLPLVAPHFCDRLPSESFMIYDGAHGMGFLHRADTPGEFFQADQVELPSPSQAELRWQNLWKVFYRTIAVEGRENPQLRRQLCPKRYWPLMTELGDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM19</accession>
    <name>R6YM19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">von Willebrand factor type A domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01209</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29616">
        <property type="protein sequence ID" value="CDD29616"/>
        <property type="gene ID" value="BN815_01209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="556"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="318"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="340"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="374"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="736" mass="82662" checksum="D55805FE350B573D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM72</accession>
    <name>R6YM72_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01234</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the manganese catalase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29706">
        <property type="protein sequence ID" value="CDD29706"/>
        <property type="gene ID" value="BN815_01234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007760">
        <property type="entry name" value="Mn_catalase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05067">
        <property type="entry name" value="Mn_catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="57" mass="6761" checksum="154B12E135DF35C8" modified="2013-07-24" version="1">MTYDNILRFADDPDVRDPIKFLREREIVHFQRFGEANHTKLSKREPPAGHRPQGIFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMW4</accession>
    <name>R6YMW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01314</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29936">
        <property type="protein sequence ID" value="CDD29936"/>
        <property type="gene ID" value="BN815_01314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="189" mass="20565" checksum="E7B36CAB3822CC27" modified="2013-07-24" version="1">MRELSLNVMDIAQNSISAGASLITIRVEEDRPADTLSISVEDNGKGMSPETVQKVIDPFYTTRTTRSVGLGVPLFKMEAEMTGGSFQIDSQLGVGTTLTAVFKPSSVDMIPLGDINGTVQLLISCNPTLDFIFHRSLRTGEGERREFSLQTAELREVLGEDVPLDTPDVVLWIKDYLAEQTAALLQGST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNM1</accession>
    <name>R6YNM1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6 7">Elongation factor Ts</fullName>
            <shortName evidence="6">EF-Ts</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsf</name>
        <name evidence="10" type="ORF">BN815_01454</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6 7">Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the EF-Ts family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30211">
        <property type="protein sequence ID" value="CDD30211"/>
        <property type="gene ID" value="BN815_01454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00050">
        <property type="entry name" value="EF_Ts"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036402">
        <property type="entry name" value="EF-Ts_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001816">
        <property type="entry name" value="Transl_elong_EFTs/EF1B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014039">
        <property type="entry name" value="Transl_elong_EFTs/EF1B_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018101">
        <property type="entry name" value="Transl_elong_Ts_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009060">
        <property type="entry name" value="UBA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11741">
        <property type="entry name" value="PTHR11741"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00889">
        <property type="entry name" value="EF_TS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46934">
        <property type="entry name" value="SSF46934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54713">
        <property type="entry name" value="SSF54713"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00116">
        <property type="entry name" value="tsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01126">
        <property type="entry name" value="EF_TS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01127">
        <property type="entry name" value="EF_TS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 7" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4 6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EF_TS" evidence="9">
        <location>
            <begin position="72"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in Mg(2+) ion dislocation from EF-Tu" evidence="6">
        <location>
            <begin position="81"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="32871" checksum="166223E9B7E39CE7" modified="2013-07-24" version="1">MNFTAKDVAALREKTGCGMMDCKKALTASEGDMEKAIDFLREKGLAASVKKAGRIAAEGVAFATVSEDGKVGVVIEVNAETDFVAKNADFQAFVKTCADTVIEQNPADVEALLACKAAGTEETVDALLKEKILTIGENIKIRRFARYEGAVTSYVHAGGRIGVIVKFDTTDDIAATEGFKAYAHNVAMQIAAMNAEYLDEASVPAERVEKEKEILTQQIVDEGKPANIAEKIVAGRLNKFFKEICLVDQVYVQDSSMTVKQYTESVAKELGGDIKIAAYTRFEKGEGPEKRQDDFAAEVAGMVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNN0</accession>
    <name>R6YNN0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01464</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the sigma-70 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30221">
        <property type="protein sequence ID" value="CDD30221"/>
        <property type="gene ID" value="BN815_01464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014322">
        <property type="entry name" value="RNA_pol_sigma-B/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02980">
        <property type="entry name" value="SigBFG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2" id="KW-0749">Sporulation</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="8">
        <location>
            <begin position="215"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28602" checksum="F29EC6E763818690" modified="2013-07-24" version="1">MQGKVEICGVNTSKLKVLKSDETRELLIKSHNGDKAAREELISGNLRLVLSVIQRFGNRGENPDDLFQVGCIGLMKAIDHFDVDQGVQFSTYGVPMIIGEVRRFLRDNNSVRVSRSLRDTAYKAIQCKERLTAQKNREPTVEEIAQELSMKREDVVLALEAIVEPVSLYEPVFSDGGDTIYIMDQVGDPTGDGDWLEEIAVKQAIQNLSPREKKILSLRFLEGCTQVEVAGQIGISQAQVSRLEKGALNKIKEELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNS0</accession>
    <name>R6YNS0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01504</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30261">
        <property type="protein sequence ID" value="CDD30261"/>
        <property type="gene ID" value="BN815_01504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="166"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="325"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="402" mass="46206" checksum="79ED63307F521A3B" modified="2013-07-24" version="1">MTILLVDSDKRALDREAQRLSRRQSGIVVVLHSSAADAEKFAMHHDVDIVYVREKLDEMSGQELVRRILRFRPTAECHVLGPEEDIPFAGASCREWDPFETEANEFDSPQEENTMVGALVNRMEAKPLGRHYSFAKTEREGDLPMTEHELRGLGRRQLLELMLEQGKEMESSKAAYEKDLDFLKSEHERDLEYLKAEHEKETSQLKKELEQAKAAIKEQANSVNEAELEAQKSQFEQTVESLKAQHQQDLDALREEHKEETAHLREELEQAKKSLEKREIALNEAGSIAVAALQINGVFEAAQAASQQYIENIRSLSDRQAAICAQRDVENRVEVERKLKEAEEKCAAMEYASKRKCEAMEQEAKQKSEAYWTEVSRRLQSFYENHRELKRLLDFGTPGAQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP76</accession>
    <name>R6YP76_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01622</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30401">
        <property type="protein sequence ID" value="CDD30401"/>
        <property type="gene ID" value="BN815_01622"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="13096" checksum="6CFF201E376A2D19" modified="2013-07-24" version="1">MSGTPENQQPPAPQQDAPPRKRWPVALDVALDCLLFILLQYMVSCVTLSFWMHPLRLAAIFVQFGLYAKFSHDMDKRLGKFWPGLVLSVVCVGVVVALVGLVGYFPVGEAPVRLPWDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPA2</accession>
    <name>R6YPA2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">D-ribose pyranase</fullName>
            <ecNumber evidence="2">5.4.99.62</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01642</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-ribopyranose = beta-D-ribofuranose</text>
            <dbReference type="Rhea" id="RHEA:25432"/>
            <dbReference type="ChEBI" id="CHEBI:27476"/>
            <dbReference type="ChEBI" id="CHEBI:47002"/>
            <dbReference type="EC" id="5.4.99.62"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.62" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30421">
        <property type="protein sequence ID" value="CDD30421"/>
        <property type="gene ID" value="BN815_01642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0062193">
        <property type="term" value="F:D-ribose pyranase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048029">
        <property type="term" value="F:monosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023750">
        <property type="entry name" value="RbsD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007721">
        <property type="entry name" value="RbsD_FucU"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05025">
        <property type="entry name" value="RbsD_FucU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102546">
        <property type="entry name" value="SSF102546"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15698" checksum="84372C62A3BE2774" modified="2013-07-24" version="1">MLKGIPAILSPELLKVLAEMGHGDEIVLADGNFPAESMGQNAVVIRADGHTVPEVLDAVLQLIPLDQYVSQPAALMEVVPGDDVRPTIWEEYRALLAKHGEDPQAVEMMERFAFYERAKKAYAIVATGETAIYANVLLKKGVVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPB0</accession>
    <name>R6YPB0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01647</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30426">
        <property type="protein sequence ID" value="CDD30426"/>
        <property type="gene ID" value="BN815_01647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="137"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="388" mass="43351" checksum="0DD2EF73707DB0D8" modified="2013-07-24" version="1">MLNIAIVGTGNIAPSHVEGLLTFPERCKIVALCDIYPEKAQAMKEKYHLDCQVFDDHQKMLAAGVPIDVVHVCTPPYTHAEIAIHSMDAGKNVVVEKPMATCLKECDEMLAAEERNHVTMGCIAQNRFRDSIYKLRETLNSGLAGKLRVAHVNSLWWRGHCYYDLWWRGLWEKEGGGCTLNHAVHHIDMINWMKGELPQKVTSILSNVMHDNAEVEDLSFSTLQYADGSVAQVTASVVHHGEEQGVELQCEKAKIAAPWSCYASVSKDNGFPNRDEALEGKLADFYNSLPHLPYEGHTGEIDNYLTALEQGQRPMITGKDGRRTIELITAIYKSGSLGQTVTLPIQEDDDFYTFQGLLSHAPHFYEKTASVENFAPDTITVGNYDEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPN1</accession>
    <name>R6YPN1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000269">
        <property type="protein sequence ID" value="CDD30511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30511">
        <property type="protein sequence ID" value="CDD30511"/>
        <property type="gene ID" value="BN815_01724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="8044" checksum="16B55FDE46039803" modified="2013-07-24" version="1">MTASGITSFFGAWTRFIADRNSLTLVVEITMPDSIPQGYTLWNRPRNAMNMVRQVPVMVSMIQKVIRTISP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPY9</accession>
    <name>R6YPY9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative cell division protein FtsL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01863</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000293">
        <property type="protein sequence ID" value="CDD30656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30656">
        <property type="protein sequence ID" value="CDD30656"/>
        <property type="gene ID" value="BN815_01863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011922">
        <property type="entry name" value="Cell_div_FtsL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04999">
        <property type="entry name" value="FtsL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="18"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="33"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="21199" checksum="6AC01299D9EA971B" modified="2013-07-24" version="1">MPRYSSEAYDFSLFEERTSTEERVSNARWDNTQPEEQPREEPKKRSQENVVELPEEELKKNRKPRRHLLRRAAAVLCFGVVFSAVTLVVYNQVQLTELTEEINTTAKQLEEAESLEIQLNMEASAQMDGAAVEQYAQEELGMSKVSGGQVTYVNVAQEDQGTVVREATSGSFWENLWSTIQSWFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQK2</accession>
    <name>R6YQK2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetylglutamate kinase</fullName>
            <ecNumber evidence="7">2.7.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">N-acetyl-L-glutamate 5-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">NAG kinase</fullName>
            <shortName evidence="7">NAGK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">argB</name>
        <name evidence="9" type="ORF">BN815_02043</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the ATP-dependent phosphorylation of N-acetyl-L-glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14629"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acetylglutamate kinase family. ArgB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.8" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30856">
        <property type="protein sequence ID" value="CDD30856"/>
        <property type="gene ID" value="BN815_02043"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003991">
        <property type="term" value="F:acetylglutamate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04250">
        <property type="entry name" value="AAK_NAGK-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00082">
        <property type="entry name" value="ArgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004662">
        <property type="entry name" value="AcgluKinase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037528">
        <property type="entry name" value="ArgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041727">
        <property type="entry name" value="NAGK-C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000728">
        <property type="entry name" value="NAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00761">
        <property type="entry name" value="argB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="8">
        <location>
            <begin position="26"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="66"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7">
        <location>
            <position position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="30534" checksum="C8AFA9F0BD02B0D7" modified="2013-07-24" version="1">MVEFSNNQRAQVLVQALPYIKKYAGKTVVVKYGGNAMIDEGLKNDVMNDIVLMQLVGINVVLVHGGGPEINAMLKKIQKESKFLNGMRVTDQETMDIVQQVLAGKVNKDLVQRLEDAGGKAVGLCGLDGSLLKADQLDTQLGFVGEIREVNAEILQNASANGYVPIVSTVAAGYHGEVFNINADVAAARIAASLGAMKLILMTDVRGLLRDKDDESTLIPVVNVSDVSRLKKEGIISGGMIPKIDCCVDAVRRGVGRAHIIDGRTPHSILVELFTDEGIGTMFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQM5</accession>
    <name>R6YQM5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 14">Formate acetyltransferase</fullName>
            <ecNumber evidence="5 14">2.3.1.54</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 14">Pyruvate formate-lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ORF">BN815_00179</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>acetyl-CoA + formate = CoA + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:11844"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.54"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 14">Fermentation; pyruvate fermentation; formate from pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 14">Belongs to the glycyl radical enzyme (GRE) family. PFL subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.54" evidence="5 14"/>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30876">
        <property type="protein sequence ID" value="CDD30876"/>
        <property type="gene ID" value="BN815_00179"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00920">
        <property type="reaction ID" value="UER00891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008861">
        <property type="term" value="F:formate C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01678">
        <property type="entry name" value="PFL1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005949">
        <property type="entry name" value="Form_AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019777">
        <property type="entry name" value="Form_AcTrfase_GR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001150">
        <property type="entry name" value="Gly_radical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004184">
        <property type="entry name" value="PFL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01228">
        <property type="entry name" value="Gly_radical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02901">
        <property type="entry name" value="PFL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01255">
        <property type="entry name" value="pyr_form_ly_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00850">
        <property type="entry name" value="GLY_RADICAL_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51149">
        <property type="entry name" value="GLY_RADICAL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51554">
        <property type="entry name" value="PFL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="14" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 14" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="10 13 14" id="KW-0556">Organic radical</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 14 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PFL" evidence="16">
        <location>
            <begin position="1"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="domain" description="Glycine radical" evidence="15">
        <location>
            <begin position="621"/>
            <end position="744"/>
        </location>
    </feature>
    <feature type="modified residue" description="Glycine radical" evidence="13">
        <location>
            <position position="719"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00031063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00493"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU368075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="744" mass="83803" checksum="5A3349AF69CBD576" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQS7</accession>
    <name>R6YQS7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000343">
        <property type="protein sequence ID" value="CDD30921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30921">
        <property type="protein sequence ID" value="CDD30921"/>
        <property type="gene ID" value="BN815_02083"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="880" mass="96280" checksum="17D1C25CCDF5854D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQZ9</accession>
    <name>R6YQZ9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadE</name>
        <name evidence="9" type="ORF">BN815_02140</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="CBGU010000354">
        <property type="protein sequence ID" value="CDD30981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30981">
        <property type="protein sequence ID" value="CDD30981"/>
        <property type="gene ID" value="BN815_02140"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041856">
        <property type="entry name" value="NAD+_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="5"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="311"/>
            <end position="318"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="397"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="421"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="426"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="431"/>
            <end position="434"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="557"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="596" mass="65708" checksum="9D3311F6317505F6" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS47</accession>
    <name>R6YS47_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">M18 family aminopeptidase</fullName>
            <ecNumber evidence="10">3.4.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00322</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the peptidase M18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.-" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31391">
        <property type="protein sequence ID" value="CDD31391"/>
        <property type="gene ID" value="BN815_00322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001948">
        <property type="entry name" value="Peptidase_M18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023358">
        <property type="entry name" value="Peptidase_M18_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28570">
        <property type="entry name" value="PTHR28570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02127">
        <property type="entry name" value="Peptidase_M18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00932">
        <property type="entry name" value="AMINO1PTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9 11" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4 9" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="428" mass="46563" checksum="273796C50FE6BC3E" modified="2013-07-24" version="1">MIHQLFDFIQCSPTASHTVATVRAMLLQEGFTQLLETDPWQLEPGGKYFTIRGMSSLMAFQVPKRDFRAFSVVAPHGDSPCFKVKESPEMRVDGKYTKLNTEVYGGMQLALWTDRPLSVAGRLAVRTEKGVKSVLCDIRRDLLLIPGVAIHMNRGVNEGVKLDTQKDTLPLLGGSQADLKAMVAQNAGVAPEDILSWDLYLYSRAQGTVFGGEKEFIAAPRLDDLECVFAATKAFLAGENRENVTVLALFDNEEIGSLTRQGADSTFLGDVLERVALSCGKDREGLYRAIAGGFMLSADNAHAVHPDSPEKSDPTNRCYLNEGVVVKHSPRYASDALTAGVFQAICQRAGVPVQVYYNNSRIPGGGTLGNLSGSHVALPTVDIGLPQLSMHSPYETAGAQDLEYMVQAMEAFYKTVLTVTGQDAYEIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSJ9</accession>
    <name>R6YSJ9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S5</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsE</name>
        <name evidence="11" type="ORF">BN815_00382</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.</text>
    </comment>
    <comment type="function">
        <text evidence="7">With S4 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 9">Belongs to the universal ribosomal protein uS5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31506">
        <property type="protein sequence ID" value="CDD31506"/>
        <property type="gene ID" value="BN815_00382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01307_B">
        <property type="entry name" value="Ribosomal_S5_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000851">
        <property type="entry name" value="Ribosomal_S5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005712">
        <property type="entry name" value="Ribosomal_S5_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005324">
        <property type="entry name" value="Ribosomal_S5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013810">
        <property type="entry name" value="Ribosomal_S5_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018192">
        <property type="entry name" value="Ribosomal_S5_N_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13718">
        <property type="entry name" value="PTHR13718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00333">
        <property type="entry name" value="Ribosomal_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03719">
        <property type="entry name" value="Ribosomal_S5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01021">
        <property type="entry name" value="rpsE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00585">
        <property type="entry name" value="RIBOSOMAL_S5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50881">
        <property type="entry name" value="S5_DSRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S5 DRBM" evidence="10">
        <location>
            <begin position="12"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01307"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="17259" checksum="41F15F34B7EADB0C" modified="2013-07-24" version="1">MASNIDASTLDLQERVVAINRVSKTVKGGRVMKFSALVVVGNGDGIVGFGIGKAAEVPDAIRKGIEDAKKHLTRIAMRGTTIPHDIMGEFGAGRVILKPAAPGTGVIAGGPVRAVVECAGIRDIRAKALRSNNPCNVVRATLAGLTQLRTAEEVAALRGKTAKEIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9H6</accession>
    <name>R6Z9H6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Iron-sulfur flavoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000016">
        <property type="protein sequence ID" value="CDD27142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27142">
        <property type="protein sequence ID" value="CDD27142"/>
        <property type="gene ID" value="BN815_00517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003680">
        <property type="entry name" value="Flavodoxin_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02525">
        <property type="entry name" value="Flavodoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin_2" evidence="1">
        <location>
            <begin position="7"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="21640" checksum="1F0E9BE997E9C318" modified="2013-07-24" version="1">MSLFHKKKALVLFGSPHSHGHTAQLLESFLECFRRHGGWEVEVADLYRLNPHPCTGCKACAKEERCAYPDLDALDKSLRACDLLVVASPVYNFSFPAPVKAWLDRTQRYFEARFALGKKPPIPKHRQAVLLLTMGSQDEFAVKVCTHQLERAFSVMNTTLSAWAVWDATDRGGERKAGAQAAARAIALEILGKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA30</accession>
    <name>R6ZA30_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00595</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the plasmid mobilization pre family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27332">
        <property type="protein sequence ID" value="CDD27332"/>
        <property type="gene ID" value="BN815_00595"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001668">
        <property type="entry name" value="Mob_Pre"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01076">
        <property type="entry name" value="Mob_Pre"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="417"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="258"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="51449" checksum="51AD8585BF922657" modified="2013-07-24" version="1">MARGDGIHRTSARNMRLTTPKLKNAQQHNEREKESYVNQDIVPERSHLNVHFKQPDSGYLEQFEQMEAGGIISTRGIKEDAFRYGELIFDVNSAYFFNHGGYDFAKQFYHDAYQAAIKIVGGEQYILSAVMHADERNRAMSEALGQDVYHYHLHVVYVPVVEKQIRWSKRCKDKSLVGKVKETVMQVSMSKKWASKPVLDEVTGEPLKTAKGKPVLKKSYSVLQDDFFQYMREAGYTDVERGERGSSEEHLTVTQFKVEREQARLAELQETKSEVLTEIGQLQEDKAKAEKSTKEAQTELRLLAPKLKSMEKLAAEYSSDPEDLLPLPDRMESAKSYREKKSKPLLEKIVKVVRSVYRAYLNVCQKFELLQRKYDTEIPYLKKQLAEVKDENAELQETARDYHRLCRAYGPERVAETVAAVKQQEQAEKKQKRSQKRRHDRDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBQ7</accession>
    <name>R6ZBQ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Restriction enzyme BgcI subunit beta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00056</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27912">
        <property type="protein sequence ID" value="CDD27912"/>
        <property type="gene ID" value="BN815_00056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="23"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="194"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="360" mass="41488" checksum="43D3AB318CB1FE5C" modified="2013-07-24" version="1">MKELDEKIWKKFDVFGENGFLHIATTNSSIDSIRLKDGNEKCVPYVTRSESVNGIAQFVSENNYEFGADEAGCITVGLDTQTAFYQPHKFVTGQNIQIVTGDSLNEDSAYFYITILKNQMDAKFNWGGNGATLNRMKRLEAMFPVSDAGTPDYEYMSEYICQKRRGLLRKYRKYLVQRIKELGENVEIPSITKKKWKSFLISDIFKILPGKRLVSAHSTPGDRPFIGALDNNNGVARFVNDTNASLDKNVLGVNYNGNGMVIGFYHPYECIFSDDVKRFHLKYHEDNAFVLLFMKVAILQQKSKFGYLYKFNAERMANTRIMLPVTDEGTPDYQYMEQYSKNMMLRKYKQYLAYLDSRQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDE6</accession>
    <name>R6ZDE6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LrgA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00859</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28507">
        <property type="protein sequence ID" value="CDD28507"/>
        <property type="gene ID" value="BN815_00859"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005538">
        <property type="entry name" value="LrgA/CidA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33931">
        <property type="entry name" value="PTHR33931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03788">
        <property type="entry name" value="LrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="84"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="12986" checksum="AB327BC06E5D49B2" modified="2013-07-24" version="1">MKFIKQFSIILLITFLGELLHILIPLPIPASVYGLVLMLIALRSGLVKVEHVKETAVFLIEIMPVMFIPAGAGLLESWGVLQPIWLPVCIITVATTVIVMAVTGRVTQAIIRAEKKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDN4</accession>
    <name>R6ZDN4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Polysaccharide pyruvyl transferase CsaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00901</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28632">
        <property type="protein sequence ID" value="CDD28632"/>
        <property type="gene ID" value="BN815_00901"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007345">
        <property type="entry name" value="Polysacch_pyruvyl_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019896">
        <property type="entry name" value="Polysacch_pyruvyl_Trfase_CsaB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04230">
        <property type="entry name" value="PS_pyruv_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03609">
        <property type="entry name" value="S_layer_CsaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="3">
        <location>
            <begin position="13"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="191"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="PS_pyruv_trans" evidence="2">
        <location>
            <begin position="392"/>
            <end position="674"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="743" mass="82725" checksum="18EF21CD4EFA70BC" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZH97</accession>
    <name>R6ZH97_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29832">
        <property type="protein sequence ID" value="CDD29832"/>
        <property type="gene ID" value="BN815_01277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="8803" checksum="67729E5F64D3BD06" modified="2013-07-24" version="1">MWVRSPQEYGKLLPPGLPVPFTSRELGKAVGLSPKKATLAAHVLRKLGAISQQGKRGNAFLYVQATAPDTAAATGGCILEKGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHV8</accession>
    <name>R6ZHV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Delta-lactam-biosynthetic de-N-acetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01352</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000189">
        <property type="protein sequence ID" value="CDD30027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30027">
        <property type="protein sequence ID" value="CDD30027"/>
        <property type="gene ID" value="BN815_01352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10948">
        <property type="entry name" value="CE4_BsPdaA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014235">
        <property type="entry name" value="Spore_PdaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10587:SF78">
        <property type="entry name" value="PTHR10587:SF78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438588" evidence="1">
        <location>
            <begin position="43"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="NodB homology" evidence="2">
        <location>
            <begin position="81"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="270" mass="30332" checksum="70312C91F591603D" modified="2013-07-24" version="1">MNGFWQTLRRKRAVLLSLCGVLALCVLATSTARRGSAVPASAEVTNWGLSFQQEGEPPVGNASSEYLAQYNALYRADTQEKILYLTFDAGFENGNTAAILDALKQHNVPAAFFLVGNYLETQPELVCRMVEEGHTVGNHTYSHPDMSAIADAESFRQELEKNEALYREVTGQEMPKLYRPPQGKFCESNLRMAQQLGYRTVFWSLAYVDWYQDEQPTPEQAFEKLVPRVHPGAVVLLHSTSSTNAAILDELLTRWEELGYSFGRLEEITL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI77</accession>
    <name>R6ZI77_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01397</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30152">
        <property type="protein sequence ID" value="CDD30152"/>
        <property type="gene ID" value="BN815_01397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026272">
        <property type="entry name" value="SdpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025962">
        <property type="entry name" value="SdpI/YhfL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37810:SF5">
        <property type="entry name" value="PTHR37810:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13630">
        <property type="entry name" value="SdpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="345" mass="38039" checksum="810FFEAB7834221E" modified="2013-07-24" version="1">MKEMLARHKGKLILSSLVILLPILPAAFAGQTLFLWEPVLLLVSQWVIMLVVLHANRNKEQSPKVLNLVAWILPVLSLLLGVVGQLAQGGADSAYLITALFTFFMGLLFFLIGNYMPKTKQNGAVGIRIKWTLESEENWDATHRYAGKLWCLGGLLLMVCALIPSVLMVILLWFVILAVMVILPTRYSYRFYKSQVAEGKVEKRPVKPRSIVLIAVLVLAFGAFLAWSLFTGDIQYVYGTDSLTVDASGWGDLTIPYGSVTSLEYFEQDPSQDASGFRTNGLGNFKVALGSFENDLYGDYTRYTFASCGACVVLESDGRTIVLNAPDAASTQELYQSLLEKTGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK01</accession>
    <name>R6ZK01_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30782">
        <property type="protein sequence ID" value="CDD30782"/>
        <property type="gene ID" value="BN815_01986"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="108" mass="11901" checksum="8BA4EB10BBFECDDC" modified="2013-07-24" version="1">MQDKKKAPSTAATMQGAYIEQNHKENTTKSPAGQGLFQAATALECLGIELGQTRQLVGLLVENLEQEGTDTMQPERVKVYSDCLWVLFDRLRTLEDVAQSEAAHTYGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK58</accession>
    <name>R6ZK58_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Baseplate J-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000332">
        <property type="protein sequence ID" value="CDD30842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30842">
        <property type="protein sequence ID" value="CDD30842"/>
        <property type="gene ID" value="BN815_02029"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006949">
        <property type="entry name" value="Baseplate_J-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04865">
        <property type="entry name" value="Baseplate_J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Baseplate_J" evidence="1">
        <location>
            <begin position="61"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="353" mass="37027" checksum="7A3BCFF020A1D1B0" modified="2013-07-24" version="1">MDSFEQILQRMEAEYEEKSGGKVEDVSEVGLRLRVLAGELHRLGASLDWLERQAFPQTATGAQLDLHGAQRGVARRAASHATGTVSFSRYLPLSFDLVVPQGTVCATSGEPVVEYETTQDAVLEAGDLTVNVPVRAVVAGAAGNAAAGYVTTLVSAPTGINYASNQEAITGGRDPEEDDTYRRRVLDSIVRGGSGANAGYYQEIALAQPGVTLAQAVPRAGGAGTVTVYLWGEGAAPSGEIIAAVQAELEAQREIGVTVTVTAAQVLNLPIPVKVKLPSEVDFTWATAQVQQAVTAYFDTLGIGEAYLLTDITRAVLEAVPAEKVEFGAGLVEISPMNGTLIRPTSVTVEALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKA1</accession>
    <name>R6ZKA1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH marR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30892">
        <property type="protein sequence ID" value="CDD30892"/>
        <property type="gene ID" value="BN815_02054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="17069" checksum="B2A462C2E690B022" modified="2013-07-24" version="1">MEYREDIGFQIRTLSHLVKRTVDQAAFDGVDDHPTGVQGWIIGYLYRNRDKEVFQRDIQEQFSIRRSTVTGILQLMEKNGLITRSSVEQDARLKKLELTPRAIELHERIERSVRQVEERISHCLTPEEKETFIQLCEKIRADLSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKU6</accession>
    <name>R6ZKU6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">8-oxoguanine DNA glycosylase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000369">
        <property type="protein sequence ID" value="CDD31062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31062">
        <property type="protein sequence ID" value="CDD31062"/>
        <property type="gene ID" value="BN815_02215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008534">
        <property type="term" value="F:oxidized purine nucleobase lesion DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1670.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023170">
        <property type="entry name" value="HhH_base_excis_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012904">
        <property type="entry name" value="OGG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07934">
        <property type="entry name" value="OGG_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="126"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="32814" checksum="E391DA8209CB4DF3" modified="2013-07-24" version="1">MKEEKEGLLPGGIRSPYPFDAAETLDCGQAFRWVALPGEAEASLWEGVAFGKVLRVEQRGEQVWLGCSPEDYEHTWRAYFDLGEDYAPKREALAAMSPALAEAVAFAPGIRILRQEPWEALCSFIISQNNHIPRIKGIIERLCQRLGAEIPGTAWHAFPTAERLAACSLEDLAPLRAGFRAKYLLDAARKVASGQVDLARVAAVPVEEGRRELQTIFGVGPKVAECALLYGFHKTECFPLDVWMKRAMATLLPGRRPEEFGENAGLAQQYLFHYSRMHPELFAEKTAYPPANRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLK9</accession>
    <name>R6ZLK9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00272</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31337">
        <property type="protein sequence ID" value="CDD31337"/>
        <property type="gene ID" value="BN815_00272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="PTHR42961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="30205" checksum="7EAF84C836E74988" modified="2013-07-24" version="1">MSENCTHDCSSCGENCPSRQQPQSFLEKTNDLSHVKKVIGVVSGKGGVGKSLVTSLLATSLRRRGSDVAVLDADITGPSIPKCFGMKQRALSDENGIYPVATKTGIKVMSINLLLEEETSPVVWRGPVIAGAIKQFWTDVIWGNVDYMFVDMPPGTGDAPLTVFQSLPLDGILIVTSPQELVGMIVSKAVEMAKMMDVPVLGLVENMSYVKCPDCGREIHVFGESHIDEVAAKYGLKVLGKLPMEPKLAAACDRGAIELFEGDWLEPTADLIEGLPQKEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLP7</accession>
    <name>R6ZLP7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Acetolactate synthase small subunit</fullName>
            <shortName evidence="8">AHAS</shortName>
            <shortName evidence="8">ALS</shortName>
            <ecNumber evidence="8">2.2.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acetohydroxy-acid synthase small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00313</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 2 pyruvate molecules into acetolactate in the first common step of the biosynthetic pathway of the branched-amino acids such as leucine, isoleucine, and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Dimer of large and small chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the acetolactate synthase small subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31382">
        <property type="protein sequence ID" value="CDD31382"/>
        <property type="gene ID" value="BN815_00313"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990610">
        <property type="term" value="F:acetolactate synthase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04878">
        <property type="entry name" value="ACT_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004789">
        <property type="entry name" value="Acetalactate_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019455">
        <property type="entry name" value="Acetolactate_synth_ssu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039557">
        <property type="entry name" value="AHAS_ACT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30239">
        <property type="entry name" value="PTHR30239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10369">
        <property type="entry name" value="ALS_ss_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00119">
        <property type="entry name" value="acolac_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="4"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU368092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="156" mass="16974" checksum="F44FA86E0D4719DB" modified="2013-07-24" version="1">MKYTLSVLVENQPGVLSKVVSLFARRGYNIDSLAVGTTEDPTMSRMTIVGQGDDHILEQVEKQLNKVIPVIKVRSLGPDAVTAELLLVKVACDPATLGKVNQIAALMKAEVADVSKSMVTLKYAGEHERCETLLDLLRPYGIREIARTGVIALERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUQ1</accession>
    <name>R6XUQ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000042">
        <property type="protein sequence ID" value="CDD27453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27453">
        <property type="protein sequence ID" value="CDD27453"/>
        <property type="gene ID" value="BN815_00630"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="48" mass="5781" checksum="8FD6469527C80896" modified="2013-07-24" version="1">MKLENSINYYYTVLALRLLLERGLISEDEYGKISRYNAEFFKPGREYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV77</accession>
    <name>R6XV77_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Sodium ion-translocating decarboxylase beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00683</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27638">
        <property type="protein sequence ID" value="CDD27638"/>
        <property type="gene ID" value="BN815_00683"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018801">
        <property type="term" value="F:glutaconyl-CoA decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005661">
        <property type="entry name" value="OadB_MmdB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35806">
        <property type="entry name" value="PTHR35806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03977">
        <property type="entry name" value="OAD_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015658">
        <property type="entry name" value="MmdB_OadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01109">
        <property type="entry name" value="Na_pump_decarbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0915">Sodium</keyword>
    <keyword evidence="7" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="210"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="281"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="355"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR015658"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="375" mass="40036" checksum="87E96113E9E57EE8" modified="2013-07-24" version="1">MEFLWEGLLSITWQQVVMYVVGAVLIWLAIKKEYEPTLLLPMGFGAILVNLPSSGVLNQMMEGAGETHGIIQWLFEVGIETSEAFPLLLFIGIGAMIDFGPLLSNPKMFLFGAAAQFGIFLTIVLAALLGFEIKDAASIGIIGAADGPTSILVSQVLGSNYIGPIAVAAYSYMALVPIIQPAAIKLVTTKKERAIKMEYRPNAVTKTTRILFPIMVTFVAGLVAPASVSLVGFLMFGNLIRECGVLNRLSETAQNDLANLITLLLGITIAFSMRADQFVTVQTIMIMALGLVAFIFDTIAGVVFAKILNIFSRTKINPMVGAAGISAFPMSARIVEKMGIAENNQNHLLMHAVGANVSGQIASAVAGGIILGFFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY69</accession>
    <name>R6XY69_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28703">
        <property type="protein sequence ID" value="CDD28703"/>
        <property type="gene ID" value="BN815_00071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424824" evidence="1">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="62" mass="7266" checksum="7D5C404B75C8AF98" modified="2013-07-24" version="1">MKKVWKLFPIFFLLVLLFTGCTPKENKGDETQEQSGAPMIDYEVPDKVKDYDFNYEFVPEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYA2</accession>
    <name>R6XYA2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28738">
        <property type="protein sequence ID" value="CDD28738"/>
        <property type="gene ID" value="BN815_00937"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12547" checksum="33B975024D72FAED" modified="2013-07-24" version="1">MIKNNIAFALRCVGGVVVIGGVSWSLYALLGGGTWFQPFLFFVVSVVLGSIVWGISEIINLHAQQIDIQLRLEEKLRKLVPETPAEEKPVEFCAHCGTQLPPGGKTCPSCHEVNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0L4</accession>
    <name>R6Y0L4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000162">
        <property type="protein sequence ID" value="CDD29553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29553">
        <property type="protein sequence ID" value="CDD29553"/>
        <property type="gene ID" value="BN815_01192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="8960" checksum="925D084DE5942176" modified="2013-07-24" version="1">MGWFWKKKKKPLFGGSIEPSCSYCQHNSGKQGEVVCALRQAPSPEGGACKKYQYDPLQREPRVAPSLRASQFRPEDFQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Z4</accession>
    <name>R6Y0Z4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00034</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27495">
        <property type="protein sequence ID" value="CDD27495"/>
        <property type="gene ID" value="BN815_00034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="246" mass="26956" checksum="72DCBCE083A1A6B9" modified="2013-07-24" version="1">MDTTNLKTRMNTKVQALSEREPGTSQYLALTSNALELIQENLKHQPLSFHLFDMVKSPSGGSTVFSVPGLSGEEAEKELTGIILDYTTPRAYWATSDPVEGMPPTCLSKDSLVSQDGKPCAHCPFNDFGSKDGDSPAKACKESVLLFLLRPGSVFPLLVRVPVTSKKLFLKYATRLISRMTPLSSVVTRITLEKATSREGKPYALFHFDAVQILDQETAAKAKAFGKQFMEFVNAADVEPVFTQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1K9</accession>
    <name>R6Y1K9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Diacylglycerol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_00043</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial diacylglycerol kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27700">
        <property type="protein sequence ID" value="CDD27700"/>
        <property type="gene ID" value="BN815_00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14265">
        <property type="entry name" value="UDPK_IM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000829">
        <property type="entry name" value="DAGK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036945">
        <property type="entry name" value="DAGK_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033717">
        <property type="entry name" value="UDPK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34299">
        <property type="entry name" value="PTHR34299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01219">
        <property type="entry name" value="DAGK_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD27700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="19641" checksum="367B443432A25D37" modified="2013-07-24" version="1">MHNPSPQKKRRLWHSFADAFRGIGCCIKSERNMRIHLVACAYVLFFASQLSLSRGEMACLLLAIGGVMTAETLNTALEKLCDFAQKNLNRYIRVIKDMAAGAVLLSAIAALLVGVVILFRPELWALLWGIVSHPAALGLLALSLAVAAGFVFLGPAWVAERWDALRRRRLDRGRREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1Y4</accession>
    <name>R6Y1Y4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01357</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000191">
        <property type="protein sequence ID" value="CDD30053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30053">
        <property type="protein sequence ID" value="CDD30053"/>
        <property type="gene ID" value="BN815_01357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="2">
        <location>
            <begin position="21"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="3">
        <location>
            <begin position="177"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="420"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="591" mass="68952" checksum="33F74FCDC231CDDB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y256</accession>
    <name>R6Y256_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01393</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M29 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000197">
        <property type="protein sequence ID" value="CDD30148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30148">
        <property type="protein sequence ID" value="CDD30148"/>
        <property type="gene ID" value="BN815_01393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1830.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035097">
        <property type="entry name" value="M29_N-terminal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000787">
        <property type="entry name" value="Peptidase_M29"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02073">
        <property type="entry name" value="Peptidase_M29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00919">
        <property type="entry name" value="THERMOPTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="398" mass="44371" checksum="F5F2B846F553FDEC" modified="2013-07-24" version="1">MDLENMKRKYAYTLARVGLNVQKGQTVLVEAALEGWQFTSIFAEECYKLGAGNVVVNYLDQANLKVAAHYRPDEDVRRVEDWERSMYQKYLDEGACYVRLEGVNPQLMEGVSEKESNAIFAHVDGVRNIMRKASREKHCQWLIAMVPTVEWAEYILDKKGEEALRELWEILLKLCYIDEDNDVVKTWEELRAQKAARGKAVDALKLTKLHYTAGNGTDLTVGLTPWSKFGHEGAPAIPFTPNIPTEEICTTPAKYETNGVVYASRPLVLGGKKIENFGFRFEKGKVVEVLAGAGKEMLEALVATDENAGYLGEAALVEYHSPISMSGLVYYTTLIDENASCHLALGRGLNSSPAGHPDLFNDSTIHIDFMIGTPDMKIVGTTEDGQEVEIFRDGDFAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y269</accession>
    <name>R6Y269_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VTC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01403</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30158">
        <property type="protein sequence ID" value="CDD30158"/>
        <property type="gene ID" value="BN815_01403"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.100.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018966">
        <property type="entry name" value="VTC_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042267">
        <property type="entry name" value="VTC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09359">
        <property type="entry name" value="VTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VTC" evidence="1">
        <location>
            <begin position="34"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="222" mass="24811" checksum="119D3D6E70E4542F" modified="2013-07-24" version="1">MALRHEWKHRIDTAGLLALRARLGAVLQRDPHALGGSYQVRSLYFDNLADKALLEKLESVNHREKFRLRFYNGDLSLLVLEKKTKTNGLCGKAQTPLTVEEARALLEGRHQELGASSPLLGELRRKMDSQGLRPKAIVEYTREPFLYGPGNVRVTLDYNIRTALSPAVFLDPGCVTLPAADAPVILEVKWDAFLPDLVRDLVQLPGTRTSAFSKYAACRLYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2H2</accession>
    <name>R6Y2H2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01501</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30258">
        <property type="protein sequence ID" value="CDD30258"/>
        <property type="gene ID" value="BN815_01501"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026466">
        <property type="entry name" value="Fim_isopep_form_D2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032334">
        <property type="entry name" value="GramPos_pilinBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019931">
        <property type="entry name" value="LPXTG_anchor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041033">
        <property type="entry name" value="Prealbumin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00746">
        <property type="entry name" value="Gram_pos_anchor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16569">
        <property type="entry name" value="GramPos_pilinBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17802">
        <property type="entry name" value="SpaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04226">
        <property type="entry name" value="RrgB_K2N_iso_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0134">Cell wall</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0572">Peptidoglycan-anchor</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0964">Secreted</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424975" evidence="5">
        <location>
            <begin position="27"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="564"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="domain" description="GramPos_pilinBB" evidence="7">
        <location>
            <begin position="227"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="domain" description="SpaA" evidence="8">
        <location>
            <begin position="399"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="domain" description="GRAM_POS_ANCHORING" evidence="6">
        <location>
            <begin position="548"/>
            <end position="585"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="591" mass="62539" checksum="646BF6CE7358D059" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2K7</accession>
    <name>R6Y2K7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Homoserine kinase</fullName>
            <shortName evidence="11">HK</shortName>
            <shortName evidence="11">HSK</shortName>
            <ecNumber evidence="4 11">2.7.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">thrB</name>
        <name evidence="14" type="ORF">BN815_01527</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>ATP + L-homoserine = ADP + H(+) + O-phospho-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:13985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.39"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 4/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the GHMP kinase family. Homoserine kinase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.39" evidence="4 11"/>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30293">
        <property type="protein sequence ID" value="CDD30293"/>
        <property type="gene ID" value="BN815_01527"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004413">
        <property type="term" value="F:homoserine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00384">
        <property type="entry name" value="Homoser_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006203">
        <property type="entry name" value="GHMP_knse_ATP-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000870">
        <property type="entry name" value="Homoserine_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000676">
        <property type="entry name" value="Homoser_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00191">
        <property type="entry name" value="thrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00627">
        <property type="entry name" value="GHMP_KINASES_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 11 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0791">Threonine biosynthesis</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GHMP_kinases_N" evidence="12">
        <location>
            <begin position="76"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="GHMP_kinases_C" evidence="13">
        <location>
            <begin position="219"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="83"/>
            <end position="93"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="32152" checksum="2709E313A2C79B46" modified="2013-07-24" version="1">MIRIDVPATSANLGSGFDSLGIALTMQNRVWMEESDTLEIRCTDGVKVPTDESNLIFWAAQHLYEICGKKLPGLKIIQENNIPMARGLGSSSACIVAGILGANRFMGNPLSHSDLINLAAQIEGHPDNTSPALSGGLVASAMEGKRVYSVSVPVSEKIRFALLIPPFELKTEEARAALPKTYSREDAVYNLSRSGLMTASLFSGNLQNLRVAVQDRIHQPYRSGLIGHYDDVFRMSYELGSLGTYVSGAGPTIIAMIDSENADAFGRNCVTHLEDKGITGWRVEILSAAPQGAQIVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2P2</accession>
    <name>R6Y2P2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01552</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30318">
        <property type="protein sequence ID" value="CDD30318"/>
        <property type="gene ID" value="BN815_01552"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009045">
        <property type="entry name" value="Hedgehog_sig/DD-Pept_Zn-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003709">
        <property type="entry name" value="Pept_M15B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02557">
        <property type="entry name" value="VanY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55166">
        <property type="entry name" value="SSF55166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VanY" evidence="1">
        <location>
            <begin position="82"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="26979" checksum="E07766E926D9B45C" modified="2013-07-24" version="1">MKREEFSLARGFVAFGVAVALVCDAVSGWNQRQFLREAAPANAAPEQDSGQLEEPLLVLVNGENAVPGSWWFLPYLVDDEVVDRRMAEDLSALLEAAESQGVWLWVASGYRSRRRQEDILESAIQERMAQGLTREQARAKALETIAQPGHSEHETGLALDFNDVSQGFQETEAYQWLRQHGAAYGFIQRYQREKEDVTGVKAEPWHFRYVGREHALAMERLGLCLEEYVRWQRALGGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2V2</accession>
    <name>R6Y2V2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01590</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000231">
        <property type="protein sequence ID" value="CDD30363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30363">
        <property type="protein sequence ID" value="CDD30363"/>
        <property type="gene ID" value="BN815_01590"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="7163" checksum="386D0C30ED8F48B8" modified="2013-07-24" version="1">MDEQNRKRSVVQKTVWKGVSFGSVLAMVISYCNWHSVGWAIFHGLLSWVYVIYYVIRYGFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y394</accession>
    <name>R6Y394_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00819</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28325">
        <property type="protein sequence ID" value="CDD28325"/>
        <property type="gene ID" value="BN815_00819"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="1">
        <location>
            <begin position="2"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17702" checksum="8EE06509345D4119" modified="2013-07-24" version="1">MQNIYSMMDRAYEKGVIPYCQEHNIGFVAFSPIASGYLSGKVDPNQTFTGDDVRQWVPQLKKENMLANRPLLEVLSDMAARKHATNAQITLAWMLRKYPHVVPIPGSKNKGRILENLGAWEVELSDGEFQELEDALGRIAIHGQRSDLGNRTEFIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Q1</accession>
    <name>R6Y3Q1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">YihY family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01814</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30603">
        <property type="protein sequence ID" value="CDD30603"/>
        <property type="gene ID" value="BN815_01814"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035875">
        <property type="entry name" value="RNase_BN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00765">
        <property type="entry name" value="yihY_not_rbn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="126"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="173"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="229"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="275"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="300" mass="34071" checksum="D0E3EEF67A28591B" modified="2013-07-24" version="1">MKLFKKHLRWFLERVDRDRLDSTAAHGAFFLLISFLPFVAFLLTLLQQIHFADGVTLIEAALGIFPDSVADYLESLLPSPLHSGGVLPVAVIAAVWSSSMGMLAIIKGLDQIYEVPETRGFVRLRVIAVVYVILFAFVLIVAAALLVFGTSIYRFLLERSSAFLAPILMKFKSLAGFVMLFGFFTLLYTGVPRRRVRLSHNLAGAAFSAAGWVLFSFFFSIFVERFSDFSIYGSLATLVILMFWLFSCMYIMFLGAEVSMWLETSSIRMDVKNLRKKRKKRRARNRRQRSAKTDTTHTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3W2</accession>
    <name>R6Y3W2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01875</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000299">
        <property type="protein sequence ID" value="CDD30668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30668">
        <property type="protein sequence ID" value="CDD30668"/>
        <property type="gene ID" value="BN815_01875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="53" mass="5545" checksum="24BCB7B61721237B" modified="2013-07-24" version="1">MAKPMESKYACIRALSQVVKPVTRATSAGTSACISKVAGFSIEASRLSTGLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4G8</accession>
    <name>R6Y4G8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">N-acetyl-gamma-glutamyl-phosphate reductase</fullName>
            <shortName evidence="5">AGPR</shortName>
            <ecNumber evidence="5">1.2.1.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">N-acetyl-glutamate semialdehyde dehydrogenase</fullName>
            <shortName evidence="5">NAGSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">argC</name>
        <name evidence="8" type="ORF">BN815_02040</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>N-acetyl-L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + N-acetyl-L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.38" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30853">
        <property type="protein sequence ID" value="CDD30853"/>
        <property type="gene ID" value="BN815_02040"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00150">
        <property type="entry name" value="ArgC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023013">
        <property type="entry name" value="AGPR_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000706">
        <property type="entry name" value="AGPR_type-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01850">
        <property type="entry name" value="argC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01224">
        <property type="entry name" value="ARGC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 5" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0521">NADP</keyword>
    <keyword evidence="4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="7">
        <location>
            <begin position="5"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="346" mass="37487" checksum="9AA5075E4999CB7A" modified="2013-07-24" version="1">MEKIRVGVVGATGYAGSEICRLIAGHPQAELAAISSVSFEGMALSQVYPAYNQMIDLVCGTQDQVVEQSDVIFAALPHGLSQDLAAQCDALGKTFIDMGADFRLEDEAAYQEWYGGAYQDKALHEKAVYGLPEFFREKIRGKKVIANPGCYTTAVPLALVPALEAGHIESDGIIADCKSGVTGAGRKPTQGNHYPELNESFTAYKVAAHRHTPEIEQTLSKMVGSPLKVTFVPHLLPINRGILATCYAKLKPGVTEDQLWEAYHARYDGEYFVRLLEKGQVANVKNVRYSNFCDVSLFVDSRTGTFIAISAIDNMVKGAAGQAIQNMNLSFGLEETAGLTLVPPAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4K1</accession>
    <name>R6Y4K1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00181</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30878">
        <property type="protein sequence ID" value="CDD30878"/>
        <property type="gene ID" value="BN815_00181"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="54"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="159"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="18"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="334"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="368"/>
            <end position="375"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="580" mass="62664" checksum="A937C3429BCF4EFE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4M2</accession>
    <name>R6Y4M2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30893">
        <property type="protein sequence ID" value="CDD30893"/>
        <property type="gene ID" value="BN815_02055"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011989">
        <property type="entry name" value="ARM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="11941" checksum="52340B0AB9CF6D6A" modified="2013-07-24" version="1">MSKLEKVEKAIEKGKEAALIKLAQDKDEEVRLAAIAGMGKIGKDDSFNFIVPDMLTNDDPKVRATAAEALGNMDNEHASAHLRYYLEREKDPTVIAAMRNAIAALNKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4R8</accession>
    <name>R6Y4R8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02090</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30928">
        <property type="protein sequence ID" value="CDD30928"/>
        <property type="gene ID" value="BN815_02090"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="189"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32690" checksum="2BA6360135101315" modified="2013-07-24" version="1">MPAGKSQYRKGEYPTFEDYSIYAQRVVLNGEFVQHSHDFDEIVLILSGTGEHLVGQRVYSLKRGDVFVIKGETRHGFRGAENLELVNVMYDPRILLSGEGDLRAVAGFAYLFLVQPAIAQQEEYPYAVFLDEDATETASTLCGFLIRQLEDCAGQYQVAVQYGFKTLAAYLANHYRTREDLSEKLGIFTRAVQYLQYNAARPIKLQEVAEAAAVSQRHLERVFFEVCGLSPMAYLLELRLRHASLLLRGTSKTVAEIAGECGFEDPSYFARVFKRKYGAPPNQCRNAKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y562</accession>
    <name>R6Y562_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02216</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000369">
        <property type="protein sequence ID" value="CDD31063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31063">
        <property type="protein sequence ID" value="CDD31063"/>
        <property type="gene ID" value="BN815_02216"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045706">
        <property type="entry name" value="DUF6062"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19538">
        <property type="entry name" value="DUF6062"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="27360" checksum="A50488ABB5974E94" modified="2013-07-24" version="1">MREDICSIPVNDVFMPKDGCPFCRMRDMLEDRMATYITGAAMMEPDVRVETNRLGFCTEHFNQILARGSRLSVALILESLLATVREEVFPQGKVPAKKIVAAAHARQEHCFICENIEKNTAHLLDSTLKLWQTDEEFRQLYSQQPYICLPHYGMVLEAAMKLPRKVFPLFEQETTRLAKQYAEALNGDVTHFCRMFDYRNAGGDWGNSKDAIERAIRYLTSREPENRQKADEKNRAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5A1</accession>
    <name>R6Y5A1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00202</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31118">
        <property type="protein sequence ID" value="CDD31118"/>
        <property type="gene ID" value="BN815_00202"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="274"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="126"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="299" mass="34484" checksum="23F279E5F6D34072" modified="2013-07-24" version="1">MFYQLKPTFEAVQEKPAEGVPWVEVITQEEMDSQVTQHPYLARSLRHGHSCKAELFDHCAAGALLVPRKEHSPRSGSSFAFLLTTDRLTFVDDTGQIEVLLEQLSYQPGLEAAPGELLLEFLEFLIQEDAAFLQHLETQLDKLEEQLLEQEEPQRFENQLHRCRRTLLKLSAYYAQLDELGDTLAANRNGLFSKKLCRGFELFSHRAGRLHSQTASLREYSLQLHQIYQSKIDLKQNRVMQFLTVVTTVFMPLTLITGWYGMNFHSMPELNAPWAYPAVILVSLAILLAEVLFFRRKKW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5J4</accession>
    <name>R6Y5J4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AP endonuclease family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31213">
        <property type="protein sequence ID" value="CDD31213"/>
        <property type="gene ID" value="BN815_02357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="25"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="31839" checksum="BC20C0574CF9C29F" modified="2013-07-24" version="1">MEYSVSLYSFYSAIQKGELTPLGCVEKAAELGFDAVEAVDFVNFSGTQEEKKAQALELKQAAEKCGLQFSSLAIGADFLNGSDGDQEKEIQRVKDYVDIAALLGAPRMRHDITAGYKGENYRSYESLIPTLAQAVREVADYAASQGVMTMTENHGFFSQDSDRVEKLYMAVDHPNFGLLCDLGNFLCADENPAEAVARIAPYTRYVHGKDFIVKPFYSEDPGEGAFRSRGGNFLRGTIIGHGNVPVKHCLHLLKAAGFDGTISIEFEGMEPCVDAVRIGLANLKKYWSEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5M3</accession>
    <name>R6Y5M3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">UDP-glucose 4-epimerase</fullName>
            <ecNumber evidence="5 8">5.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02387</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>UDP-alpha-D-glucose = UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:22168"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="5.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.2" evidence="5 8"/>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31243">
        <property type="protein sequence ID" value="CDD31243"/>
        <property type="gene ID" value="BN815_02387"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003978">
        <property type="term" value="F:UDP-glucose 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05247">
        <property type="entry name" value="UDP_G4E_1_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005886">
        <property type="entry name" value="UDP_G4E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01179">
        <property type="entry name" value="galE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 8" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="9">
        <location>
            <begin position="2"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="318" mass="35217" checksum="4A3DD90873914F90" modified="2013-07-24" version="1">MEQGHDVVIVDNLCNSKRVAVDRVEELSGKKVTFYQYDVCDEAKMREVFSKESIDAVIHFAGLKAVGESVAIPLRYYDNNLTSTLVLLKVMKEFGVGNFVFSSSATVYGDPASVPIREDFPLSTTNPYGTTKLMIERILTDCANADQNFHPVLLRYFNPVGAHESGKIGEDPNGIPNNLVPYITQTVVGKREKVHVFGNDYPTPDGTGVRDYIHVVDLAKGHAAVLPLFEKGFTGAKVYNLGTGKGYSVLDMIHAFSKAAGKDIPYVIDPRRPGDIPECYADCSKAYEELGWKAEKTLDDMCADSLRWQRMNPNGFED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5X6</accession>
    <name>R6Y5X6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000407">
        <property type="protein sequence ID" value="CDD31348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31348">
        <property type="protein sequence ID" value="CDD31348"/>
        <property type="gene ID" value="BN815_00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025945">
        <property type="entry name" value="DHHW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14286">
        <property type="entry name" value="DHHW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13161" checksum="6392C0F7F742E583" modified="2013-07-24" version="1">MRHAKQYKRGSRGKAAVFFVVLFGFAIFSMLLPLRPTRSEIENRDLTKFPAFSAPALARGDYTQGIDTWFADTFPLRDVFRQLNNWVESLYGIKTVEIVGNVEQGDEIPDAPFTGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y695</accession>
    <name>R6Y695_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PF06135 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00354</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0297 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000423">
        <property type="protein sequence ID" value="CDD31458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31458">
        <property type="protein sequence ID" value="CDD31458"/>
        <property type="gene ID" value="BN815_00354"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009309">
        <property type="entry name" value="IreB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40067">
        <property type="entry name" value="PTHR40067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06135">
        <property type="entry name" value="IreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037258">
        <property type="entry name" value="DUF965_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010888"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9917" checksum="27037D7BCB61270D" modified="2013-07-24" version="1">MPEDYSNNTITFSMEEVREADMKRILLTVYDALKEKGYNPISQIVGYILSEDPTYITTHNNARSLIRRIDRDELLKAMVRSYLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6D6</accession>
    <name>R6Y6D6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">30S ribosomal protein S19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsS</name>
        <name evidence="8" type="ORF">BN815_00369</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6 7">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31493">
        <property type="protein sequence ID" value="CDD31493"/>
        <property type="gene ID" value="BN815_00369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_S15/S19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_S19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005732">
        <property type="entry name" value="Ribosomal_S19_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_S19_S15_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="PTHR11880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="SSF54570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01050">
        <property type="entry name" value="rpsS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="10046" checksum="76DC2F4B96C1870A" modified="2013-07-24" version="1">MSRSLKKGPFVQPVLLKRIQEMNAAGEKKIVKTWSRSSMIFPDFVGHTIAVHDGRKHVPVYITEDMVGHKLGEFAPTRTFKGHAGAKTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6E0</accession>
    <name>R6Y6E0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000149">
        <property type="protein sequence ID" value="CDD29455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29455">
        <property type="protein sequence ID" value="CDD29455"/>
        <property type="gene ID" value="BN815_01164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="130" mass="15871" checksum="BD5655344E4D4D2D" modified="2013-07-24" version="1">MLFQKFQQFMYGRYGGDKFSLFLLVIALVISFAGAFFWPISLVADAIFIYVLFRMFSRNHAARQREYYGFLRFWTPIEKWFTFQRTRFRERNTYKYFRCPQCKQKLRAPRGRGKIQVTCQKCHHVFQTKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y720</accession>
    <name>R6Y720_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome segregation protein SMC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00467</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31763">
        <property type="protein sequence ID" value="CDD31763"/>
        <property type="gene ID" value="BN815_00467"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMC_N" evidence="2">
        <location>
            <begin position="104"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="19"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="211" mass="23676" checksum="E88D365B5A7A2205" modified="2013-07-24" version="1">MKNRIKALGAVNVGAVVEYREVSERYQFLKGQIEDVEKSKAQLLELIQDLTKHMRQQFTERFAQINQNFGQIFRELFGGGAAELSFTDDSDVLTSGIEIKVHPPGKIVTHIESLSGGEKALVAISIYFAIMRVNPPPFCVLDEIEAALDDVNVARFAQYLRRMSRNSQFITITHRRGTMEGSDMLYGVTMQDQGISKLLALRTEEAAEFGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7F8</accession>
    <name>R6Y7F8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29850">
        <property type="protein sequence ID" value="CDD29850"/>
        <property type="gene ID" value="BN815_00107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8201" checksum="7B66CA58ADC22D7D" modified="2013-07-24" version="1">MRKREMTIAGVPLQPIRRGKPAVIREANGCRQTTPVLWVDQLSSTEVTFETQNTVYHLRVMAVLRGKEAHRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7X0</accession>
    <name>R6Y7X0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00619</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27404">
        <property type="protein sequence ID" value="CDD27404"/>
        <property type="gene ID" value="BN815_00619"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="30" mass="3435" checksum="50AFB28CE5084842" modified="2013-07-24" version="1">MKIPVKTQYHGYAFLNRCAYFGEILAPDTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y878</accession>
    <name>R6Y878_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage II sporulation protein E (SpoIIE)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01383</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30125">
        <property type="protein sequence ID" value="CDD30125"/>
        <property type="gene ID" value="BN815_01383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="390" mass="43454" checksum="E6A0934F7E9CA85B" modified="2013-07-24" version="1">MNNLCTDIGYLSLNKWGEQLCGDRVEIVDQGENSTVIVLADGMGSGVKANILSSLTSKIISTMMAANMRLEDCVSTIASTLPVCAVRGVAYSTFTIIHIIENEEAEIIQYDNPLLILIRDGKFVEIPKTGTEIDGKMIYKSKIKLQENDFLFTMSDGTIHAGVGKSLNFGWERKDIISFLEMMYDKTYTAKTYASILLEECNHLYGGHPGDDTTVCVVKVRDRSQVNLMIGPPSDRKDTNKYMSLFFSKEGKHIVCGGTTSTLASEFLHKPMVADLNYLDPEIPPIAKIEGVDLVTEGVITISKVLEYAKDFLSDNASFSQWGYKRDGASLIARMLFEEATDINFFVGRAINPAHQNPNLPINFNIKMRLVEELSECLKQMGKRIKVSYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8K3</accession>
    <name>R6Y8K3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01498</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30255">
        <property type="protein sequence ID" value="CDD30255"/>
        <property type="gene ID" value="BN815_01498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23093" checksum="40C36E62A36FE2F8" modified="2013-07-24" version="1">MKSKTRMGNILLAAGALFLAAALLLTGSNLYETYQAGQASERLSQEVFSRIESQSQEAHSLSQAALAGGEEETPEYLRNPEMEMPVEEIEGNGYIGLLEIPVLGLSLPVMSEWSYPNLKLAPCRYSGSAYTGNFTIAGHNYSTHFGPIGGLNAGDSITFTDMQGNRFAYEVQVVETLEATAVEDMVSEEWDLTLFTCDLSGESRVTVRCLQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8P3</accession>
    <name>R6Y8P3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulfide dehydrogenase (Flavoprotein) subunit SudA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01534</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30300">
        <property type="protein sequence ID" value="CDD30300"/>
        <property type="gene ID" value="BN815_01534"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006004">
        <property type="entry name" value="Glut_synth_NADPH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01316">
        <property type="entry name" value="gltA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fer4_20" evidence="2">
        <location>
            <begin position="19"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="141"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="463" mass="49596" checksum="58CC42DB44A6832F" modified="2013-07-24" version="1">MPNMSLKKNEMPSQAPDVRNKNFLEVALGYTEEQALDEAQRCLHCKNKPCVAGCPVGIHIPDFIAKVAEGDFEAAYQIITQQSSLPAVCGRVCPQETQCEQKCVRGIKGEPVGIGRLERFVADWHNKNVCEAPRKPAPNGHKVAVIGSGPSGLTCAGDLAKKGYAVTVFEALHTAGGVLVYGIPEFRLPKDIVQKEIDGLKALGVDVQTNMVIGRVLSIDELLEQGYEAVFIGSGAGLPRFMNIPGENLKGVYSANEFLTRVNLMKAYQPGSDTPIEHAKRVAVVGGGNVAMDAARCAKRLGAEEVFIVYRRSEKELPARAEEVEHAKEEGIVFHLLNNPTQILGDENGNVKGMECIRMELGEPDASGRRRPVEVPGSEFTLDVDCVIMAIGTSPNPLIKSTTEGLETQKWGGIIVNEETGLTSREGVYAGGDAVTGAATVILAMGAGKTAATAIDQYIQSKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9B8</accession>
    <name>R6Y9B8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Iron-containing alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00051</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the iron-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27899">
        <property type="protein sequence ID" value="CDD27899"/>
        <property type="gene ID" value="BN815_00051"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990362">
        <property type="term" value="F:butanol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08187">
        <property type="entry name" value="BDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044731">
        <property type="entry name" value="BDH-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43633">
        <property type="entry name" value="PTHR43633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00060">
        <property type="entry name" value="ADH_IRON_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="3">
        <location>
            <begin position="9"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="392" mass="42438" checksum="A5C539751412EE18" modified="2013-07-24" version="1">MNDFVFQAPTKVVFGKGVENQVGQLCKEQGATKVLVHFGGQSAKKSGLLDRVYASLDAAGIPYVSLGGVKPNPRLSLVYEGIELCKREGVDFLLPVGGGSVIDSAKAIGYGLANDFDVWDLYDRKNTAKACAPLGAVLTIAAAGSEMSDSSVITKEEGGIKRGYNCDLCRCKFAVMNPELTYTLPAYQTACGAADIMMHVMERYFVTEDTLALTDGMAEALIRTVMENAPIALKEPENYKARAEILWASSLAHNGLMNCGGPKGDWACHQLEHELGGMFDVAHGAGLAAVWGSWARYVCGEKPQRFAQFAHRIFGIPCQGDAKETALKGIEAMEDFYRSIGMPVNIRELGCELTEEQIATLAEKCCFGGRTIGLFKVLGKEDIREIYRMAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9G0</accession>
    <name>R6Y9G0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01733</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30520">
        <property type="protein sequence ID" value="CDD30520"/>
        <property type="gene ID" value="BN815_01733"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425207" evidence="1">
        <location>
            <begin position="27"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="130" mass="14832" checksum="23695EB72F62D79C" modified="2013-07-24" version="1">MKKKALSLLLALGLCALCAGCTQPDALTLDLSHGYGQHTKLIHLNASSSQKAQRLEGFYQVLEDAEPLDKEFSLFTYYPDYLLELNRNGQTTTAYVDVNGQYIDFYYEGEEQLYRSHTTAEEFRQLVHQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA34</accession>
    <name>R6YA34_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4405 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01979</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30775">
        <property type="protein sequence ID" value="CDD30775"/>
        <property type="gene ID" value="BN815_01979"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025517">
        <property type="entry name" value="DUF4405"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14358">
        <property type="entry name" value="DUF4405"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="66"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="111"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="153"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4405" evidence="3">
        <location>
            <begin position="72"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="251" mass="28257" checksum="C2A2507B49E3B4C9" modified="2013-07-24" version="1">MKPKAKVKIAVDVLMTLGMLFLMGYQFWGDVAHEWAGAGMFVLFILHHALNGGWYKSLFRGKYTPFRVFQIVVDALVLLDMLGLMVSGVILSNHVFDFLPILGGMGFARTLHMLASFWGFLLMALHLGLHWNVFLGMARKAPAFQKPSRRRTIVLNLLGGVVALYGIFAFFRRDLPTYLFLQTHFVFFDFTPPGTTPTPFRRTRSSTTPMRRKSLRTAPRSWTSSTTPAPTCRPCSSGTTGTTNLFPLLTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA62</accession>
    <name>R6YA62_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28154">
        <property type="protein sequence ID" value="CDD28154"/>
        <property type="gene ID" value="BN815_00063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="19512" checksum="21AAF4DDF617F7D6" modified="2013-07-24" version="1">MEVKTFDISQLEEAKAALKEAFLRDEYDENYNEWEFAQRVLQSPGYVPSLCLTAWQDGRLVGYNILTEAAIGESRGLALGPLGVRPAYQSQGAGSLLVEESLRRAKAAGYPWVAVLGGSYYGRFGFEPCAPYGITVSEDAFANEHLQILFFQEEAKAQAAGRITYCDAFYDGDGNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAI3</accession>
    <name>R6YAI3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase sigma factor sigma-70 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02092</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30930">
        <property type="protein sequence ID" value="CDD30930"/>
        <property type="gene ID" value="BN815_02092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="23"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="114"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="178" mass="20528" checksum="970385E4057FAAB1" modified="2013-07-24" version="1">MDNGELRLVKLARKGDREAFTQLVVANERMLSRVAMATLKNPDDAADAVQDTVLQAWESLGQLRQARYFKTWVVRILLNKCYRISAQRSLYAHSQLEETLLAGEQPDWDQSLDVASALRAMGEQDRLLLGLFYFDRLSTREIAQALGLSESCVRQRLHRGRKRFQAIYTEKEELCHEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDE3</accession>
    <name>R6YDE3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flagellar basal body rod protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01122</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29304">
        <property type="protein sequence ID" value="CDD29304"/>
        <property type="gene ID" value="BN815_01122"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0966">Cell projection</keyword>
    <keyword evidence="1" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="392" mass="40192" checksum="7617B08F68ABBC50" modified="2013-07-24" version="1">MAVLGARPGLEVPGLAGQVLVAPALLNIGGGVPDGVLGDAQGVGPHIGDKADGAHALHLHALVQLLGGLHGAPGLEAQLAAGLLLQGRGDKGWRGRAVLLALLHGGDQEVLLLQLLKELVGLLLGADLDLAVLVPVKGGGEHGLAGGRGELGVDAPVLLGHKGLDFLLPIYDHPHGHALHPARGKPPADGLGQKGAEGVGFGQKGAEGIAHQPVQDAPGLLGVDQVQVDGPGVGHALLHAGAGDLVKGDAVRGVLVQAQNVGQVPGDGLPLPVRVGGKQHAVGVGGGLFQLFYQLLLAFYNAVFGLEVVLYVHAETRLGQVPHVAHRGHHLVLVAQIFLNGLRLGRRLHNHQFCHLQVDSFSFRPAIPGWIPPAGGPFYNTPPGRGCQINFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE51</accession>
    <name>R6YE51_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pyroglutamyl-peptidase I</fullName>
            <ecNumber evidence="6">3.4.19.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01189</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Release of an N-terminal pyroglutamyl group from a polypeptide, the second amino acid generally not being Pro.</text>
            <dbReference type="EC" id="3.4.19.3"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.3" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29534">
        <property type="protein sequence ID" value="CDD29534"/>
        <property type="gene ID" value="BN815_01189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016920">
        <property type="term" value="F:pyroglutamyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00501">
        <property type="entry name" value="Peptidase_C15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000816">
        <property type="entry name" value="Peptidase_C15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016125">
        <property type="entry name" value="Peptidase_C15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036440">
        <property type="entry name" value="Peptidase_C15-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033694">
        <property type="entry name" value="PGPEP1_Cys_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402">
        <property type="entry name" value="PTHR23402"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01470">
        <property type="entry name" value="Peptidase_C15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015592">
        <property type="entry name" value="Prld-crbxl_pptds"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00706">
        <property type="entry name" value="PYROGLUPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53182">
        <property type="entry name" value="SSF53182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01334">
        <property type="entry name" value="PYRASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0788">Thiol protease</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="199" mass="21300" checksum="B427AB7AF185E455" modified="2013-07-24" version="1">MEQKTLLITGFEPFQQETINPSWEAVALLPETIGPWRLEKLRLPVVFGKAADLAIARAQQLCPQAILAVGQAGGRGAVTPELVAINTRDAAIPDNEGNAFQGQPVVPGGGDGYFATAPVRQMVQAAAAQGFPCKLSYTAGAYVCNDLFYRLLHQYRGTGVLVDFIHVPFLPEQAKNGEPSMALADMARALEALILALEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF24</accession>
    <name>R6YF24_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GroES-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00538</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27201">
        <property type="protein sequence ID" value="CDD27201"/>
        <property type="gene ID" value="BN815_00538"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="4">
        <location>
            <begin position="8"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="38082" checksum="FAFFAB0FBE6C1833" modified="2013-07-24" version="1">MKAAVLHGNEDIRYEEFPTPETLPGTVKVRVRATGICGSDVPRVLHHGAHFYPVVLGHEFSGDVVEVGEGVTSVQVGDTVSGAPLLPCMKCDDCQQGNFSLCKHYSFIGSRQQGSFAEYVVMPAQNAIQYDPSIPYEQAAMFEPSTVALHGLLCNGYQGGGYVAILGCGTIGIFTLQWAKIFGSKKIVAFDIDEGRLALAKRMGADEAINTGEEGYMERAKALTGGHGFDYVFEAAGNPVTMHMAFEAAANKARVCFIGTPHKDMSFTPAQWELMNRKEFLLTGSWMSYSAPFPGKEWTLTAHYFATGQLKFDPAFIYKTYPMSQAAEAFAEFYHPEQVHGKIMLVNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFI3</accession>
    <name>R6YFI3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">V-type ATP synthase subunit I</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01363</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the V-ATPase 116 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30079">
        <property type="protein sequence ID" value="CDD30079"/>
        <property type="gene ID" value="BN815_01363"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033179">
        <property type="term" value="C:proton-transporting V-type ATPase, V0 domain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002490">
        <property type="entry name" value="V-ATPase_116kDa_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11629">
        <property type="entry name" value="PTHR11629"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01496">
        <property type="entry name" value="V_ATPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="364"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="407"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="458"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="491"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="522"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="558"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="598"/>
            <end position="619"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="671" mass="73842" checksum="A2598D193FC6EA72" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFS0</accession>
    <name>R6YFS0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000202">
        <property type="protein sequence ID" value="CDD30179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30179">
        <property type="protein sequence ID" value="CDD30179"/>
        <property type="gene ID" value="BN815_01422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="239"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="239"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="261" mass="29929" checksum="D5C2145B8C3810FE" modified="2013-07-24" version="1">MDLKAFELIETGLQEELAKQGFSQAQPLEDEAGKLVMFSAADVAYGLLYDVKHQRFELRSTTLKEDGQPGAWRSLSLWLFDEKEGTKADAESILNDFLEVVRGPKRVAVVQQKRRGKEGERSVDPLFFVNRLVNIFPELRDELNEEKIVYGQVRYVTFIKAHVVPRCEDLAQKYPDSDPMKKLCSLFDDMYKNGDLDTRSIVTISLLNSLSDSAFQVFTQRVGEELQKDLKFTRKLKGKKIKPEKKKKKKKVVAKPLSNDH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFU6</accession>
    <name>R6YFU6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Uridylate kinase</fullName>
            <shortName evidence="6">UK</shortName>
            <ecNumber evidence="6">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Uridine monophosphate kinase</fullName>
            <shortName evidence="6">UMP kinase</shortName>
            <shortName evidence="6">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrH</name>
        <name evidence="8" type="ORF">BN815_01452</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + UMP = ADP + UDP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Allosterically activated by GTP. Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the UMP kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30209">
        <property type="protein sequence ID" value="CDD30209"/>
        <property type="gene ID" value="BN815_01452"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04254">
        <property type="entry name" value="AAK_UMPK-PyrH-Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_B">
        <property type="entry name" value="PyrH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015963">
        <property type="entry name" value="Uridylate_kinase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02075">
        <property type="entry name" value="pyrH_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 6" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Involved in allosteric activation by GTP" evidence="6">
        <location>
            <begin position="19"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="11"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="132"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>UMP</name>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="25208" checksum="17419F8D177563F6" modified="2013-07-24" version="1">MAPKYKRVLLKLSGESLAGKAGHGIDFDTVLAICKPVKELVDMGVEVAIVVGGGNFWRGRSSGSMDRTRADHMGMLATVINALGVADGLEQLGLDVRVQTAIAMQEVAEPYIRNRAVRHLEKGRVVVFGCGTGNPFFSTDTGAALRAAEIEADVILKATMVDGVYDSDPKKNPNAKKYDTLSYMDVLNQNLGVMDMTAASFCKDRNIPFLVFSIEDPENIVRAVSGEKVGTLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFZ3</accession>
    <name>R6YFZ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00112</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30264">
        <property type="protein sequence ID" value="CDD30264"/>
        <property type="gene ID" value="BN815_00112"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="343" mass="35759" checksum="803632F98091F642" modified="2013-07-24" version="1">MADVLILLGLGVQKQVLGIALHQPVDRGEGAGALLVGVADAPQPGVVDVGVAHHGDIDLFLHRGQGFLDEGHRLPAGAGEGLPADAAGVHQIPGLGGQVQNAGLVGAVIGQDAVGLQQAGKPIVEAVGVFVQQRQGGTGDFVLHRVGRLLVCQAGPQAELQAQLPLPRQGRFLVVLVHRLPGLPVDVEQAFKALGGAAVGGAKAETPPHAVRQAGGQLHLRAQPQPAIVALPVIPHLHLARIARGGLGAQSAAVLRRIKGPDGHQRLPALLPQAGGGPAEPLVIVKTEWHTFPLPKRIDTVFPAPSREACPSGKLGESYQHYNERKSCFQQKFFKDAGFFAKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFZ5</accession>
    <name>R6YFZ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DpnD/PcfM-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00030</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27486">
        <property type="protein sequence ID" value="CDD27486"/>
        <property type="gene ID" value="BN815_00030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025575">
        <property type="entry name" value="DpnD/PcfM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14207">
        <property type="entry name" value="DpnD-PcfM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7415" checksum="99A7EC865AFF4E76" modified="2013-07-24" version="1">MWWNVTIRETLVRVVAVEAEDAYAAEDAVWSRYRAGEIVLEAEDFSDVELEVKEAGELSPRPFSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG57</accession>
    <name>R6YG57_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative acetyl xylan esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01573</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30339">
        <property type="protein sequence ID" value="CDD30339"/>
        <property type="gene ID" value="BN815_01573"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="343" mass="37228" checksum="C8C7161FAEE65140" modified="2013-07-24" version="1">MKIPQNLPRFSDYTREEALRLLLEKEYGCPPPQPDTLEFHVVRREEDAFAGKAVHATVEAWATFQGRGFSFPFHLVCPKAGQPVPGVVLLNFTPAVPDPYLPSEELCDLGLAVASFHCGDVSPDNGDFTSKAGGLFQVDRSLPTAPGKLALWAWGASVVREYLAACPEIDQKAVAVAGHSRLGKTALLAGALDKRFQFVFANESGCSGAALYRGKQGETAADIQRVFPYWFSPSFASCTGDPEQLPFDQHFLLSPIAPRKLYVSSAAEDLWSDPAAEFLGCLAASPAFEAAGVPGLVGAGEEPQLGQACHQGNIGYHLRAGKHFLSREDWCQFAAYLFLHREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGS7</accession>
    <name>R6YGS7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Cysteine synthase</fullName>
            <ecNumber evidence="5 11">2.5.1.47</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_01762</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>hydrogen sulfide + O-acetyl-L-serine = acetate + L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:14829"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.5.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.47" evidence="5 11"/>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30549">
        <property type="protein sequence ID" value="CDD30549"/>
        <property type="gene ID" value="BN815_01762"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005856">
        <property type="entry name" value="Cys_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005859">
        <property type="entry name" value="CysK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01139">
        <property type="entry name" value="cysK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01136">
        <property type="entry name" value="cysKM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0198">Cysteine biosynthesis</keyword>
    <keyword evidence="7 9 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PALP" evidence="12">
        <location>
            <begin position="8"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="9">
        <location>
            <begin position="181"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="269"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="10">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="310" mass="32268" checksum="909BE847E9757799" modified="2013-07-24" version="1">MEQIVKDITGLVGGTPLLEVARFGQARGLSARLLCKLEYLNPTGSVKDRAALWMLQAAEREGRLAPGATIIEPTSGNTGIGLAAIGASRGYRVILTMPETMSRERRDLLKAYGAQIVLTPGDKGMDGAMQKAAELAASLPGSFIPGQFENPHNAQAHYESTGPELWEQAGGVLDAFVAGIGTGGTLTGTGRFLREKNPDIALVGVEPAGSPVLTQGKAGPHGLQGIGAGFVPQVLDTGLYDEVLPCTEEDAYAAARELARTEGILVGISSGAALWAACQVAARPAYQGKTVAVLLPDTGDRYLSTPLFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGY6</accession>
    <name>R6YGY6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Predicted dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01830</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30619">
        <property type="protein sequence ID" value="CDD30619"/>
        <property type="gene ID" value="BN815_01830"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="5"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="Fer2_BFD" evidence="2">
        <location>
            <begin position="397"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="478" mass="50902" checksum="EC146D7BA3A758A0" modified="2013-07-24" version="1">MKQYDAIVVGAGVVGAAVARELSRRKGSFLVVERALDVCEGTSKANSAIVHAGFDAEPGTWKAKMNVAGNQSMDTLSQELDIPFRRVGAFVVCFAKEELPKLRELYDRGVANGVPDMELLTGEQARALEPNLSEEVQGALLAHTSGIVCPFELTLGLAESAAKNGVEFSFDTQVTGLERAGEGWVVHTSQGDFAARAVVNAAGVFADEIHNWVCEDKLHITPRRGEYCLLDHTAGAHVSRTVFQLPGKYGKGVLVSPTVHGNLLLGPTAKDIGGKEDTATTAPGLQEVLEKSALGVKNIPTRQVITSFSGLRAHEDGDDFVLGESAPGFFDAAGIESPGLSSAPAIGAYLAGLIGEKLGLPENPDFDPIRRGVPHVKDLPVAERAALLQKDPAYGQIICRCEEVSYGEIRDAIHGILGAKTLDGVKRRTRAGMGRCQAGFCSPRVMDLLSQELGLDLTDIRKSGKEAQIVLEKTRGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH32</accession>
    <name>R6YH32_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alanine--tRNA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01881</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000300">
        <property type="protein sequence ID" value="CDD30674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30674">
        <property type="protein sequence ID" value="CDD30674"/>
        <property type="gene ID" value="BN815_01881"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018165">
        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003156">
        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II_ALA" evidence="3">
        <location>
            <begin position="1"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="153"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="31747" checksum="3EC362CE1C70DB7D" modified="2013-07-24" version="1">MEQAGQLVNERHVRFDFTHFSALTPEELLQVENLVNQEILKAVPVSVQEMGIEEARLSGAMALFGEKYGDVVRVVSVEDGFSKELCGGTHMDNTARLGLFKILSESSVASGVRRIEGVTAMGVLDLLSVQMATLRDSARAMKVINPMELPLHAQQMMAQLKEKDKEIESLNAKLAQNRLDGVFQNAQEVDGVKVVFALLSGTGSDALRALCDKAKERPEAIVAVFAGVSGGKATLAAVCSKEAQQKGLKAGVLVKEVAQLCGGNGGGRPDFAMAGAKDQSKLDDALAAVPELVKKQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH35</accession>
    <name>R6YH35_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase</fullName>
            <ecNumber evidence="2">2.7.6.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01884</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000303">
        <property type="protein sequence ID" value="CDD30679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30679">
        <property type="protein sequence ID" value="CDD30679"/>
        <property type="gene ID" value="BN815_01884"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00483">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000550">
        <property type="entry name" value="Hppk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01288">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="SSF55083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01498">
        <property type="entry name" value="folK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPPK" evidence="8">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="158" mass="17800" checksum="032722CFFD1038C8" modified="2013-07-24" version="1">MQVVLGLGTNLGDREANLARALDALERLEGTQIVKLSNLYETEPFDVISQQEDYLNCCVLLETSLKPQRLLEHCLEIEQSLGRVRLEYHGARTMDIDILLCEGFSSDTPQLTVPHPHIRERAFVLVPLSDLFPLHSAFGYAFHEAYEAVDKSGVALYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHF8</accession>
    <name>R6YHF8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Conserved domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02011</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30824">
        <property type="protein sequence ID" value="CDD30824"/>
        <property type="gene ID" value="BN815_02011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="32871" checksum="0920933FF74C68E1" modified="2013-07-24" version="1">MAELQLAAFLPNLVEGEVHDPAEFIALGVHVALALGAGHLHHDAGGLPHLGAGPGAQQHQGVVFQGEAFLHLGSQSRVGVEELGDAAHNLALVVHPEPVGLLSRLDLHVGAELVNGLAGQLAARHRHGLDEVPLEGAKAAALQQVRHVLHPQVDAQVRLVRAELLHGLEVGDAGEGRLGGDVVGAVLGEDGRQHLLDDGEHVLLPGKGHLHIQLVELAGGAVAAGVLVPEAGGNLEVLVKAGGHQQLLELLGRLGQGVELPRVLAGGHQVVPGALGGGGGEDGGGDFQKALVLHGPAQGGDHLAAQDDVPLYLGVAQIQIAVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHI6</accession>
    <name>R6YHI6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000074">
        <property type="protein sequence ID" value="CDD27986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27986">
        <property type="protein sequence ID" value="CDD27986"/>
        <property type="gene ID" value="BN815_00738"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="11"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="17567" checksum="A341E49975ADCC73" modified="2013-07-24" version="1">MNENPLFETAKCTQLGILVHDIEKSSQAYAAFLGVPVPPVQMTGVYEDAHTTYLGQPTKARCKQAFFYYGDLEVELLEPDHEPSVWRQALDENGEGLHHVAFRVQGMDEMIRRGESQGMKLLQRGRWATGHYAYLDATESLHVIIELLENGQFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHL4</accession>
    <name>R6YHL4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA 2',3'-cyclic phosphodiesterase</fullName>
            <shortName evidence="1">RNA 2',3'-CPDase</shortName>
            <ecNumber evidence="1">3.1.4.58</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + H2O = a 3'-end 2'-phospho-ribonucleotide-RNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11828"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="Rhea" id="RHEA-COMP:17353"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:173113"/>
            <dbReference type="EC" id="3.1.4.58"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the 2H phosphoesterase superfamily. ThpR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.58" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30894">
        <property type="protein sequence ID" value="CDD30894"/>
        <property type="gene ID" value="BN815_02056"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004113">
        <property type="term" value="F:2',3'-cyclic-nucleotide 3'-phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008664">
        <property type="term" value="F:2'-5'-RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01940">
        <property type="entry name" value="RNA_CPDase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004175">
        <property type="entry name" value="RNA_CPDase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35561">
        <property type="entry name" value="PTHR35561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02258">
        <property type="entry name" value="2_5_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="HXTX 1" evidence="1">
        <location>
            <begin position="40"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="HXTX 2" evidence="1">
        <location>
            <begin position="122"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="19344" checksum="9E42A03E943FF5D5" modified="2013-07-24" version="1">MRLFFALGFSPATRQAIAQVQQRLRRAAPTARCPAEGNLHLTLAFLGEVPPARLEDATAALEALSPRRLALRLSQIGQFPQEGGLWWLGPEPCPELSALREELIFQLERRGLWYQPGEFRPHVTLARKVSFPGEAPGVEALLPQPLAAPCGRVSLVRSQLTAAGAHYEEVAGKNPPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI13</accession>
    <name>R6YI13_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Glycoside hydrolase family 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02183</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="6">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the glycosyl hydrolase 4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31029">
        <property type="protein sequence ID" value="CDD31029"/>
        <property type="gene ID" value="BN815_02183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001088">
        <property type="entry name" value="Glyco_hydro_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022616">
        <property type="entry name" value="Glyco_hydro_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015955">
        <property type="entry name" value="Lactate_DH/Glyco_Ohase_4_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32092">
        <property type="entry name" value="PTHR32092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02056">
        <property type="entry name" value="Glyco_hydro_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11975">
        <property type="entry name" value="Glyco_hydro_4C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00732">
        <property type="entry name" value="GLHYDRLASE4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56327">
        <property type="entry name" value="SSF56327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="3 6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0464">Manganese</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_4C" evidence="7">
        <location>
            <begin position="200"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU361152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF11975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="441" mass="49849" checksum="3A7AFCF2623A8F8B" modified="2013-07-24" version="1">MLKITFMGAGSTVFARNVLGDVMCTPALRECEIALYDIDGQRLDESYRILSTINQNINEGRAVLKTYLGVENRKEALRGAKFVVNAIQVGFYEPCTVIDFEIPKKYGLRQTIADTLGIGGIMRALRTIPVLEDFARDMEEVCPDALFLNYTNPMAMLSGYMQRYTGVQTVGLCHSVQTCSQHLLESLGMEDKLEGRKELIAGINHMAWLLSIQDKDGNDLYPEIKKRAKEKNAAEKHGDMVRFDYIDKLGYYCTESSEHNAEYNCFYIKKNYPELIERFNIPLDEYPRRCVNQIKGWKEMSEKLLSDTELSHERSKEYASYIMESVITGAPLQIGGNVLNTGHLIEDFPEQACVEVPCLVNGTGVHPTYVGHLPPVLAAMNMTNINTQLLTIEAARTRKKEDILRAVMLEPHTAAELSIDDMAKMIDELIEAHGEYMAMYH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIG6</accession>
    <name>R6YIG6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02338</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31194">
        <property type="protein sequence ID" value="CDD31194"/>
        <property type="gene ID" value="BN815_02338"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="54"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="22623" checksum="1DF0014E0B7E05E4" modified="2013-07-24" version="1">MENPYKEEFRAIFQQHVTRRGGDQLLEWLENTDFYTAPASTKFHCACEFGLVMHSLNVYKVLREKYFEEGDSEESFALCGLLHDVCKAQFYKVATRNVKNDETGQWEKRPYYSVEDAFPYGHGEKSVYLIERFVRLKPAEAIAIRWHMGGFDEAVKGGSFAISAAYDRYPLAVKLHLSDLEATYLREHGTSEIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ29</accession>
    <name>R6YJ29_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">DNA replication and repair protein RecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recF</name>
        <name evidence="10" type="ORF">BN815_00861</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the RecF family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28516">
        <property type="protein sequence ID" value="CDD28516"/>
        <property type="gene ID" value="BN815_00861"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1050.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00365">
        <property type="entry name" value="RecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001238">
        <property type="entry name" value="DNA-binding_RecF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018078">
        <property type="entry name" value="DNA-binding_RecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042174">
        <property type="entry name" value="RecF_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32182:SF0">
        <property type="entry name" value="PTHR32182:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00611">
        <property type="entry name" value="recf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00617">
        <property type="entry name" value="RECF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00618">
        <property type="entry name" value="RECF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="7 8" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="SMC_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="30"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="381" mass="42188" checksum="6FE5E3DA6EA3D83E" modified="2013-07-24" version="1">MVVTRLGCQNFRNLRDGELFPCPGVNVIYGGNAQGKTNLLEGLWLFTGGHSFRGAKDVELPRLDTATGENAPTAALALDFFSEGREQKALLQFENGRRSSVINGVKKKTGSALVGKVCAVIFSPEHLLLVKEGPARRRGFLDGALCQIRPSYAGMLHVYQRALSQRNALLKDIGRFPELRDTLEVWDARLIQLGAAVMEERRRYVEKIAPQAQEIYRGISRGKEELSLSYAPSPRLPEGSSQQDWIELFKTELRRTEASDVRSGFTSVGPHRDDLEITLGGLSARMYGSQGQQRSAVLALKLAEAQALSQLTGETPIVLLDDVMSELDQSRQDYLLNHLHGRQVFITCCSPETVSLQETGMRFRVEAGEVFPEEVERAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJB2</accession>
    <name>R6YJB2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Imidazoleglycerol-phosphate dehydratase</fullName>
            <shortName evidence="5">IGPD</shortName>
            <ecNumber evidence="5 6">4.2.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hisB</name>
        <name evidence="7" type="ORF">BN815_00906</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:11040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="EC" id="4.2.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the imidazoleglycerol-phosphate dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5 6"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28641">
        <property type="protein sequence ID" value="CDD28641"/>
        <property type="gene ID" value="BN815_00906"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07914">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00076">
        <property type="entry name" value="HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="PTHR23133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00954">
        <property type="entry name" value="IGP_DEHYDRATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="21439" checksum="F63185E1445CFF47" modified="2013-07-24" version="1">MERYASMHRKTNETEVTLELCLDGGERAISTGVGFFDHMLSAFAVHGNFGLKVKTVGDWEVDCHHTIEDTGIVLGKAFAEALPTKRGIRRFGHAYIPMDEALAFAAADISGRPFLVFSGEFPQERVGDYDTCMTEEFFRAFAANAGITLHLRCEYGKNSHHMIEALFKAAAHALRDALSQEEDPNLLLSSKGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJM6</accession>
    <name>R6YJM6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 9">Acyl carrier protein</fullName>
            <shortName evidence="7">ACP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">acpP</name>
        <name evidence="11" type="ORF">BN815_00947</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 9">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 9">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="7">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.</text>
    </comment>
    <comment type="PTM">
        <text evidence="9">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28761">
        <property type="protein sequence ID" value="CDD28761"/>
        <property type="gene ID" value="BN815_00947"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01217">
        <property type="entry name" value="Acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="Acyl_carrier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="PTHR20863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00517">
        <property type="entry name" value="acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="4 7" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="2 7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1 7 8" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="3 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="10">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="7 8">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="8518" checksum="D4C9C8D6D8CA5FE3" modified="2013-07-24" version="1">MVFEKVKAILSEQFDVEEDSITAETTLADDLGADSLDVVDLLMSIEDEFEVEIPDEEVENIKTVGALVEYIEGHTNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJU8</accession>
    <name>R6YJU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphodiesterase MJ0936 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31689">
        <property type="protein sequence ID" value="CDD31689"/>
        <property type="gene ID" value="BN815_00445"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="2">
        <location>
            <begin position="1"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="321" mass="36169" checksum="DC8172AA18ECE032" modified="2013-07-24" version="1">MLYAVIADIHGNYPALRAVLEDARKAGAQQYLVLGDFLTDWPFTREVLETLASLENAVFVSGNREWYLDTLNPAHRHREQFAALFLTREAMGERALSWVRGLPKSTRLSTPDGVGSLFLEHIPPVGVGESGGKSPASGELDERFPTRDASHQEVAQYVRESFLKLPHLPEVLQRVNAPVYLHGHSHLQYAVEVGGTLFLNPGSCGLPLDHQPGAPYTLLRFESGRFQVEERRVPYDVEETIAGARNSPAYQQAAGWYQLNSWQLRTARDCNRVFFRFLQEEQRRSSPQTDQEHNLAFHKALALAQAACQQRKPARDLPRTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK62</accession>
    <name>R6YK62_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD hydrolase family IIA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01006</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28931">
        <property type="protein sequence ID" value="CDD28931"/>
        <property type="gene ID" value="BN815_01006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="54" mass="5660" checksum="8C33644AB5B617FC" modified="2013-07-24" version="1">MVGDRLYTDIAVAAGTEVTSILVMSGETTPQLLAESPTQPDLVVQDLGELTSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKC6</accession>
    <name>R6YKC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000116">
        <property type="protein sequence ID" value="CDD28991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28991">
        <property type="protein sequence ID" value="CDD28991"/>
        <property type="gene ID" value="BN815_01014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="19416" checksum="22D99399DC0D167F" modified="2013-07-24" version="1">MAKKVLVVVDMQNDFITGSLGTPEAQAIVPRVVEKIQGFGGTVLYTQDTHGADYLQTQEGRNLPVEHCLKGTWGWQLEPRVEAVRDSTPIEKPTFGSKGLAEVLKARHTYEGPLEEIQLVGLCTDICVISNALLLKAFLPEVKLTVDASCCAGVTPESHQRALEAMKACQIAVVNGEQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKS0</accession>
    <name>R6YKS0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific recombinase phage integrase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01079</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000128">
        <property type="protein sequence ID" value="CDD29176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29176">
        <property type="protein sequence ID" value="CDD29176"/>
        <property type="gene ID" value="BN815_01079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9046" checksum="315C54A51F26FC77" modified="2013-07-24" version="1">MTPSTFTWRFKLILKKHGLPLDLNVHSLRHTAASLMISGGADVATVSGILGHAQVSTTLDIYTHAFDEKKREVSAEMQGRVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLV0</accession>
    <name>R6YLV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA (guanine-N(7)-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA (guanine(46)-N(7))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(m7G46)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trmB</name>
        <name evidence="2" type="ORF">BN815_01183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine(46) in tRNA + S-adenosyl-L-methionine = N(7)-methylguanosine(46) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42708"/>
            <dbReference type="Rhea" id="RHEA-COMP:10188"/>
            <dbReference type="Rhea" id="RHEA-COMP:10189"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74480"/>
            <dbReference type="EC" id="2.1.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; N(7)-methylguanine-tRNA biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.33" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29516">
        <property type="protein sequence ID" value="CDD29516"/>
        <property type="gene ID" value="BN815_01183"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00989"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008176">
        <property type="term" value="F:tRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01057">
        <property type="entry name" value="tRNA_methyltr_TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003358">
        <property type="entry name" value="tRNA_(Gua-N-7)_MeTrfase_Trmb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23417">
        <property type="entry name" value="PTHR23417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02390">
        <property type="entry name" value="Methyltransf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00091">
        <property type="entry name" value="TIGR00091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51625">
        <property type="entry name" value="SAM_MT_TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="25072" checksum="1E681C82C4DAE8AC" modified="2013-07-24" version="1">MRIRRKTWARPELAACPYYIPQPEAQKGRWQEVFSSPRPIHLDLGCGKCVFLAQAAHTHRDVNFIGIDISLDILGVARRNIQEAYGEEQPDNVALCAYNIERLPQLFAPGEQVERIYINFCNPWPAAGHHKRRLTHTRQLLSYKPLLVPGGEIWFKTDNDDLYLATRRYFTEAGFEIFFDTKDLHRENDPENLLTEHEVRFTQEGIPTKALRARLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMG1</accession>
    <name>R6YMG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000177">
        <property type="protein sequence ID" value="CDD29811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29811">
        <property type="protein sequence ID" value="CDD29811"/>
        <property type="gene ID" value="BN815_01270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="38" mass="4118" checksum="22879CD93AFFF3CB" modified="2013-07-24" version="1">MPVSTLESTDLSVNQTTLNALTGVTFPAEVLQTAYLYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNJ8</accession>
    <name>R6YNJ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamate racemase</fullName>
            <ecNumber evidence="2 7">5.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murI</name>
        <name evidence="8" type="ORF">BN815_01424</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Provides the (R)-glutamate required for cell wall biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate = D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:12813"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="EC" id="5.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.3" evidence="2 7"/>
    <dbReference type="EMBL" id="CBGU010000202">
        <property type="protein sequence ID" value="CDD30181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30181">
        <property type="protein sequence ID" value="CDD30181"/>
        <property type="gene ID" value="BN815_01424"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008881">
        <property type="term" value="F:glutamate racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00258">
        <property type="entry name" value="Glu_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033134">
        <property type="entry name" value="Asp/Glu_racemase_AS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004391">
        <property type="entry name" value="Glu_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF2">
        <property type="entry name" value="PTHR21198:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00067">
        <property type="entry name" value="glut_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00924">
        <property type="entry name" value="ASP_GLU_RACEMASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="10"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="42"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="186"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="30234" checksum="4021B876F651B49A" modified="2013-07-24" version="1">MDNRPIGVFDSGLGGLTAVKQLEQVLPGESLVYFGDTGRVPYGSRGKDTILRYARQDMDFLLAQNVKAVLAACGTVSSVARSVGEALSVPYIDVIGPSARAAAAATKNGKIGVIGTAATIASDSYRSALLRINHKLEVYPQACPLFVSLVESGFVSPQDEVTRLVAERYLAPVRAAGVDTLILGCTHYPIIAPTVAGVMGRGVTLIDSGREAALALAQALKERDLLCEEGHRRQASYFVTDTPENFLNVAELFLGHSVEGRTQRIDIESYPAETHGRREREC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNK5</accession>
    <name>R6YNK5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01434</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30191">
        <property type="protein sequence ID" value="CDD30191"/>
        <property type="gene ID" value="BN815_01434"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="80"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="243"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="76"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="29826" checksum="126325FFCF4F51D4" modified="2013-07-24" version="1">MRVSEILKKCLRNKNFILGSCMVGLMVLIMVVGFFYMPYDPDVMDTEHELQFFSAAHPLGTDQFGRDILSRIMEGTRVSFLVGALTVVFGLLVGGAVGAVAGYYGGKIDEVIMKLIDTQMAFPGVLLALMLIAVFGNSLQNLIFALGIMSIPRFARITRSGFIKYRDAEFIKAARSRGAGDGRIIFLHILPNIVPELIVTSSLGFAGAVMSEAGLSYLGLGIQPPTPSFGKMLSEAQAEILQAGWYVLVPAAAITLLVMGFNLIGDALQEVTQHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNL2</accession>
    <name>R6YNL2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerol-3-phosphate cytidylyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30201">
        <property type="protein sequence ID" value="CDD30201"/>
        <property type="gene ID" value="BN815_01444"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047348">
        <property type="term" value="F:glycerol-3-phosphate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019350">
        <property type="term" value="P:teichoic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006409">
        <property type="entry name" value="G3P_cytidylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01518">
        <property type="entry name" value="g3p_cytidyltrns"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CTP_transf_like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="15623" checksum="75113FB9933BC651" modified="2013-07-24" version="1">MKRVITYGTFDLLHYGHINLLRRAKQYGDYLIVALSTDEFNWNEKQKKCYFSYEKRKQLLEAIRYVDLVIPEESWEQKRSDIREYHVDTFVMGDDWQGKFDFLQDLCQVVYLPRTPEISTTQIKKDLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNU9</accession>
    <name>R6YNU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30296">
        <property type="protein sequence ID" value="CDD30296"/>
        <property type="gene ID" value="BN815_01530"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13508">
        <property type="entry name" value="Acetyltransf_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="141"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="30706" checksum="CAD734E84AE8331B" modified="2013-07-24" version="1">MDVTCEALYTLYGECFPCYPLSREWFFSLLALEQGKVFTRWEGGALAGAAVLHGDSLPLLCVGERFRGRGLGSQLLAQAEEHAKSQGHSQVVLGQGPHYLFQGVPEENPGAVEFFQKRGYQAAWSSVNMRLDLAGYDPGQVDIPPVPEGVAFRLLETGEEAALLAAVEDAQPAWLEFYQGCPSPILVAVEQGQLVGFAMVPPEGGRFLGDVEKPGSLECVGVVKSHRNRGIGMGMVLAGIRWLKEQGCGSIELRYVALEDWYEKVGFCTFQRMWMGEKNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP44</accession>
    <name>R6YP44_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30376">
        <property type="protein sequence ID" value="CDD30376"/>
        <property type="gene ID" value="BN815_01597"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="14553" checksum="65EF554EA330DF63" modified="2013-07-24" version="1">MITLLTGKKGSGKTKKLIEMANAALEKTNGNVVVVEKGLKLTYDISHAARLIDIDAYDVKGGKGLYGFLAGICAGNYDVTDILVDSTLKITGTGAEVMDLLVNDLKKLEKESGANFVLSVSAADEEIPESVKEYVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPB5</accession>
    <name>R6YPB5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein conserved in bacteria</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01652</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FldB/FldC dehydratase alpha/beta subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30431">
        <property type="protein sequence ID" value="CDD30431"/>
        <property type="gene ID" value="BN815_01652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016836">
        <property type="term" value="F:hydro-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010327">
        <property type="entry name" value="FldB/FldC_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06050">
        <property type="entry name" value="HGD-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="433" mass="48582" checksum="2E0E020738E17BA2" modified="2013-07-24" version="1">MSDNANRVEFTREMKKDYTIITPNMAPIHFELIKNVLESFGYHIDLLRTTGREIADEGLKYVHNDTCYPALLSIGQLMHALHSGKYDLHKVALIMTQTGGGCRASNYIHLLRKALKKDGLDFIPVISLNLSGLESNSGFKITLPMIRQAIAALTYGDLLMLLKNQTKPYEVTPGESDALVDSWTNQLTKLFQQGKAFSQREVREYFQKIAQSFADIKRRDVEKIKVGVVGEIYVKYSPLANNNLEQFLFEQDCEVMVPGILSFMIFKVDNRLEDIRLYGGSQAKKQVCTLLKWYFTKYETDLIAAVKQFPQFTAPAPYSHLKELAGKVIGYGCKMGEGWLLTAEAMELVESGYGNVVCAQPFGCLPNHIVGKGMIRKVKNLYPQANIVPIDYDPSATQVNQENRIKLMLAVAKENLRDQEEAAPKASAAPAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPE6</accession>
    <name>R6YPE6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase N-terminal subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30456">
        <property type="protein sequence ID" value="CDD30456"/>
        <property type="gene ID" value="BN815_01673"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="1">
        <location>
            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="283" mass="30573" checksum="DB68804246C752AC" modified="2013-07-24" version="1">MAMNAQERKDLLVAAAKVRLGIIEGVYHAKSGHPGGSLSSADIFTYLYFKEMNINPQTPKDPNRDRFVLSKGHCAPGLYSVLANRGYFDVSELQKLRHIGAMLQGHPDMKGTPGVDMSSGSLGQGISAAVGMALAGKLDNKDYRVYTLLGDGESEEGQVWEAAMFAGHHKLDNLCVIVDYNGLQIDGPVSEVGGPEPFDKKFEAFGFEVITVNGNDFDELEKAFAAARACKGKPFAIIAKTTKGKGVSFMEGQVGWHGKAPNTEQYEAAKKELTENLEVLQNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPS2</accession>
    <name>R6YPS2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter SSS family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01774</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30561">
        <property type="protein sequence ID" value="CDD30561"/>
        <property type="gene ID" value="BN815_01774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="153"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="230"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="274"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="324"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="370"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="401"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="427"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="454"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="496" mass="52988" checksum="D5DC5FF1C47FB302" modified="2013-07-24" version="1">MSKEVTIWIVIGVYALFMLGIGVWYSRKGTDMAGFTVGGRNAGAWISALSYGTAYFSAVMFIGYSGGSGWSYGLWSVLVGVGNAVFGTLLAWLVLANRTRDITRRHDIKSMPQLFEKRFQSRGMRLFACAVIFVFLIPYSASVYKGLTSVCSVILGIDETVCMLIIAIASAVVLVLGGYMATLKADFVQGFIMMVGVAALIVLVVQSPQVGGLSQGLSNMMDYMESHQMAPLSGSSALALVSTVLMTSFGTWGLPQMVHKYYGIRDKREVSRGVIISTFFSLLVAGGGYFIGSFSHLFFGETLPEGGTDYIVPLMLNSAGLPNLLIGVILVLLISASVSTLSSITLTACSTVSMDLIKASWLKGLGEKTLATVTRLLCLAFVVLSYLIANYPTPILEMMSYSWGILSGAFLAPYVLTLYWKGINRAGAWAGMLGGFLTAFVPAAASGFTTPNGPVYACLAMALSFLLCLGVSPLARKLGWKAGAANPAFYAKQEES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ14</accession>
    <name>R6YQ14_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01891</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000306">
        <property type="protein sequence ID" value="CDD30686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30686">
        <property type="protein sequence ID" value="CDD30686"/>
        <property type="gene ID" value="BN815_01891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="275" mass="30455" checksum="528C718877764B70" modified="2013-07-24" version="1">MALLQCNFFSQALMRTVPIQVVLPTDKTLGPGGPAAQGPFKTLYLLHGIFGNDTDWVCGTRVQSWAQDRNLAVVMPSGDNSFYVDHPKASAYYGRFIGQELVDFTRRSFPLSTRREDTFIGGLSMGGFGAIVNGLQHPQTFGAVAALSSALILDSMLEHTQYTDFLMTNKGYYESVFGELSQVRGGVNDYDALAEKVAKEPVRPKFYLACGTEDGLLGVNRQFRDHLLRLGYDVTYEEGPGVHDWYFWDEYILKVLNWLPLADAQQGISSGNVGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQC1</accession>
    <name>R6YQC1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01995</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30791">
        <property type="protein sequence ID" value="CDD30791"/>
        <property type="gene ID" value="BN815_01995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="3">
        <location>
            <begin position="155"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="249"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="459" mass="51842" checksum="E975E7743D4C82B7" modified="2013-07-24" version="1">MASIRPIKNKEGEITSYQITVSAGRVGGKQVRKYKTWTPAPGMTARQIEKALNKEAVQFEEAVQKGYSGGGSQTFGDYAQYVIGLKERGGAKHNTIREYHHLMKRIVPAIGHIKLDKLRPQHLNAFYRNLEEQGVANVPDRATAKPDIREKVSTTQKALAAASGLSVNTVALALQGKRVSLSTAQAIAAALGRRVEELFTVDRRQEKLSSKTVLEYHRFISAVLAQAEKEMLVTYNAAQKATPPKLERKEADYFQPEEVERIRDALEGEPVKWRAVTHLLLITGVRRGELCGLRWDRIDWENHQIKIDRTILYSPDRGIYESSTKTGNVRFIKLPQETMELLREYRVWYNEQRLLNGDRWTKSGYVFVKEAGGPMMPDSVNAWLNKFSKRKGLPPIHPHKFRHTMASLLYFNHADSVSISKRLGHARVSTTTDIYSHLIAQADEAASQCIADAVLRKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQM0</accession>
    <name>R6YQM0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC-type Fe3+-siderophore transport system permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00174</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30871">
        <property type="protein sequence ID" value="CDD30871"/>
        <property type="gene ID" value="BN815_00174"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425779" evidence="8">
        <location>
            <begin position="21"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="58"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="231"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="276"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="338" mass="34238" checksum="E23CA1BDF4BA2260" modified="2013-07-24" version="1">MRSKAALGLLGLGLLVVASAALGAAVGSTVIDLPAALWELLDGEAASPDARILLHVRLPRVCASLLCGSALAVSGMLIQAVLSNPLASPNVIGVNAGAGFCTFLAMALAPGMAGAAPLGAFIGALSATLIVYAVAAGAGAGKLTIILAGVAVSSIFTAGTNTIKTFFPDTLYNGSTFLIGGFSGVSFANLSPAWLMILPALALACLLARPTDVLCLGEETAHSLGLPVKATRFGLILIACVLAGAAVSFSGQVSFVGLLCPHIVRRLFGQGRHRVLLPAAALLGASFVTLCDLLSRVLFAPYEIPVGILLSFLGGPFFLFLIVKQRRRPLPGRKGGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR72</accession>
    <name>R6YR72_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02185</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000361">
        <property type="protein sequence ID" value="CDD31031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31031">
        <property type="protein sequence ID" value="CDD31031"/>
        <property type="gene ID" value="BN815_02185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009044">
        <property type="term" value="F:xylan 1,4-beta-xylosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044993">
        <property type="entry name" value="BXL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002772">
        <property type="entry name" value="Glyco_hydro_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42721">
        <property type="entry name" value="PTHR42721"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01915">
        <property type="entry name" value="Glyco_hydro_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00133">
        <property type="entry name" value="GLHYDRLASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="SSF52279"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Glyco_hydro_3" evidence="3">
        <location>
            <begin position="30"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_3_C" evidence="4">
        <location>
            <begin position="340"/>
            <end position="570"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="665" mass="72839" checksum="626F892A233C6B78" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRG9</accession>
    <name>R6YRG9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="8">1.1.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_02325</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="8 11">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8 11">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the isocitrate and isopropylmalate dehydrogenases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31181">
        <property type="protein sequence ID" value="CDD31181"/>
        <property type="gene ID" value="BN815_02325"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006102">
        <property type="term" value="P:isocitrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004790">
        <property type="entry name" value="Isocitrate_DH_NADP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11822">
        <property type="entry name" value="PTHR11822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000108">
        <property type="entry name" value="IDH_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00127">
        <property type="entry name" value="nadp_idh_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 8 11" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 8 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Iso_dh" evidence="12">
        <location>
            <begin position="12"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="97"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="9">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="9">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR000108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000108-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="405" mass="45323" checksum="504904F07C0D6161" modified="2013-07-24" version="1">MAEFQKIPMKTPLVEMDGDEMTRVIWKMIKDILLLPYIDLNTEYYDLGLENRDKTNNQVTVDSALATKKYGVAVKCATITPNAARMDEYHLKEMWKSPNGTIRAILDGTVFRTPILVRGITPFIPGWRKPITIARHAYGDVYKNVEAQVPAGAKAELLVTKADGTEEKYLIHQFDGPGVIQGLHNIDKSIESFARSCFNFALDAKQDLWFATKDTISKKYDHRFKDIFQEIYDKEYAGKFQQAGIEYFYTLIDDAVARVVRSEGGFIWACKNYDGDVMSDMVATAFGSLAMMTSVLVAPDGTCEYEAAHGTVQRHYYKYLKGETTSTNSVATIFAWSGALRKRGQLDGNQALVDFADKLEAATISTIEGGVMTGDLAAMSTLPEIHKADTEGFLRAIDENLRQML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRJ3</accession>
    <name>R6YRJ3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">Polyphosphate kinase</fullName>
            <ecNumber evidence="6 7">2.7.4.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP-polyphosphate phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Polyphosphoric acid kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ppk</name>
        <name evidence="13" type="ORF">BN815_02355</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>[phosphate](n) + ATP = [phosphate](n+1) + ADP</text>
            <dbReference type="Rhea" id="RHEA:19573"/>
            <dbReference type="Rhea" id="RHEA-COMP:9859"/>
            <dbReference type="Rhea" id="RHEA-COMP:14280"/>
            <dbReference type="ChEBI" id="CHEBI:16838"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="PTM">
        <text evidence="6 7">An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the polyphosphate kinase 1 (PPK1) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.1" evidence="6 7"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31211">
        <property type="protein sequence ID" value="CDD31211"/>
        <property type="gene ID" value="BN815_02355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009358">
        <property type="term" value="C:polyphosphate kinase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006799">
        <property type="term" value="P:polyphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1840.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00347">
        <property type="entry name" value="Polyphosphate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003414">
        <property type="entry name" value="PP_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041108">
        <property type="entry name" value="PP_kinase_C_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024953">
        <property type="entry name" value="PP_kinase_middle"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036830">
        <property type="entry name" value="PP_kinase_middle_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025200">
        <property type="entry name" value="PPK_C_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025198">
        <property type="entry name" value="PPK_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036832">
        <property type="entry name" value="PPK_N_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30218">
        <property type="entry name" value="PTHR30218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02503">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13090">
        <property type="entry name" value="PP_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17941">
        <property type="entry name" value="PP_kinase_C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13089">
        <property type="entry name" value="PP_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015589">
        <property type="entry name" value="PP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140356">
        <property type="entry name" value="SSF140356"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03705">
        <property type="entry name" value="poly_P_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 6 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PP_kinase_N" evidence="10">
        <location>
            <begin position="8"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase" evidence="9">
        <location>
            <begin position="123"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C_1" evidence="12">
        <location>
            <begin position="332"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="domain" description="PP_kinase_C" evidence="11">
        <location>
            <begin position="505"/>
            <end position="675"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="688"/>
            <end position="710"/>
        </location>
    </feature>
    <feature type="active site" description="Phosphohistidine intermediate" evidence="6">
        <location>
            <position position="436"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="406"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="469"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="565"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="593"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF13090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="710" mass="80884" checksum="4FF29C746F4DE74D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA12</accession>
    <name>R6ZA12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Resolvase N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00587</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27317">
        <property type="protein sequence ID" value="CDD27317"/>
        <property type="gene ID" value="BN815_00587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00398">
        <property type="entry name" value="RECOMBINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="6">
        <location>
            <begin position="7"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-serine intermediate" evidence="4 5">
        <location>
            <position position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606118-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="218" mass="24657" checksum="188B3094E846281C" modified="2013-07-24" version="1">MNTIESRTYYYARVSSKEQNLDRQIAAFKALGAQGRDIIADKGSGKDLERKGYQALKSAILRRGDTLVVKSLDRLSRNKADIKNELQYFKDNGIRLKVIDLPTTMTELPEGQEWVFEMVNNILIEVLGTIAEQERQTIRQRQAEGIEAAKAKGKKLGRPALAFPPNWEEVYSSWKAGEITAKTAMEQTNTKRTSFYKLVKKTEGTKVTESPLQAKREG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA24</accession>
    <name>R6ZA24_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cytosine-specific methyltransferase</fullName>
            <ecNumber evidence="8">2.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00592</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>a 2'-deoxycytidine in DNA + S-adenosyl-L-methionine = a 5-methyl-2'-deoxycytidine in DNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:13681"/>
            <dbReference type="Rhea" id="RHEA-COMP:11369"/>
            <dbReference type="Rhea" id="RHEA-COMP:11370"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:85452"/>
            <dbReference type="ChEBI" id="CHEBI:85454"/>
            <dbReference type="EC" id="2.1.1.37"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.37" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27327">
        <property type="protein sequence ID" value="CDD27327"/>
        <property type="gene ID" value="BN815_00592"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003886">
        <property type="term" value="F:DNA (cytosine-5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018117">
        <property type="entry name" value="C5_DNA_meth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001525">
        <property type="entry name" value="C5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031303">
        <property type="entry name" value="C5_meth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00145">
        <property type="entry name" value="DNA_methylase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00105">
        <property type="entry name" value="C5METTRFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00675">
        <property type="entry name" value="dcm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00094">
        <property type="entry name" value="C5_MTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00095">
        <property type="entry name" value="C5_MTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51679">
        <property type="entry name" value="SAM_MT_C5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0680">Restriction system</keyword>
    <keyword evidence="4 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="328" mass="35832" checksum="C2471479E27F0610" modified="2013-07-24" version="1">MQQPLTCVEICAGAGGQALGLAMAGFVHVALVEYEADYCKVLKENRPEWNVICADVHDFDGHPYRGVDLLAGGVPCPPFSVAGKQLGKDDERDLFPEAIRLIDEIKPRAVMLENVRGFLDPGFDEYREHIFSEIKKLGYVTHIKLLNASNFGVPQLRPRVVIVGIRKDQLGVFAYPEEKPDSAPPVGKVLYDLMAENGWEKAKEWAAHADRIAPTLVGGSKKHGGPDLGPTRARNAWAELGVDGRGIANEAPAAGFEGMPRLTSRMMARIQGFPDTWTFGKRKTVACRMIGNAFPPPVAQAVGEKIKECLEYGSADCKREVPLSQAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDQ4</accession>
    <name>R6ZDQ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">ATP phosphoribosyltransferase regulatory subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hisZ</name>
        <name evidence="8" type="ORF">BN815_00910</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heteromultimer composed of HisG and HisZ subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">This function is generally fulfilled by the C-terminal part of HisG, which is missing in some bacteria such as this one.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the class-II aminoacyl-tRNA synthetase family. HisZ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28652">
        <property type="protein sequence ID" value="CDD28652"/>
        <property type="gene ID" value="BN815_00910"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00125">
        <property type="entry name" value="HisZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004517">
        <property type="entry name" value="HisZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707">
        <property type="entry name" value="PTHR43707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00443">
        <property type="entry name" value="hisZ_biosyn_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="tRNA-synt_His" evidence="7">
        <location>
            <begin position="11"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004667"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025246"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="399" mass="43866" checksum="2E1DA92651E46C9F" modified="2013-07-24" version="1">MRTYSKITPEGARDLLFEECRARREVQAKLSQVFTLRGYREVITPGLEYFDVFNLPGAAIPQQEMYKCTDNHGRLVVFRPDSTLPIARMAASRLQGWERPLRFFYSQTIYRNRPDLSGRSDESAQMGIELMGAGGLRADLEAIATAVEALSACVPDFRVEIGHARFFQALADQLPLSPEEKEGLRDTIESKNYAALSERLDPLGDLPAARAMAQLPRLFGGEEALAGAERWFQDGETREILESLKGLYQALGQLGLGDRLMVDLGLVQRNDYYTGVVFSAYVPQRGDAVLLGGRYDGLCGKFGDPMPAVGFSIDLDAVADLNAALAGPSPVEALVYGEPGFEMQGQKLVSSLAGQGVLCESSLFETEAETLEYAKKRNIPTVYVVGENTREITLEGGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZE31</accession>
    <name>R6ZE31_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00954</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28782">
        <property type="protein sequence ID" value="CDD28782"/>
        <property type="gene ID" value="BN815_00954"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="29"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="23641" checksum="3D4A5A874E871019" modified="2013-07-24" version="1">MALEIPAYNLFMMCESLRREAFAPLPAGYSVRLCREDELETWMALNAESPESFPFLQDYYQRVYQNKGKLFFEKCLFVCDSQDAPVGTCFLWKAYGKITTLHWLKVLPQLEGLGLGRGLLSQVLAQAGPEDFPIYLHTHPSCFRAVHLYGEFGFRLLRGPAVGGRSNDLEKSLPYLEQAMPREYFQQLKFADAPQALLQAAAGLPEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEV6</accession>
    <name>R6ZEV6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylsulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01021</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29002">
        <property type="protein sequence ID" value="CDD29002"/>
        <property type="gene ID" value="BN815_01021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="330"/>
            <end position="627"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="701" mass="78245" checksum="DC9CB16973DDF963" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF08</accession>
    <name>R6ZF08_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29072">
        <property type="protein sequence ID" value="CDD29072"/>
        <property type="gene ID" value="BN815_01048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="188" mass="21371" checksum="A5227394B708DD2A" modified="2013-07-24" version="1">MKYISKGLVVEGSTEHILKIQRGGYEFQLTGDRARLWLNGRFGVADADGTNPRYVKELLHLKRVGLTEPVGEEPEGVYRAMTQCVLVPAKAGRLRTPLNPLESQTLQWLREAGLRLTMAELVCLRERDIRPEPGLLGEENRQVLTETIYTQQTIFDNVLEAQMERASCREEMVRAVLGLLKKKRIVLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGD3</accession>
    <name>R6ZGD3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000157">
        <property type="protein sequence ID" value="CDD29497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29497">
        <property type="protein sequence ID" value="CDD29497"/>
        <property type="gene ID" value="BN815_00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="22278" checksum="54274B44BBEC6953" modified="2013-07-24" version="1">MKGLFSFSVLPSCGKQVVKYLDPCYNTNEVRAVQFTPFVWDQSGNHVPVSIEPMTKQDAVQTNFLPKWQTSWTSDFLQEGNFDCYSAKVSDELIALAAYEILTDSLVVHIVYMEAHPESNPTMDGGDPKYTGIGQMLIAFGVKLSIDNGLTGDVVLEAKTSALAAHYERDFGAVALPDFSSSAPRFLIADEAAKRIFCNYLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGF8</accession>
    <name>R6ZGF8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidyl-prolyl cis-trans isomerase cyclophilin-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01188</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29532">
        <property type="protein sequence ID" value="CDD29532"/>
        <property type="gene ID" value="BN815_01188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="229"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="259"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="33806" checksum="EB11144449046DB6" modified="2013-07-24" version="1">MNLTDKARRGSQEAMEALFDMTKNDAAYLCRLLLGDNQAASVAVPRIYRSLWEQVLAGRITTEEDFAQAALVKTAAFCKTVLAKKDSKSFRIPQNRDFVLGMGEGRLSLQGEPWELAVDNLPPLHRFLYVLPVLCGYTQAQLAKLFHTNEETVRLAQVAEAICLKRLFAALSRLLGREFSLTQEEFHRALKANRPRAEVPPTVDSAVLHAIRAVCRPIQRRLAKKRKRVALAVGTVVVLVCLTGGIVYASVAGDGGEAAESTSSVSSAVEESSAAETSSVTSAASEESSALSESSTVSEDTASSESSAVDSEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHE5</accession>
    <name>R6ZHE5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29887">
        <property type="protein sequence ID" value="CDD29887"/>
        <property type="gene ID" value="BN815_01285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="188" mass="21452" checksum="33ACC363748E63F7" modified="2013-07-24" version="1">MKPIETERLLLRPWRLEDAADMYAYAKNPNVGPNAGWKPHESVEESKAILESWIHSDEEEDIWAIVPKETGRACGSIGLHQDGRRPGVPNCRELGYVLGQEQWGKGYMTEAAKAVLRYGFAELGLGLIAVRHHLHNQRSRRVIEKCGFHYEGTMRQYSRRYDGTLLDGCFYSMTAQEFQALQAAWKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIP6</accession>
    <name>R6ZIP6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phage integrase SAM-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01561</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30327">
        <property type="protein sequence ID" value="CDD30327"/>
        <property type="gene ID" value="BN815_01561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="4">
        <location>
            <begin position="14"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="31091" checksum="867489B649B9FE77" modified="2013-07-24" version="1">MAQQEDQERTAGAALTEAKMEGYLEKLAEKGCAPGTLALYRTNIEKFLQWLNGTPLDPGSATRWRDHLLALGRMPRTVNLQLSPINGLLAHLKLWDYQAPTLLCLEEDAQPELRREEYLRLLAAAKARGNRRVYLAVKVFACLGLNVHELPLLTVEAAASGSVPLADGPPRSLPRCLQRELEEYIQDMGIPAGPVFITRSGKPMSRTSVTTAIQHLAKSAGVEPEKCNPRCLRKLYLATLQGFQRQVTQLVEQAHNSLVEQEQAVVGWSVGQAGPWHGKGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIT2</accession>
    <name>R6ZIT2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01594</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000234">
        <property type="protein sequence ID" value="CDD30367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30367">
        <property type="protein sequence ID" value="CDD30367"/>
        <property type="gene ID" value="BN815_01594"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="7877" checksum="4379B7FA038F8E5E" modified="2013-07-24" version="1">MKKLILGIAVMTLGSLGAIALLFGTFVAEPAVYNGVSGWLGCFLDRGLLGPFTVFVAVALLGLAFALWGVFEKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJX8</accession>
    <name>R6ZJX8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30757">
        <property type="protein sequence ID" value="CDD30757"/>
        <property type="gene ID" value="BN815_01961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="275"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="307" mass="33498" checksum="A04EECE2B7FC6B18" modified="2013-07-24" version="1">MWKWSLLALGLGLLFAVLAWSGLRRRSSWRDGEKLWGQVAGVSVTPAWNGADSMDGDRSPARVTLRLSLEGREVSLQKDFPKVLAAPALGQRVQVLYRRSTGEWALWKDVRSWWVLWAILAATAVAVFLLLLLGGRTVAAQLSDYTVDHPNPAGSGLALLVGFGAGATGAALAWGLFLPVLRDAFRPLAWVARSLLGQWEPHQAKFVGWVHESDGDGGVRSYPLFSLGQGQDFFPAVTRQKHFAPGDILTVYKSPKGRFSLEPEPLDYLLLPLHLLPVFFVGLFVLCLLVTAAFLLWTGATGLAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK94</accession>
    <name>R6ZK94_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00185</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30882">
        <property type="protein sequence ID" value="CDD30882"/>
        <property type="gene ID" value="BN815_00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="404"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="433"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="466" mass="50304" checksum="5F013C210C59C731" modified="2013-07-24" version="1">MNPLPARLWGKLLEPKTQVEPSRQPFSNQDLKQLIVPLFVEQLLAMLVGIADTLMVSYAGEAAVSGVSLVNMLNTFFIFLFTALASGGAVVVSQYIGSRDGANSNLAAGQLYTLSFLFSLVCMAATLVWNRPLLGLLFGQVEPDVMEASAIYLRISAYSYPFLALYNAGAALYRCMSKTKVTMQISLVMNAINVAGNAIGIFVLHAGVAGVAWPSTLSRAFAAVAMTALCFSQKNQVRLLWKNLLTWNSSMVRRLLRIAVPNSIENGLFQLAKVALSSITAMFGTVQIAANGVAQSIWSLAALVGSAMGPAFITVVGQCMGASDTEAASYYMRKLTRLTLSVSIAWNALVLLLTPVMLLFYDLSLEAKNLVFWLVVIHNIFNAVAYPISGPFSNGLRAAGDVKFTMYISLFSTIVVRVALSIVLGVWLNLGVIGIALAMAGDWCIKAVILLFRYKSGAWKSFRVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKT4</accession>
    <name>R6ZKT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02201</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31047">
        <property type="protein sequence ID" value="CDD31047"/>
        <property type="gene ID" value="BN815_02201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019808">
        <property type="term" value="F:polyamine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015846">
        <property type="term" value="P:polyamine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001188">
        <property type="entry name" value="Sperm_putr-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019574">
        <property type="entry name" value="Periplasmic_polyamine_BP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00909">
        <property type="entry name" value="SPERMDNBNDNG"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438689" evidence="2">
        <location>
            <begin position="27"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR019574-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="351" mass="38424" checksum="2545EB1F3F9DCCE2" modified="2013-07-24" version="1">MKKILSMALAALLLVGTLGGCSTSGGENGKLVLYTWENMFPQEVLDGFTQETGISVTYSNFDTDETMLARLEAAEGGDYDLVIADDYIIETAIQEGLVQELDTSKLENYGSINPVYQGQFYDPENKYTVPYGAGVQTIVYDPSAVDVEIKGYADLWDASLEDNLGIIDNFRVVNGMALKVLGESYNTEDTAAIEAAGDKLLELAPNIRLIKDQNTQDDLLSGEVGAAVLYTSQATMAKMANPDLEVVFPEEGIGFGIMAQFIPANAPNAENAYKFIDYILQPEVAAQCFEYIGYYCTNLDAEEYISEEYRDFLTLPADIDASSMEMIENVSAEALETHSRVYTEFKTACGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL02</accession>
    <name>R6ZL02_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">4-hydroxy-tetrahydrodipicolinate reductase</fullName>
            <shortName evidence="9">HTPA reductase</shortName>
            <ecNumber evidence="9">1.17.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapB</name>
        <name evidence="12" type="ORF">BN815_02271</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NAD(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:35323"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + NADP(+) = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:35331"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="EC" id="1.17.1.8"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the DapB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.8" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31127">
        <property type="protein sequence ID" value="CDD31127"/>
        <property type="gene ID" value="BN815_02271"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008839">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate reductase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016726">
        <property type="term" value="F:oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00102">
        <property type="entry name" value="DapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022663">
        <property type="entry name" value="DapB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000846">
        <property type="entry name" value="DapB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022664">
        <property type="entry name" value="DapB_N_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023940">
        <property type="entry name" value="DHDPR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20836">
        <property type="entry name" value="PTHR20836"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05173">
        <property type="entry name" value="DapB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01113">
        <property type="entry name" value="DapB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000161">
        <property type="entry name" value="DHPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00036">
        <property type="entry name" value="dapB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01298">
        <property type="entry name" value="DAPB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="8 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 9" id="KW-0520">NAD</keyword>
    <keyword evidence="4 9" id="KW-0521">NADP</keyword>
    <keyword evidence="6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DapB_N" evidence="10">
        <location>
            <begin position="2"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="DapB_C" evidence="11">
        <location>
            <begin position="116"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="(S)-2,3,4,5-tetrahydrodipicolinate binding" evidence="9">
        <location>
            <begin position="153"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="8"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="86"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="110"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>(S)-2,3,4,5-tetrahydrodipicolinate</name>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="26918" checksum="85FD420050ECDCE2" modified="2013-07-24" version="1">MTKIILCGCNGKMGAAVQNFASQREDCSIVAGVDVAGQSQGGFPVYASLQDVQEEAQVVVDFSHPSALSSILEYCRSHPGTAAVLCTTGYSAQQTQEIQEASKELPLFYSRNMSLGVNLLIELAKKAEAVLGDSFDVEIVEMHHNQKIDAPSGTALMIADAINQVREDSMQYVYDRHSQRKKREKKEIGLHSVRGGTIVGEHQVIFAGQSEVLTLSHSAQSKELFAAGAVNAAVFMAGKGPGLYDMSHLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLL3</accession>
    <name>R6ZLL3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyltransferase family 36</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00277</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000405">
        <property type="protein sequence ID" value="CDD31342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31342">
        <property type="protein sequence ID" value="CDD31342"/>
        <property type="gene ID" value="BN815_00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11755">
        <property type="entry name" value="GH94N_ChBP_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009342">
        <property type="entry name" value="Carb-bd_put_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037828">
        <property type="entry name" value="GH94N_ChBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037018">
        <property type="entry name" value="Glyco_hydro_65_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010383">
        <property type="entry name" value="Glyco_hydrolase_94"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06165">
        <property type="entry name" value="Glyco_transf_36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01068">
        <property type="entry name" value="CBM_X"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CBM_X" evidence="1">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="309" mass="34302" checksum="2AFAB8DAB92C97BE" modified="2013-07-24" version="1">MQYGHFDDRAREYVITRPDTPAPWVNYLGSPEYGAIISNNAGGYSFARSGANGRILRYVFNQFDQPGRYLYLRDDDSGDFWSASWQPVGKDLAHYRSRCCHGMGYTRMMADYAGISSEATYYVPDGCAYEVWALRVTNTGPTPRRLTLTGYAEFTNHSNYEQDQVNLQYSLFISRTVFAGNRLTQQIHGNLDALAAGEDVDDKQVTERFFGLAGAPVASYCGDKQAFLGRYHSYGDPQGVAAGDLGNVDGYNENTCGALSCAVTLQPGESRTVVFVLGMRPSAEAAQILAAYRDPEPRVRQEVEALRQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLX1</accession>
    <name>R6ZLX1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00347</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000422">
        <property type="protein sequence ID" value="CDD31447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31447">
        <property type="protein sequence ID" value="CDD31447"/>
        <property type="gene ID" value="BN815_00347"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="8331" checksum="E98A02F7034E479F" modified="2013-07-24" version="1">MGIREEIKAYIVRSGMTMTEVVDRLYDDYDWSRSVPNLSGKLRRGSLRYQEAVELADVMDYDIVWVKRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMB9</accession>
    <name>R6ZMB9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">BATS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00414</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000431">
        <property type="protein sequence ID" value="CDD31592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31592">
        <property type="protein sequence ID" value="CDD31592"/>
        <property type="gene ID" value="BN815_00414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044271">
        <property type="term" value="P:cellular nitrogen compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018130">
        <property type="term" value="P:heterocycle biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901362">
        <property type="term" value="P:organic cyclic compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901566">
        <property type="term" value="P:organonitrogen compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044272">
        <property type="term" value="P:sulfur compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042364">
        <property type="term" value="P:water-soluble vitamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010722">
        <property type="entry name" value="BATS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024007">
        <property type="entry name" value="FeFe-hyd_mat_HydG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034428">
        <property type="entry name" value="ThiH/NoCL/HydG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43583">
        <property type="entry name" value="PTHR43583"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43583:SF2">
        <property type="entry name" value="PTHR43583:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06968">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00319">
        <property type="entry name" value="Fe_hydrogenase_maturase_(HydG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00876">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03955">
        <property type="entry name" value="rSAM_HydG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="BATS" evidence="6">
        <location>
            <begin position="275"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="471" mass="53702" checksum="B204BFD0AB4F316B" modified="2013-07-24" version="1">MYNPKSLKAEEFIDHQEILDTLAYADENKNNVELIDQILNKARERKGLSHREASVLLACDIPEKVQELYALAEQIKKDFYGNRIVIFAPLYLSNYCVNGCLYCPYHQKNKHIPRKKLTQEEVEKEVIALQDMGHKRLAIETGEDPVNCPIEYVLDCIHTIYSIKHKNGAIRRVNVNIAATTVENYRKLKEAGIGTYVLFQETYHKESYEHLHPTGPKSNYCYHTEAMDRAMEGGIDDVGLGVLFGLELYRYEFAGLLMHAEHLEAVHGVGPHTISVPRVKHADDIDPDEFDNGIDDDTFLKICACIRVAVPYTGMIMSTRENQSVRERALHLGISQVSGGSRTSVGGYTEEERPHDTEQFDVSDNRTLDEVVAWLMELGYIPSFCTACYREGRTGDRFMSLCKSGQIQNCCHPNALMTLKEYLMDYAAPETKAIGEKLIQAELENIPKEKVKEICKDHLEKIEQGIRDFRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMG8</accession>
    <name>R6ZMG8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplJ</name>
        <name evidence="7" type="ORF">BN815_00431</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31647">
        <property type="protein sequence ID" value="CDD31647"/>
        <property type="gene ID" value="BN815_00431"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05797">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00362">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022973">
        <property type="entry name" value="Ribosomal_L10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_L10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002363">
        <property type="entry name" value="Ribosomal_L10_eubac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_L10P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11560">
        <property type="entry name" value="PTHR11560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="SSF160369"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01109">
        <property type="entry name" value="RIBOSOMAL_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="176" mass="18997" checksum="E8DBE6F2D3EDCA7D" modified="2013-07-24" version="1">MPSEKILEQKKQQVAQLAEDFKKANVGVLVNYEGITVEKDTKLRKQLREAGCEYKVVKNTLLSLAFQEAGIEGLEEHLHGATAIAYSENGYVDAPKILSDYAKDNENFTVKAGFIDGDTVDAKSIDELAKLPPKEVLVAQVLGGLNGPIQGFANVLNGTIRGLVIALNAIAEKQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUN0</accession>
    <name>R6XUN0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycoside Hydrolase Family 25</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000040">
        <property type="protein sequence ID" value="CDD27433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27433">
        <property type="protein sequence ID" value="CDD27433"/>
        <property type="gene ID" value="BN815_00625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016998">
        <property type="term" value="P:cell wall macromolecule catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002053">
        <property type="entry name" value="Glyco_hydro_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01183">
        <property type="entry name" value="Glyco_hydro_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51904">
        <property type="entry name" value="GLYCOSYL_HYDROL_F25_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="33864" checksum="3877536E467AD21A" modified="2013-07-24" version="1">MASRHSKQQQQKVNPVLLATSAAVALVVVMVVVAISLVGGGGQGQEEESSGTGVPEGMVLVNDLYEGQRLVPDFDMDLNQYDTEKFVEENGFIRYQDGKAVAGVDVSEHQGTIDWQQVKDAGFEYAILRVAYRGMTEGGLNVDSTFEQNYQGATAAGLKVGVYFFSQAITQEEAREEAQYVLDTLDGRELDYPVVFDWEIPIPSEQLPAEDLRAYDISGEVVTAMAKAFCQEIRSNGYTPCVYTNKSMAYNTFNLEELKDFPLWYAEYQPAPSLYYHFQMWQYSASGTVPGIAGSVDLNICFEPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZP2</accession>
    <name>R6XZP2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH tetR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000135">
        <property type="protein sequence ID" value="CDD29238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29238">
        <property type="protein sequence ID" value="CDD29238"/>
        <property type="gene ID" value="BN815_00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="23216" checksum="804C1D5AC3632AAA" modified="2013-07-24" version="1">MEEKISATLESIQRAAMQEFLDKGFQGASLRQIVKNAGVTTGAFYGYFSSKEALFNALVEPHAAALMGKFMEAQITFAELPEEQQPEHMGVESGTYLDWMVDYICQHREPVKLLLTRAEGTSYEHFVHNMVEVEVEYTLQYMEVLRRLGKDIPVLDKSLCHIIASGMMGGIFEIVVHDMPREQALRDVAQLRDFYTAGWLKLMGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y079</accession>
    <name>R6Y079_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">PHB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00564</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family. Flotillin subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000029">
        <property type="protein sequence ID" value="CDD27280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27280">
        <property type="protein sequence ID" value="CDD27280"/>
        <property type="gene ID" value="BN815_00564"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031905">
        <property type="entry name" value="Flotillin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027705">
        <property type="entry name" value="Flotillin_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13806">
        <property type="entry name" value="PTHR13806"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15975">
        <property type="entry name" value="Flot"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="6">
        <location>
            <begin position="23"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="478"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="202"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="505" mass="54775" checksum="2E13E1022A58021D" modified="2013-07-24" version="1">MEFLLPYLPIIIPVLVILVILLMGYVKAPPDQAYIISGLRKNSRILIGQAGIRIPFLERLDKLYLGQMTVDIKTEQSVPTNDFINVSVDAVAKVRISPEENGIRLAAKNFLNKKGNDIAMDLKDSLQGNMREIIGTLTLEKINTDRDSFSDQVMQKASRDMEKLGIEILSCNIQNVQDENGLIQDLGAENTSLIKKNAAIAKAQADRDVAIAQANADKAANDAKVESQTQIAQKQNELEIKRAELKITADTKKAEAEAAYEIQNQAQQKIIGTATVDAEIAKTAREAELKKQEVEVAKQALDAEIRAKADAERYRKEQEAQAALFQRQKDAEAKRYEQEQEAEAVKKQAEAARFAKEQEAAGISAVGKAEAAAIQAKALAEAEGIDKKAEAMKKYGQAAVIEMVMNALPEIAKNVAQPLSKVDKITMYGEGNSAKLLQDIINGTTQVSEGIAQGMGIDIKALLSGMLGGKVAAESQEPPAPVAVVVPAEEPAPSPQEAQEAEKPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0B2</accession>
    <name>R6Y0B2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00586</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27315">
        <property type="protein sequence ID" value="CDD27315"/>
        <property type="gene ID" value="BN815_00586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="43" mass="4996" checksum="9858D2F64740673D" modified="2013-07-24" version="1">MTQKTLAIFQESLRCLPFQGVTIKDFGEKIHIRPHTLYNYISG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Y6</accession>
    <name>R6Y0Y6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29708">
        <property type="protein sequence ID" value="CDD29708"/>
        <property type="gene ID" value="BN815_01236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025051">
        <property type="entry name" value="DUF3990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13151">
        <property type="entry name" value="DUF3990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="18104" checksum="F5190F90534550DB" modified="2013-07-24" version="1">MILYHGSKSIVEFPEIRVQRYNKDFYFGFYCTLYPEQAIRWAIRFDGIGCLNEYSYTPDDSLKVKRFPEMTEEWLDFIVSCRLGHPHDYDIVEGPMANDTIFNYVQNFADGKISREAFWALAKFKHPTHQISFHTARALATLSFVKGVEVRNEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1X6</accession>
    <name>R6Y1X6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00109</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000190">
        <property type="protein sequence ID" value="CDD30043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30043">
        <property type="protein sequence ID" value="CDD30043"/>
        <property type="gene ID" value="BN815_00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="187"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="285" mass="33314" checksum="BC5F87E90B62D67F" modified="2013-07-24" version="1">MSLTFNTFTPRQTMEDGLFECHHYLDRVPPQVEYHEHEFYEIFFFLSGDVSYIIEGSTYQLRPGDILLTSNEDIHKPEVRAGKPYERYVIWIHPDAIQAFHKLGDDLAACFLDASDRRFKLIRPDSGTVTQLKSLCEKIIQARKDTGFAKETLAYLYLCEFLVYLNRAYFSLPDSIWEDVSENENVNQVVTYIHEHLAEDLSLDKLASHFYVSKSYLSHKFKEYTGLTLYQFIIKKRLVVARNMLREGLPVTAVCLQCGFNDYSNFLKQFKREFGRSPKEFMGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y280</accession>
    <name>R6Y280_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PF04327 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01413</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30168">
        <property type="protein sequence ID" value="CDD30168"/>
        <property type="gene ID" value="BN815_01413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd16332">
        <property type="entry name" value="Prp-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1490">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007422">
        <property type="entry name" value="Peptidase_Prp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036764">
        <property type="entry name" value="Peptidase_Prp_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39178">
        <property type="entry name" value="PTHR39178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04327">
        <property type="entry name" value="Peptidase_Prp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118010">
        <property type="entry name" value="SSF118010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="107" mass="11772" checksum="41C41B361445BEB4" modified="2013-07-24" version="1">MVCVHFLTPPEGTVLGFSLEGHAGYGEAGQDIVCAAVSSAAYLTVNTLTDVCHVTPLSLRVGEGEMFFRIEPKDEPRCRDLLQGFKLHLQSLEEQYPSALRVAYMEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2C9</accession>
    <name>R6Y2C9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sporulation protein YlmC/YmxH family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01456</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30213">
        <property type="protein sequence ID" value="CDD30213"/>
        <property type="gene ID" value="BN815_01456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014238">
        <property type="entry name" value="Spore_YlmC/YmxH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40061">
        <property type="entry name" value="PTHR40061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02888">
        <property type="entry name" value="spore_YlmC_YmxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PRC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="98" mass="10893" checksum="0F687D313587B53B" modified="2013-07-24" version="1">MTCRLDSLRDKEVINVKDGGRIGFVSDAEVDTQEAKLTAVVVYGRLRLFGLLGREADFVIPWKDIVLIGEDTVLVQYEAPAQAQRQSALGRLLEKIGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2L2</accession>
    <name>R6Y2L2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heavy metal-associated domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000076">
        <property type="protein sequence ID" value="CDD28030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28030">
        <property type="protein sequence ID" value="CDD28030"/>
        <property type="gene ID" value="BN815_00743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMA" evidence="1">
        <location>
            <begin position="57"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="13782" checksum="E70348079AAC5618" modified="2013-07-24" version="1">MEGMLPTVLICLALLLIVVFSVRSYLKKLKTGCCGSGGDQVKRVRPGDRDVSHYPYAKAVRVEGMHCQNCARRVENAFNAKEGFYAKVDLGKKTALVRSKREVPDEELKQVVRGLGYSPVAVEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Q4</accession>
    <name>R6Y2Q4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phage integrase SAM-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01562</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30328">
        <property type="protein sequence ID" value="CDD30328"/>
        <property type="gene ID" value="BN815_01562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="31"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="24089" checksum="FF7D33427F515E01" modified="2013-07-24" version="1">MLVPLNRFLDFLGYGNCKVKALRIQRRFFRENRKELTRQEYDRLLSTARAQGKERLALLMEAICATGIRVSEVQYLTVEALREGRAEISLKGKIRTILIPGKLRKKLLQYAKKEKNASGAVFRTRNGKPLSRKQIWAEMKALCSQAGVAASKVFPHNLRHLFARAFYNVCRDVAKLADVLGHSSLETTRLYLISTGKEHERQLERLGFVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3G5</accession>
    <name>R6Y3G5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">3-dehydroquinate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01719</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000267">
        <property type="protein sequence ID" value="CDD30503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30503">
        <property type="protein sequence ID" value="CDD30503"/>
        <property type="gene ID" value="BN815_01719"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016205">
        <property type="entry name" value="Glycerol_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43616">
        <property type="entry name" value="PTHR43616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000112">
        <property type="entry name" value="Glycerol_dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Fe-ADH" evidence="5">
        <location>
            <begin position="13"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="97"/>
            <end position="101"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="119"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000112-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000112-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="366" mass="40710" checksum="6EB654D949BB8EE6" modified="2013-07-24" version="1">MKLENYEVHLPSYSIGDKIYEKIGPVCESYGKKVLVIGGRKALAAAYDKIAAYVAQTNLEIIGTEIYGENCTYATVERLRALPLYQEADMVFGVGGGKALDTVKCLCIPDDKPVFSFPTIASNCAATTSVSILYNEDGTFLKPHFFIRPVMHAFIDTQIIAQAPSQYMWAGIGDTYAKYYEALISSRDERLEHFTAVGVAVSQMCRDPLLLYSAQALEDHKQGLCTYAVEQVVLAIVVTTGIASIFLTKDYTPDYNSGLAHAIFYALTAYPVIEERHLHGEVVAFGILIALLVDGQKEEFEKIYELNKSIGLPTRLSDIEITPAQWEECLEVIPTMSDVAHYPYKVTRPMLEDAMKTLEERAVSHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3H0</accession>
    <name>R6Y3H0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00141</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000268">
        <property type="protein sequence ID" value="CDD30508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30508">
        <property type="protein sequence ID" value="CDD30508"/>
        <property type="gene ID" value="BN815_00141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14659">
        <property type="entry name" value="Phage_int_SAM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="6">
        <location>
            <begin position="69"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="5">
        <location>
            <begin position="186"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="366" mass="41542" checksum="4F97A2A8FD7967B4" modified="2013-07-24" version="1">MAKKRANGEGSIRKRKDGRWEGRYTAGHTPEGKAIYRNVLGKTQAEVVEKLRKAIDESKGLDVAKAGQYTLGQWMRVWYENYASIKVRPSSHATYMGIIKNHIDPAIGDIPLTKLTTLDLQKFYRDLLTGGRVERKESEKKPKGLGPKTVRNIHQIISSALQLAIHQKLIPHNPAEGCALPRVERNEMKTLTADQLTAFLQEAKRTGVFEMYYLELATGLRRGELLGLKWQDVDFNQGTITVRRQISRINGKVVEAPLKTKNAYRVIPLGEQAMAVLQSQQEKTHSEYVFPSPNGGPISPDSVRNMLRRVLKRAGLPYVRFHDLRHPYVKHTTKKYNSEKQKTQTTNLSADSLGFLFLLFILRLCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y401</accession>
    <name>R6Y401_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA(Ile)-lysidine synthase</fullName>
            <ecNumber evidence="7">6.3.4.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">tRNA(Ile)-2-lysyl-cytidine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">tRNA(Ile)-lysidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tilS</name>
        <name evidence="9" type="ORF">BN815_01908</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H(+) + lysidine(34) in tRNA(Ile2)</text>
            <dbReference type="Rhea" id="RHEA:43744"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10670"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83665"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="7">The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the tRNA(Ile)-lysidine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.19" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30703">
        <property type="protein sequence ID" value="CDD30703"/>
        <property type="gene ID" value="BN815_01908"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01992">
        <property type="entry name" value="PP-ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01161">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012796">
        <property type="entry name" value="Lysidine-tRNA-synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012094">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012795">
        <property type="entry name" value="tRNA_Ile_lys_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015262">
        <property type="entry name" value="tRNA_Ile_lys_synt_subst-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43033">
        <property type="entry name" value="PTHR43033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09179">
        <property type="entry name" value="TilS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11734">
        <property type="entry name" value="TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00977">
        <property type="entry name" value="TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02433">
        <property type="entry name" value="lysidine_TilS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02432">
        <property type="entry name" value="lysidine_TilS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TilS_C" evidence="8">
        <location>
            <begin position="365"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="24"/>
            <end position="29"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="458" mass="50160" checksum="80B08A8BB0B1BB80" modified="2013-07-24" version="1">MSELLAGADISGLPQRGKVVVGFSGGADSTALAHWLLGRLGPERLVLAHVNHQLRGEESDRDEAAAHAFAQRFGLDFALRREDVAALARRRGLGLEECGRQVRYGFFQSLAPGEEDRILTAHNANDNAETVLMHLCRGTSLPGLLGIPARRGKVLRPLLRVPRGEIEAYCQAHGLPYVTDSSNLSREYTRNRLRLEVLPVLEELNPSFLEAVARMTDTLSQDSACLEAQAQALLEACRGPWGLDAAKLRQAHPAVASRVLRLVWQGWGPALEKKHLDALLHCLEGGQVDLPGGVRAQCSQGVLSLERPGDCPAFSVEAPLGTTSLPCGKELVLRVKELPSGEAKPKIHNLLFKNALDYDIITSNLRARSRREGDRFSPAGRRVTKGLKQLFQEQRVPVSQRGRVVLLECGGRLVFCEGVGPAEGFQVTGRTRRALEVEIRPRDLSEERNHTGKGKESI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y445</accession>
    <name>R6Y445_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01938</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30733">
        <property type="protein sequence ID" value="CDD30733"/>
        <property type="gene ID" value="BN815_01938"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="121" mass="12595" checksum="8A1CC46D11C0D913" modified="2013-07-24" version="1">MKRFLKPLWIGLLIGAVELGAVGLMAGVGKWAAFEDLAFGFGIATLLLALLVLFSGRRVQAGMNISPNNAAAQTAFQAQVAYDEAKTMEKLPPLSGNAVRSVAVFVAAAVVLAGFGVSLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4M0</accession>
    <name>R6Y4M0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">Pyruvate kinase</fullName>
            <ecNumber evidence="6 15">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">BN815_00966</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 15">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">Belongs to the pyruvate kinase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="6 15"/>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28815">
        <property type="protein sequence ID" value="CDD28815"/>
        <property type="gene ID" value="BN815_00966"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13 15" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="10 15 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="12 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14 19" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="16">
        <location>
            <begin position="3"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="18">
        <location>
            <begin position="358"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="17">
        <location>
            <begin position="505"/>
            <end position="576"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CDD28815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="581" mass="63047" checksum="A96B280153AF9868" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4T2</accession>
    <name>R6Y4T2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cell wall-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30943">
        <property type="protein sequence ID" value="CDD30943"/>
        <property type="gene ID" value="BN815_02102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="11325" checksum="040717A72CC8208C" modified="2013-07-24" version="1">MVSSMKDVKSSALIPADKIPYANGEPYYVTISATDNATGKPYTSWAKIEVQSPPAVVELARPSSLYITDEVGTLPLTWSLANFNGDGKEFRLVITNNTTCLALPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y589</accession>
    <name>R6Y589_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02256</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TsaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31103">
        <property type="protein sequence ID" value="CDD31103"/>
        <property type="gene ID" value="BN815_02256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003442">
        <property type="entry name" value="T6A_TsaE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02367">
        <property type="entry name" value="TsaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00150">
        <property type="entry name" value="T6A_YjeE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="16137" checksum="C0816BFDDBE73E0D" modified="2013-07-24" version="1">MAEQFITHSPEETSTLAQRLAQDLRGGEVIAFTGGMGAGKTAFTRGLAIGLGAGDVASSPTFALVNEYTGRLTVEHFDMYRVDSWDDLYSTGFFDYLGTDCVLVIEWSENVAGALPEDVIAVDIRPGEGDNDRIITIEGWKGGGTHADTGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5I1</accession>
    <name>R6Y5I1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01062</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29130">
        <property type="protein sequence ID" value="CDD29130"/>
        <property type="gene ID" value="BN815_01062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="52" mass="5921" checksum="27A59598DC714C75" modified="2013-07-24" version="1">MPIVYIPPTNGPFFKVENPIFESKRARKIWLPLLLILGAVTVGGMFIGHFFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6M6</accession>
    <name>R6Y6M6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized HTH-type transcriptional regulator BH0655</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000434">
        <property type="protein sequence ID" value="CDD31608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31608">
        <property type="protein sequence ID" value="CDD31608"/>
        <property type="gene ID" value="BN815_00422"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="9045" checksum="7D8E89F1CDD24C01" modified="2013-07-24" version="1">MEAQPVRFNELQRKIGTITYKALSRELKEMEADGLVRRKEYPQVPPKVEYSLTEKGASLYPIMEQMCQWGTEHSRDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y758</accession>
    <name>R6Y758_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIGR00268 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01243</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000171">
        <property type="protein sequence ID" value="CDD29715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29715">
        <property type="protein sequence ID" value="CDD29715"/>
        <property type="gene ID" value="BN815_01243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01990">
        <property type="entry name" value="Alpha_ANH_like_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005232">
        <property type="entry name" value="LarE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018317">
        <property type="entry name" value="QueC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43169:SF2">
        <property type="entry name" value="PTHR43169:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06508">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006661">
        <property type="entry name" value="PP-lp_UCP006661"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00268">
        <property type="entry name" value="TIGR00268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile and sulfur donor" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR006661-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="27310" checksum="79B35A4E39EBB96A" modified="2013-07-24" version="1">MELRDFFQECPKVALGFSGGVDSAYLLYAALDHGAQVRPYFIKTAFQPQFELEDARRLCAQLGVELTVVELDVLQVPGVVENPPDRCYHCKRALFGRLRQQAQADGYTVLIDGTNASDDAGDRPGMRALGELSVRSPLRECGISKAQVRALSKEAGLFTWDKPAYACLATRVPTGEAITPETLRKVEAAEEALFSLGYSDLRVRVFHGAARLQLPGQQLEQAAKEREAILQALAPWFDTVLLDLKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7H0</accession>
    <name>R6Y7H0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Divergent PAP2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000180">
        <property type="protein sequence ID" value="CDD29865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29865">
        <property type="protein sequence ID" value="CDD29865"/>
        <property type="gene ID" value="BN815_01280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003832">
        <property type="entry name" value="DUF212"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31446">
        <property type="entry name" value="PTHR31446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02681">
        <property type="entry name" value="DUF212"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="17679" checksum="9766473E68775BB6" modified="2013-07-24" version="1">MDFSFLLSNSLINVGVVSWLVAQLIKTALDAVKHRSFNRQRLAGAGGMPSSHSAVCCSVVLTAYFLYGFQSPAFALAFIMALIVMYDATGVRWAAGLHAKAINQIVEYLDSGDVNDQEKNLNDLIPKLNESLGHRVIEVICGALLGIAIAVAGQFIRQGGIHLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y818</accession>
    <name>R6Y818_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Pyruvate, phosphate dikinase</fullName>
            <ecNumber evidence="4 7">2.7.9.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_01358</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + phosphate + pyruvate = AMP + diphosphate + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10756"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.9.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.9.1" evidence="4 7"/>
    <dbReference type="EMBL" id="CBGU010000191">
        <property type="protein sequence ID" value="CDD30055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30055">
        <property type="protein sequence ID" value="CDD30055"/>
        <property type="gene ID" value="BN815_01358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050242">
        <property type="term" value="F:pyruvate, phosphate dikinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006090">
        <property type="term" value="P:pyruvate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002192">
        <property type="entry name" value="PPDK_AMP/ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010121">
        <property type="entry name" value="Pyruvate_phosphate_dikinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22931">
        <property type="entry name" value="PTHR22931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01326">
        <property type="entry name" value="PPDK_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000853">
        <property type="entry name" value="PPDK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01828">
        <property type="entry name" value="pyru_phos_dikin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPDK_N" evidence="12">
        <location>
            <begin position="18"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="PPDK_N" evidence="12">
        <location>
            <begin position="301"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="11">
        <location>
            <begin position="422"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="13">
        <location>
            <begin position="519"/>
            <end position="872"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="8">
        <location>
            <position position="455"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="833"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="562"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="618"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="747"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="768"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="769"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="770"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9 10">
        <location>
            <position position="771"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR000853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000853-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="881" mass="97275" checksum="5D55D3C538B02298" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y884</accession>
    <name>R6Y884_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30130">
        <property type="protein sequence ID" value="CDD30130"/>
        <property type="gene ID" value="BN815_01386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="15"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="28494" checksum="3508B1496A3791F7" modified="2013-07-24" version="1">MKLEKVIAVRNSKTIYRDGSYVIKVFDEGYSKADILNEALNIARVEETGLPIPHVEEVTKIEGKWAIVTDYAEGKTIAQLMAENPDKKDEYLERFVDIQIEIQSKTCPMLNRLKEKMKRKISQTGLDATTRYELDSRLASMPNHNKLCHGDFNPTNVVISPDGESWSVLDWAHATQGNASADAARTYLLFWLGGDIETAEKYLDLFCKKTDTAKQYVQKWLPIVAASQSVKGKAEEREFLMHWVNVVEYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8I8</accession>
    <name>R6Y8I8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Prephenate dehydratase</fullName>
            <shortName evidence="8">PDT</shortName>
            <ecNumber evidence="3 8">4.2.1.51</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pheA</name>
        <name evidence="11" type="ORF">BN815_01483</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="3 8"/>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30240">
        <property type="protein sequence ID" value="CDD30240"/>
        <property type="gene ID" value="BN815_01483"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018528">
        <property type="entry name" value="Preph_deHydtase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00857">
        <property type="entry name" value="PREPHENATE_DEHYDR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00858">
        <property type="entry name" value="PREPHENATE_DEHYDR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 8" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate dehydratase" evidence="9">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="10">
        <location>
            <begin position="90"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="169" mass="18646" checksum="BF093E67A00059D4" modified="2013-07-24" version="1">MSHPQALSQCSEYLEAHGLRPIQWSNTAAAARYVAQEAPAGVAAICSQEAAREYGLTILEEGIQNEAENTTRFILISREAILPQDAGKISLCFALPHVTGSLSGVLQRFAMAGLNLTKIESRPLPGRNFEYDFYLDFTGNLHQPATLELICALQEELPRFSFLGNYSER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8J3</accession>
    <name>R6Y8J3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01488</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30245">
        <property type="protein sequence ID" value="CDD30245"/>
        <property type="gene ID" value="BN815_01488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="9338" checksum="672513E4618BED6C" modified="2013-07-24" version="1">MADKKFEAILTLLVPQVVQLICENYPVDELMASKEFYESKVYSLLEQEDTKLWHFSPLTLFNMYDEEKKTGNFEIPEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8S6</accession>
    <name>R6Y8S6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Major facilitator superfamily transporter MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01564</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30330">
        <property type="protein sequence ID" value="CDD30330"/>
        <property type="gene ID" value="BN815_01564"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="156"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="220"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="258"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="287"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="317"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="355"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="398"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="429" mass="45927" checksum="0E1C3170E9D9FE9F" modified="2013-07-24" version="1">MKQSIKELKTFFVLWSTQSLSQLGSAMTSFALALWLYGETGSALQTALLSVCSYAPYVVMSVFAGALSDRWDKKKTMLACDSLAALSTIAVLVLLKGGWLAPWHMYLLNALSGLMNTVQQPASDVAMTLITPPRWYQKTSGLRSLSNSLVTILNPILATAVFAFAGMDGVIFLDLLTFGVAFLALLGVRLPQGGKDAGVSREPFWATVRSGLGYLGDNRMILLLILFLAGVNFVASAFDAPLPALILPKENGGEAVLGMVSSCAGIATLVGSLLCVVLPAPKNRIRVISLTMLFSLGTENFLLAFSRSPWLWCLGQLIGWLLVPLMNANLDVVLRKTIPVEMQGRVYACRNSLQFCTIPLGLLAGGALIDGVCEPWMASQPPGSLPVLLFGTGKGAGAALLLFLLGLLGVAVCLVFGQLLRKYTFREEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8Z2</accession>
    <name>R6Y8Z2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Spore germination protein (Amino acid permease)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01611</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the amino acid-polyamine-organocation (APC) superfamily. Spore germination protein (SGP) (TC 2.A.3.9) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30390">
        <property type="protein sequence ID" value="CDD30390"/>
        <property type="gene ID" value="BN815_01611"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009847">
        <property type="term" value="P:spore germination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004761">
        <property type="entry name" value="Spore_GerAB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03845">
        <property type="entry name" value="Spore_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0309">Germination</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="24285" checksum="B18275183AD81ACB" modified="2013-07-24" version="1">MVAGAAYGAWRGLETIARAGACLCVLVLAGTALLFGTAAGRFQWENLQPLGDAPALRGAAVFLSHTSLFAEMAVLLPYVRGRRGLGFALWSLGTTVFVAALTLLLAGCLGPYAATQDFPVYTLASLSEVASLQRLEPVFAVLWMAGLLPQVAMGLYACRVCAASLGGNRPPWVIVPAALGMAALGLWAVSSKGVQSAFQDSSLWLTLTLLTGGGVPLVLWLLNKLRRKGARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9R8</accession>
    <name>R6Y9R8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA methyltransferase RsmD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01857</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30650">
        <property type="protein sequence ID" value="CDD30650"/>
        <property type="gene ID" value="BN815_01857"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031167">
        <property type="term" value="P:rRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004398">
        <property type="entry name" value="RNA_MeTrfase_RsmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004553">
        <property type="entry name" value="CHP00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00095">
        <property type="entry name" value="TIGR00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="20447" checksum="A5D9901B09B3A484" modified="2013-07-24" version="1">MRIITGSKRGKKLVTLEGEQVRPTTDRVKESLFNILQFQLEGRKFLDLFAGSGQIGLEALSRGAALCVFVDSAKESIRVVEKNIQSTGLGDRAKVVGSDFAAYLRGSREMFDIAFLDPPYRTGLLEQALPLVAQRMNPGGVILCEHPKDEALPEAAGAFRLHKTYRYGKIMLTSYRQPVEGEDGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Y1</accession>
    <name>R6Y9Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01920</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30715">
        <property type="protein sequence ID" value="CDD30715"/>
        <property type="gene ID" value="BN815_01920"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043765">
        <property type="entry name" value="DUF5711"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18975">
        <property type="entry name" value="DUF5711"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="438" mass="46581" checksum="D2F11D899962E7E8" modified="2013-07-24" version="1">MAKHSEKRGGRKVIRLEDHLPQHQATPAQEPPPPEEASPEEAPQATIEYGEEEAAGEEQKKARQVPKALYRVAVVLLVLVLGLAIWVNRANLTPQNIWNWIQVQITGTGEGDGYPVAITGSSVSEGNFLSAEGNAVALSDTALTILGPSGQELFSQRHSYNQPILKAASGQYLLYNQNSTGYMVVSGTQLHLESSTEQDILAGAIAPNGRFALATQGADGATDVTVYLATGEEQFTYSFAQDYVTALALNADGTWAMVCSVRAQGGQLVSKVTVFDLNSPTPAAEFESQDNLLLAAYWGENGMLYAVGDSALLRARSGELSFSEYGYQGRTPTASQFAGGQCYLSLSAYEHAGACTLLVFRGLEEPVQAQAEERIVSLSVSGGTVGALLDQQLVLFDAATGQELARAEAGGDAKSIALSSESAAYVLGVSEIRRLQVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Y9</accession>
    <name>R6Y9Y9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">L D-transpeptidase catalytic domain./Putative cell wall binding repeat</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01930</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30725">
        <property type="protein sequence ID" value="CDD30725"/>
        <property type="gene ID" value="BN815_01930"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425679" evidence="4">
        <location>
            <begin position="34"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="5">
        <location>
            <begin position="233"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="5">
        <location>
            <begin position="292"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="34"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="49"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="652" mass="70818" checksum="DFB2C2813BCD7E1F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA00</accession>
    <name>R6YA00_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dephospho-CoA kinase</fullName>
            <ecNumber evidence="1">2.7.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Dephosphocoenzyme A kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">coaE</name>
        <name evidence="3" type="ORF">BN815_00753</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3'-dephospho-CoA + ATP = ADP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18245"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CoaE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.24" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28079">
        <property type="protein sequence ID" value="CDD28079"/>
        <property type="gene ID" value="BN815_00753"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004140">
        <property type="term" value="F:dephospho-CoA kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00376">
        <property type="entry name" value="Dephospho_CoA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001977">
        <property type="entry name" value="Depp_CoAkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038385">
        <property type="entry name" value="Sua5/YwlC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005145">
        <property type="entry name" value="Sua5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="YrdC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01121">
        <property type="entry name" value="CoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03481">
        <property type="entry name" value="SUA5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00057">
        <property type="entry name" value="TIGR00057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00152">
        <property type="entry name" value="TIGR00152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51219">
        <property type="entry name" value="DPCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YrdC-like" evidence="2">
        <location>
            <begin position="11"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="350"/>
            <end position="355"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="538" mass="57861" checksum="011726208022280F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA07</accession>
    <name>R6YA07_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoesterase</fullName>
            <ecNumber evidence="2">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01949</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30745">
        <property type="protein sequence ID" value="CDD30745"/>
        <property type="gene ID" value="BN815_01949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020935">
        <property type="entry name" value="PdiEstase_YfcE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000979">
        <property type="entry name" value="Phosphodiesterase_MJ0936/Vps29"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11124">
        <property type="entry name" value="PTHR11124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00040">
        <property type="entry name" value="yfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01269">
        <property type="entry name" value="UPF0025"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="3">
        <location>
            <begin position="1"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="180" mass="19966" checksum="4DA92749B92E1522" modified="2013-07-24" version="1">MKWMIASDIHGSAACCEKLLAAFGREQADRLLLLGDLLYHGPRNDLPQGYAPKEVIAQLSGVKDKVFCVRGNCEAEVDQMVLPFPVLADYCLLEQKGRVVFATHGHHYNLENPPLLQPGDVLLHGHTHIPAKDNSLGFWYLNPGSVSIPKENSPHSYMTLEDGQFLWKDLDGAVYDSLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAA6</accession>
    <name>R6YAA6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02047</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30860">
        <property type="protein sequence ID" value="CDD30860"/>
        <property type="gene ID" value="BN815_02047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="89" mass="9931" checksum="1D96EAA294FEDBC1" modified="2013-07-24" version="1">MVTFYGSHICGGCREAKELFAQKGFSDFQFVEITESTDNLRAFLQLRDHREELRQAREAGMIGIPCFVREDGSITLEAADVLKEAGLGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAF3</accession>
    <name>R6YAF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02067</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30905">
        <property type="protein sequence ID" value="CDD30905"/>
        <property type="gene ID" value="BN815_02067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="143"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="104"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="330" mass="36968" checksum="AEA0528907EC77B0" modified="2013-07-24" version="1">MGKGRYLLKRFIYIIFVFFIISILMFFIYKLMPGDPVTMMLGDVKTSMKPDAYQQLYDQTREELGLNGPLVVQYFRWIGNMLTGNFGYSTQYKTDVINMIGTPMLNTVMLNLVSMLVTFLIAVPLGIATAVRRNTVFDKAVQVVTIVGYSLPSFIIALLAIFAFAVKIPIFPISGVRTAGFEGNSFQMALDTLWHMALPVIVMSISGIGSITRYVRAAMIDVLRMDYIKTARSKGLREKVVIYVHAFRNALIPVVTIATAWVVSLFGGSIVIENVFLWPGLGQTLINGLMQRDFSVVLTMQMFYVVLSLAGNVIMDIAYTIVDPRVRLEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAP9</accession>
    <name>R6YAP9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">ATP synthase subunit c</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">ATP synthase F(0) sector subunit c</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">F-type ATPase subunit c</fullName>
            <shortName evidence="13">F-ATPase subunit c</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Lipid-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">atpE</name>
        <name evidence="15" type="ORF">BN815_02154</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12 13">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="13">Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 13">Belongs to the ATPase C chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30995">
        <property type="protein sequence ID" value="CDD30995"/>
        <property type="gene ID" value="BN815_02154"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01396">
        <property type="entry name" value="ATP_synth_c_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005953">
        <property type="entry name" value="ATP_synth_csu_bac/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000454">
        <property type="entry name" value="ATP_synth_F0_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020537">
        <property type="entry name" value="ATP_synth_F0_csu_DDCD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038662">
        <property type="entry name" value="ATP_synth_F0_csu_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002379">
        <property type="entry name" value="ATPase_proteolipid_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035921">
        <property type="entry name" value="F/V-ATP_Csub_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00137">
        <property type="entry name" value="ATP-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00124">
        <property type="entry name" value="ATPASEC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81333">
        <property type="entry name" value="SSF81333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01260">
        <property type="entry name" value="ATP_synt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00605">
        <property type="entry name" value="ATPASE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 13" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="13" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 13" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 13" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 13" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 13" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="10 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 13" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 13" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="42"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-synt_C" evidence="14">
        <location>
            <begin position="5"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="site" description="Reversibly protonated during proton transport" evidence="13">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00025198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01396"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="71" mass="6960" checksum="B5856DAAB0D1B9F4" modified="2013-07-24" version="1">MSVALGAAIAVLTGIGAGLGISFATAKAVDAIARQPEAADKIQSSLLIGCALAEATAVYGLVIGIMLILFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBA6</accession>
    <name>R6YBA6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DUF2179 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02339</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31195">
        <property type="protein sequence ID" value="CDD31195"/>
        <property type="gene ID" value="BN815_02339"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019264">
        <property type="entry name" value="DUF2179"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10035">
        <property type="entry name" value="DUF2179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006483">
        <property type="entry name" value="Membrane_protein_YitT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="123"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2179" evidence="8">
        <location>
            <begin position="238"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF10035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="297" mass="32540" checksum="0BBD38ECBDBA46CB" modified="2013-07-24" version="1">MATDKAQEPGGKGLFTKANLKAFLLVNLGVLLLTVGVYFFKLPNNFTTGGVSGLAILLSSVIPFLSTATLMGIINVLLLVLGYLFLGKEFGFWTTYCSLMYSLETWVLERVYPMDAPFTNQPLLELCFAMMLPAVGSALMFNYNASSGGTDIVAMILKKYTSISDIGKALFVSDSVIALAACFFFGIETGMFSLLGLFLKAFVVDSVIESINLCKFFSIVTSKPDEICDFIIKDLHHSSTVVDGQGAFSHQDRKVVLTAVRRGEAVRLRQKCKEIDPHSFMFITNTSEIIGKGFRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBA9</accession>
    <name>R6YBA9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative PadR family transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31200">
        <property type="protein sequence ID" value="CDD31200"/>
        <property type="gene ID" value="BN815_02344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="18"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="13407" checksum="F848B1206499985D" modified="2013-07-24" version="1">MEGKYIQQFKKGSLEMILLCLIAQNETYGYEILTQLNQRGGGVLGYAREGTIYPILYRLQEQGLVKTRLAPAAANGGSKKYYSLTDKGRETLEELAAFWREYAACVDGFLQRWKEESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBM8</accession>
    <name>R6YBM8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Fe-ADH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00270</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31335">
        <property type="protein sequence ID" value="CDD31335"/>
        <property type="gene ID" value="BN815_00270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016205">
        <property type="entry name" value="Glycerol_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43616">
        <property type="entry name" value="PTHR43616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000112">
        <property type="entry name" value="Glycerol_dehydrogenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Fe-ADH" evidence="5">
        <location>
            <begin position="11"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="93"/>
            <end position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="115"/>
            <end position="118"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000112-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000112-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="356" mass="38729" checksum="554064DA3CBB173F" modified="2013-07-24" version="1">MNFQETLFPGYTIGEDAYQNIPAVCAPFGKKAAIIGGKRALAAAEEKIRRAVAGSAVEITGTYWYGGEASVENIAKLQPQVAQADMLFAVGGGKAIDTVKVLAHMTHRPFFTFPTIASTCAGCTSLGILYHPDGSLREYSFSKIPPSHIFIDPQIIADAPVKYLWAGMGDTMAKHFECTTSSRGDVPSHSDAMGIALSSMCAEPILRWGQKAMADCQAHQVTYELTEIILSVIVSTGLVSNFVQVDYTTGLAHAIYNGFTILPSTEEHHHLHGEVVSYGILAMLTIDKKYQERDKVLAFNRSIGLPTRLSDIHAKPEDLPAVAEKALQGIDVRKWPYEVTVEMIVKGIQELEAATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBU2</accession>
    <name>R6YBU2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00939</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28744">
        <property type="protein sequence ID" value="CDD28744"/>
        <property type="gene ID" value="BN815_00939"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="46" mass="5234" checksum="A80DFCBA68B11B06" modified="2013-07-24" version="1">MRQEEKTELTRERILQAAMREFGTNGYAATKVNTICCKYGIPKGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCW4</accession>
    <name>R6YCW4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Exonuclease SbcCD C subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000123">
        <property type="protein sequence ID" value="CDD29099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29099">
        <property type="protein sequence ID" value="CDD29099"/>
        <property type="gene ID" value="BN815_01059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="3"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="230"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="401"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="607" mass="65855" checksum="D3BFB2D2471CAC88" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDM4</accession>
    <name>R6YDM4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Carboxylic ester hydrolase</fullName>
            <ecNumber evidence="1">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01140</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-B carboxylesterase/lipase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000145">
        <property type="protein sequence ID" value="CDD29394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="ESTHER" id="9firm-r6ydm4">
        <property type="family name" value="Carb_B_Bacteria"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29394">
        <property type="protein sequence ID" value="CDD29394"/>
        <property type="gene ID" value="BN815_01140"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002018">
        <property type="entry name" value="CarbesteraseB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019826">
        <property type="entry name" value="Carboxylesterase_B_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00135">
        <property type="entry name" value="COesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00122">
        <property type="entry name" value="CARBOXYLESTERASE_B_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="COesterase" evidence="3">
        <location>
            <begin position="10"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="506"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="512"/>
            <end position="526"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU361235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="526" mass="57833" checksum="857984B517FD95B9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEW9</accession>
    <name>R6YEW9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phage integrase SAM-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00511</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27136">
        <property type="protein sequence ID" value="CDD27136"/>
        <property type="gene ID" value="BN815_00511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="4">
        <location>
            <begin position="13"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="278" mass="31972" checksum="7E2CB28A17F869E9" modified="2013-07-24" version="1">MANAQRRESSYYVLARSDIDLYLQDVASRGCKQGTLENYRRSLLNFFDWLPEGKQVSREKVYEYQEYLIGKYTSRTVNMKMTSINGILGFLDLREYQSTVKASVDDTAIQPELSRNEYLRMLSAAKAIGDERLYLIIKLFGTTGIAVQEFDKVTVEAVRSGTIVTFPNRNRLALRIPACVQSELLEYAKEKGVKSGPIFLTREGRPLGRTTLSNMVPHIARYAKVEENKCTPRCLQKLYAETWDTIKSNVNVMLQMTYDKLLEQEQVIYGWQDVQLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF76</accession>
    <name>R6YF76_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01334</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000187">
        <property type="protein sequence ID" value="CDD29994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29994">
        <property type="protein sequence ID" value="CDD29994"/>
        <property type="gene ID" value="BN815_01334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="112" mass="12556" checksum="89A94ABB80C1BED7" modified="2013-07-24" version="1">MELIWGAVGIALAAVGLVELARVGLFWLLRPRRPGSAALVLLPRDGEDCELLIRAGVARLQWMGWPGCRLVCLNPGDDPNVEAICNIFQRRYPNLELCKRPELVYDKENEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFC2</accession>
    <name>R6YFC2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ORF">BN815_01337</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30009">
        <property type="protein sequence ID" value="CDD30009"/>
        <property type="gene ID" value="BN815_01337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="36427" checksum="447882FAE93C226D" modified="2013-07-24" version="1">MIGTDIAIDLGTSRFKVYLDGKGIVVSEPSIIAVDNLTDEVIAIGSDAYDMLGRTSERITVSRPLSNGVISNFSMAEQLISYYLKQISSSRVFMPRVVVSVPCNVTEVEKRAVVEAITAAGVRKVCLIEEPVAAAIGAGVDIAVPHGTMIVDIGEGATDMAVISLNGIAVANSCNIAGASFNDAIVKYVRKKFNLIIGDRTAEEAKIAIGCAYPRKTLLKYTLKGRNAMNGLPETTEMNSDEMIEALIEPAISIVRTVQETLEATPPELLADIFTDGIYLTGGSANLYGFSTLLSKKTKIPVVTFENPENCVVLGAGKAIKYLDKMDTRGHGKLNPLVAYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFJ3</accession>
    <name>R6YFJ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00604</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27366">
        <property type="protein sequence ID" value="CDD27366"/>
        <property type="gene ID" value="BN815_00604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021345">
        <property type="entry name" value="DUF2961"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11175">
        <property type="entry name" value="DUF2961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="342" mass="38932" checksum="A97922ED66C18434" modified="2013-07-24" version="1">MNPYCMISNAKTFAFSAENPTGTRAGGSRGRDCTKLSPTVTIRAGEAVTLVDTDGPGMIQSIWFTGYVGHSFVIRMYWDNCEYPSVEAPISAFFGTAYDENFVDRDGKYAVLNSAQILVAPGRGLNCYWEMPFKKHCRITMENRGEKDRDLYYIITGCHCEVPDEVGYFHASYRQEHPVQKGRSYTIIDGIQGKGQFVGVTLATGMNGNNTCWVEGEARMYIDDDKYPSIHYTGTEDYFCGSYGFGNDVQIKSYQTYSGLYSGMYAIYGDNREFYNGQQRFLLYRFHIADPIHFETKFRMTLDNLGWTGPRYDDYTSCAYWYQTLPSAPLKPLPSDKEMIMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG11</accession>
    <name>R6YG11_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01518</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30284">
        <property type="protein sequence ID" value="CDD30284"/>
        <property type="gene ID" value="BN815_01518"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8261" checksum="3F513E553B83380A" modified="2013-07-24" version="1">MVTKIKELRTQRGMTQQQLADLVHVSSRTIISIEKGQYSPSLMLSYRMAKVFGVTVEELCCLEENLKREDAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG38</accession>
    <name>R6YG38_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glutamine amidotransferase SNO family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01553</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30319">
        <property type="protein sequence ID" value="CDD30319"/>
        <property type="gene ID" value="BN815_01553"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="217" mass="23768" checksum="69FCF1ED1753D2A6" modified="2013-07-24" version="1">MPKIYVYGSRDKLENYANALEGSGLEGLFSLDISQAEECDGLLLPGGGDIDPARYGQLPAGSEAPDLQRDAAELELVSRFLAWGKPMLGICRGVQLLNVALGGNLIQDLPTVSYHRRDPERGDRVHTVSAGEGTFLSSLYGREFAVNSAHHQALGRLAPDLNLAAVSVDDGVPEAVECPEKRIYGVQWHPERMAFAQRRPDTVDGSRIFRFFRGLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGG2</accession>
    <name>R6YGG2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pyruvate-flavodoxin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01671</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30454">
        <property type="protein sequence ID" value="CDD30454"/>
        <property type="gene ID" value="BN815_01671"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="214"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="428" mass="46362" checksum="81F54C4D5FFCF735" modified="2013-07-24" version="1">MTPCPAKNKALQMAPIDSQRDQEAVFEYGINLPAKKEVAEKFKETTVKGSQFKQPLLEFSGACGGCGETPYAKLATQLFGDKMFIANATGCSSIWGGSAPATPYTVNKEGHGPAWENSLFEDNAEFGLGMALAQNAVRGRLAELTEKLIAVEYATAEIKEAGQKWLDTMADRAANDQPSKDFIAALEEGIVPGCKCEACTLASQILKDKDYLAKKSMWILGGDGWAYDIGFGGLDHALASGEDINVLVFDTEVYSNTGGQASKSTPCGSVAQFAATGKATKKKDLAGIAMTYGYVYVAQVAMGADMNQCIKAFSEAESYHGPSIILAYAPCINHGIKGGMGVSQVEEKKAVAAGYWHNFRFDPRRADEGQNPFQLDSKAPTASYRDFIMGEVRYNSLTRSFPDRAEKLFANAEKYAVEKYERLKKMAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGU0</accession>
    <name>R6YGU0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Trypsin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01777</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30564">
        <property type="protein sequence ID" value="CDD30564"/>
        <property type="gene ID" value="BN815_01777"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="177"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="4">
        <location>
            <begin position="468"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="211"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="212"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="573" mass="60221" checksum="CE74337E324FA334" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHH6</accession>
    <name>R6YHH6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30844">
        <property type="protein sequence ID" value="CDD30844"/>
        <property type="gene ID" value="BN815_02031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="161" mass="16891" checksum="487AF0EBD05156EB" modified="2013-07-24" version="1">MAASSTSTVLGLSLWAQTDCPEWADFLQDNQKLEQLAGGHISNSGLHLAAEEKQFLAQRGTVLTYTGTGSGAASVTLPFSPRKITVFAQGKPPVAPRADGGWDVFSQVWLQGEESPYGTGGISLAADTLAAQFSEGAFSGEAGLYHALNRSGVTYVVELEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHI1</accession>
    <name>R6YHI1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TVP38/TMEM64 family membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02036</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TVP38/TMEM64 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30849">
        <property type="protein sequence ID" value="CDD30849"/>
        <property type="gene ID" value="BN815_02036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015414">
        <property type="entry name" value="TMEM64"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12677">
        <property type="entry name" value="PTHR12677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="85"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="228"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU366058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="249" mass="27409" checksum="E8E8317F8F0070AD" modified="2013-07-24" version="1">MEKREQRKKRAVALVCLGLFVAFSLAVCWFVGKPMLQFVSQPEQFRAWVDSHGFWGRLAFLGMVAFQVIIAIVPGEPLEIGAGYAFGAVEGTLLCILGTTLSSVLIFLVVKKFGMRVVTLFVSEEKIRSFTFLQNTRRLNLIAFLLFFIPGTPKDVLTYVVGLTPMRLPTWVLITTVARIPSVITSTIGGDALGTENYLFAVVVFAATALISGVGVLVYRQITKHHQKKEQERETAEKAGHNALDGSAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHJ4</accession>
    <name>R6YHJ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIGR02391 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00006</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000334">
        <property type="protein sequence ID" value="CDD30864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30864">
        <property type="protein sequence ID" value="CDD30864"/>
        <property type="gene ID" value="BN815_00006"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012654">
        <property type="entry name" value="CHP02391"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09509">
        <property type="entry name" value="Hypoth_Ymh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hypoth_Ymh" evidence="1">
        <location>
            <begin position="108"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="237" mass="26886" checksum="635B735B3A91D2BF" modified="2013-07-24" version="1">MKVAYRGQLDAIDQWLRDINNKLTMGISPTFLLNDCQKMQTDLREVAEKIKHEYPFYSQTLPGIGDNLFRPDPFNYGLMTLNVAAFGELFIIVQHLVREPVDMRFWQDIHPRIIEVSKELFCDGHFAAASESAIKEVETRMRELFKEGKPNSPTPKDAAGLIGALLSDNGFYQFCDTSEISGANFRKGVKSIFEGVFTAYRNPSMHANLTCSQREAFERIVQASQMMSILTDGEVKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHZ2</accession>
    <name>R6YHZ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">MazG nucleotide pyrophosphohydrolase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00776</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28186">
        <property type="protein sequence ID" value="CDD28186"/>
        <property type="gene ID" value="BN815_00776"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="107" mass="12374" checksum="174F65DD872BD9CA" modified="2013-07-24" version="1">MEDWKELQRQAYQNKVDHGFNVTDVPMEFCLLYGEVGEAYQAWSRQKPDLGEELADVAIYLLGLAEILDVDLGQEVRRKMDINRRRRYGVVDGVWQRLEDGSPGENA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI30</accession>
    <name>R6YI30_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02203</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31049">
        <property type="protein sequence ID" value="CDD31049"/>
        <property type="gene ID" value="BN815_02203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="212"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="75"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="32655" checksum="E5319CD3B7AD340B" modified="2013-07-24" version="1">MTVAKEISQLRKKQKRREFLMAVPLILFTVLFIVGPMVYMVALSFMTRADTWGVVPEFTLKNYGDIGQPVYLRTFGESLKLAVISTVLIIALGYPFGYFMAKLGPKWKKRTMLLLMIPFWTSSLIRLYGWIIIFRAGGVLDSVLMALHITSEPLKVLYTYPAVVVGMVYALLPFMIFAVYSSAEKLDFSLVEAARDLGASPMKAFLTVSLKLTLPGLLSGVVLTFVPSMGLFFIADLLGGNKVVLVGNLIQTQLMNAHNWPFAAALSVVLLVLTTVIIWLYRKLSGVKDLEGIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIA8</accession>
    <name>R6YIA8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromate transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00807</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28291">
        <property type="protein sequence ID" value="CDD28291"/>
        <property type="gene ID" value="BN815_00807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="70"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="19162" checksum="C27CD68AE7D24246" modified="2013-07-24" version="1">MIYLELFLIFFKIGAFTFGGGYAMLPLIQQEVLSQGWMDLEQLVNFIAVSESTPGPLAVNLSTYIGAETAGLLGALSATIGVVLPSFVIILLVAKFYQAFQTNALVKGCMNGLRPTVVGMIGASLLSVGASAFPAAGGVMQWVLAAVLLAAILVAHWKKVHPILLIVGSAVVGIAAGYAGLLPGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIY5</accession>
    <name>R6YIY5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00315</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31384">
        <property type="protein sequence ID" value="CDD31384"/>
        <property type="gene ID" value="BN815_00315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="58" mass="6647" checksum="5C90F45AAE81FB07" modified="2013-07-24" version="1">MGPYEYVVESIAGEYAYLRRTDIYDNGEPMMIAMALLPDGVDVGTRLRWENLVYSVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ16</accession>
    <name>R6YJ16_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 8">UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase</fullName>
            <ecNumber evidence="7 8">6.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">D-alanyl-D-alanine-adding enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murF</name>
        <name evidence="12" type="ORF">BN815_00338</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7 8">
            <text>ATP + D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine</text>
            <dbReference type="Rhea" id="RHEA:28374"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57822"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7 8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MurCDEF family. MurF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.10" evidence="7 8"/>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31419">
        <property type="protein sequence ID" value="CDD31419"/>
        <property type="gene ID" value="BN815_00338"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047480">
        <property type="term" value="F:UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008766">
        <property type="term" value="F:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02019">
        <property type="entry name" value="MurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035911">
        <property type="entry name" value="MurE/MurF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005863">
        <property type="entry name" value="UDP-N-AcMur_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63418">
        <property type="entry name" value="SSF63418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01143">
        <property type="entry name" value="murF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 7 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="3 7 8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7 8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 12" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="9">
        <location>
            <begin position="30"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="11">
        <location>
            <begin position="107"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="10">
        <location>
            <begin position="317"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="109"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="453" mass="47925" checksum="A8BC16A67C24F492" modified="2013-07-24" version="1">MRVKISDILKATGGKLLCGDEAVAVTSFFTDSRQAKAGAMFVPIRGERADGHDYIPAVLESPAAATFTDHEIPLGEKPIVLVKDCREALQKAAAWYREQFAIPVVGVTGSVGKTTAKEMVAQALTAKFRVLKTAGNQNSQVGVPITVCGLKKDHTAAVVEMGVSMPGEMARIAAVVKPTCAVMTNIGVSHIEFMKTRENILKEKAHIADYIPVDGALFVNGDDDLLPTLKETLGGKVVTFGLGPTCDWRAYGLNEADKGTFFTCLSPAGEKTEVFVPAAGEHNVRNALAAMAVARYLGVPAEDAVRAISAYKAPAMRQQVVEAGGLLIIDDSYNASPDSMRSAIDVLATRPVTGKRAAVLADMLELGDFSQQGHYEVGSYARERGVELLVAVGPLAKGIAAGYGPEAHWFATNEEATAFLQEALHPGDAVLVKGSRGMRTDEIVAALTAGQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ62</accession>
    <name>R6YJ62_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000423">
        <property type="protein sequence ID" value="CDD31459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31459">
        <property type="protein sequence ID" value="CDD31459"/>
        <property type="gene ID" value="BN815_00355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="97" mass="11107" checksum="6596E2219A9D3B22" modified="2013-07-24" version="1">MSEQKKQSFPTYKGKPLVRSGDTIYYGSMKDKYVIKMDIKSKKKVGDLEVADKVTVQLMYTDPEIRTRKQIVKTSEKNGLYLALDIADAWLTRALAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJD2</accession>
    <name>R6YJD2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L36</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmJ</name>
        <name evidence="7" type="ORF">BN815_00390</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL36 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31514">
        <property type="protein sequence ID" value="CDD31514"/>
        <property type="gene ID" value="BN815_00390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00251">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000473">
        <property type="entry name" value="Ribosomal_L36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035977">
        <property type="entry name" value="Ribosomal_L36_sp"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42888">
        <property type="entry name" value="PTHR42888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00444">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57840">
        <property type="entry name" value="SSF57840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01022">
        <property type="entry name" value="rpmJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00828">
        <property type="entry name" value="RIBOSOMAL_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="37" mass="4354" checksum="7F78FBC69C5C8B27" modified="2013-07-24" version="1">MKVRPSVKKMCEKCKIIKRKGKVMVICDNPKHKQRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJK3</accession>
    <name>R6YJK3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha</fullName>
            <shortName evidence="10">ACCase subunit alpha</shortName>
            <shortName evidence="10">Acetyl-CoA carboxylase carboxyltransferase subunit alpha</shortName>
            <ecNumber evidence="10">2.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">accA</name>
        <name evidence="12" type="ORF">BN815_00412</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>acetyl-CoA + N(6)-carboxybiotinyl-L-lysyl-[protein] = malonyl-CoA + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54728"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="EC" id="2.1.3.15"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the AccA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.15" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000430">
        <property type="protein sequence ID" value="CDD31589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31589">
        <property type="protein sequence ID" value="CDD31589"/>
        <property type="gene ID" value="BN815_00412"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016743">
        <property type="term" value="F:carboxyl- or carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00823">
        <property type="entry name" value="AcetylCoA_CT_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001095">
        <property type="entry name" value="Acetyl_CoA_COase_a_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42853">
        <property type="entry name" value="PTHR42853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03255">
        <property type="entry name" value="ACCA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01069">
        <property type="entry name" value="ACCCTRFRASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00513">
        <property type="entry name" value="accA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="11">
        <location>
            <begin position="1"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="28147" checksum="6CD86269A0F75460" modified="2013-07-24" version="1">MSAYEKVLLARAKDRPTGISYIENIFEDFIELHGDRRFADDPAIVGGIATLHGRPVTVIAMEKGKDMRERVRRNFGAPNPEGYRKALRLMEQAEKFHRPVVCFVDTSGAFCGMGAEERGQGQAIAENLTTMAGLKTPIISVLIGEGGSGGALALALSDRVWILENAVYSVISPEGCASILWKDSKKVKDAAESLRLTAQDMLELGVVEQVIPEEKEFSLTYAKLQEELEAALSQLGQLPVEELLEQRYQRFRKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJL8</accession>
    <name>R6YJL8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00420</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31604">
        <property type="protein sequence ID" value="CDD31604"/>
        <property type="gene ID" value="BN815_00420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039532">
        <property type="entry name" value="TetR_C_Firmicutes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14278">
        <property type="entry name" value="TetR_C_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="191" mass="22611" checksum="EE55AC820BD60428" modified="2013-07-24" version="1">MNTKNNSRSRETRERLKEALLRLLARRDILDVTVSRLCQEAGVNRSTFYSHYDSIGDLMEELEQEIGANLMRRFRGDNYDGEHPFSPGHLLPILEHIRDNRDFYRVYLSQSTAQHRLDWAFGQLLEWYVRPLLRGLSVEEEAIAYYFAFFRAGFLALIQQWLQNRCQEEPEVILSYVQNLLRLPEIEGEQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKK8</accession>
    <name>R6YKK8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01052</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29076">
        <property type="protein sequence ID" value="CDD29076"/>
        <property type="gene ID" value="BN815_01052"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="45"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="265"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="576"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="601"/>
            <end position="619"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="623" mass="66170" checksum="356D40AF830E7D66" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM16</accession>
    <name>R6YM16_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Single-stranded DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01206</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29611">
        <property type="protein sequence ID" value="CDD29611"/>
        <property type="gene ID" value="BN815_01206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="111"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="122"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16792" checksum="D469C092DB23A8EB" modified="2013-07-24" version="1">MIKTIITGAVISQGYDNAPALKFSEKGDAVRFRIGKKVYDPKEETGHRWINLPVKVFGSLCDRVKKMKLQAGSYINLLGRLDEDEWTDKAGEKHTTMVLILDDIEYCSGGAKKEPAEEAPQPITSSEPSQEEPSTFTGYVDFGGANPFFGDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNI6</accession>
    <name>R6YNI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01411</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30166">
        <property type="protein sequence ID" value="CDD30166"/>
        <property type="gene ID" value="BN815_01411"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9289" checksum="C3B6A686647213FF" modified="2013-07-24" version="1">MRVRKPWDIPPGSQGCPGAGRQYARKRPRRGSGAKLLLALVTLCNVGLSLALAVLNRQETIRAVRGRQGDEVRVLLSAKKETKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNJ1</accession>
    <name>R6YNJ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Mini-ribonuclease 3</fullName>
            <shortName evidence="2">Mini-3</shortName>
            <shortName evidence="2">Mini-RNase 3</shortName>
            <ecNumber evidence="2">3.1.26.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Mini-RNase III</fullName>
            <shortName evidence="2">Mini-III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mrnC</name>
        <name evidence="4" type="ORF">BN815_01416</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MrnC RNase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30171">
        <property type="protein sequence ID" value="CDD30171"/>
        <property type="gene ID" value="BN815_01416"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01468">
        <property type="entry name" value="RNase_Mini_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008226">
        <property type="entry name" value="Mini3_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00636">
        <property type="entry name" value="Ribonuclease_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005520">
        <property type="entry name" value="UCP005520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="SSF69065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="RNase III" evidence="3">
        <location>
            <begin position="19"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14661" checksum="076F64902FA12F8A" modified="2013-07-24" version="1">MEKLYQGEFSPKGLSPLPLAFVGDGVYELLVREHLLAQGNCPVKKLNSRKVELVRCQFQAQALERLWPRLTGEEQEVALRGRNAHVGHVPKNANVADYHGATALEALFGYLYLGGEVSRLRELFGLVMEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNT2</accession>
    <name>R6YNT2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000213">
        <property type="protein sequence ID" value="CDD30276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30276">
        <property type="protein sequence ID" value="CDD30276"/>
        <property type="gene ID" value="BN815_01510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16563" checksum="345252BA04598DDA" modified="2013-07-24" version="1">MSLSSQLFCVLASFLMAFWIIRGFLLGIKEYPLNTSARKKRKKGQTFKEWFLYTRYREEIPKFFLVLYFLILFVHGAALVACLVLHAVGPFPEMGRKIAIGVYVFDGAWMLLMQLLFWSSKPGMPYERWVKKRGMPPKKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNV3</accession>
    <name>R6YNV3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sulfide dehydrogenase (Flavoprotein) subunit SudB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01535</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="2">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="1">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30301">
        <property type="protein sequence ID" value="CDD30301"/>
        <property type="gene ID" value="BN815_01535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006221">
        <property type="term" value="P:pyrimidine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012165">
        <property type="entry name" value="Cyt_c3_hydrogenase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019480">
        <property type="entry name" value="Dihydroorotate_DH_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10418">
        <property type="entry name" value="DHODB_Fe-S_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006816">
        <property type="entry name" value="Cyc3_hyd_g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="62"/>
            <end position="64"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="237"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR006816-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006816-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="30861" checksum="21F9A744BF176396" modified="2013-07-24" version="1">MYRIVKKQVLNPTVTRMDIEAPLIAKKAEPGQFIILRVDEKGERIPLTVADFDREAGTVTIIFQIVGATTEKLNHLEEGDCLQDFVGPLGRPSETEGLKKVAVIGGGVGCAIAYPVAKKLHQQGAEVHSIVGFRNKDLVILEEEFRAVSDKFVMMTDDGSYGEKGLVTNALEKLIGEGETYDEVIAIGPLVMMKFVTQLTKQHNIKTVVSMNPIMIDGTGMCGGCRLTVGGKTKFACVDGPDFDGFEVDFDEAMARGTMYRDFERHAYEETCNLFQKEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNY8</accession>
    <name>R6YNY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01565</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30331">
        <property type="protein sequence ID" value="CDD30331"/>
        <property type="gene ID" value="BN815_01565"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012878">
        <property type="entry name" value="Glyco_hydro_127"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07944">
        <property type="entry name" value="Glyco_hydro_127"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="621" mass="70865" checksum="131E451FCA340143" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPD4</accession>
    <name>R6YPD4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00136</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000246">
        <property type="protein sequence ID" value="CDD30446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30446">
        <property type="protein sequence ID" value="CDD30446"/>
        <property type="gene ID" value="BN815_00136"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="16"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="20134" checksum="15743C380E0102CF" modified="2013-07-24" version="1">MKFAPQELWTRYGGRLLLREAQGTDAGAVLAYLNRVGGESDNLLFGKDGFPLPVEREAAFLEGQRQKERSILVLGFAGEELVCVASCDALTARERVAHRASVSLTVARDYWGQGIGRGVMEALIAFARQAGLEVLQLEVRADNTRAVALYEHLGFEKLGLYRNFMKVNGQGFDAWYMNLYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPQ6</accession>
    <name>R6YPQ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01754</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30541">
        <property type="protein sequence ID" value="CDD30541"/>
        <property type="gene ID" value="BN815_01754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425737" evidence="2">
        <location>
            <begin position="32"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="7275" checksum="B22208B0337DD636" modified="2013-07-24" version="1">MKKLLAGFLALTLALSMAACSGGGNGSTSSASGTSSASTASTVSEEGTDSTSSAAEDSTADSSVASDSSVASDSSVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPU1</accession>
    <name>R6YPU1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Efflux ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01797</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ABC-4 integral membrane protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30586">
        <property type="protein sequence ID" value="CDD30586"/>
        <property type="gene ID" value="BN815_01797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027022">
        <property type="entry name" value="ABC_permease_BceB-typ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018968">
        <property type="entry name" value="ABC_permease_BceB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="114"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="287"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="532"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="591"/>
            <end position="613"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="625"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="90"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR018968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="662" mass="73527" checksum="5662D4A5C9279EF2" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ39</accession>
    <name>R6YQ39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltrans_SAM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01916</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30711">
        <property type="protein sequence ID" value="CDD30711"/>
        <property type="gene ID" value="BN815_01916"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="71"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32692" checksum="AA17063A5534085C" modified="2013-07-24" version="1">MRAAQWQDYELLDTLDGERLERWGDVLLIRPDPQILWSGEKKDPRWGQAHARYQRSSSGGGKWQNYKKVPPVWKIHWNGLTFRLKTMGFKHTGIFPEQAVNWEFAMEKIRQAGRPPEDPVRVLNLFGYTGAATLACMKAGAMVTHVDASKGMVQWARENAEASGIADRPVRWLVDDCLKFVQREQRRGRTYDGIIMDPPSYGRGPGGEVWKLEEQLYSLIGQCVPILTEKPLFFILNSYTTGLSPSVMEYLLGVQLQKRFGGKVSSDEIGLPVTSTGLVLPCGSTAIYEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRA1</accession>
    <name>R6YRA1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transferase hexapeptide repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02234</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31081">
        <property type="protein sequence ID" value="CDD31081"/>
        <property type="gene ID" value="BN815_02234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="24822" checksum="16BF5BAB8037F520" modified="2013-07-24" version="1">MMKEEEKLYTKELYDLSHTAAAPLLEGTTYPWEALPQIGAFIRELGAGLSLEEYDHPQEDVWIHKTAKVYPNNFIAGPCVIGAGTEVRPGAFIRGNALVGENCVVGNSTELKNVILFDNVQVPHYNYVGDSILGYKSHMGAGAVTSNVKQDKTPVVVHAGFRQLETGLKKFGAMLGDHVEVGCNSVLNPGTVVGRGSHVYPLSMMRGFLPSGMIHKNSGETVPLQERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRB2</accession>
    <name>R6YRB2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02254</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31101">
        <property type="protein sequence ID" value="CDD31101"/>
        <property type="gene ID" value="BN815_02254"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006003">
        <property type="term" value="P:fructose 2,6-bisphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003094">
        <property type="entry name" value="6Pfruct_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00991">
        <property type="entry name" value="6PFRUCTKNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="21170" checksum="21D701A35CE07B63" modified="2013-07-24" version="1">MRIELYAARHGETVANLENRLCGKDTDSPLTQEGVAQARLLGEGLKGVPFDKVYSSPLQRAVATVKIAFGESRKICVDGRLAEIGLGVMDGLTYEEAAEKYPASGMLFFSKPSSYKAPSGGESIEAVMERVSSFLADLESQEGKTVFVQTHGYVLRVLYACTHGKSMAALDESPHYANCDVTHYTYCSGKWELQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRD6</accession>
    <name>R6YRD6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ser/Thr phosphatase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31141">
        <property type="protein sequence ID" value="CDD31141"/>
        <property type="gene ID" value="BN815_02285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014578">
        <property type="entry name" value="Pesterase_CT488"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033094">
        <property type="entry name" value="Pesterase_CT488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="2"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="229" mass="26192" checksum="71CCEBBDFCA0A31B" modified="2013-07-24" version="1">MSLFVIADLHLSLNGEKPMDVFRGWHNYVERLEDNWRRVVQEGDTVVIAGDISWAMKLEDAVQDFQFLHSLPGEKILLKGNHDYWWSTRSKIDQFLAEHGFFDMKVLHNCAYQVEGKALCGTRGWLYNSATAEDKKIVAREAGRLSMSMAEAKKLGGELVAFLHYPPVYDSMECQELLDLLAENQVSRCYFGHIHGQYAAQKALVGEYKGVHMRLVSADYVQFCPVRVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRT2</accession>
    <name>R6YRT2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00234</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31296">
        <property type="protein sequence ID" value="CDD31296"/>
        <property type="gene ID" value="BN815_00234"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="281"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="335"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="41221" checksum="FB263300B78F5708" modified="2013-07-24" version="1">MEYLGKDIPKLGFGLMRLPMLGEEVDLEQTKQMVDKFLEAGFTYFDTAYGYLGGKSEEAVKTALVDRYPRESFQLATKLPAWAGAQTAGEAKEMLQTSLRRTGAGYFDFYLLHNCGDDRTQAFDKFGIWDYALEMKEKGLLKHVGFSFHDKADVLDELLTKHPEMEFVQLQINYADWEDDNVQSCRCYEVARKHNKPVIIMEPVKGGLLADPPETVAQVLKAAAPEKDLPSWALRFAASLEGIITVLSGMSTLEQMEQNLATMKEFSPLSAQEQAVVAQAREALVSLPSIPCTSCQYCVKGCPQGIPIPGVFSAMNTHLIYGNTERAKGNYGFATRGKGKASDCIQCGQCESVCPQHISIIQQLQQAAEVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRW3</accession>
    <name>R6YRW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00256</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000398">
        <property type="protein sequence ID" value="CDD31321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31321">
        <property type="protein sequence ID" value="CDD31321"/>
        <property type="gene ID" value="BN815_00256"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="122" mass="14422" checksum="88A5D8119EC402B8" modified="2013-07-24" version="1">MPEEASLYTEEFSLPPQQPEAYEDSYQAYPEEGYVYEDQAYQEEDYGESYGQYREDYPQDVYYEDDGDAYYGTGEFEYPPQQAQEPTQAPPAQDQATRQFDTEEILREALRYTGEEYQDLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS39</accession>
    <name>R6YS39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MacB_PCD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00317</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31386">
        <property type="protein sequence ID" value="CDD31386"/>
        <property type="gene ID" value="BN815_00317"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="MacB_PCD" evidence="6">
        <location>
            <begin position="59"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="193" mass="21387" checksum="6040CC1642678617" modified="2013-07-24" version="1">MFRSRIPFLGFAFFGSQPWDKTAPTKPKLNNTEQYGYAKSQQLHFLPGAGDNTASNMGQVTAVRDSQLLDMFREEEYTLLEGRHIQPEDSFAVLLSKELTDKNGLSVGDSVTMYDLDTDSENTFTIVGIFGGTEGMTKDAMMADGIAANQGYIDGNSYQKMWNETTLELGSLDVYVDSAQRIQQVLEAIQALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9Q7</accession>
    <name>R6Z9Q7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00543</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000025">
        <property type="protein sequence ID" value="CDD27217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27217">
        <property type="protein sequence ID" value="CDD27217"/>
        <property type="gene ID" value="BN815_00543"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="78"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="74"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="31383" checksum="0AE7C0C0EE5EDACE" modified="2013-07-24" version="1">MKHKRTKVGETILAYAVLIVLSFLCLFFFYILLVNASRSHAELQRGFSWLPGGYFLENLKAVATDGNFPMFKGILNSLIVSTCSAALCTYFSALTAYGLYAYNFKFKKLAFTFIMAILVMPTQVTAMGFLRLMTNMGLYDTLWPLILPSIASPSVFYFMYSYLESSLPLSLVEAARIDGSGEFMTFNRIVLPIMKPAVAVQAIFSFVGSWNNYFVPALIIQSKDKMTVPILIATLRGADYMNFDMGKIYMMITVAIVPIIIVYLLLSKYIIAGITLGGVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAQ9</accession>
    <name>R6ZAQ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myosin-crossreactive antigen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00645</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27527">
        <property type="protein sequence ID" value="CDD27527"/>
        <property type="gene ID" value="BN815_00645"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050151">
        <property type="term" value="F:oleate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010354">
        <property type="entry name" value="Oleate_hydratase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37417">
        <property type="entry name" value="PTHR37417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06100">
        <property type="entry name" value="MCRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="597" mass="68363" checksum="4DEC6116B0D0BBCC" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAX6</accession>
    <name>R6ZAX6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-dehydro-3-deoxy-phosphogluconate aldolase</fullName>
            <ecNumber evidence="3">4.1.2.14</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00675</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-dehydro-3-deoxy-6-phospho-D-gluconate = D-glyceraldehyde 3-phosphate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:17089"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:57569"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.1.2.14"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the KHG/KDPG aldolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.14" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27622">
        <property type="protein sequence ID" value="CDD27622"/>
        <property type="gene ID" value="BN815_00675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008675">
        <property type="term" value="F:2-dehydro-3-deoxy-phosphogluconate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00452">
        <property type="entry name" value="KDPG_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000887">
        <property type="entry name" value="Aldlse_KDPG_KHG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031337">
        <property type="entry name" value="KDPG/KHG_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031338">
        <property type="entry name" value="KDPG/KHG_AS_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30246">
        <property type="entry name" value="PTHR30246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01081">
        <property type="entry name" value="Aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01182">
        <property type="entry name" value="eda"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00159">
        <property type="entry name" value="ALDOLASE_KDPG_KHG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00160">
        <property type="entry name" value="ALDOLASE_KDPG_KHG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="22275" checksum="F008965AF75CE1D7" modified="2013-07-24" version="1">MANVEQVLRDTGVIPVIKLEDEQKAVSLGRALLEGGIPAAEVTFRTPAAAKSIENIAKALPEMFVCAGTVLSVEQAKLAVDCGAKAVISPGTNRDVVEWCVKNNVPVYPGCATPSEVEAAMGMGLTTVKLFPAEVVGGVKMLQALYGPYRGVKFMPTGGISPSNVKEYLSQPNVIACGGSWLCPAGDINEGSWAAITQRARECIALVQEVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZC68</accession>
    <name>R6ZC68_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">M18 family aminopeptidase</fullName>
            <ecNumber evidence="10">3.4.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00757</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the peptidase M18 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.-" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28087">
        <property type="protein sequence ID" value="CDD28087"/>
        <property type="gene ID" value="BN815_00757"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001948">
        <property type="entry name" value="Peptidase_M18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023358">
        <property type="entry name" value="Peptidase_M18_dom2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28570">
        <property type="entry name" value="PTHR28570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02127">
        <property type="entry name" value="Peptidase_M18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00932">
        <property type="entry name" value="AMINO1PTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9 11" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4 9" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="470" mass="51125" checksum="AC45EAB9EAE310E1" modified="2013-07-24" version="1">MSKKEEKIDAKELAKKLLNDRTHGAAKVGAKELEKAGEFAEGYKSFMDAAKTEREAVTWAVQAAEEAGFVPFDPAKKYKAGDKVYYNNRGKAMCLAVIGKKGAKEGVRIAAAHIDSPRIDLKPIPLYEANELALLKTHYYGGIKKYQWTAIPLSLHGKIVRKDGEEITVRIGEKEGEPQFTITDILPHLGKDQMAKTLGEAISGEDMNVLAGSLPLTGGEGEQLFKLNIMNILHQQYGIVESDLISAELEFVPAFKAVDIGFDRSMIGAYGHDDRVCAYPILEAIFQCKTPEYTCITVLADKEEIGSVGNTGLASEYLNYFVADLAAAEGLEARHVYTKSTCLSADVTAAFDPNYAYAYEAGNSTFLNRGVGLSKYTGSRGKGGSNDANAEFVGQVRKIFDEADVLWQIGELGKVDQGGGGTVALDISRMNADVIDVGVPVLSMHSPFEVVSKLDVYMAYKGFKAYFEAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCF7</accession>
    <name>R6ZCF7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-aminoacyl-tRNA deacylase</fullName>
            <shortName evidence="1">DTD</shortName>
            <ecNumber evidence="1">3.1.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Gly-tRNA(Ala) deacylase</fullName>
            <ecNumber evidence="1">3.1.1.-</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dtd</name>
        <name evidence="2" type="ORF">BN815_00774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a D-aminoacyl-tRNA + H2O = a D-alpha-amino acid + a tRNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13953"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:10124"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:79333"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-tRNA(Ala) + H2O = glycine + H(+) + tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:53744"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:13640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DTD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.96" evidence="1"/>
    <dbReference type="EC" id="3.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28182">
        <property type="protein sequence ID" value="CDD28182"/>
        <property type="gene ID" value="BN815_00774"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106026">
        <property type="term" value="F:Gly-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043908">
        <property type="term" value="F:Ser(Gly)-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019478">
        <property type="term" value="P:D-amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00518">
        <property type="entry name" value="Deacylase_Dtd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003732">
        <property type="entry name" value="Daa-tRNA_deacyls_DTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023509">
        <property type="entry name" value="DTD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10472">
        <property type="entry name" value="PTHR10472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02580">
        <property type="entry name" value="Tyr_Deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69500">
        <property type="entry name" value="SSF69500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00256">
        <property type="entry name" value="TIGR00256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0820">tRNA-binding</keyword>
    <feature type="short sequence motif" description="Gly-cisPro motif, important for rejection of L-amino acids" evidence="1">
        <location>
            <begin position="138"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="16617" checksum="66B510C266309D02" modified="2013-07-24" version="1">MRAVIQRVSRAEITIDHQETREIGQGLVVFLGVMKGDTEAQAEFLAEKAQGLRIFTDENGKMNLSLEDIGGEMLVVSNFTLGTDCKKGRRPSFDMAAPPAEADRLYRHFVERARGLGIPKVETGEFGAHMDVLCANDGPVNIIIDTERIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDH1</accession>
    <name>R6ZDH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative nucleoid occlusion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00874</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28552">
        <property type="protein sequence ID" value="CDD28552"/>
        <property type="gene ID" value="BN815_00874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="3">
        <location>
            <begin position="10"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="277" mass="31396" checksum="28EDDD47C70B6509" modified="2013-07-24" version="1">MFFKDKLKLVKLPVSRILPNPAQPRKDFDQAALESLAQSIKENGLLQPVTVRRENGGYTLIAGERRLRACKLAGLKEIPAIVTECAPEDSAVLALLENLQRKDLQMFEQANALVNLLREWHITQEEAAKRLGISQSYLANKLRLLKLSPEEQSEILEYKLTERHARALLRVDDGSLRQRLRGDDASLRQRLLRQVGERGLTVAQTEELVTAAIQPKPTRGKPKRTFVAKDIRLFINTIDHAVDAMKTAGIQAKAEKKETEEYIECTVRIPKNHRVQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDI4</accession>
    <name>R6ZDI4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 15">Inosine-5'-monophosphate dehydrogenase</fullName>
            <shortName evidence="8">IMP dehydrogenase</shortName>
            <shortName evidence="8">IMPD</shortName>
            <shortName evidence="8">IMPDH</shortName>
            <ecNumber evidence="8 15">1.1.1.205</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">guaB</name>
        <name evidence="17" type="ORF">BN815_00879</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 15">
            <text>H2O + IMP + NAD(+) = H(+) + NADH + XMP</text>
            <dbReference type="Rhea" id="RHEA:11708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="EC" id="1.1.1.205"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="8">Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 15">Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 14">Belongs to the IMPDH/GMPR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.205" evidence="8 15"/>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28572">
        <property type="protein sequence ID" value="CDD28572"/>
        <property type="gene ID" value="BN815_00879"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00601">
        <property type="reaction ID" value="UER00295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003938">
        <property type="term" value="F:IMP dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006177">
        <property type="term" value="P:GMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00381">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01964">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005990">
        <property type="entry name" value="IMP_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015875">
        <property type="entry name" value="IMP_DH/GMP_Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001093">
        <property type="entry name" value="IMP_DH_GMPRt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11911">
        <property type="entry name" value="PTHR11911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00478">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000130">
        <property type="entry name" value="IMPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01302">
        <property type="entry name" value="IMP_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00487">
        <property type="entry name" value="IMP_DH_GMP_RED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3 8 15" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="2 8 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11 15" id="KW-0520">NAD</keyword>
    <keyword evidence="6 8 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 8 12" id="KW-0630">Potassium</keyword>
    <keyword evidence="4 8 15" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="16">
        <location>
            <begin position="96"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="16">
        <location>
            <begin position="157"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8 10">
        <location>
            <begin position="341"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8 10">
        <location>
            <begin position="364"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="8 10">
        <location>
            <begin position="388"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="active site" description="Thioimidate intermediate" evidence="8 9">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="404"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="251"/>
            <end position="253"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <begin position="301"/>
            <end position="303"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 12">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 12">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 12">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="416"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="470"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="471"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="472"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <note>ligand shared between two tetrameric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000130-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD28572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="489" mass="52732" checksum="62873F5A7E4BAE5B" modified="2013-07-24" version="1">MEYREKFLKEGLTYDDVLLIPAESHVLPSEVDFSTNLTKTIRLNTPIMTAAMDTVTESDMAIAIAREGGIGIIHKNMSIERQADQVDRVKRSENGVIVNPFFLAPDNLVKEADEIMGRFKISGVPICEDGVLVGIITNRDMRFMEGSDFDQPIKNVMTKDNLVTAPVGTTLKDAQEILRRHRIEKLPIVDEHMRLKGLITIKDIEKAVQYPNSARDKGGRLLCGAAIGATKDVLDRVAALIEAQVDVVVLDSAHGHNSGILDAVRLVKKHYPDLQLIAGNVATAEGTKALIDAGADCVKVGIGPGSICTTRVVAGIGVPQITAVFDAAQEAAKYGIPVIADGGIKYSGDIVKALAAGANVVMLGSMVAGCKEAPGEYELYQGRQFKVYRGMGSLGAMGKGSSDRYFQGEQKKFVPEGVEGRVPYKGPLADTIFQMVGGLRSGMGYTGCATIQELHDKAQFVRITNAGLKESHPHDIQITKEAPNYSIHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDV1</accession>
    <name>R6ZDV1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28707">
        <property type="protein sequence ID" value="CDD28707"/>
        <property type="gene ID" value="BN815_00926"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="20"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="29733" checksum="609891FDC3359A90" modified="2013-07-24" version="1">MRGLYPGLCKPAFWDCPGRRLGSRSGGAAGQGGQPPGSRLRYHPDPGPCAGCGPGAPHGPPRRALRGRPHLGGGYGHRLSQGFAGGKDRRAGDRGSCQALPGLPQLPGRHPWHPQLDHLPGAAGGLRQALPGGHCQGRAEGRDALLLPHRWGTGPRLEKAAHRAAAGGDGLCGRHSQRLQRRSPHPRGPARGGDHGGGRPAVHGRGHGRGAAQRARLQRQSGTAFRHGQGGHGYLGPSGAAGAHSQVPHRAVRAPLCPGGGGTGQRLLRRGRPGADPPLGPREPGAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF13</accession>
    <name>R6ZF13_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01053</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29077">
        <property type="protein sequence ID" value="CDD29077"/>
        <property type="gene ID" value="BN815_01053"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003735">
        <property type="entry name" value="Metal_Tscrpt_repr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038390">
        <property type="entry name" value="Metal_Tscrpt_repr_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33677">
        <property type="entry name" value="PTHR33677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02583">
        <property type="entry name" value="Trns_repr_metal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="10181" checksum="E28B2649B8B545A1" modified="2013-07-24" version="1">MRQCMDADNLHRRLKKIIGQVQAIDRMIDQDVPCEDILAQINAAKSALHGCGKVVLEGHIQHCVRDGLEHGDAEQTIEKFTKAVERFANMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHV0</accession>
    <name>R6ZHV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH LytTR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30017">
        <property type="protein sequence ID" value="CDD30017"/>
        <property type="gene ID" value="BN815_01343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH LytTR-type" evidence="1">
        <location>
            <begin position="41"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="16736" checksum="C854DCEF3E3BE976" modified="2013-07-24" version="1">MRIILEEDPAWEEVEVTIRCKEVTPQVAGLVASLRRFDHRLTGEREGKTYLLEAGELFYIESVEKRTFLYTRDGVFETPLRLYELEERLAPWDFVRVSKAMIVNFGKTQSISPDFAGRLQLTLENGEKVGVSRKYAPAIKGKLGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI15</accession>
    <name>R6ZI15_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP synthase subunit F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01367</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the V-ATPase F subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30087">
        <property type="protein sequence ID" value="CDD30087"/>
        <property type="gene ID" value="BN815_01367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008218">
        <property type="entry name" value="ATPase_V1-cplx_f_g_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036906">
        <property type="entry name" value="ATPase_V1_fsu_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01990">
        <property type="entry name" value="ATP-synt_F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159468">
        <property type="entry name" value="SSF159468"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11411" checksum="6383C2E2C08921C0" modified="2013-07-24" version="1">MYKIAVLGDRDSIYGFGALGLEVFPVEEAEAGARLIRRLAEENYAVLYVTEALCAQIPEELDRLREAPLPAVVPIPGISGNTGLGLRQVKRSVEQAVGSDILANES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIJ7</accession>
    <name>R6ZIJ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000213">
        <property type="protein sequence ID" value="CDD30277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30277">
        <property type="protein sequence ID" value="CDD30277"/>
        <property type="gene ID" value="BN815_01511"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031584">
        <property type="entry name" value="Put_ABC_export"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16962">
        <property type="entry name" value="ABC_export"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="226"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="321" mass="34868" checksum="F3220352EE722B68" modified="2013-07-24" version="1">MLEKGAAFFATLPGLLFPVSGWAAGLIGGIFAFDWLQAVLCGGLLAALFAVLLGLILTCKNNYYEDVLSTAETAQSAVTAQKEGQLNEVVPKNVKVGKTGLGKGWGASAIYHKHRVENRRSGVFLFSNMSLIFMAVIIGCSLFMRETGMVGIFAFATYMQLFTVALGRFNRELIKPYIYLIPEPPLKKLLYAIKESLLTDALEAVVLFLILGVIVGASPVETVCCMVARVSFALLFTAGNVCVERVFGMVRSKTLIFLFYFLVLLVMAIPGIAACVVFAIWVPAWEVAAGLLAMTVVNAAIAVLVLWLCRNLLQYAELNSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ45</accession>
    <name>R6ZJ45_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000259">
        <property type="protein sequence ID" value="CDD30482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30482">
        <property type="protein sequence ID" value="CDD30482"/>
        <property type="gene ID" value="BN815_01698"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="317"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="378" mass="43312" checksum="28B8E33B5F360FA1" modified="2013-07-24" version="1">MDLVVKALTLVLIGWAVRGVLALLHRPRQAKSQMVIWSKLMLVIGILGCSLCLLLAIWGYVDRKTPWAALPGLGLSFLLGGDLIVGYFHCRISYGEQGFTVKNFWGIKRTYSYDQITGMRGTRKSRTIRLYVEKQVVKLEDFAIGREEFLDFAKKKYRTAHDGEAIPMLPPRKDIFNGNLENPEEPILIDSVLLGLLFLAICFIVGWLLMYLYQTSDRGLSTVTLSFQRYEMEGEDLFLYEEEDLVPYVIPSVEEKVPLQSYLWRALERGDSFEVSFTKNVTGERAAHTVVSLKNGGFTFLARQERDSQTVTTALQLLGIFGGFFVFMAASVALSVYIARNPQKFSRWFVTTFGFREWAFREGVLREERPKHPKRRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ99</accession>
    <name>R6ZJ99_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Single-stranded DNA-binding protein</fullName>
            <shortName evidence="2">SSB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01730</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30517">
        <property type="protein sequence ID" value="CDD30517"/>
        <property type="gene ID" value="BN815_01730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00984">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10302">
        <property type="entry name" value="PTHR10302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00621">
        <property type="entry name" value="ssb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="103"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Important for interaction with partner proteins" evidence="2">
        <location>
            <begin position="158"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="163" mass="17713" checksum="0F79D5C3207DC8AC" modified="2013-07-24" version="1">MLNVAAIVGRLAADPELRHTASGVAVTSFTLAVSRNYSRQGEERQTDWIDVVAWRNTAEFVCKYFTKGQMMAVTGSIQTRSYEDRSGNKRKAVEIQANDVSFVGSKRDNAGGDDFGQSYGQSYARPSAPAPQQPAAFSEPAPAYSSGSSEDFEEILGDDDLPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJQ9</accession>
    <name>R6ZJQ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000306">
        <property type="protein sequence ID" value="CDD30687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30687">
        <property type="protein sequence ID" value="CDD30687"/>
        <property type="gene ID" value="BN815_01892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13887" checksum="81E628F978E1D572" modified="2013-07-24" version="1">MHIVISNQSGKPIYEQIAEQVKALIISGELGEGDALPSMRLLAKELRISVITTKRAYEELEREGFLYSVPGKGSFVAGKNTEFLKEEQLRRVEEHLQEAVKAAQLCGMEKQELVETLNVLWEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJS4</accession>
    <name>R6ZJS4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Replicative DNA helicase</fullName>
            <ecNumber evidence="3 12">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_01907</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 12"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30702">
        <property type="protein sequence ID" value="CDD30702"/>
        <property type="gene ID" value="BN815_01907"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00984">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036185">
        <property type="entry name" value="DNA_heli_DnaB-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007692">
        <property type="entry name" value="DNA_helicase_DnaB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007693">
        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00772">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48024">
        <property type="entry name" value="SSF48024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00665">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 12 14" id="KW-0347">Helicase</keyword>
    <keyword evidence="8 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 12" id="KW-0639">Primosome</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="13">
        <location>
            <begin position="184"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU362085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="455" mass="51210" checksum="525807630EAC9F96" modified="2013-07-24" version="1">MDFDTQAQPGMSMPFSLEAEQSVLGAVLLEPSCLSTVVDILPRAEYFYAVNNRMIYAAMMEMFALGQPVDFVTVLERLKEEKDFDEATGKVYLTQLAQLVPAISHVESYARIVRDKYELRTLMQAARGILSDASAGEQETSLLLDSAEKRIYDIRRGKSDEGLQPVREILLETFDRLDKLNSADRDKYKGLPTGIKELDNTITGLNRSDLIVLAARPGVGKTSLGLNIARHVAVTAKRRVAFFSLEMGREQLASRLLASEALVEGTKLRSGDLTEAEWARLIEAGDILRRADLYFDDSPGLTVLEMKGKLRRLDHVDLVIVDYLQLMTGTKRTDNRVNEISEITRNLKVMAKELNVPVMALSQLRRPTERTKDHRPGLSELRDSGSIEQDADIVIFLHREAYNATSEGGQVTEDMDQNAAEIIVAKNRHGETKPIPVHWQGEYMRYTSREVIRHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK78</accession>
    <name>R6ZK78_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PDDEXK_1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00004</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000334">
        <property type="protein sequence ID" value="CDD30862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30862">
        <property type="protein sequence ID" value="CDD30862"/>
        <property type="gene ID" value="BN815_00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PDDEXK_1" evidence="3">
        <location>
            <begin position="94"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="339" mass="38418" checksum="65564C97B52E8A26" modified="2013-07-24" version="1">MESDECTGRVSVRNNSPEAQERFDEELRLWYVALTRSKKYLFISGIECARTHTSQFASNIQHDYVCTDPQTVFPRPNRIAPSVPIDATILPTNFSDLRYYWDCPKDYLLRRLMGFSPGVNESYGYGQQIHNLLALLHETLPNSNVDDAWIESQVDGHFNLRYTRGEPLEAMKAAAKRILKNYLHDDPELQSKVLHAEKPFEFIIGDAMISGTIDLLNKADPTDENEAKVEIVDFKTGKSGDDLAAAERRSHVQQQLQMYAIATQDALGLEPLKATAHFLYANQPHIKEDVELSEEQMENMKHQIANTVTAIKQGRFPLCASKTRCTSCDFKAICNGSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK90</accession>
    <name>R6ZK90_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6487 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30877">
        <property type="protein sequence ID" value="CDD30877"/>
        <property type="gene ID" value="BN815_00180"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045504">
        <property type="entry name" value="DUF6487"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20097">
        <property type="entry name" value="DUF6487"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6487" evidence="1">
        <location>
            <begin position="3"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="8339" checksum="85F32B8A60743410" modified="2013-07-24" version="1">MKCPACGREMEPGYLQSDRPVVFTTRRPSLSGVAFPRIPRGQDLHLTNDAYSPCACPAWHCPQCRHILVERQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKT0</accession>
    <name>R6ZKT0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PF07136 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31042">
        <property type="protein sequence ID" value="CDD31042"/>
        <property type="gene ID" value="BN815_02196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010787">
        <property type="entry name" value="DUF1385"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07136">
        <property type="entry name" value="DUF1385"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="156"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="314" mass="35001" checksum="7161E3A4922105C0" modified="2013-07-24" version="1">MENPKKITTIGGQALMEGIMMVGPKRTVAAFCDEEGNISTEEISVPRLTKQFPLLGKPFIRGIFALADSFRMGYKALSLSADKLTEGDEEEELTGLDKWLNDHLGEKITGVIMAAASVLGIALAVVLFFMLPTVLFNLLENAVPADIAGWRSIFEGVLRIGLFVGYVALIALVPDIKRTFQYHGAEHKTIFCYEADLPLTVENVRKQRRFHPRCGTSFMILMLVIGIIVGFFIPFSNPFLRTFTKLLCIPVIMNIGYEVQKACARHDNWFTRAVVAPGLWMQRLTVKEPDDKMMEAAITAMEAVIPENGEDLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKX4</accession>
    <name>R6ZKX4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidoglycan-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02250</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31097">
        <property type="protein sequence ID" value="CDD31097"/>
        <property type="gene ID" value="BN815_02250"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004427090" evidence="2">
        <location>
            <begin position="32"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="3">
        <location>
            <begin position="59"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="401"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="408"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="458" mass="47523" checksum="48FE2284A4987876" modified="2013-07-24" version="1">MMRIGSAIRRVLALALCVLLGCGAFAGCSQVDDIVSNVTAAGVFPVEVNGVTISSRPSRVVVLSPSLADVILALGCETQLAGASEGCTQSALDELEKVSADSVEAIQALQPDLVLVDPNSSGAQSALEEAGVTVLSVEPATDRSDFERLYSQVSSALLGGEAGYDEGIATAQDIFITLDNINRIVPKDTITTACYLYDLDGSAVTGDMFGSTIMSYAGVTNVFESLEGGTYDFQSLEIANPNVIFCAPGLKEQIESDSRFADFQAVQQGNVVEMDESLMEWQGRTIVETAYEISAAAFPQLLESSSSVSDPTQDIESQVSSALEAQAQYETLEQGDQGDSVQALQERLTQLGYLTDPYDGMYGSTTADCVSRFQTANGLEATGIADPATQAALFASGALREDGTPLPEESGESSTSQSSSSASESSSSASESSASESSSQASSASSGSESSSQASASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMB5</accession>
    <name>R6ZMB5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Biotin carboxylase</fullName>
            <ecNumber evidence="5">6.3.4.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Acetyl-coenzyme A carboxylase biotin carboxylase subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00410</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>ATP + hydrogencarbonate + N(6)-biotinyl-L-lysyl-[protein] = ADP + H(+) + N(6)-carboxybiotinyl-L-lysyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13501"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.14"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000430">
        <property type="protein sequence ID" value="CDD31587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31587">
        <property type="protein sequence ID" value="CDD31587"/>
        <property type="gene ID" value="BN815_00410"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004549">
        <property type="entry name" value="Acetyl_CoA_COase_biotin_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00514">
        <property type="entry name" value="accC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0092">Biotin</keyword>
    <keyword evidence="5" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="1 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="2 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="7">
        <location>
            <begin position="1"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="120"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU365063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="440" mass="48563" checksum="4BA7320F9A3D08F1" modified="2013-07-24" version="1">MFTKILIANRGEIAIRIIRACKEMGISTVAVYSEADRESLHVALADEAICIGGPRADDSYLNGQRIVSAALATHAQAIHPGYGFLSENAGFAALCKEHGVVFIGPPAEVISNMGDKDAARRLMKQNNVPTTPGTDILRNAQEAKEAAANIGYPVLIKASAGGGGKGIRLIEREEDMERAFETASSEAEKAFGDGRMYMEKYLDPVKHIEVQLLADEEGNIVCLGERECSIQRNNQKLIEESPSPGVSPEIRRELMATAARAAKASGYVNAGTVEFLMDKDKNFYFMEMNTRLQVEHPVSELVTGIDIVKWQIRIAAGVPLDFTQEDIHVQGAAIECRINAKGPGKVGFFHTPGGPWVRFDTFLYQGYEIPPYYDSMLGKMIVYSSTREEAIRKMTAALSELVIGGTLNNIEDQIDIIRDERFKKGDYYTDFMKHFQRPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTX1</accession>
    <name>R6XTX1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00528</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27173">
        <property type="protein sequence ID" value="CDD27173"/>
        <property type="gene ID" value="BN815_00528"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="8">
        <location>
            <begin position="19"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="9">
        <location>
            <begin position="340"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="694"/>
            <end position="734"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="787" mass="88353" checksum="C007437D45C4815E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU42</accession>
    <name>R6XU42_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Coproporphyrinogen dehydrogenase HemZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00557</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27253">
        <property type="protein sequence ID" value="CDD27253"/>
        <property type="gene ID" value="BN815_00557"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023995">
        <property type="entry name" value="HemZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932:SF1">
        <property type="entry name" value="PTHR13932:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00310">
        <property type="entry name" value="oxygen-independent_coproporphy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03994">
        <property type="entry name" value="rSAM_HemZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="157"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="493" mass="54837" checksum="2FC22D1E385FECE3" modified="2013-07-24" version="1">MELFLSGSSYRYECENLCRLFFPYSPVKVEAWDQPGPPSPGEGPWAWAVIEGGPGAYSYQVTVSDGERALTRQAGAPALEEYSMTDLLYNAFVELTGNHPAWGMLTGIHPVKLLRQYVEERGEEEGLAHFQGHCYVTPPKAELAHRVLRAQGPAVEALGENDFSLYVSIPFCPTRCAYCSFVSQDMEHAKKLMDPYFQLLLEEIEKVAQVTKDLGLSLVSVYIGGGTPTTLSAQQLSALCGKIRQVFDFSRCGEFTVEAGRPDTITQEKLLALREADISRISINPQSLSDQVLRNIGRRHTAQDVVEAFRLAQRLGFSNINADLIVGLPGDDLTSFQRTLDGVIQLGASNVTVHSLAIKRSAWLNSPGGDLSAHSNAQEAAAMVDYSIQRLTQEGFEPYYLYRQTRMAGNLENTGWAKPGSICRYNIYTMDESNTVIACGAGGVSKVKDPYSGRLERIFNFKLPLEYINRFPEILQRKDGVTALYEQFRQRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUG0</accession>
    <name>R6XUG0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Efflux transporter RND family MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27368">
        <property type="protein sequence ID" value="CDD27368"/>
        <property type="gene ID" value="BN815_00605"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="21418" checksum="EBE147ED2329840B" modified="2013-07-24" version="1">MFVYNVKWYGNVDTTISGSGNLTPVSQQTMAVEQPVTVTAVNYAAGDNVEEGTVIATAEDAQGGSIDYTAPYDCVLLELPVSSGDELEAGGEVAMVMGTEGFTMGIAVDEQDISAVAVGQEVAFTVDAVDGEYIRLWRSLHNHLFVRRQRFQWCGWQRLIPVCAGSIVIVSRPGPSQIVQRHAEFGLKMDRVSDVEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XW26</accession>
    <name>R6XW26_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000072">
        <property type="protein sequence ID" value="CDD27948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27948">
        <property type="protein sequence ID" value="CDD27948"/>
        <property type="gene ID" value="BN815_00734"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="14"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="28301" checksum="0210F1FCD65544A2" modified="2013-07-24" version="1">MHFVQCGNPGAKTVIFLHGGGLSTWNFRDEAEILQGRFHILIPILDGHHGSDQKFTSIEENAARIIRYIDSRFQGQVFLIAGLSLGGQVLVEMLSQRNNICEFAMIESTLALPTNATAMLVKPVFSLFYPLVKKRWYAKLQCKALHIRDSLFEDYFRDSSQIKKDDMIAFLKANAAYTVKDSLSHCCAKTLILVGGKERGIMKKSAKLLRETIPGSVLEEMPGYYHGDFSLNHPQEFSRKLLDWISDRTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY83</accession>
    <name>R6XY83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00931</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28718">
        <property type="protein sequence ID" value="CDD28718"/>
        <property type="gene ID" value="BN815_00931"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003445">
        <property type="entry name" value="Cat_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02386">
        <property type="entry name" value="TrkH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="313"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="422"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="462" mass="49452" checksum="73DDD072553A76FE" modified="2013-07-24" version="1">MPGLSELQHRINERIKATPPVRVIVISFVLIILAGTLLLMLPISSKVGGATPIGALFTITSATCVTGLVVGDTFTLWTPFGQGVILACIQLGGLGLSTLAIGFSLLVRRKLGIREMKLASESSGGSGLDIAGLLKLTIIFTFACEAIGACLLAIRFVPMFGVNGIWPSIFCAISAYCNAGFDVLGFVEGNSSMTAFAGDPLVSLTISFLIIIGGLGFIVVQDIYLCKIQPRFHHKDTTRLNFHSQICLRVTIVLLLFGTLGFFLLEFGNTMEGLNLLEKLNCAFFQSTNTRTAGFASVDIAAQYEFTKVLSVLLMFIGACPGSTGGGIKTTTLTVLLFTVICTIRGKDEVVVLRHRFSTPAVYKAFSLTFIAILLVFIDAGVISSLNPDILYIDCLYEATSAFGTVGLSASVTPNLDPISKLILIFTMFIGRVGPLSFGLSILMRHKPKGDSIYPEGRMIIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZ78</accession>
    <name>R6XZ78_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01031</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29023">
        <property type="protein sequence ID" value="CDD29023"/>
        <property type="gene ID" value="BN815_01031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002797">
        <property type="entry name" value="Polysacc_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01943">
        <property type="entry name" value="Polysacc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="295"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="327"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="387"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="47398" checksum="7B686683ABE54061" modified="2013-07-24" version="1">MGIKEKIQRHRGGLLENTVMLYILQFSNMALGLVTQGYQMRVLGVELIGVLGAAQYATNFFQILIDFGFIYSATAKVSRFREDKNVLNKVLTCVILAKALFMALSFLILFVFIAPSLPDMSQVLVYAFYLISVCTYALLPDFMYRGLEQMATITVRAVAIKFFATMMIFLFVRQPGDYYMVPLFTAIGNVGAIVFVYWHLFRKVGVRFCKVTWYEVWVELKESSQFFLSKVAGSINSNLNGILLGTMAGPTATGLYTNADKIIGAARSGMSPIADSLYPHMMKHRNFRLIKKAMLLVYPIILVGCAIVFIFAEPLLVLWLGEEGSQVVLPLRLLIPVAVFCFPNYVLGYPTMGAMGLAKFANISVVFGTFVYLAGVAVLWLTVGINLVSLCLLTSLTEGSILAFRLVVIVKNRRLMGAGPETIGKQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZN9</accession>
    <name>R6XZN9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heptaprenyl diphosphate synthase component I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29233">
        <property type="protein sequence ID" value="CDD29233"/>
        <property type="gene ID" value="BN815_01101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014535">
        <property type="entry name" value="Hpre_diP_synt_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010898">
        <property type="entry name" value="Hpre_diP_synth_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07456">
        <property type="entry name" value="Hpre_diP_synt_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF027391">
        <property type="entry name" value="Hpre_diP_synt_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="17275" checksum="E55130C78690BD41" modified="2013-07-24" version="1">MKQKAGRVAFTGLLAALAIALSFLEGLLPPLPMMPPGAKLGLSNLATMYAAGSLGLPSALFLAVFKGVFALVTRGGMAGLMSLSGGVVSTVVMWLLLKKANASLGVVGVCGALAHNAAQLCVAYFLTGTSVAFYVPFLVLFGVLTGLLTGLVLKLTLKPLERLQNILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y050</accession>
    <name>R6Y050_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribulokinase/Uridine kinase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00556</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27250">
        <property type="protein sequence ID" value="CDD27250"/>
        <property type="gene ID" value="BN815_00556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PRK" evidence="1">
        <location>
            <begin position="58"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="319" mass="36027" checksum="8E2116CF4641D144" modified="2013-07-24" version="1">MSNFASGYVKYINHLEQINDAAVSDPARMIDEVEDAYHDHLENIARNITSHHQGVRVVMLSGPSSSGKTTTAHLLRDYLTQYGAKSYIVSLDDFYRGVGLAPRLPDGEYNYESVEALDVEAIKQCLLDIITTGRFSVPSYNFALGRPTGQPRPYQLGEGDIVIVEGIHGLNPLFTRELPQGSCVKLYVSVKQQIKSANGDVISPMDLRLVRRIVRDVQFRDTTPERTLSMWDQVVEGEDRYIRPYRLSADYTVNSIHIYEPCVMRTVAIPLLRAIAEDSPYYRKARDLEARLMRFEPISASLVPENSMLREFLGPKQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0T5</accession>
    <name>R6Y0T5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29648">
        <property type="protein sequence ID" value="CDD29648"/>
        <property type="gene ID" value="BN815_00095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021345">
        <property type="entry name" value="DUF2961"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11175">
        <property type="entry name" value="DUF2961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="360" mass="40906" checksum="9D57A547006D37EE" modified="2013-07-24" version="1">MYHGMTNHMGNLTLLSGSVSRSISPENFTGAKGAGAQCELEDGSAKWAARDLGKGWKVNPYIRVAPGETFEIANIQGPGAIQHIWMTPTGKWRDTILRMYWDGQAAPSVECPVGDFFCCGWQEYHQVSTLAVCVNPGSAFNCYWTMPFRQQCRITLENRGEEEAVYYYQIDYTLGEVPQDAAYFHAQFRRVNPLPYKEVYTILDGVQGQGHYVGTYMAWGVHNNGWWGEGEIKFYLDGDQEAPTICDTGTEDYFCGSYNFEDPRTHSRYVEFSTPYGGFYPVTQDGLYQSQKRFGAYRFHIADPIRFAENLRVTIQALGWRDGGRYLPLQDDIASVAFWYQTLPTAPFPALPDREFLEII</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1I2</accession>
    <name>R6Y1I2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Transcription antitermination protein NusB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Antitermination factor NusB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nusB</name>
        <name evidence="8" type="ORF">BN815_00694</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the NusB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27675">
        <property type="protein sequence ID" value="CDD27675"/>
        <property type="gene ID" value="BN815_00694"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00073">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011605">
        <property type="entry name" value="NusB_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11078">
        <property type="entry name" value="PTHR11078"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01951">
        <property type="entry name" value="nusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="4 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="NusB" evidence="7">
        <location>
            <begin position="5"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15426" checksum="0722A43906FB12A8" modified="2013-07-24" version="1">MTRREAREQAFILVFEQAIRGEPMDAILHDAAEARDLVPSAFAEQEALGVEAHREEIDSVIEQHIRGWSLRRLSKVALALLRLAIYEMKWEDSIPTSVSINEAVELAKTYGGKDDAPYINGVLASVAKTLPASQEKTHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1I8</accession>
    <name>R6Y1I8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00699</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000055">
        <property type="protein sequence ID" value="CDD27680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27680">
        <property type="protein sequence ID" value="CDD27680"/>
        <property type="gene ID" value="BN815_00699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="46" mass="4788" checksum="964A75CBEE7F2965" modified="2013-07-24" version="1">MGTAEEARNFTAFPEAASTWALSTVCTESTPENSVTASTSAHLAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1L4</accession>
    <name>R6Y1L4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endonuclease MutS2</fullName>
            <ecNumber evidence="7">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mutS2</name>
        <name evidence="10" type="ORF">BN815_00046</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27705">
        <property type="protein sequence ID" value="CDD27705"/>
        <property type="gene ID" value="BN815_00046"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045910">
        <property type="term" value="P:negative regulation of DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03280">
        <property type="entry name" value="ABC_MutS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00092">
        <property type="entry name" value="MutS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007696">
        <property type="entry name" value="DNA_mismatch_repair_MutS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036187">
        <property type="entry name" value="DNA_mismatch_repair_MutS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005747">
        <property type="entry name" value="MutS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002625">
        <property type="entry name" value="Smr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036063">
        <property type="entry name" value="Smr_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="PTHR11361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361:SF14">
        <property type="entry name" value="PTHR11361:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01713">
        <property type="entry name" value="Smr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005814">
        <property type="entry name" value="MutS_YshD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00533">
        <property type="entry name" value="MUTSd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00463">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160443">
        <property type="entry name" value="SSF160443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48334">
        <property type="entry name" value="SSF48334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01069">
        <property type="entry name" value="mutS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50828">
        <property type="entry name" value="SMR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Smr" evidence="9">
        <location>
            <begin position="709"/>
            <end position="784"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="519"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="331"/>
            <end position="338"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="784" mass="85960" checksum="A63C9A310522DA90" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1Z9</accession>
    <name>R6Y1Z9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01361</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000192">
        <property type="protein sequence ID" value="CDD30073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30073">
        <property type="protein sequence ID" value="CDD30073"/>
        <property type="gene ID" value="BN815_01361"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="170" mass="17857" checksum="2D18EF1B991A117C" modified="2013-07-24" version="1">MTVSEAADDYASETSGESTYYQPSPTKGENITSELATALEGADEGEAVVAETSNALYVIRKLSIADAYDEVEADEDQYISLLADMKGEEFNDYVLEQAQSVEGVELNQSAMNTVKLSSFVNDSTRNGASSASETESSASEESSSETSSAVESSESSASSEVSSESSAAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y261</accession>
    <name>R6Y261_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ammonium_transp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01398</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the P(II) protein family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30153">
        <property type="protein sequence ID" value="CDD30153"/>
        <property type="gene ID" value="BN815_01398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="129"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="289"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="7">
        <location>
            <begin position="24"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="503" mass="53231" checksum="C0604D1A3941B730" modified="2013-07-24" version="1">MFGPIDPLIMGDYSHILPAGVPLWAYAIFQTVFCATSATIVSGAMAERTKFSAYCIYSAAISLIIYPVSGHWIWGGGWLSQLGFHDFAGSTAVHMVGGLCALIGAKILGPRIGKYDKNGKPRAILGHNMTSAALGVFILWFCWFGFNGASTVGMDTDELMERAGLVFFNTNMSAAVACCAALIFTWIRYKKPDVSMTYNAALAGLVGVTAGCDAVNPVGAFFIGAVCGIVMVLAIEFFDKVAKIDDPVGAISVHCVCGALGTLLVGLFATGSSTAPGLFYGGGFGLLGIQVLGVLSVALYVAVVITIVFQLIKHTIGLRADPEDELMGLDVSEHGLLTAYGGFAMLPDTTALDGDAAAAPVQVSGDVPPAEAVPVKKMPVFSEESPKFTKVEILCKESRFEALKTAMMDIGITGMTMSHVLGCGLQKGKPEYYRGVQVEATLLPKVQVDIVVSKVPVRTVIETAKKVLYTGHIGDGKIFVYDVENVVKVRTGEEGYDALQDVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2B3</accession>
    <name>R6Y2B3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dinitrogenase iron-molybdenum cofactor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01441</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000205">
        <property type="protein sequence ID" value="CDD30198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30198">
        <property type="protein sequence ID" value="CDD30198"/>
        <property type="gene ID" value="BN815_01441"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00851">
        <property type="entry name" value="MTH1175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003731">
        <property type="entry name" value="Di-Nase_FeMo-co_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036105">
        <property type="entry name" value="DiNase_FeMo-co_biosyn_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033913">
        <property type="entry name" value="MTH1175_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02579">
        <property type="entry name" value="Nitro_FeMo-Co"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53146">
        <property type="entry name" value="SSF53146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitro_FeMo-Co" evidence="1">
        <location>
            <begin position="9"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="134" mass="13569" checksum="B994A46B9CE9EBCC" modified="2013-07-24" version="1">MKIAVTYENGQVFQHFGHTAQFKLYQVEDGQVLSSQVVETNGSGHGALAGFLQAQGVDTLLCGGIGGGAKTALAQAGIQLYGGVTGSADQAVADLLAGKLVFLPDVLCTHHGEGHGEGHSCGEHGCGGHSCGNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2N5</accession>
    <name>R6Y2N5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tryptophan--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tryptophanyl-tRNA synthetase</fullName>
            <shortName evidence="8">TrpRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">trpS</name>
        <name evidence="10" type="ORF">BN815_01547</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tryptophan to tRNA(Trp).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + H(+) + L-tryptophanyl-tRNA(Trp)</text>
            <dbReference type="Rhea" id="RHEA:24080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9671"/>
            <dbReference type="Rhea" id="RHEA-COMP:9705"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78535"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8 9">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.2" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000218">
        <property type="protein sequence ID" value="CDD30313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30313">
        <property type="protein sequence ID" value="CDD30313"/>
        <property type="gene ID" value="BN815_01547"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004830">
        <property type="term" value="F:tryptophan-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006436">
        <property type="term" value="P:tryptophanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00806">
        <property type="entry name" value="TrpRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00140_B">
        <property type="entry name" value="Trp_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002306">
        <property type="entry name" value="Trp-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024109">
        <property type="entry name" value="Trp-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01039">
        <property type="entry name" value="TRNASYNTHTRP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00233">
        <property type="entry name" value="trpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="15"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="198"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="14"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>L-tryptophan</name>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="150"/>
            <end position="152"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="198"/>
            <end position="202"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="334" mass="37801" checksum="DF981942E6F55818" modified="2013-07-24" version="1">MEAQQKKRVLSLIQPTGTFTLGNYLGALKNFVRLQEDYECVYGLADLHAITVRQEPAALRKNVLEAYALLLAMGIDLEKSIFFIQSQVPEHSQLAWVLNCYTQFGELSRMTQFKDKSAKHADNINAGLFTYPCLMAADILLYQADYVPVGADQKQHLELTRNIAERFNGLYSPTFTVPEPIIPKHGARIMSLQDPTKKMSKSDENVNAFVAVLDDPDTILRKFKRAVTDSDACVRFDPENKPGVSNLMAIYSTITGQTMEEIEQEFEGKGYGDFKPAVAEAVIEELRPIQERFRQFIGDKAYLEQCYKDNAPKAQRIARKTLQKVMKKVGYLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y327</accession>
    <name>R6Y327_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator with cupin sensor AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01644</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000241">
        <property type="protein sequence ID" value="CDD30423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30423">
        <property type="protein sequence ID" value="CDD30423"/>
        <property type="gene ID" value="BN815_01644"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="183"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="32144" checksum="F8C3E1CE005EDF6A" modified="2013-07-24" version="1">MRYLATHEHAPRGTFDFPIELYYVDPSHPRYEMPFHWHMEHELILVLQGVLRLSVEGEAFELAPGDCMLIADGAIHGGTPEGCIYECLVFDLERFLAGTTTCGQRVALLTEGEARLEGKFPAGTQAAAIVSQLFQAMETERPGYELTTMGLLWQLWGELLGQRLLGAAEPGPPRDIRRAQAVKNVLRRIRSSYGQPLTLEDLAAEAALEPKYFCRVFRQITGRTPINYLNYYRVECAAELLCTTQGSITDIALECGFGDVSYFSRMFRRYKGQTPGQYRRAHLAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3I7</accession>
    <name>R6Y3I7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01741</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30528">
        <property type="protein sequence ID" value="CDD30528"/>
        <property type="gene ID" value="BN815_01741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025277">
        <property type="entry name" value="DUF4038"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032260">
        <property type="entry name" value="DUF5060"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041239">
        <property type="entry name" value="DUF5605"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13204">
        <property type="entry name" value="DUF4038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16586">
        <property type="entry name" value="DUF5060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18310">
        <property type="entry name" value="DUF5605"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5060" evidence="2">
        <location>
            <begin position="2"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4038" evidence="1">
        <location>
            <begin position="96"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="DUF5605" evidence="3">
        <location>
            <begin position="434"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="500" mass="58206" checksum="42894AAD8B926E1D" modified="2013-07-24" version="1">MQVERWDVLEITVKGPGEGNPFVEQNIEGTFTGKNETITTAGFYDGDGVYKVRFMPSFEGEYTYKTTGSFPEAETQGSFTVTPATGNNHGPVRVANKYHFAYEDGVPYYSMGTTCYVWPHQPDEVIQKTLAELDKGYFNKMRFCVFPKHYIHNFKDPQTFPYEGAPVDASGLTEENFSYNVGFEGNQWDFTRFDPEHFRRIERAILALRDRGIEADLIVMHPYDRWGFSDMGKEADDLYWRYCIARFSAYRNLWWSLANEYDLMKAKTLEDWEHYASLLCQLDPYNHLRSVHNCIPFYDYTRPWVTHCSMQRQDLYRHVEYTTDYRTRYGKPVVWDEIAYEGNIDMGWGNISGQELTRRFWEASMRGGYAGHGETFIDEENDILWWSHGGELHGESPARIKFLHEILCQTPGLGLREGNSIFDEVVAVPDSPAHQGEYEIHYYGFGRPSFRNFHKEEGVSWRVEVIDTWEMTVTDLGVFSGSFRVPLPGKEYMAIRLTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3J6</accession>
    <name>R6Y3J6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.182</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ORF">BN815_00847</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>adenosine(1518)/adenosine(1519) in 16S rRNA + 4 S-adenosyl-L-methionine = 4 H(+) + N(6)-dimethyladenosine(1518)/N(6)-dimethyladenosine(1519) in 16S rRNA + 4 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19609"/>
            <dbReference type="Rhea" id="RHEA-COMP:10232"/>
            <dbReference type="Rhea" id="RHEA-COMP:10233"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74493"/>
            <dbReference type="EC" id="2.1.1.182"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.182" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000089">
        <property type="protein sequence ID" value="CDD28430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28430">
        <property type="protein sequence ID" value="CDD28430"/>
        <property type="gene ID" value="BN815_00847"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052908">
        <property type="term" value="F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023165">
        <property type="entry name" value="rRNA_Ade_diMease-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020596">
        <property type="entry name" value="rRNA_Ade_Mease_Trfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="PTHR11727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01131">
        <property type="entry name" value="RRNA_A_DIMETH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="rADc" evidence="8">
        <location>
            <begin position="42"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="302" mass="32050" checksum="7B6D486367AB24C2" modified="2013-07-24" version="1">MSNQTKAAGGLSDPGRIKEVLSRHGFHFSKALGQNFLINPTVCPRMAQACGAGDCKGVIEVGPGIGVLTWELSQVAEKVCAIELDSRLFPVLEETLAGRDNVKIIPGDVMKLDLAQLIQEEFGGGPVCVCANLPYYITSPVILRLLEEHLPLTSITVMVQKEAAARLCAAPGSKECGAVSVAVHYRSKPQVLFPVGRGSFMPPPKVDSAVIRLDVLQQPPVAVEDEKWFFQVARGAFAQRRKTAANSISATLGVPKPQVEQALLAAGVAANIRAERLTLEQLAALAGALGESLPLASRGKTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3P7</accession>
    <name>R6Y3P7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01809</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30598">
        <property type="protein sequence ID" value="CDD30598"/>
        <property type="gene ID" value="BN815_01809"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="10"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="325" mass="36168" checksum="58C9FD2C072A2ACA" modified="2013-07-24" version="1">MSTKSSEVLLSLEDICKYFKVSGGTLKAVDHVTFDIHKGETVGLVGESGCGKSTLGRVAMGIYPPTFGKLSYKGKEVNLKHSKDRFAYAKKAQIIFQDPYASLDPRMTVSSIIEEGMVIHKMYDEKRRKERVYELLEMVGLNREHANRFPHEFSGGQRQRIGIARALAIEPEFIVCDEPISALDVSIQSQVINLLHDLQEKLGLTYLFIAHDLNIVKYISDRIAVMYLGNVVELASSDELYKNTLHPYSQALLSAVPIPDPSAEAQKHRIIISGDVPSPINTPKGCNFAGRCPKACDQCKESKPPLQEITPGHYVACHLVQPEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3R9</accession>
    <name>R6Y3R9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA-specific 2-thiouridylase MnmA</fullName>
            <ecNumber evidence="7">2.8.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mnmA</name>
        <name evidence="8" type="ORF">BN815_01839</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47032"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11726"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:11728"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:87170"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MnmA/TRMU family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.13" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30628">
        <property type="protein sequence ID" value="CDD30628"/>
        <property type="gene ID" value="BN815_01839"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01998">
        <property type="entry name" value="tRNA_Me_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00144">
        <property type="entry name" value="tRNA_thiouridyl_MnmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023382">
        <property type="entry name" value="Adenine_a_hdrlase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004506">
        <property type="entry name" value="tRNA-specific_2-thiouridylase"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00420">
        <property type="entry name" value="trmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="166"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with tRNA" evidence="7">
        <location>
            <begin position="322"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="7">
        <location>
            <position position="216"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="18"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="7">
        <location>
            <position position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="374" mass="41855" checksum="873C97FEBC7B58F8" modified="2013-07-24" version="1">MRDSTNAQAPVEKKAIIAMSGGVDSSVAALLCQQQGFDCVGVTLALTDNSDRGLPEEAFPGERTCCSVDDVADARSVAFRLGMPFYVFNFKEAFRREVMDRFAAAYQRGETPNPCIDCNRYIKFAKLMHRGEEIGFPYVATGHYARVEQDRATGRWLLKKGLDENKDQSYMLYSLTQWELSRLLLPLGGLTKEETRRLAEEHGFVNARKRDSQDICFVPDGDYAAFIRRWTGRDFPPGDFVGTGGEVYGQHKGIIHYTVGQRKGLGLSFPQPMFVKELDVENNQVVLSKAEELFSQTVTARDVNLISVESIPEPLRVKARVRYRQKEQPATVVQTGPDELRVVFDQPQRAITPGQALVLYDGDTVVGGGRIVRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3X2</accession>
    <name>R6Y3X2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01883</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M42 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000302">
        <property type="protein sequence ID" value="CDD30678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30678">
        <property type="protein sequence ID" value="CDD30678"/>
        <property type="gene ID" value="BN815_01883"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008007">
        <property type="entry name" value="Peptidase_M42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023367">
        <property type="entry name" value="Peptidase_M42_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05343">
        <property type="entry name" value="Peptidase_M42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="6">
        <location>
            <begin position="10"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="514" mass="56858" checksum="B2F2148702A37011" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y471</accession>
    <name>R6Y471_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavodoxin_5 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01962</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000314">
        <property type="protein sequence ID" value="CDD30758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30758">
        <property type="protein sequence ID" value="CDD30758"/>
        <property type="gene ID" value="BN815_01962"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026816">
        <property type="entry name" value="Flavodoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12724">
        <property type="entry name" value="Flavodoxin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin_5" evidence="1">
        <location>
            <begin position="4"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="19592" checksum="9E56E5AEF296F7E4" modified="2013-07-24" version="1">MDQLIIYGSQYGTTQRYAERFSQLTRLPCIRSEAVKDLSCYDRVIHFGGLYAGGVKGLRRTLRALGEHTGLIIVTVGLADVTDEENLANIRNALKRQVPGHLLEKTQVFHLRGGIDYRKLSLKHKAMMTLLYHSVKNQPEEQKTAETRAMIETFNKAVDFVDFSALEPIAGAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y499</accession>
    <name>R6Y499_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00917</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28685">
        <property type="protein sequence ID" value="CDD28685"/>
        <property type="gene ID" value="BN815_00917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="3"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="26106" checksum="F46AAEBD3FDD4B32" modified="2013-07-24" version="1">MGERLDKFLASQGLGTRKEVGKLIRSGAVLVNGAPQRDPGAKVEPGADQVTAQGKEIRYQEFLTIMLNKPAGVLSATEDRRQKTVLDLLPEGLRRRGLFPAGRLDKDTTGLLLITDDGELAHKMLSPKNHVYKQYRAQLGAPVEEADIQAFAAGVAWEGEQYAPARLWVEQDPRAAFVEIREGRFHQVKRMFQARGKTVLQLKRLKIGGLWLDSTLQEGECRLLTPQEIQAIFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4R3</accession>
    <name>R6Y4R3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fe-S metabolism associated SufE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02085</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SufE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000343">
        <property type="protein sequence ID" value="CDD30923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30923">
        <property type="protein sequence ID" value="CDD30923"/>
        <property type="gene ID" value="BN815_02085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003808">
        <property type="entry name" value="Fe-S_metab-assoc_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43597">
        <property type="entry name" value="PTHR43597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02657">
        <property type="entry name" value="SufE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SufE" evidence="2">
        <location>
            <begin position="12"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15704" checksum="B69341FC3AC8DC6B" modified="2013-07-24" version="1">MTLQEKQEGYLQELGSLEDEFDQYTWLMQLACQRPELCQVAHQEERRFLGCQSNLWVELGCQEGRLSLSVDSDTLIVKGLAVMLADIVTGCTPQEVAQGDISLYQKLGLEVALTSVRRNGFAQLVGWVQRRAGELAQETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y576</accession>
    <name>R6Y576_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02236</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31083">
        <property type="protein sequence ID" value="CDD31083"/>
        <property type="gene ID" value="BN815_02236"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="9443" checksum="DB04185AE68F52B4" modified="2013-07-24" version="1">MVRTLPERIKAMMRKVANKISAMPKSGIKASRPMQAPVKIKNSPMFFLVCKRSKVEVPTKIKAIFTNSEGCTLRGPMRIQLVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5K0</accession>
    <name>R6Y5K0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sporulation protein YtfJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02362</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31218">
        <property type="protein sequence ID" value="CDD31218"/>
        <property type="gene ID" value="BN815_02362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014229">
        <property type="entry name" value="Spore_YtfJ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39162">
        <property type="entry name" value="PTHR39162"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09579">
        <property type="entry name" value="Spore_YtfJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021377">
        <property type="entry name" value="YtfJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02874">
        <property type="entry name" value="spore_ytfJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="15309" checksum="93BF95ECFE50EAC7" modified="2013-07-24" version="1">MSDNQVNNLLGVTMDKIKQMVDVNTVIGDPVTTPDGTTVIPVSRVSYGFASGGSDLPSKAQPSAGLFAGGSGAGITISPIAFLTIHQGNVRVLQIEPYLSSVDRALEKVPDVVDKVTSLFQKEDRKEEPLPQAPAQPVEPVPQDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7I1</accession>
    <name>R6Y7I1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">GTP diphosphokinase</fullName>
            <ecNumber evidence="3">2.7.6.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00558</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate</text>
            <dbReference type="Rhea" id="RHEA:22088"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:142410"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.6.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; ppGpp biosynthesis; ppGpp from GTP: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the relA/spoT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.5" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27254">
        <property type="protein sequence ID" value="CDD27254"/>
        <property type="gene ID" value="BN815_00558"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00908">
        <property type="reaction ID" value="UER00884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008728">
        <property type="term" value="F:GTP diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015970">
        <property type="term" value="P:guanosine tetraphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01668">
        <property type="entry name" value="TGS_RSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004811">
        <property type="entry name" value="RelA/Spo_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045600">
        <property type="entry name" value="RelA/SpoT_AH_RIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033655">
        <property type="entry name" value="TGS_RelA/SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19296">
        <property type="entry name" value="DUF5913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00691">
        <property type="entry name" value="spoT_relA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="8">
        <location>
            <begin position="51"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="9">
        <location>
            <begin position="391"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="7">
        <location>
            <begin position="662"/>
            <end position="735"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="559"/>
            <end position="585"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="10"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="735" mass="83269" checksum="E1A7E35281A565E9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7L8</accession>
    <name>R6Y7L8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01296</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29910">
        <property type="protein sequence ID" value="CDD29910"/>
        <property type="gene ID" value="BN815_01296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="3">
        <location>
            <begin position="109"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="410" mass="45339" checksum="398C51D80D1FFE68" modified="2013-07-24" version="1">MARKNHAGSEGFEDVSSYSSSKEYKKRKKNRRRRAVLRGIAVFFCLVFILCGSGLVYVSTNILAGLTTTSIAKDDGALGIDTENIVMDNSIKNIALFGVDSRSNSFSGRSDVIMILSVDNRHGKLKLTSILRDSEVTIEGEGYQSYVNYTDKINAAYSLGGPELAIRTLNQNFGLDIRDYVTVNFAYMAAIVDAFGGVDITMTGEEVYQLNANLWALSQEVEDEKEKGSSSSDTVYAEIKATDYIPDVNGEINIQYGEYEDGTYHLNGNQAVAYGRIRYVGSDYARVVRQQTVFAALVDKVTELGWSDYPSVIQQMMPYCETSLDLSDVMGLAPILLTDFSISSISVPNVEYETDLFDGLDSYSTYHMIYDTSGAAKRISAFIYEEDSPYWEEYGDTSQEPDTTTAVGGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7M4</accession>
    <name>R6Y7M4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Magnesium transporter MgtE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01301</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Acts as a magnesium transporter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the SLC41A transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29915">
        <property type="protein sequence ID" value="CDD29915"/>
        <property type="gene ID" value="BN815_01301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006668">
        <property type="entry name" value="Mg_transptr_MgtE_intracell_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038076">
        <property type="entry name" value="MgtE_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006669">
        <property type="entry name" value="MgtE_transporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006667">
        <property type="entry name" value="SLC41_membr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036739">
        <property type="entry name" value="SLC41_membr_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43773">
        <property type="entry name" value="PTHR43773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01769">
        <property type="entry name" value="MgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03448">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00924">
        <property type="entry name" value="MgtE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161093">
        <property type="entry name" value="SSF161093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00400">
        <property type="entry name" value="mgtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="353"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="379"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="421"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="130"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="8">
        <location>
            <begin position="195"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD29915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="49304" checksum="43548B8651058CDF" modified="2013-07-24" version="1">MKEKILALLEQKKYPEIAALVKDMNPADAAVLLEELPQQSMPLIFRLLPKELAADAFAYMDGDTQELLIQGFTDKELDEVMGEMFLDDTVDLIEEMPANVVKKILRHVDEETRKMINQVLNYPKDSAGAMMTMEYVDLKRSMTVEQAFDRIRATGLDSETIYTCYVTDSRRKLEGIVTVRELLLSPKNAVLRDIMETNVKFVSTHTDQEEAARLLSKYDFLALPVVDAEERLVGIVTVDDAMDVMQEEATEDMERMAAMAPSDKPYMKVSIFENWKKRAPWLLFLMISATFTGSIITHFETALAANLVLSSFIPMLMSTGGNTGSQASTTIIRSLSLGEIRYRDIPRILLKECGTAILCGVTLAVVNFAKLMLIDRVGVMVSIVVCLTILAVALVANLVGSLMPLLAKRLGLDPTVMASPLISTILDAVSLILFFNIAVAVLNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7N9</accession>
    <name>R6Y7N9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29930">
        <property type="protein sequence ID" value="CDD29930"/>
        <property type="gene ID" value="BN815_01311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="372" mass="37511" checksum="9A66AB623947796C" modified="2013-07-24" version="1">MLAELDPAGGAGGNHGQSAAVLHPVDELGGLLHNGHIGAEVGVEDLVKAQAAQGGHHLALHVGADGQAELLAQGGAHGGGSLDDDHLVGVVDGVQDFLGVVLLGQSAGGAADDALAAGHAGHVAQGLLKGAANLGVEAAVVGADDRDVLALAGGHAATAQDALGVVALQVGGGEILVARGHGALEAVLLLNAHVVAQLLELAVAAALARQTFLLVDGQQQFQGHPAGFLDLGGVGEHLHALVDGVHAGGHQGPGTLHLYHAHTAGADLVDVLQVAKGGDIDTGVAGGFQDGGIRGHFVGNAVDLYIDLFHVRTLLSYFLTTAPNLHFSMQTPHLMHLVVSMTWGCLTEPEIAPTGQFRAHRVQPLHLSAMME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9L1</accession>
    <name>R6Y9L1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01791</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30580">
        <property type="protein sequence ID" value="CDD30580"/>
        <property type="gene ID" value="BN815_01791"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="7">
        <location>
            <begin position="43"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="28422" checksum="10B852915B8FA79C" modified="2013-07-24" version="1">MNFTQMYESFQALENPSFWQDIYMRFYRAWFEGDRWMQYFEGLGTTILVTILALLIGVILGVVVAVIRTGHDQQRKGKHNPVLAVLNLICKIYVTVIRGTPMLVQLMIMGFVVFQNSRNFTMVGALALGINSGAYVAEIIRGGLMSLDPGQMEAGRSLGLGYLPTMTFIVVPQAFKAILPALGNEFITLLKDTSLISAIAGKEVVYFAKAIGAKTYDYMFPLLIIAVMYLILVLIFTWLQGILERRLRASDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9N4</accession>
    <name>R6Y9N4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized low-complexity proteins</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000074">
        <property type="protein sequence ID" value="CDD27989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27989">
        <property type="protein sequence ID" value="CDD27989"/>
        <property type="gene ID" value="BN815_00739"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13599">
        <property type="entry name" value="Pentapeptide_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="197" mass="21605" checksum="78A70BA1258B1FE0" modified="2013-07-24" version="1">MREYCGETFSKLDRAGEGLSSRLFEDCLFTGCRLEGALVENCQFSGCRFEGCKITAPKFRATQMLSCDFADCALSGVDWSALLDERKRGMGFLPFDSLRGCSLRHCVFFGLDLKGFQFAGADLSGSFFDGCKLEEASFAGCRLQGTSFAQNDLRGADFRGATEYFFSLEGNRVKNAKFSLPEAVNLLAALGVVIEDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9P0</accession>
    <name>R6Y9P0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 4">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01826</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the thioredoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30615">
        <property type="protein sequence ID" value="CDD30615"/>
        <property type="gene ID" value="BN815_01826"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 5" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="6">
        <location>
            <begin position="1"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="5">
        <location>
            <begin position="31"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00020570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="102" mass="11386" checksum="E1853DC7B544D558" modified="2013-07-24" version="1">MAVLTITKDNFQQEVLNSNVPVLVDFWASWCGPCKMFSPIVDEFAEENQGKVKVGKINIDEEPDLAAQFRVMSIPTAMLFENGQVKETLVGVQPKARLEAML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9W1</accession>
    <name>R6Y9W1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000308">
        <property type="protein sequence ID" value="CDD30695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30695">
        <property type="protein sequence ID" value="CDD30695"/>
        <property type="gene ID" value="BN815_01900"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020256">
        <property type="entry name" value="Spore_coat_CotJA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11007">
        <property type="entry name" value="CotJA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="6933" checksum="3C8F630518BAAEA2" modified="2013-07-24" version="1">MTGMACGLYEGLSPLPKDPVPGMAYVPYQQWDAQLHSIDRALDAGTLFPVLDKPFTGRRGEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAC8</accession>
    <name>R6YAC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MazG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30880">
        <property type="protein sequence ID" value="CDD30880"/>
        <property type="gene ID" value="BN815_00183"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11541">
        <property type="entry name" value="NTP-PPase_u4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011379">
        <property type="entry name" value="MazG-related_GP37"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004518">
        <property type="entry name" value="MazG_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03819">
        <property type="entry name" value="MazG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006639">
        <property type="entry name" value="UCP006639_pph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MazG" evidence="1">
        <location>
            <begin position="30"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="12223" checksum="926AE9D285D39872" modified="2013-07-24" version="1">MTVNEYQKLAMVTLNPDLSKRDVLINGVMGLCGEAGEAIDLVKKHLAQGHELDRESLIKELGDVAWYLAETATALDVELEEVLLQNIEKLKRRYPEGLAAERSIQRCET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAI9</accession>
    <name>R6YAI9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Beta-galactosidase</fullName>
            <shortName evidence="5">Beta-gal</shortName>
            <ecNumber evidence="3 5">3.2.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_00191</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.</text>
            <dbReference type="EC" id="3.2.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glycosyl hydrolase 42 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.23" evidence="3 5"/>
    <dbReference type="EMBL" id="CBGU010000346">
        <property type="protein sequence ID" value="CDD30935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30935">
        <property type="protein sequence ID" value="CDD30935"/>
        <property type="gene ID" value="BN815_00191"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009341">
        <property type="term" value="C:beta-galactosidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004565">
        <property type="term" value="F:beta-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013739">
        <property type="entry name" value="Beta_galactosidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013738">
        <property type="entry name" value="Beta_galactosidase_Trimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003476">
        <property type="entry name" value="Glyco_hydro_42"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013529">
        <property type="entry name" value="Glyco_hydro_42_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36447">
        <property type="entry name" value="PTHR36447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02449">
        <property type="entry name" value="Glyco_hydro_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08533">
        <property type="entry name" value="Glyco_hydro_42C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08532">
        <property type="entry name" value="Glyco_hydro_42M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001084">
        <property type="entry name" value="B-galactosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Glyco_hydro_42" evidence="9">
        <location>
            <begin position="13"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_42M" evidence="10">
        <location>
            <begin position="395"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_42C" evidence="11">
        <location>
            <begin position="610"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="6">
        <location>
            <position position="305"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="313"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001084-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="666" mass="75655" checksum="66271C749F15107A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAJ5</accession>
    <name>R6YAJ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Conserved domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30940">
        <property type="protein sequence ID" value="CDD30940"/>
        <property type="gene ID" value="BN815_02099"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="34330" checksum="6E86E81DC28A6A66" modified="2013-07-24" version="1">MVFETGNMDFTLSLDGEAFFSTRALELPEALNQSRVNISLPTGGGERLVMEMTPLGQIGIFPPLPRLASDALETAGQMAYANHYAIPAGATTLTTLLLWGLFLVGAYQGRPPWKLLLLVFAAGELTFYSLALGFGSYFLSQELLPFLSWRGWPLLGIAAMAAYLLLHREKRFWKALGLATLCSVGLFLACWGISWSQGGYLARYVASMALEIASGYWDRLFYWLSLWLVIVCTVLSSWEVVRTILQTWVKNRSLELKDQLVMENYRSLEERLREEAAVRHESSHRLAALEAMLQEGDLEGLREYLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAJ6</accession>
    <name>R6YAJ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00809</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28294">
        <property type="protein sequence ID" value="CDD28294"/>
        <property type="gene ID" value="BN815_00809"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="293" mass="31449" checksum="50FCEF126AC0F6E0" modified="2013-07-24" version="1">MTRKHFTIFAEVCRFLNFSQAAEALNTTQPAVSLAVKELESHYGVALFERMNRRVYLTPAGEALLATAQDVLRGFQEAEETLGQGRPLALRVGANVSFGEAGLAQVLGRFRQEHPQVRLRALVANSDKIQSLLAENQLDVGIVDGLGVSERLRAQPLYQEDLVLAAAPGRFPAPATVEELAALPLLLREPGSGLRSSVDRVFSQQGLALQPLLESTSTAALAQAAKAGLGVAILPEALAQRESGLQVGTVPEVRFFRQFACALHRQKAPSPALEAFLALLRDQTAAKTGPLSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAY8</accession>
    <name>R6YAY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31045">
        <property type="protein sequence ID" value="CDD31045"/>
        <property type="gene ID" value="BN815_02199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425378" evidence="1">
        <location>
            <begin position="23"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17589" checksum="842CC44DBA72B1FE" modified="2013-07-24" version="1">MKKWFLVLLALCLTLSGCQASRVPGLDWDAEEMVELRLERVMYLVGEKTTTDPQEIQAVAEGLRSVAVLREWRPDDPCSEGSGSITFTFVREDGSQEVVCYNGCRSSLSTSEGEFLLPKDASPTQDELWALVDVPVEFPPEHNHTQPDEETAEFFGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB45</accession>
    <name>R6YB45_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00199</name>
        <name evidence="2" type="ORF">BN815_00600</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000034">
        <property type="protein sequence ID" value="CDD27350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27350">
        <property type="protein sequence ID" value="CDD27350"/>
        <property type="gene ID" value="BN815_00600"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31115">
        <property type="protein sequence ID" value="CDD31115"/>
        <property type="gene ID" value="BN815_00199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="14"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="110" mass="12928" checksum="517DA722D9978F10" modified="2013-07-24" version="1">MISDYMEKANFEDTGFAYTLSLISGKHKMVILYCLMEFGVVRFNELKRYLKTVADKTLSANLKELERDQLILRKEYPQIPPKVEYSLSERGKSLMKILDQLCIWGEENRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB83</accession>
    <name>R6YB83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02304</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31160">
        <property type="protein sequence ID" value="CDD31160"/>
        <property type="gene ID" value="BN815_02304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="135"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22636" checksum="262A1A9F3DEB9548" modified="2013-07-24" version="1">MKDVFKPRPKDGPQGEPPFWERFSGPKALLLLLCALLLGVAVGAALAVFFPLFQGRWVMPLQFSGIPVAGSGFISCFTTLLLNVLIGLVPLFLLGVTAFGVFAVPLFLFFRGITVGIGVSYFLWRDELLGLARSALLYTPAAALAGVLLLLFAVRSLHFSKHLAKAGFSPEGEGSLDLKLYFHDLLLFLSFSVAVSLAGCLPVLVYGLFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBD8</accession>
    <name>R6YBD8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">DNA mismatch repair protein MutS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mutS</name>
        <name evidence="10" type="ORF">BN815_02379</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the DNA mismatch repair MutS family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000385">
        <property type="protein sequence ID" value="CDD31235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31235">
        <property type="protein sequence ID" value="CDD31235"/>
        <property type="gene ID" value="BN815_02379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00096">
        <property type="entry name" value="MutS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005748">
        <property type="entry name" value="DNA_mismatch_repair_MutS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007695">
        <property type="entry name" value="DNA_mismatch_repair_MutS-lik_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017261">
        <property type="entry name" value="DNA_mismatch_repair_MutS/MSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007861">
        <property type="entry name" value="DNA_mismatch_repair_MutS_clamp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007696">
        <property type="entry name" value="DNA_mismatch_repair_MutS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016151">
        <property type="entry name" value="DNA_mismatch_repair_MutS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036187">
        <property type="entry name" value="DNA_mismatch_repair_MutS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007860">
        <property type="entry name" value="DNA_mmatch_repair_MutS_con_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036678">
        <property type="entry name" value="MutS_con_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="PTHR11361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01624">
        <property type="entry name" value="MutS_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05188">
        <property type="entry name" value="MutS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05192">
        <property type="entry name" value="MutS_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05190">
        <property type="entry name" value="MutS_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037677">
        <property type="entry name" value="DNA_mis_repair_Msh6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00533">
        <property type="entry name" value="MUTSd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48334">
        <property type="entry name" value="SSF48334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53150">
        <property type="entry name" value="SSF53150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55271">
        <property type="entry name" value="SSF55271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01070">
        <property type="entry name" value="mutS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_MISMATCH_REPAIR_2" evidence="9">
        <location>
            <begin position="695"/>
            <end position="711"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="621"/>
            <end position="628"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS00486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="865" mass="96644" checksum="31AC12F51BEC72EA" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBJ2</accession>
    <name>R6YBJ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TIGR00153 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00233</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0111 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31295">
        <property type="protein sequence ID" value="CDD31295"/>
        <property type="gene ID" value="BN815_00233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018445">
        <property type="entry name" value="Put_Phosphate_transp_reg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01865">
        <property type="entry name" value="PhoU_div"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="207" mass="24012" checksum="420E4E651D451528" modified="2013-07-24" version="1">MAKKQDSFYYENFSECAACACQAAHYLEDALKNFKPEGLSSMLDELHQVEHAADEKKHELSNVLARAFITPIEREDIILLSQSIDEITDKIEDVMLRLYCNNVQTIRPDAIEMGAVLIHCCEEVRKLIDEFADFRRSKKLREYIIHINTMEEQADKLFIDSMRRLHTSTSDPIEIISWREIYIYMEKCADACEHVADAVESVIMKNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBV5</accession>
    <name>R6YBV5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Proline--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="8">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">proS</name>
        <name evidence="10" type="ORF">BN815_00946</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro)</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="8">Consists of three domains: the N-terminal catalytic domain, the anticodon-binding domain and the C-terminal extension.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 3 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28759">
        <property type="protein sequence ID" value="CDD28759"/>
        <property type="gene ID" value="BN815_00946"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00778">
        <property type="entry name" value="ProRS_core_arch_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01571">
        <property type="entry name" value="Pro_tRNA_synth_type3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004499">
        <property type="entry name" value="Pro-tRNA-ligase_IIa_arc-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016061">
        <property type="entry name" value="Pro-tRNA_ligase_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017449">
        <property type="entry name" value="Pro-tRNA_synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033721">
        <property type="entry name" value="ProRS_core_arch_euk"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43382">
        <property type="entry name" value="PTHR43382"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09180">
        <property type="entry name" value="ProRS-C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SMART" id="SM00946">
        <property type="entry name" value="ProRS-C_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64586">
        <property type="entry name" value="SSF64586"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00408">
        <property type="entry name" value="proS_fam_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="9">
        <location>
            <begin position="45"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="479" mass="54948" checksum="31EC5A0BE4CEC98E" modified="2013-07-24" version="1">MAQQKKMVENITSMEEDFSQWYTDVVKKAELMDYSSVKGCMVIEPYGYALWENMQADLDRRFKKLGVQNVYMPMFIPESLLQKEKDHVEGFAPECAVVTEGGGEKLPERLFVRPTSETLFCEHYQKIIHSYRDLPKLYNQWCSVVRWEKTTRPFLRSSEFLWQEGHTMHETAQEAQEFTLSILKVYEDFYRETLAIPAVVGQKTEKEKFAGAEATYTIEPMMHNGVALQGGTSHYFGDGFAKAFDITYTDRENKLQHPHQTSWGVSTRMIGAVIMVHGDDNGLVLPPKIAPIQVVIVPVAMHKPGVLEKAQELQKRLSEKFRVKLDASDNSPGWKYAQYEMQGVPLRLEIGPKDIEQNQCVLVRRDNREKQFVSLDNLEEAIESSLTALHDAIYQRALDNLKEKTFTATTYEEFLDTAQNHPGFIKAMWCGDSACEDKIKEETGGVKSRCIPFEEEHLSDVCVCCGKPAKHMVYWGKQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCM2</accession>
    <name>R6YCM2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L7/L12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rplL</name>
        <name evidence="7" type="ORF">BN815_00430</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31645">
        <property type="protein sequence ID" value="CDD31645"/>
        <property type="gene ID" value="BN815_00430"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00387">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00368">
        <property type="entry name" value="Ribosomal_L7_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000206">
        <property type="entry name" value="Ribosomal_L7/12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013823">
        <property type="entry name" value="Ribosomal_L7/L12_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008932">
        <property type="entry name" value="Ribosomal_L7/L12_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036235">
        <property type="entry name" value="Ribosomal_L7/L12_oligo_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45987">
        <property type="entry name" value="PTHR45987"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00542">
        <property type="entry name" value="Ribosomal_L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16320">
        <property type="entry name" value="Ribosomal_L12_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48300">
        <property type="entry name" value="SSF48300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00855">
        <property type="entry name" value="L12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 7" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L12_N" evidence="6">
        <location>
            <begin position="4"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Ribosomal_L12" evidence="5">
        <location>
            <begin position="59"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="12915" checksum="DE9D7B4E003348EC" modified="2013-07-24" version="1">MSEKVTNLIEEVKSLTVLELSELVKALEEEFGVSAAAPAAVAVAAPAAAAPAAEEKTEFDVVLKSAGANKINVIKVVKEITGLGLKEAKALVDEAPKTVKEGASKDDAESIKTKLTEAGAEVELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCR4</accession>
    <name>R6YCR4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">NAD-dependent protein deacetylase</fullName>
            <ecNumber evidence="4">2.3.1.286</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Regulatory protein SIR2 homolog</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">cobB</name>
        <name evidence="6" type="ORF">BN815_01036</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + N(6)-acetyl-L-lysyl-[protein] + NAD(+) = 2''-O-acetyl-ADP-D-ribose + L-lysyl-[protein] + nicotinamide</text>
            <dbReference type="Rhea" id="RHEA:43636"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10731"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17154"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:61930"/>
            <dbReference type="ChEBI" id="CHEBI:83767"/>
            <dbReference type="EC" id="2.3.1.286"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the sirtuin family. Class U subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.286" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29034">
        <property type="protein sequence ID" value="CDD29034"/>
        <property type="gene ID" value="BN815_01036"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034979">
        <property type="term" value="F:NAD-dependent protein deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006476">
        <property type="term" value="P:protein deacetylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01968">
        <property type="entry name" value="Sirtuin_ClassU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003000">
        <property type="entry name" value="Sirtuin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026591">
        <property type="entry name" value="Sirtuin_cat_small_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028628">
        <property type="entry name" value="Sirtuin_class_U"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026590">
        <property type="entry name" value="Ssirtuin_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02146">
        <property type="entry name" value="SIR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50305">
        <property type="entry name" value="SIRTUIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Deacetylase sirtuin-type" evidence="5">
        <location>
            <begin position="5"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="103"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="189"/>
            <end position="191"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="214"/>
            <end position="216"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="241" mass="26651" checksum="85F78C4539B8EDD3" modified="2013-07-24" version="1">MTGIETLRQWLNTARRAAFLGGAGVSTASGIPDFRSAHGLYQQKKQGLSYEEMLSHGYFVRHTAEFYDFLRGVMLYPDAKPNGAHYALAQLERQGKLRAVITQNIDGLHQMAGSRNVLELHGSENRYTCLACGKRYDMTCVTQTTGVPRCACGGTIRPDVVLYGESLNEKDLRQAIRYVEEADLLLVAGTSLVVYPVAGLVEYVRPGAKLVILNRDPTPYDSRADLVLRGDLVEELAHCVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCZ0</accession>
    <name>R6YCZ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DAK2 domain fusion protein YloV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01066</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29134">
        <property type="protein sequence ID" value="CDD29134"/>
        <property type="gene ID" value="BN815_01066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004371">
        <property type="term" value="F:glycerone kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019986">
        <property type="entry name" value="DAK2_dom-cont_prot_YloV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004007">
        <property type="entry name" value="DhaL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036117">
        <property type="entry name" value="DhaL_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033470">
        <property type="entry name" value="UPF_DhaK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13684">
        <property type="entry name" value="Dak1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02734">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01121">
        <property type="entry name" value="Dak1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01120">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101473">
        <property type="entry name" value="SSF101473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03599">
        <property type="entry name" value="YloV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51480">
        <property type="entry name" value="DHAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DhaL" evidence="2">
        <location>
            <begin position="5"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="310"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="560" mass="60211" checksum="C13A29BAFBF83382" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEB7</accession>
    <name>R6YEB7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01218</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29634">
        <property type="protein sequence ID" value="CDD29634"/>
        <property type="gene ID" value="BN815_01218"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="82"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="32471" checksum="73DC867CD479C947" modified="2013-07-24" version="1">MATKKQQAEYRKSQAKSKLAWGIAFFFAIVWLVIALVPFLFMILNSFRKQFDMLSQGVFHLPDPWYFENYSNVVANGFFGYFFRSVIVVAISLVLMLMISAFAAYPLSRMKFRFRNLIYAGVVAMMAIPMHVTLIPIFKMTTNMGLYDTLWSLIGPYVTFALPMSVFIQTAFMSTIPKEIEESAEIDGCNKYRSFFSIILPLSKSGLSTLAIYNGVSMWNEFAFANTLLQTPSNKTLPLALGQFKGEHSLDIPLILTVLVLSVLPMLILFIVFQDKLVKGMMAGAVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEG1</accession>
    <name>R6YEG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SpoVT/AbrB domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01227</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29694">
        <property type="protein sequence ID" value="CDD29694"/>
        <property type="gene ID" value="BN815_01227"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="2">
        <location>
            <begin position="4"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8694" checksum="6DF8F4DE5FBCEFBE" modified="2013-07-24" version="1">MDTAKIFENGRSQAVRLPQKYRFNADEVVIQRLGDAVLLVPKESLWNTFMDGVNSFTEDIFENGRDQGGQEERDSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEZ8</accession>
    <name>R6YEZ8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00526</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000019">
        <property type="protein sequence ID" value="CDD27171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27171">
        <property type="protein sequence ID" value="CDD27171"/>
        <property type="gene ID" value="BN815_00526"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="29204" checksum="3CA0C4838E93E243" modified="2013-07-24" version="1">MAENESAADYGCQEYFKEAVCIDAQRVYDSCSDKDCIEDIRVLFPAARQSLVDSATNVRVREVNVITVYIDLQPIPFNKGFYSVDMTFFFDVCLDLFGGTASCPVPINGVAIFNKKVVLYGSEGNVKLFTSGCSIDDVQAEDARVLPKATVQVAQPVALSARLCEHSACGCEPYCRIPESICQRYGGDFDSCPQKNTVYVTIGLFIIVQMVRNVQMLIPAYDFCVPEKECVASSDNPCELFRRIDFPTSEFFPPRATDVNGGCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG69</accession>
    <name>R6YG69_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Metallophos domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27541">
        <property type="protein sequence ID" value="CDD27541"/>
        <property type="gene ID" value="BN815_00652"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="46"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="35577" checksum="DBFFCE1EA3D0D0EF" modified="2013-07-24" version="1">MTREEAERELCRLLEEAEADIQAGRTIPAEEVFAQLREKFAPRNIVYLTGDTHGRFERIVDFCSRREMEPENTFVILGDAGLNFYGGHRDALGKEQLAKLPCTFFCIHGNHEQRPGPELGYELSHYHGGSVWVQPQYPNIVFAIDGEVYDFCGHSCLVIGGAYSVDKYYRLARGYGWWPDEQPSPQIKEKVERVLEERNWQVDVVFSHTCPLKYEPVEVFLPGIDQSTVDKSTEEWLDTIESKLHYERWYCGHYHTEKQVDKLRFMFEDYALLPHTLSIEEEKALIAKMERQAEMAEALGWDEEDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH43</accession>
    <name>R6YH43_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00723</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000066">
        <property type="protein sequence ID" value="CDD27861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27861">
        <property type="protein sequence ID" value="CDD27861"/>
        <property type="gene ID" value="BN815_00723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12678" checksum="B74501F3E5717AEB" modified="2013-07-24" version="1">MSAKNLDKHNRWRNKTVAFRVSPEEDAQIETAVKLTGLTKQDYIIRRLLCRDVVVQGNPRVYKALRDQLAAVLDELRRIEGGQGVNDELLDTIQMIATIMSGMQEDFAYGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH64</accession>
    <name>R6YH64_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC-type cobalt transport system permease component CbiQ and related transporters</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01919</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30714">
        <property type="protein sequence ID" value="CDD30714"/>
        <property type="gene ID" value="BN815_01919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="29960" checksum="DDC0E42DC0B7795B" modified="2013-07-24" version="1">MISDITLGQYFPQKSPLHATDPRLKICLLVYAIVLLFAAGNFASLALAVVYIGLGIAFSKIPCKLYWKSLKPIWFLVAFTGILNIFYGAGEPLWKFGIFQITLNGIYNAIFVSVRIIALILASSVLTFTTSPTQLTDAIERLLKPLAKLRVPVHEFAMMMTIALRFVPTLLEETDKIMAAQKARGADMESGGITQRIRALVPVLIPLFVSAFRRAFDLATAMESRCYHGGDGRTKMKQLHFGQGDWLVLLLSAVALGAFIALNLLVPAVGRGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH67</accession>
    <name>R6YH67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Predicted membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00726</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000067">
        <property type="protein sequence ID" value="CDD27881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27881">
        <property type="protein sequence ID" value="CDD27881"/>
        <property type="gene ID" value="BN815_00726"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010540">
        <property type="entry name" value="CmpB_TMEM229"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06541">
        <property type="entry name" value="ABC_trans_CmpB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="348"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="380"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="421"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="459"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="258"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="527" mass="60392" checksum="4CC4C2E1B4212CEB" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH86</accession>
    <name>R6YH86_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative dihydroxyacetone kinase regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01943</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30739">
        <property type="protein sequence ID" value="CDD30739"/>
        <property type="gene ID" value="BN815_01943"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039532">
        <property type="entry name" value="TetR_C_Firmicutes"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012738">
        <property type="entry name" value="Tscrpt_reg_DhaS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14278">
        <property type="entry name" value="TetR_C_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02366">
        <property type="entry name" value="DHAK_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="186" mass="21800" checksum="534813C39DA93557" modified="2013-07-24" version="1">MPDSNITKRALASALKELMEDSPFSKISVSDICQACDMNRKSFYYHFKDKYDLVNWIYYTECVAVLKEKDYCTEWELLEDLCAYFYKNRTFYRKTLSVDGQNSFSEYFRDILAAILGETMEDILGQDPHLDFYVEFYTDAFLCALKRWLLAKDCMPAEEFTTLLRSCLLKTSTAILQQLSPQQETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH94</accession>
    <name>R6YH94_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30749">
        <property type="protein sequence ID" value="CDD30749"/>
        <property type="gene ID" value="BN815_01953"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="6"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14551" checksum="FA5A167537C15ECA" modified="2013-07-24" version="1">MREAARKAGAEEFIQKLPQGYDTDIGPRGVKLSGGQRQRLSIARAFLKDPPILILDEATSALDSQSELVVQRSLEDLARHRTTLVIAHRLSTIQGAQRIVVLDENGVCEEGTHHSLMAQGGVYAKLYAASFQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHB3</accession>
    <name>R6YHB3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase for insertion sequence element IS200</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01973</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30769">
        <property type="protein sequence ID" value="CDD30769"/>
        <property type="gene ID" value="BN815_01973"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="1">
        <location>
            <begin position="12"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="17420" checksum="6096D3AC12402849" modified="2013-07-24" version="1">MIDVKQSLAHTTWNCKYHIVFAPKYRRKVFYKEKRREVGKILRTLCEWKKVKILEAEVCPDHVHMLLEIPPKVSVSSFMGYLKGKSSLMIYEKYPELKYKYRNREFWCRGYYVDTAGKNAKKIEEYIRHQLEEDKAGEQLTMGNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHM3</accession>
    <name>R6YHM3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC transporter substrate-binding protein family 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02066</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30904">
        <property type="protein sequence ID" value="CDD30904"/>
        <property type="gene ID" value="BN815_02066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425905" evidence="2">
        <location>
            <begin position="30"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="124"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="640" mass="70621" checksum="4BA69F11D8CBF0CD" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHU2</accession>
    <name>R6YHU2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4 5">30S ribosomal protein S12</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpsL</name>
        <name evidence="6" type="ORF">BN815_00768</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1 4 5">With S4 and S5 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the universal ribosomal protein uS12 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000078">
        <property type="protein sequence ID" value="CDD28116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28116">
        <property type="protein sequence ID" value="CDD28116"/>
        <property type="gene ID" value="BN815_00768"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03368">
        <property type="entry name" value="Ribosomal_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00403_B">
        <property type="entry name" value="Ribosomal_S12_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006032">
        <property type="entry name" value="Ribosomal_S12/S23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005679">
        <property type="entry name" value="Ribosomal_S12_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11652">
        <property type="entry name" value="PTHR11652"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00164">
        <property type="entry name" value="Ribosom_S12_S23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01034">
        <property type="entry name" value="RIBOSOMALS12"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00981">
        <property type="entry name" value="rpsL_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00055">
        <property type="entry name" value="RIBOSOMAL_S12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="4 5" id="KW-0820">tRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="15528" checksum="F8C08EE410233E70" modified="2013-07-24" version="1">MPTFNQLIHNGRSVAEKKSKAPALLKGWNSKKRVAIDQDSPQKRGVCTTVKTQTPKKPNSALRKIARVRLSNGIEVTAYIPGVGHNLQEHSVVMIRGGRVRDLPGVRYHIIRGTLDAQGVAKRMQARSKYGAKRPKAGAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHZ5</accession>
    <name>R6YHZ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Macrophage migration inhibitory factor (MIF)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00193</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-oxalocrotonate tautomerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000357">
        <property type="protein sequence ID" value="CDD31004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31004">
        <property type="protein sequence ID" value="CDD31004"/>
        <property type="gene ID" value="BN815_00193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001398">
        <property type="entry name" value="Macrophage_inhib_fac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11954">
        <property type="entry name" value="PTHR11954"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01187">
        <property type="entry name" value="MIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12760" checksum="13A97E59C188B959" modified="2013-07-24" version="1">MPCIQIKTNVEVSQEAAQAVKSALGQSIAHLPGKSEPWLMITLEDNCRMWFRGEDTKPLAMVEVKVLGDSVDKAGSRAMTQEICALFQKELGVAPQDMYIRYLATPDWGWNGGNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI44</accession>
    <name>R6YI44_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02217</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000369">
        <property type="protein sequence ID" value="CDD31064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31064">
        <property type="protein sequence ID" value="CDD31064"/>
        <property type="gene ID" value="BN815_02217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="33028" checksum="630A71A5C2CFC906" modified="2013-07-24" version="1">MSAAYTHRPRAFSSSRVEARLPTRATGRCSTAPAEALPTAQVRPTLRRLGMMTPWAPAHSAVRMMAPRLWGSSSSSQRTKKGGSPRSWASWNKSSTVAYSFTAATATTPWWLAPPQRWSSLRGSASLMAAPAALALATRAERAPERSPRWMYRLSMVRPARRASLTALRPAMMSAPRGSCSGWRFSRSFCKWATCPFPFENGPPGCPGPGPKLRFWHNIFALYHSFPEISNKNADKKGEKPVFFRQGRQGNPFWGIFFQNLQENSFLPLLACGLFHTAAPCNHRFHGGMWKTLWKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJE7</accession>
    <name>R6YJE7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Purine nucleoside phosphorylase</fullName>
            <ecNumber evidence="6">2.4.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Inosine-guanosine phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00399</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">Purine metabolism; purine nucleoside salvage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotrimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the PNP/MTAP phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31529">
        <property type="protein sequence ID" value="CDD31529"/>
        <property type="gene ID" value="BN815_00399"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00606"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004731">
        <property type="term" value="F:purine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009116">
        <property type="term" value="P:nucleoside metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09009">
        <property type="entry name" value="PNP-EcPNPII_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011270">
        <property type="entry name" value="Pur_Nuc_Pase_Ino/Guo-sp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011268">
        <property type="entry name" value="Purine_phosphorylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018099">
        <property type="entry name" value="Purine_phosphorylase-2_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11904">
        <property type="entry name" value="PTHR11904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000477">
        <property type="entry name" value="PurNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01700">
        <property type="entry name" value="PNPH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01697">
        <property type="entry name" value="PNPH-PUNA-XAPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01240">
        <property type="entry name" value="PNP_MTAP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="8">
        <location>
            <begin position="32"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphate binding" evidence="7">
        <location>
            <begin position="81"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="61"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>a purine D-ribonucleoside</name>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>a purine D-ribonucleoside</name>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000477-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="274" mass="29180" checksum="757160EA94D5435F" modified="2013-07-24" version="1">MLPYERLQACVAAIRQKTDFAPRTALVLGSGLGGFGERLALEAAVDYKDIPGFPVSTVPGHQGRFLFGFVGEEPVVAMQGRVHYYEGYAMEDVVLPIRVMGLLGAKRLVLTNAAGGIGPGLEAGDLMLLTGHIAAFVPSPLIGPNVEELGPRFPDMTEAYSPRLREKALAAARRLGIPLKEGVYLQTTGPQYETPAEIRMFAALGANAVGMSTACEAIAARHMGLEVCGISCITNLAAGLSGKELSHQEVQETADRVAQQFQSLVWELLSTVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJG0</accession>
    <name>R6YJG0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="8">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">lysS</name>
        <name evidence="11" type="ORF">BN815_00923</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8 9">Binds 3 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28696">
        <property type="protein sequence ID" value="CDD28696"/>
        <property type="gene ID" value="BN815_00923"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00775">
        <property type="entry name" value="LysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04322">
        <property type="entry name" value="LysRS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00252">
        <property type="entry name" value="Lys_tRNA_synth_class2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002313">
        <property type="entry name" value="Lys-tRNA-ligase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034762">
        <property type="entry name" value="Lys-tRNA-ligase_II_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044136">
        <property type="entry name" value="Lys-tRNA-ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018149">
        <property type="entry name" value="Lys-tRNA-synth_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039101">
        <property type="entry name" value="LysRS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00982">
        <property type="entry name" value="TRNASYNTHLYS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00499">
        <property type="entry name" value="lysS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="182"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="409"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="499" mass="56932" checksum="835E990CEF8E2368" modified="2013-07-24" version="1">MAEKNQKAPQAEEQDMSELLRVRREKLRELQESGNDPYQITKYPVDNDSANIKANFDQLEGKPVSIAGRMMSKRGMGKVSFCDLQDRSGRIQLYARKDEMDEAEYNRFKKYDIGDILGVQGVVFRTQRGEMSVRVEKVTLLSKSLLPLPEKYHGLKDTDARYRQRYVDLIVNPEVKDVFVKRSKIISAIREYLDSHAFLEVETPVLHNQAGGAAARPFITHHNTLDIDMYLRIALELHLKRLIVGGFDRVYEIGRTFRNEGMDTRHNPEFTMLEAYQAFTDFNGMMDLTEDMIRTVAHKVLGTGKVERDGVEIDLDKPFTRISMVEAVQKYAGVDFTQVETLEQARALAKEHHIEYEERHKKGDILNLFFETYCEDKLVQPTFLTGHPVDISPLSKRCKDNPEYTERFELFICGGEYVNAFSELNDPIDQRGRFEAQAALKAAGDEEACDVDEDFLTALEYGLPPTGGMGMGVDRLVMLLTGAASIRDVLLFPTMKPLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKU3</accession>
    <name>R6YKU3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01086</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000132">
        <property type="protein sequence ID" value="CDD29206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29206">
        <property type="protein sequence ID" value="CDD29206"/>
        <property type="gene ID" value="BN815_01086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="6"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="26594" checksum="BAE31D2E52CCE33F" modified="2013-07-24" version="1">MDQIVISASNLTKTFLGKEVIRNCTFSVERGSIYGFLGRNGAGKTTVLKLLLGLLKPSAGTASVLGLDSVRDNEAILRRTGSLIETPIFYEHLSAADNLRLHLAYMGIEDTDVEPTLCRVGLPGTGSQPVSTFSLGMRQRLAIARAIIHRPEVLILDEPVNGLDPVGMKEMRILFRRLVQEEGMTILMSSHLLPEIEQIADRVGVIVDGTVVQEAEMADIRKQHPSDMEDYFISLIQGGADHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKY7</accession>
    <name>R6YKY7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000138">
        <property type="protein sequence ID" value="CDD29251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29251">
        <property type="protein sequence ID" value="CDD29251"/>
        <property type="gene ID" value="BN815_01110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="18904" checksum="656628E8E80F3C4C" modified="2013-07-24" version="1">MGQATLFLMVGLPGSGKTTRAKELERETGAIRFTPDEWHLFLFGDDFHDPQEHELHNQRHDKVEALMWQVGKRLLAQGVSVILDFGFWAKEQREEKFREAQALGAGFAICYVHAPLEELCRRLEHRVQAGRKDVFQAISREDMERWAALFQPPDAGELRGEYGPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPU9</accession>
    <name>R6YPU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribose-phosphate diphosphokinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30596">
        <property type="protein sequence ID" value="CDD30596"/>
        <property type="gene ID" value="BN815_01807"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029099">
        <property type="entry name" value="Pribosyltran_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13793">
        <property type="entry name" value="Pribosyltran_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran_N" evidence="1">
        <location>
            <begin position="19"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="19206" checksum="6C2077B56BDA9D03" modified="2013-07-24" version="1">MEQSAQFFFSPENRVAPLGIVAMEGAQELADKIEAHLVRWANQAGMNIDTFRIGCSCPRFSSGDGKGILESSVRGYDLYFVVDVGNYSCTYKYFGQENHMSPDDHYQDLKRLIQAAMGKAHRITVVMPLLYGGRQHRRSYXXXAAPPQLPGIFGLRLRAAGAAIHGRGQRGHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPY1</accession>
    <name>R6YPY1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribosome maturation factor RimM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rimM</name>
        <name evidence="6" type="ORF">BN815_01853</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Binds ribosomal protein S19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="3">The PRC barrel domain binds ribosomal protein S19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RimM family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30646">
        <property type="protein sequence ID" value="CDD30646"/>
        <property type="gene ID" value="BN815_01853"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00014">
        <property type="entry name" value="Ribosome_mat_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011961">
        <property type="entry name" value="16S_RimM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002676">
        <property type="entry name" value="RimM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036976">
        <property type="entry name" value="RimM_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01782">
        <property type="entry name" value="RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02273">
        <property type="entry name" value="16S_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="RimM" evidence="4">
        <location>
            <begin position="8"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="PRC" evidence="5">
        <location>
            <begin position="93"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="19253" checksum="2126419DA5742F6B" modified="2013-07-24" version="1">MKHQFLEAGRIVRTHGVRGELVLECWADSPEFVAGVKHLYFDGGKTDAGVVSSRVHKGRLLLKLRGVDTVEQGDALRGKVLYLNREDVRLEEGQVFLQDLIGLKAIDGTTGREYGVLQEVLPTGANDVYRIVDGAGKEYLFPAVKHMIQEISLEEGVIRLLPIPGIFDQEGEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ33</accession>
    <name>R6YQ33_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01911</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30706">
        <property type="protein sequence ID" value="CDD30706"/>
        <property type="gene ID" value="BN815_01911"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Toprim" evidence="5">
        <location>
            <begin position="434"/>
            <end position="557"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="660" mass="75038" checksum="DBB7C75431B1B9B7" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQN6</accession>
    <name>R6YQN6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30886">
        <property type="protein sequence ID" value="CDD30886"/>
        <property type="gene ID" value="BN815_00189"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="23555" checksum="2D367A911E4FEA4C" modified="2013-07-24" version="1">MRCQALTMRILFSGDTRAYTEMFSTSWSSCSSLMASSWAPVMALSPSSRMPSSLAMAEAVTTWSPVIITGLMPAWRQVATAALASGRGGSIMPTRPIRVRPLSSSSLVGFSGTSSRILYPTASTRRASRLISSFFSLAASKSPATHRAAIMSKAPLTMATIFPSIWLTEVISFLSESKGSSAKRGYWLFKSSCSMPFLWAATRMEVSVGSPMCCSAPSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQS1</accession>
    <name>R6YQS1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">D-galactarate dehydratase/Altronate hydrolase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02078</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UxaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30916">
        <property type="protein sequence ID" value="CDD30916"/>
        <property type="gene ID" value="BN815_02078"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11613">
        <property type="entry name" value="SAF_AH_GD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007392">
        <property type="entry name" value="Gal/Altron_deHydtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044144">
        <property type="entry name" value="UxaA/GarD_SAF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04295">
        <property type="entry name" value="GD_AH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08666">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAF" evidence="3">
        <location>
            <begin position="10"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="466" mass="49890" checksum="FAC852964A850242" modified="2013-07-24" version="1">MSLRVIDPRDNVAVQIGEGGAVPSGHKVARRAIAQGEFVIKYGEIIGRATQDIAPGEWVHTHNLRSHLDEGAEYHYQFQPVSLPPREGSFWGYPRPWGDVGIRNEIYILPTVGCVNPICQRLAQEAQPLVGGSLDGIFALPHQFGCSQLGEDGENIQKLLCSIALNPNASFVLFVGLGCENNSLEGIRQALSPFQRDNMAFLNCQEAEDELAAGLEILKGFAEKARALRREQVPLSKLRIGLKCGGSDGYSGLTANPLVGQVTDWVIAAGGSAVLTEVPEMFGAEQLLMDRCASREVFEDYRGLILRFQKYYTDLGFPVYENPSPGNKAGGITTLEEKSLGCVKKGGSAPIVEVLPYGGRASKPGLAVLEGPGNDLISSTALGAAGCQLVLFTTGRGTPFSTFVPTLKIASNSGLAGRKGSWIDFDAAPGDGEALYRLVLDTASGAYRCKSEGFQEIAFHKTGVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRC2</accession>
    <name>R6YRC2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Conserved protein/domain typically associated with flavoprotein oxygenases DIM6/NTAB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00200</name>
        <name evidence="2" type="ORF">BN815_00601</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000034">
        <property type="protein sequence ID" value="CDD27351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27351">
        <property type="protein sequence ID" value="CDD27351"/>
        <property type="gene ID" value="BN815_00601"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31116">
        <property type="protein sequence ID" value="CDD31116"/>
        <property type="gene ID" value="BN815_00200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="9"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="188" mass="20522" checksum="9A2603FBAFC21787" modified="2013-07-24" version="1">MRKELNITEGIFPMPVLMVATYNEDGTVNVMNAAWVTMQERDTVALNLTESHKTVKNIKARGGFTVSIADAAHVVEADYFGVASGNTVADKLSVAGLTATKSEKVDAPIINEFPLCLECEFVEYQTNEYGCGVIGKVVKVTADESVMRDGKLDMSLVNAIAFDPYTHGYYKVAERVGEAFKDGLQLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRC4</accession>
    <name>R6YRC4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Trypsin-like serine protease with C-terminal PDZ domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00205</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase S1C family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31121">
        <property type="protein sequence ID" value="CDD31121"/>
        <property type="gene ID" value="BN815_00205"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="6">
        <location>
            <begin position="295"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="403"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="43728" checksum="F060DD3361122D75" modified="2013-07-24" version="1">MELQTENGKKKVPLSTGLKWLRLVCMAVVFGIIAGGVMVGMNYLGGSMAAEEESIPQTSTVKVTAKAEDSDAVVAVAREAMPSVVTISTMSVEEMRSFFGGTQEIQVQGAGTGVIVNKNESELLIATNNHVVEGASQLSVGFVDQSSVEAQVKGTDVDNDLAVVAVQLSDIPAETLSQLKIATIGDSDELELGQPVVAIGNALGYGQSVTTGVVSALNRDLSLTDESGTAITSTGLIQTDAAINPGNSGGALLNMAGELIGINEAKTSSSGSGGSVDNIGFAIPIDKAEDSLKELMNLPTREKVDPSEASYLGIEGETITQDITQLYGIPTGVGVVAVEQGSPAEKAGIQQGDVITQFDGRAVANQQQLSDTLQYYKAGKTVDVTLQRADNGQYAGQTVSVTLGSAKEMPQESGASSTAESSDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRE7</accession>
    <name>R6YRE7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">DNA repair protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">radA</name>
        <name evidence="8" type="ORF">BN815_02300</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.</text>
    </comment>
    <comment type="function">
        <text evidence="5">Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the RecA family. RadA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31156">
        <property type="protein sequence ID" value="CDD31156"/>
        <property type="gene ID" value="BN815_02300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01121">
        <property type="entry name" value="Sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01498">
        <property type="entry name" value="RadA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004504">
        <property type="entry name" value="DNA_repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041166">
        <property type="entry name" value="Rubredoxin_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18073">
        <property type="entry name" value="Rubredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00416">
        <property type="entry name" value="sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 6" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RECA_2" evidence="7">
        <location>
            <begin position="68"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="region of interest" description="Lon-protease-like" evidence="5">
        <location>
            <begin position="352"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RadA KNRFG motif" evidence="5">
        <location>
            <begin position="253"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="97"/>
            <end position="104"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="456" mass="49602" checksum="AA58D4ADD9CA5E00" modified="2013-07-24" version="1">MAGKSKLIYQCRECGFESAKWMGKCPSCGEWNSFEEAIKEPAVPQKKVAGTGGRLSRPTPISEISTVEEARYHTGLSELDRVLGGGIVKGSLILISGDPGIGKSTMLLQICEHLGQSLRILYVSGEESARQIKLRAARLGVQSPNLMVLTETDVQYVIEEIRSEQPDLVMIDSIQTMNHTDLNSSPGSVTQVRECTNAMMRCAKSLDIPILVVGHVNKDGAIAGPKVLEHIVDAVLYFEGDRQMTYRILRAVKNRYGSTNEIGVFDMGENGLQQVENPSQAMLSGRPKDVSGTCVTAVMEGTRPILAEIQGLATTSGYGNPRRMATGFDYNRMALILAVLEKRAGYYFSNLDAYINVVGGLRLDEPSVDLAVAMSLISSLKDTPIREDTVVFGEIGLAGELRSVNHVDQRIGEAARLGFTRCVLPYHSLKNLGASRTQGMEIIGAKNIREAFEAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRK6</accession>
    <name>R6YRK6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lspA</name>
        <name evidence="10" type="ORF">BN815_02370</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31226">
        <property type="protein sequence ID" value="CDD31226"/>
        <property type="gene ID" value="BN815_02370"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00855">
        <property type="entry name" value="SPASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="224" mass="24896" checksum="FDF4E17677622723" modified="2013-07-24" version="1">MRKEKPPVSLFSPFPGKQRPLGKNSRGRRSLWLPGKXXAALPLAAVKKENTFTLKTENKNRNTATAVVVLAVAAVLLAIDQILKYFVLRDLRPVGTVTVIPGLLELTYVENTGAAFGLFKQVMWLVVAVTVVATVAIIVLLFRYKRHSFFSYTTAALLMSGGIGNLIDRIAHGFVVDYIHVLFFDYVFNFADCCITVGAVLFVIHVLFFTREGKETLPREPESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRP9</accession>
    <name>R6YRP9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative regulatory protein BN815_02409</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02409</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RemA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31266">
        <property type="protein sequence ID" value="CDD31266"/>
        <property type="gene ID" value="BN815_02409"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01503">
        <property type="entry name" value="RemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007169">
        <property type="entry name" value="RemA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38449">
        <property type="entry name" value="PTHR38449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04025">
        <property type="entry name" value="DUF370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="90" mass="9702" checksum="1E100B9003AD95AA" modified="2013-07-24" version="1">MKLVNIGFGNLVSADKVVAVVSPESAPIKRMVQEAKERGVLIDATFGRRTKAVLIMDSDNVVLSAILPETVAGRFNGKEEPAPEEEEKHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSI6</accession>
    <name>R6YSI6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5 7">50S ribosomal protein L16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplP</name>
        <name evidence="9" type="ORF">BN815_00372</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 7">Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31496">
        <property type="protein sequence ID" value="CDD31496"/>
        <property type="gene ID" value="BN815_00372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01342">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_L10e/L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_L10e/L16_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000114">
        <property type="entry name" value="Ribosomal_L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020798">
        <property type="entry name" value="Ribosomal_L16_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12220">
        <property type="entry name" value="PTHR12220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00060">
        <property type="entry name" value="RIBOSOMALL16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="SSF54686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01164">
        <property type="entry name" value="rplP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00586">
        <property type="entry name" value="RIBOSOMAL_L16_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00701">
        <property type="entry name" value="RIBOSOMAL_L16_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="5 7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L16" evidence="8">
        <location>
            <begin position="4"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15787" checksum="0F2C3F130E35D5AE" modified="2013-07-24" version="1">MLLPKRVKYRRVQRGRMKGKALRGNKVTYGDFGLQALEPAWITSNQIEAARVAMTRYCKRFGKVWIKIFPDKPVTQKPAETRMGSGKGSPEYWVAVVKPGRVMFELGGVNEATAREALRLAANKLPIKCKFVTKETEASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z970</accession>
    <name>R6Z970_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27012">
        <property type="protein sequence ID" value="CDD27012"/>
        <property type="gene ID" value="BN815_00486"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="7"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="14480" checksum="3AAD549FC2622474" modified="2013-07-24" version="1">MSKWIDGVHHIALTPTVEQYDELVKFYTQLLGLEITRSWGDPQHPCLMISCGDNSCLEILPGDEAVSRGGALAHLAFATTKVDELIERVREAGYEIAYEPYDTDAIGAPIHIAFCYGPIGEYIEFFWEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9B4</accession>
    <name>R6Z9B4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">UDP-galactopyranose mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00498</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UDP-galactopyranose/dTDP-fucopyranose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000009">
        <property type="protein sequence ID" value="CDD27062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27062">
        <property type="protein sequence ID" value="CDD27062"/>
        <property type="gene ID" value="BN815_00498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008767">
        <property type="term" value="F:UDP-galactopyranose mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004379">
        <property type="entry name" value="UDP-GALP_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015899">
        <property type="entry name" value="UDP-GalPyranose_mutase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03275">
        <property type="entry name" value="GLF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00031">
        <property type="entry name" value="UDP-GALP_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GLF" evidence="4">
        <location>
            <begin position="147"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="371" mass="42920" checksum="B558DD23C3A26564" modified="2013-07-24" version="1">MKYDYLIVGAGLYGAAFAQQMTAAGKRCLVIDRRPHLAGNAHCQEVEGILVHAYGAHIFHTADEEVWEYVNRYGKFNHYVNSPVAIYHNELYNLPFNMNTFSKLWGVLTPGEAQAEIQRQSSRHAIDEPQNLEEQALKLVGDDIYQKLIKGYTEKQWGRDCKDLPAFILRRVPLRFTYDNNYFTDPHQGIPTEGYDVLVQRLLAGSDVLLSTCYRDFVEKHPHIAHKTVYTGTIDGFFGYCYGPLEYRSLRFETETLDMANYQGNAVVNYTAREVPYTRIIEHKHFTFGQQEKTVITREYPAPWQPGEEPYYPVNDGKNQALLARYQQLAQSRPEVRFGGRLGSYRYYNMDQVIRAALDDAREELAERQRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9N9</accession>
    <name>R6Z9N9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Tagatose-6-phosphate kinase</fullName>
            <ecNumber evidence="2">2.7.1.144</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00539</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + D-tagatofuranose 6-phosphate = ADP + D-tagatofuranose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12420"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58694"/>
            <dbReference type="ChEBI" id="CHEBI:58695"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.144"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; D-tagatose 6-phosphate degradation; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-tagatose 6-phosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the carbohydrate kinase PfkB family. LacC subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbohydrate kinase pfkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.144" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27202">
        <property type="protein sequence ID" value="CDD27202"/>
        <property type="gene ID" value="BN815_00539"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00704">
        <property type="reaction ID" value="UER00715"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008662">
        <property type="term" value="F:1-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009024">
        <property type="term" value="F:tagatose-6-phosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001059">
        <property type="term" value="P:D-tagatose 6-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005988">
        <property type="term" value="P:lactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01164">
        <property type="entry name" value="FruK_PfkB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022463">
        <property type="entry name" value="1-PFruKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017583">
        <property type="entry name" value="Tagatose/fructose_Pkinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000535">
        <property type="entry name" value="1PFK/6PFK/LacC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03168">
        <property type="entry name" value="1-PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03828">
        <property type="entry name" value="pfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0423">Lactose metabolism</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="14"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005380"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="32682" checksum="882FC0B84322884D" modified="2013-07-24" version="1">MILTVTLNASIDKLYLVEKLAPYSVSRVQEVVNTAGGKGLNVSRVAALAGGHVTAMGFVGGYNGQLFQSLITTPGIAPAFTQVQGETRCCINVRDRETNQSTEFLEPGNPVSQGELERFLADYQSQLGQAEVVAISGSMPKGVPGDFYATLCRLAKAQGKKVIVDSSGSALREALPGGPDLVKPNDEELCQLTGQDTSTVEGCIQAAQSLRALGAGAVAVSRGKDGVLVVSLQGVYQGRPPRIQVVNTVGCGDSMVAGFATGFAQGWELPQAIRYAVAISAANALTKETGCFQPEDLERLLPQVTVEQLEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA65</accession>
    <name>R6ZA65_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycoside hydrolase family 32 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27362">
        <property type="protein sequence ID" value="CDD27362"/>
        <property type="gene ID" value="BN815_00603"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013189">
        <property type="entry name" value="Glyco_hydro_32_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08244">
        <property type="entry name" value="Glyco_hydro_32C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_32C" evidence="1">
        <location>
            <begin position="17"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="16923" checksum="F9C5AFA0A2E3D416" modified="2013-07-24" version="1">MMIDTPYARQEQILFNDTTDLFRFEADVEFSEGTRSFGLRFYENEETSQSYQYLFNIEENRYRFEKSPNMPWPANQNIGLERPIRLEAGKKYHIQMILDDTIATIYVDGVALNTRFYQKFGQSLSLFVTDGTLTVTNAGLSKTIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAA5</accession>
    <name>R6ZAA5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00617</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27397">
        <property type="protein sequence ID" value="CDD27397"/>
        <property type="gene ID" value="BN815_00617"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046082">
        <property type="entry name" value="DUF6100"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19595">
        <property type="entry name" value="DUF6100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="226" mass="25893" checksum="F83B65D2B65E79CA" modified="2013-07-24" version="1">MVPPSFQKTLFQLENKLRQMQTLERTVLQAAALEDENVAYCTASQLADACEQAVLLARALPACTGRPHVFFELEQQIDCQTPVEIGFTWEGWFSLRMPMLLPKKERGSAAFVRMLLLPALRRFFQGKPPVRISPCVLVFRHVYARDRPDRALRDHDNIETNMAADCVALYVMEDDNPAACSQYECTAKGDRERTEIYVVPQTEFPQWLLSEKSMPEEGVELLRNRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBA4</accession>
    <name>R6ZBA4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="4">OPRT</shortName>
            <shortName evidence="4">OPRTase</shortName>
            <ecNumber evidence="2 4">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrE</name>
        <name evidence="6" type="ORF">BN815_00711</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + orotidine 5'-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + orotate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 4"/>
    <dbReference type="EMBL" id="CBGU010000061">
        <property type="protein sequence ID" value="CDD27752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27752">
        <property type="protein sequence ID" value="CDD27752"/>
        <property type="gene ID" value="BN815_00711"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="47"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="74"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="128"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="24452" checksum="ED67A2940790F0EE" modified="2013-07-24" version="1">MLTEKKKEFIEFMLSAQVLRFGHFVTKSGRNTQYFVNTGNYKTGAQLSRLGSYYAQLVKDTVGGEFEAMFGPAYKGIPLASACSIALYNDHGIDKPYFFNRKEVKDHGEGGGTVGYAPQDGDRIIIIEDVITAGTAVRETMPILKACADVQVPHMFISVDRCEVGHTPGKTAIMEVEEEFGVKVHPIVTVVDIHEYLKEHGTDPELLKAMEGYMEQYCVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBT2</accession>
    <name>R6ZBT2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">GMP synthase [glutamine-hydrolyzing]</fullName>
            <ecNumber evidence="9">6.3.5.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">GMP synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Glutamine amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">guaA</name>
        <name evidence="12" type="ORF">BN815_00733</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Catalyzes the synthesis of GMP from XMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + H2O + L-glutamine + XMP = AMP + diphosphate + GMP + 2 H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:11680"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Purine metabolism; GMP biosynthesis; GMP from XMP (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.2" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000071">
        <property type="protein sequence ID" value="CDD27937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27937">
        <property type="protein sequence ID" value="CDD27937"/>
        <property type="gene ID" value="BN815_00733"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00189">
        <property type="reaction ID" value="UER00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003922">
        <property type="term" value="F:GMP synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016462">
        <property type="term" value="F:pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01742">
        <property type="entry name" value="GATase1_GMP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01997">
        <property type="entry name" value="GMP_synthase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00344">
        <property type="entry name" value="GMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001674">
        <property type="entry name" value="GMP_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004739">
        <property type="entry name" value="GMP_synth_GATase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022955">
        <property type="entry name" value="GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025777">
        <property type="entry name" value="GMPS_ATP_PPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00958">
        <property type="entry name" value="GMP_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00884">
        <property type="entry name" value="guaA_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00888">
        <property type="entry name" value="guaA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51553">
        <property type="entry name" value="GMPS_ATP_PPASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 9 10" id="KW-0332">GMP biosynthesis</keyword>
    <keyword evidence="3 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMPS ATP-PPase" evidence="11">
        <location>
            <begin position="196"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="9">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="223"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD27937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="511" mass="56524" checksum="F9AD19A4CC25D322" modified="2013-07-24" version="1">MANNAHERVVVLDFGGQYAQLIARRVRDLGVYCEIKSYKTNPEELRDCKGILFTGGPNSVYAQDAPLCSKEVFELGIPVLGICYGAQVMAYLLGGTVSSSEVPEFGKTMTQFKSDSPLFQNVGESVCWMSHNDYISQLPEGFTASAWSAHCPAAAMENVERKLYATQFHPEVEHTQQGSEMFRNFLYNICGCAGDWEMKSFAQETIAAIRERVGDKKVLCGLSGGVDSSVAAMLVHKAIGKNLTCIFVDHGLLRKDEGDMVEQVFKKEFDMNIIRVNAADRFFSKLSGVTDPERKRKIIGEEFVRVFEAESEKLGKMDFLCQGTIYPDVVESGTGQAAVIKSHHNVGGLPEDIGFEGLVEPLRDLFKDEVRRVGLELGIPSELVWRQPFPGPGLAVRIMGEVTPEKVKLLQDADAIFREEVANAGLERSVNQYFAVLTANRSVGVMGDGRTYGVTVALRAVTTTDFMTADWAHLPYDLLGRTSNRIINEVEGVNRVVYDITSKPPATIEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCB5</accession>
    <name>R6ZCB5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polysaccharide deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00059</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28142">
        <property type="protein sequence ID" value="CDD28142"/>
        <property type="gene ID" value="BN815_00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438362" evidence="1">
        <location>
            <begin position="29"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="NodB homology" evidence="2">
        <location>
            <begin position="117"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="34775" checksum="9ABBC2048E881E35" modified="2013-07-24" version="1">MKRKMCGRPLLSCLLAVLLCIGAAPAQAAETPASEKSGAVNWVETVDEGILQEPVEIPILMYHNLVAEEDDPSISKNTMWVGQFQHQMELLEENGFTTITVDQLVEFGNRGKALPEKPVLITFDDGYRSAYELAFPILQEMDFHAAMFPIGVSVGKDTYKDTGLAMVPHFSWEEAKEMAESGLVSIQSHTYDMHQWEAFETAGGGQCLRPNILRQPWETLGEYMQALREDVERSRQDIVEGTGQEAVALAYPGGLHDQISEELLRSYGVKCTFTIEGGKAQVTPGSERSLYGLNRFYVKPTTTDEEFLQWVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZD21</accession>
    <name>R6ZD21_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00841</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28407">
        <property type="protein sequence ID" value="CDD28407"/>
        <property type="gene ID" value="BN815_00841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd11532">
        <property type="entry name" value="NTP-PPase_COG4997"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038735">
        <property type="entry name" value="MSMEG_1276-like_NTP-PPase_dom"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="12603" checksum="4C71BEDF73C7E9A4" modified="2013-07-24" version="1">MKEHIYNKLVRDNVPDIIREQGGTPVIRTLGDEEYVQCLENKLREEVGEFLEERTLDELGDIIEVLEELAHLQGWTDWEIRHARSEKAQRNGIFRERIFLEKVLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEI3</accession>
    <name>R6ZEI3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Conserved domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00999</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28922">
        <property type="protein sequence ID" value="CDD28922"/>
        <property type="gene ID" value="BN815_00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023811">
        <property type="entry name" value="CHP04076"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04076">
        <property type="entry name" value="TIGR04076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="85" mass="9372" checksum="0D0A38534D62BF52" modified="2013-07-24" version="1">MAKAKITLTLVGRLGPCRCHHGHQVGDTFDFDTDRGKLCPMALHAGFPYIDILRYGGKPPLSRAGDIRFCCPDADVANVFRIQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHL3</accession>
    <name>R6ZHL3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DRTGG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01320</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29947">
        <property type="protein sequence ID" value="CDD29947"/>
        <property type="gene ID" value="BN815_01320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010766">
        <property type="entry name" value="DRTGG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028979">
        <property type="entry name" value="Ser_kin/Pase_Hpr-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07085">
        <property type="entry name" value="DRTGG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75138">
        <property type="entry name" value="SSF75138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DRTGG" evidence="1">
        <location>
            <begin position="5"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="12845" checksum="9E89625CCF915D7F" modified="2013-07-24" version="1">MKVKDIVDILKCQVLNEGDMEEEVKTACGSDMMSDVLAFVKDQSVLLTGLMNPQVVRTAEMMDMHCIVFVRGKKIDPNVVALARQKEITVLASPYRMFTACGLLYSNGLRGGCEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI87</accession>
    <name>R6ZI87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01407</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30162">
        <property type="protein sequence ID" value="CDD30162"/>
        <property type="gene ID" value="BN815_01407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="74"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="274" mass="31701" checksum="96D405E888676CB1" modified="2013-07-24" version="1">MKKYFSIGEAAKAAHTTAETLRHYDRIGLVKPSKKDGWTQYRYYTEQDIVRVNTVRALQLMDLPLQEIKKVLEYDDLEKIIAFFEQAEKKADEKIAALQFSKEKIQLAKADYVRHLELQRQSRSAFLKEYPQRVLLLSDTLEKPTLDNLWNYLSHFYETLPPALREQFSFEDAAGIYTEGGSSRLFAICTQYQQVEGLKTLPAGWYLCANCAEEAREQTLQELLRLAQAQYGAHPTFTVQLIVVSGILHWNYEVQVYVGAGRLQTGERPHKWDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZID9</accession>
    <name>R6ZID9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01460</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30217">
        <property type="protein sequence ID" value="CDD30217"/>
        <property type="gene ID" value="BN815_01460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426747" evidence="1">
        <location>
            <begin position="22"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="112" mass="12427" checksum="E882C280BBB5DF21" modified="2013-07-24" version="1">MKKALAFLISVALLVAPAGCAAEHGQLTLERVEQLAEKGEALTWSDFEGYAYEEAGSGLYIRVYDVNEEYYVMVGGPSLEESPLYVRLVSRDNEEQYVELREGGLEGFLQGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIG5</accession>
    <name>R6ZIG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01490</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30247">
        <property type="protein sequence ID" value="CDD30247"/>
        <property type="gene ID" value="BN815_01490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="375" mass="43414" checksum="5B29098E4D467861" modified="2013-07-24" version="1">MPSNLTQMSAAEYDKILYGNMTPSMAAAYLQERDIPLRNFPQVLQSMYPGADLLPRLVEYLSRIGPEEGGASVQSLGKKAHNWLSGRNVPANREDYFRIAFALGLGESQLNTLLGLFTDYGIQYRDGRELVFAWFLRHGHGYLDALRFYEALPIAPGMERLEPGRNSQLTHELHNRFQLIQTTEELRHCYLENLEYFGSLHLRAYYYFQGYLDQLIHPVPSWDDGKEPDYSIETVMNTYLSMQVPSGAKRSHYSLIQKLIRQNWPNTTALNNIRNHKLDVPRKLLLLLYVVTENTGDTGDPYRELDESYITLEERLEDHWWTLNAMLSDCGMAPLDLRNPFDWLILYAICADESEYMSDRMEQVLAHLFPENKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ29</accession>
    <name>R6ZJ29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01679</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000248">
        <property type="protein sequence ID" value="CDD30462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30462">
        <property type="protein sequence ID" value="CDD30462"/>
        <property type="gene ID" value="BN815_01679"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="213" mass="21263" checksum="021DC5D5AB269CA5" modified="2013-07-24" version="1">MEPGGAPVLAVAVVPLALVDAGQGTVKPVLALGEQGRAAHLAESQAAPGFVVDKLQVGPCHQDGVPLFPGLEGLGGGDGALLPIGLGALGGELRLVHQVPCRGPGGGIFSAGVEVPEGLPADQVPVIGELQALLAAGGHTQPLQGAGLHHLAVAEQLPGESELGQILCEALVVEVVAAEHPVPLLVLEVQRRLADFHLLGGGLLLQAGENNAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJC4</accession>
    <name>R6ZJC4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease HI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01760</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase H family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30547">
        <property type="protein sequence ID" value="CDD30547"/>
        <property type="gene ID" value="BN815_01760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.970.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011320">
        <property type="entry name" value="RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037056">
        <property type="entry name" value="RNase_H1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01693">
        <property type="entry name" value="Cauli_VI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="2">
        <location>
            <begin position="67"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22974" checksum="23E4610D3755ED3B" modified="2013-07-24" version="1">MAKKFYAVKNGKNGDGIYDSWEACKAQVHGVKSVVFKGFPTRAEAEDFLQRAGASTTEGEALENPQREGVAVAYVDGSFSKDTGEFACGAVLFWQGERVLFSKKYNDPALAEMHNVAGEILGAVAVIRYCLDKGIPALEIHHDYEGVGKWATGLWKANKPGTQAYAALCKQAMERLQLSFVKVKGHSGNQWNDLADQLARRALGKEKSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKP3</accession>
    <name>R6ZKP3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD31002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31002">
        <property type="protein sequence ID" value="CDD31002"/>
        <property type="gene ID" value="BN815_02161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="25358" checksum="254C6665B1A0D9AF" modified="2013-07-24" version="1">MEHFKLIITIVDRGKGGKAVDLYRKHHLHFDFACLGAGTASSKILNYFGLDETAKELVWTLSPASRIPRILPEARRVLDLDTPGKGILFTVPLSGVSAQIPPVLIKPEYEKEEPTMEEAKTTPKGHPYHLVLAIVNRGCSEQVMEAARPAGARGGTVILARRVGYEDVQNMLGFTLQPEKEIVAILLPQEQKLPVMQAINREAGLKTDCQGVLFSLPVDDIMGLQELLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKY3</accession>
    <name>R6ZKY3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M16 inactive domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31107">
        <property type="protein sequence ID" value="CDD31107"/>
        <property type="gene ID" value="BN815_02260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16_C" evidence="1">
        <location>
            <begin position="222"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="421" mass="46169" checksum="BC08FDE869B0ACB3" modified="2013-07-24" version="1">MSVLQSQRLSDAVTLHTFTDPRFKTMKVSVNLFLPLEQATAARNAILPSLASRATRAYPDYTALNGRLAQLYGASLSNSVRKMGDFQVLSLSANGISSRYAFGGEDMFAQLTGLLFDVLFDPLKDQEGLFPEDGFRQEQRQLLEMLDSEYNDKMVYAHQRCEELLFQGQNAGLGRCGSRADVEALERRAVTAGWEELLQNAKIEIFALGDCVPDVEAFRARFAGLGKAQPTGLLAYQAPGEARRLTEEQPLSQSKLSMAYLADYTPEERPLFRLMAAALGGVPSSKLFQNVREKMSLCYYCSTGMGAGNRAMFIESGVETANLERAEEAICQQLAALQQGELTEEELLSAKLALVNSQRSVTDSLAAVEGSYLGQAFNGYVLSQEEAVQQILSYTREQVVEAAGRLRLAAVYTLKGGAQHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLG0</accession>
    <name>R6ZLG0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Citrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00225</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31287">
        <property type="protein sequence ID" value="CDD31287"/>
        <property type="gene ID" value="BN815_00225"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004680">
        <property type="entry name" value="Cit_transptr-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03600">
        <property type="entry name" value="CitMHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="335"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="CitMHS" evidence="7">
        <location>
            <begin position="6"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="358" mass="38767" checksum="8438A256654D779F" modified="2013-07-24" version="1">MLCASLVLAVLTAFAVPPDWAYLSYPDYRTLALLFCLMLIVAGFRSLGVFQRLGGWLLRRAGGFRGLSFALTLLCFFSSMVITNDVTLITFVPFTLLVTRGVSRKGSVLSLVVFETIAANLGSMATPIGNPQNLYLYSVADMGFAQFAWAVLPYTGISLVLLAAALLFQKEEPVREFASQAPGEKLPLPPLLAMLFCLALCLLVVFRVVGYLPVLVCVALVTLLVDRRLYGAVDYALLLTFLCFFIFVGNIKRLPEVNSLLQSLVGGRELWAGILASQVISNVPAAILLSGFTGSYGVLLTAVNLGGLGTPIASLASLISFKFCAREYPGQMGRFFRIFTVWNLLFLAVLTGVAVLLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLJ4</accession>
    <name>R6ZLJ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">AAA-ATPase_like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00257</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000400">
        <property type="protein sequence ID" value="CDD31322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31322">
        <property type="protein sequence ID" value="CDD31322"/>
        <property type="gene ID" value="BN815_00257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018631">
        <property type="entry name" value="AAA-ATPase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09820">
        <property type="entry name" value="AAA-ATPase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA-ATPase_like" evidence="2">
        <location>
            <begin position="4"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="327"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="362" mass="40584" checksum="0B06079DB4F5C6C6" modified="2013-07-24" version="1">MKLPIGLDSFEKIRTNDFYYVDKTLFIKELLENWGEVNQFTRPRRFGKSLNMSMLKSFFEVGGDPALFDGLKISREKELCGKYQGKFPVISISLKGVDGRSFFSASAALRTIIGNEAMRFQFLKESEKLSNEEKEAYRRLIQIGSGEGGLYAMTEEVAAASLKVLSQLLAKHCGQKAILLVDEYDVPLDKAFQAGYYEEMVDLIRNLLGNVLKTNDSLFFAVLTGCLRISKESIFTGLNNLKIHTISDVRYDEFFGFTDGDVEELLEYYGLPAYKEAVRAWYDGYRFGNTDVYCPWDDQLLRRAAGGPVCSAQKLLGQYQRQRLDPAAAAAGKSKRQGRGGGTAWRGTGHQTGEAGADVPRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLY3</accession>
    <name>R6ZLY3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00357</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000424">
        <property type="protein sequence ID" value="CDD31462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31462">
        <property type="protein sequence ID" value="CDD31462"/>
        <property type="gene ID" value="BN815_00357"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="10338" checksum="4557D146924796E5" modified="2013-07-24" version="1">MFGFYELRNQYTLWKFLIDEKYQNKGYGKMALALGIEYMKKQYDIKEMYTGVAIDNDVAERLYHSVGFQLTGLIENGMKELRYVCKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUQ5</accession>
    <name>R6XUQ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000043">
        <property type="protein sequence ID" value="CDD27458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27458">
        <property type="protein sequence ID" value="CDD27458"/>
        <property type="gene ID" value="BN815_00632"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="66" mass="7286" checksum="5DDC6B1DB5C566C8" modified="2013-07-24" version="1">MERLDPETGTQRLVNLVNAWTHEIKEMMGGMGINSIEAARGNRLMLRGVGLTEAELRVLGVRHAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUT4</accession>
    <name>R6XUT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27488">
        <property type="protein sequence ID" value="CDD27488"/>
        <property type="gene ID" value="BN815_00031"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="8493" checksum="50B480398F123D4E" modified="2013-07-24" version="1">MNKHCDLCLYSYETKDRESRLPCRKLRQHCCNPHYNARPYSFPRYYEGWNTDYCRFWTPRYERRETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV10</accession>
    <name>R6XV10_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Addiction module toxin RelE/StbE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00648</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27533">
        <property type="protein sequence ID" value="CDD27533"/>
        <property type="gene ID" value="BN815_00648"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="69" mass="7582" checksum="5B5ABCDE23BD6C5B" modified="2013-07-24" version="1">MNKLHISDDARQDLVEIKQYIAEDLDSPNAAAQTVKGILKGITRLKEQSGIGAPLSSIVPVESEYRFLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV75</accession>
    <name>R6XV75_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00680</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="MEROPS" id="M03.010"/>
    <dbReference type="EnsemblBacteria" id="CDD27633">
        <property type="protein sequence ID" value="CDD27633"/>
        <property type="gene ID" value="BN815_00680"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011976">
        <property type="entry name" value="Pept_M3B_oligopep-rel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02289">
        <property type="entry name" value="M3_not_pepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3" evidence="7">
        <location>
            <begin position="165"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M3" evidence="7">
        <location>
            <begin position="315"/>
            <end position="542"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="565" mass="64793" checksum="935E4E9AF36B9363" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWI8</accession>
    <name>R6XWI8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">YigZ family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IMPACT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28093">
        <property type="protein sequence ID" value="CDD28093"/>
        <property type="gene ID" value="BN815_00760"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023582">
        <property type="entry name" value="Impact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001498">
        <property type="entry name" value="Impact_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036956">
        <property type="entry name" value="Impact_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015269">
        <property type="entry name" value="UPF0029_Impact_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16301">
        <property type="entry name" value="PTHR16301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09186">
        <property type="entry name" value="DUF1949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01205">
        <property type="entry name" value="UPF0029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0029" evidence="2">
        <location>
            <begin position="17"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1949" evidence="3">
        <location>
            <begin position="137"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22956" checksum="4F28121D631116AA" modified="2013-07-24" version="1">MEYVTVEREAADEFIEKKSRFIGSCRPVQTEEEALDFIAKLKSQYWDASHNVYAYILREGNIARFSDDGEPQGTAGIPVIDTLKKAGVVDAVVVATRYFGGILLGGGGLIRAYSHTASIALAAAHKITMRECLLLSLSCDYSLYGKVAALVPENGGVVDGTEFLERVNLRFHLDPEQLPALEKRLADATSGRCALVEEGKRFFPFAGTFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6XX34</accession>
    <name>R6XX34_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Spore coat protein CotH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00813</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28313">
        <property type="protein sequence ID" value="CDD28313"/>
        <property type="gene ID" value="BN815_00813"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014867">
        <property type="entry name" value="Spore_coat_CotH_CotH2/3/7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40050">
        <property type="entry name" value="PTHR40050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08757">
        <property type="entry name" value="CotH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0167">Capsid protein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0946">Virion</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424778" evidence="1">
        <location>
            <begin position="28"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="52079" checksum="02D36C35F22BEB5D" modified="2013-07-24" version="1">MGKIALGAAVLAAALVLLLGLAGKAGAILPAGENPGYVSRLFDGSRVHRVDIQVEDWVAFLASAPEEEYIPATVEIDGEAFRQVGLRAKGNNSLRLTAEYGLSRYSLKLEFDHYTDGSYHGLDKLSLDASFQDNSYLKTWLAFDIMEFLGVPTPLRSFVWVTVNGQPWGLFLAVEEPEEAFARRNFGANHGQLYKPDYRSLAEENADVHLRYTTDEPEDYPGIFENAKLDPSPADRQRLVDSLKILNSGEDLETAVDVEQVLRYFVGQVFVMNWDSYLGHTGHNYLLYEEEGKLSMLPWDYNLAFGTYALGMTDPITDPNVLLNYPILTPAPGEHMTKRPLYHQLMQVDAYYLRYQELFGWFLAEYVENGELSAALWQAAELIAPYVEADPTAFCSYEDHRLAVETLEQVCLLRAESARGQLEGRYPATLAQQTQRPGEGVDASHVDLRHLGDFEDLKQAGTGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXG5</accession>
    <name>R6XXG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00848</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000089">
        <property type="protein sequence ID" value="CDD28433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28433">
        <property type="protein sequence ID" value="CDD28433"/>
        <property type="gene ID" value="BN815_00848"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="121" mass="13666" checksum="27B0FF5DB9AED76A" modified="2013-07-24" version="1">MELAQWVEANTDPGSVILTDTRHNNEIASLAGRNVVCGSPSYLYYHGLSYDRAQRDVGQMYAAPQESQVLLAQYQVRYILVSDFERGSYPVNQAALDALYPRVYDDGSRVLYQVTEQEDIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY55</accession>
    <name>R6XY55_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00919</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CdaR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000100">
        <property type="protein sequence ID" value="CDD28688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28688">
        <property type="protein sequence ID" value="CDD28688"/>
        <property type="gene ID" value="BN815_00919"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041522">
        <property type="entry name" value="CdaR_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025736">
        <property type="entry name" value="PucR_C-HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042070">
        <property type="entry name" value="PucR_C-HTH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17853">
        <property type="entry name" value="GGDEF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13556">
        <property type="entry name" value="HTH_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF_2" evidence="3">
        <location>
            <begin position="126"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_30" evidence="2">
        <location>
            <begin position="295"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="361" mass="41176" checksum="3CEFDD72B4548AF0" modified="2013-07-24" version="1">MSNRLFQGIIHQMRDTIDRTIGVVDESSVIIACSELGKIGEVCEEITPEEMASVDVFQTDEYSFKSFGSRPRPEYAVFVAGKDPEAQKYVKILAVSLNSIKQYYDEKYDRGNFIKNVILDNILPGDIYLKSHELHFDSDVSRVCMLVKIAEKNDISAYDVLQNLFPDKNKDFIININETDIALVKEIKPNIDEKDIDKLASSIVDTLSGEFYTHCTVGIGTVVNSTKDLARSFKEAQVALEVGKVFDTEKPIVSYNHLGIARLIYQLPTTLCEMFLKEVFRKGSIDSLDHETLFTIQRFFENSLNVSETSRKLFVHRNTLVYRLEKIKKITGLDLREFEDAIVFKVALMVKKYLSSNPTKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZD8</accession>
    <name>R6XZD8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00079</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29108">
        <property type="protein sequence ID" value="CDD29108"/>
        <property type="gene ID" value="BN815_00079"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="375"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="404"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="437"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="462"/>
            <end position="482"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="507" mass="53575" checksum="B5A301389E476922" modified="2013-07-24" version="1">MTDSVKIPLFKKADLDASIGVFFDGFSKVIVAVAILLGTFGLDGATVFGTMMPGVLVNVIVLNGGLWLYYRHVAKSRGDRDLTAIPAGLQAGRMFIWLYSIMLPVYNTTGDAQLAFKVGVLAHFIGGAVFIIGAFVVPLVLKIVPAGALFGSLAGGAMAFLILQSMDGTLKMPLVGWLSLIVLFVIYLGKVNTKLPAALIAIVVGAGIAWATGAMSFSTVTDSLQNLGFYIPNVTFGIFSGDVISQTLPFLPIIIVFSLNEVITGIQAVEQAKECGDTFFTTTKPLVLAGVSSMVGALFGNPLAVGLYWGYPGWKKMGSGTGYHLGIVVLYALVGLTGLSAIITAFIPEAVVLPILVFVGISSYSQAFEVVTKKYYPAVIMASLPVVMDFIMDNVAEGKLAGFSAFDNGSAFVGLLVGCVFMFIIDNDWLKASITNVVALALTGIGMIHSPGLLFTESYSPNLGFVAVYCVLIVGFLVLHLIKFNQKAHQADLEAEKAAALAAAKQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y066</accession>
    <name>R6Y066_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-N-arabinofuranosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01143</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29408">
        <property type="protein sequence ID" value="CDD29408"/>
        <property type="gene ID" value="BN815_01143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046373">
        <property type="term" value="P:L-arabinose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010720">
        <property type="entry name" value="Alpha-L-AF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06964">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00813">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-L-AF_C" evidence="4">
        <location>
            <begin position="295"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="491" mass="55218" checksum="19A224048F3B7DAB" modified="2013-07-24" version="1">MSKIIVNKQDKKSTINKNIYGNFSEHLGRCIYNGIYVGEDSSIPNVNGMRTDVVEALRHIKLPVLRWPGGCFADEYHWKDGIGPKESRKRMVNTNWGGVVEDNSFGTHEFMEFCRQVGCEPYINGNVGSGTVQEMSEWVEYMTFDGESPMANLRRENGQDEPWKLKYICVGNESWGCGGNMRPEYYADLYRHYQTFLRNYGDNKLYKIAVGPSNDDYQWTDTLMKMAGKYMDALTLHYYTVPGNDWQHKGSATEFTQEDYYITLRKANFMDEIITKHAQIMDRYDPENKVSLLVDEWGTWFDVEPGTNPGFLYQQNTMRDAMVAALSLNIFNRHSDRVAMANIAQLCNVLQAVVLTEGDKMVLTPTYHVFDLYKDHQDATLLGAFVEEGQAGEGENTIPMLSVSASEDKDGVVHVTAANLSATQSCPVELDLLGGQMGTVTGKILTGSMDAYNDFDTPNTVSIQPMEGITVENGQARFTLPACSVVEITLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y183</accession>
    <name>R6Y183_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC-type dipeptide transport system periplasmic component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01272</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein 5 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29823">
        <property type="protein sequence ID" value="CDD29823"/>
        <property type="gene ID" value="BN815_01272"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023765">
        <property type="entry name" value="SBP_5_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01040">
        <property type="entry name" value="SBP_BACTERIAL_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437254" evidence="3">
        <location>
            <begin position="29"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="4">
        <location>
            <begin position="91"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="542" mass="58469" checksum="C0D3DE8377C7DD89" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1B5</accession>
    <name>R6Y1B5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00669</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27605">
        <property type="protein sequence ID" value="CDD27605"/>
        <property type="gene ID" value="BN815_00669"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018656">
        <property type="entry name" value="DUF2087"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09860">
        <property type="entry name" value="DUF2087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="21840" checksum="6C4B1267A1904B37" modified="2013-07-24" version="1">MTEEQALKLFKGLADRSRLQILKSLLEEDMYVERLAQRLELTPATVSFHLKKLMDAGAVSSRREQYYTMYSINKEVFQCRILDILGEKSSDAQRQQEREARYRQRVLDSFFEYGRLKAIPAQRKKERICLEEIAKELELGRPYPERELNQVLLRFHQDYCTLRRDMISEGILRREEGLYTRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2H6</accession>
    <name>R6Y2H6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HATPase_c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01506</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30263">
        <property type="protein sequence ID" value="CDD30263"/>
        <property type="gene ID" value="BN815_01506"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010559">
        <property type="entry name" value="Sig_transdc_His_kin_internal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06580">
        <property type="entry name" value="His_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="2">
        <location>
            <begin position="313"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="416" mass="46668" checksum="3E131FEEDDE50052" modified="2013-07-24" version="1">MAIFALPTGYLISNNRYKRKLYLYSLLICVANIGMALGGLPEYLMDAVVEAGERGVLLLGGTLYYGAFTCLLFFFLQYFFEYLQLSGREKQLCSVGAFSMTGLLLLLTLASPWTGAAFTVDEGGLQMGPWFPLLQSVVLLCYLFVTIVILRHRSVLRRREFVFLLLYILIPLAGGLSRIVLPNIVLVNAGFTVATLLILMNVQFEHEVMLKEQEKQLAEGRIDIMLSQIQPHFLYNSLGVIYSLCATDPEAARKAIKRFSDFLRGNMDSLKNREPIPFEAELNHVMNYLYLEQQRFGDKLQVIYQIKTEDFLIPPLTLQPLVENAVQHGVLHRKNGGTVVIRTEETDAGALVTIEDNGVGMEKAKEHATLGEHSHIGISNVRSRLEEMVGGRLTLESNSLGTTATILIPWKEERSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2I5</accession>
    <name>R6Y2I5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000213">
        <property type="protein sequence ID" value="CDD30273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30273">
        <property type="protein sequence ID" value="CDD30273"/>
        <property type="gene ID" value="BN815_01507"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004424977" evidence="1">
        <location>
            <begin position="28"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="16165" checksum="33AEB97040310E4B" modified="2013-07-24" version="1">MKKNLSRAAAAVALSAALLSLAGCQTAAKNAVQELEAQDAVTIQLVCQSEDVYQIFYSTYLEGEAYGQGGWADLDGKALTPETSLTASFDKEYFEGKDISTLSMDFSPYGEGDTVELATTEQVAIPAEYGETYTILFTGDEESGFTAQLQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2M2</accession>
    <name>R6Y2M2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30303">
        <property type="protein sequence ID" value="CDD30303"/>
        <property type="gene ID" value="BN815_01537"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7814" checksum="B007BB47F3077DAA" modified="2013-07-24" version="1">MDYKRMASEYLEEVARIDRRLEQLRRENRAHREADLWVRMGALMEIRDDLQATAHVLQRRAASCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2U3</accession>
    <name>R6Y2U3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SHSP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00058</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000079">
        <property type="protein sequence ID" value="CDD28140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28140">
        <property type="protein sequence ID" value="CDD28140"/>
        <property type="gene ID" value="BN815_00058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SHSP" evidence="4">
        <location>
            <begin position="29"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="16806" checksum="2CFA6363DFA1D0D1" modified="2013-07-24" version="1">MSMFDMMPFEHRNHLSYNPFRDLENWERSFFGDWSTGFNTDIKDKGDHYELEADLPGVKKEDIAVDIDGDRMTISTHRSAETEEKDDNSQYLRRERSYGSFSRSFDISNIKSEEISGAYHDGVLTLTLPKKSPTAPSTSRRLDIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2X4</accession>
    <name>R6Y2X4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L32</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmF</name>
        <name evidence="5" type="ORF">BN815_01599</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL32 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30378">
        <property type="protein sequence ID" value="CDD30378"/>
        <property type="gene ID" value="BN815_01599"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00340">
        <property type="entry name" value="Ribosomal_L32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002677">
        <property type="entry name" value="Ribosomal_L32p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044957">
        <property type="entry name" value="Ribosomal_L32p_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35534">
        <property type="entry name" value="PTHR35534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01783">
        <property type="entry name" value="Ribosomal_L32p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01031">
        <property type="entry name" value="rpmF_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="6808" checksum="B317D9CBD7A79ECD" modified="2013-07-24" version="1">MAVPKRKVSSARQNKRRSNVWKLQAPALMRCPQCGEYKTPHRVCGNCGYYNGRAVVKKDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2X8</accession>
    <name>R6Y2X8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00773</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28180">
        <property type="protein sequence ID" value="CDD28180"/>
        <property type="gene ID" value="BN815_00773"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041273">
        <property type="entry name" value="DUF5596"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041644">
        <property type="entry name" value="GNAT_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18164">
        <property type="entry name" value="GNAT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18082">
        <property type="entry name" value="NAT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAT_N" evidence="1">
        <location>
            <begin position="5"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="GNAT_C" evidence="2">
        <location>
            <begin position="137"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="302" mass="34245" checksum="6CAE0D60E62A077A" modified="2013-07-24" version="1">MDRAFTQELMEKTGFPAEARQAFTQAEEQLLSAGQEEALDGAVEFYYENDLSTKLVEPLLEEIAQASGVHLYTVWELFLIQAAKPARKGYLEKGVPEDIVWDTWEDLKYKAIECKNVQGVWGNFVAHWYPIFFSNDIVKLGRLEYENVTYEGEVPYEKNGCVVRPGDKVKSVHIPSSGEPFDQAARLASYKKAYQFFKEELQGGPLVCVCGSWLLYPPYRGILSPTSNVVSFAGDWDILSSQESEEFHDAWRVFGAASKLPPEQWPEDTSMRRAYKKWILEGHKAGSGFGVLLFDGEKILNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y382</accession>
    <name>R6Y382_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30458">
        <property type="protein sequence ID" value="CDD30458"/>
        <property type="gene ID" value="BN815_01675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="15685" checksum="D062313C127FECE2" modified="2013-07-24" version="1">MECAVRPAVLGDCPAITRLNREELGYDYPQEKTFAKLQACLANPAHAVFVAERGGEVVGYLHLEEYDVLYAGHMVNVLGIAVSSACRRQGVGRALLAAGEAWARSQGAEAVRLVSGESRKGAHAFYASLGYTGNKLQRNFKKDLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3A3</accession>
    <name>R6Y3A3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferrous iron transport protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000256">
        <property type="protein sequence ID" value="CDD30473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30473">
        <property type="protein sequence ID" value="CDD30473"/>
        <property type="gene ID" value="BN815_01690"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="7571" checksum="11E48E75B3B7E429" modified="2013-07-24" version="1">MMPLAMAKPGETYTICKVTGKDEVRQHLAELGFVVDGAVTVVSELGGNLILQVKDSRVALDRNMATRILV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3V3</accession>
    <name>R6Y3V3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phospho-N-acetylmuramoyl-pentapeptide-transferase</fullName>
            <ecNumber evidence="8">2.7.8.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">UDP-MurNAc-pentapeptide phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mraY</name>
        <name evidence="9" type="ORF">BN815_01865</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP</text>
            <dbReference type="Rhea" id="RHEA:28386"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="EC" id="2.7.8.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the glycosyltransferase 4 family. MraY subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.13" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000295">
        <property type="protein sequence ID" value="CDD30658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30658">
        <property type="protein sequence ID" value="CDD30658"/>
        <property type="gene ID" value="BN815_01865"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008963">
        <property type="term" value="F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051992">
        <property type="term" value="F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06852">
        <property type="entry name" value="GT_MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00038">
        <property type="entry name" value="MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003524">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018480">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PTHR22926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10555">
        <property type="entry name" value="MraY_sig1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00445">
        <property type="entry name" value="mraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01347">
        <property type="entry name" value="MRAY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01348">
        <property type="entry name" value="MRAY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="56"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="125"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="241"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="266"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="310"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="333" mass="35569" checksum="4D99C21273A21DED" modified="2013-07-24" version="1">MSTMLYLLVSVIAFAITAALGKWMIPFLHKLKFGQTIREVGPSWHKNKQGTPTMGGLMFILGIAIAMIVCLPIAYSLGLEETVLLKAKTFAGLGMAVAFGAIGFMDDYISILKKRNLGLTERQKLVLQFAVVAAYLASVAFAGGATHTTIPFVGQVDLGWLYYPLAAVVIVGVVNAVNFTDGIDGLNTTVSFFAFLSLALCAGLLSMTGLSAMGLASAAACIGFLIWNWHPAKVFMGDTGSLFMGGMVCALAFGMDLPLLLLPVGFVYLCEILSVVLQVTYFKATHGKRLFKMSPIHHHFEMCGWSEVKICLVFGLVALLGGAVAILCVAFGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4B4</accession>
    <name>R6Y4B4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00068</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28700">
        <property type="protein sequence ID" value="CDD28700"/>
        <property type="gene ID" value="BN815_00068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="125"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="125"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="3">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="221" mass="24593" checksum="75104228FC0EB298" modified="2013-07-24" version="1">MAVLLIVEDDTATNEAICEYMSSAGHKVLSAFDGEQGLQIAREKSIDLVVLDIMLPKRTGLEVLKELRQTSGIPVLMLTALDDEPTQAASFDEQADDYITKPFSMLLLGKRVTALLRRCGKSPELSQIQIGDITVDFGGYTASGPDGPIDLTPKEIDLLKLLIEHKGLVLTRSQILDELWGYDYPIIDRTIDTYIKNLRKKLSLDRIVTVKGVGYKYEEHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4N0</accession>
    <name>R6Y4N0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted glutamine amidotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00969</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28825">
        <property type="protein sequence ID" value="CDD28825"/>
        <property type="gene ID" value="BN815_00969"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase_3" evidence="1">
        <location>
            <begin position="3"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="232" mass="26671" checksum="F0EE075A59571605" modified="2013-07-24" version="1">MKIEILFPEFCNLYGDLANMDYLRRCLPQAEFVETSLQEEPLLAREKVDMVYLGPMTERLQEAVLEKLRPLRARIWELIDQDTLFLCTGNALELFGQYIVKEDGSRLECLSLFPLYAQRDMMHRHNSVFLGSFEGKAVMGFKSQFTFATPLSQQIALFPVEKGVGLNKKCPFEGVRYRNFFGTYLLGPLLINNPHFTRFLLDRLGARSAPLALEEQVQAAYEKRLADCRAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4P4</accession>
    <name>R6Y4P4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00982</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28840">
        <property type="protein sequence ID" value="CDD28840"/>
        <property type="gene ID" value="BN815_00982"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="41" mass="4621" checksum="82889E9E569243A1" modified="2013-07-24" version="1">MPSTGMVNRKIKAIFPPMIKPMAKEKISIRGLRTAVRIIII</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Z3</accession>
    <name>R6Y4Z3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamyl-Q tRNA(Asp) synthetase</fullName>
            <shortName evidence="5">Glu-Q-RSs</shortName>
            <ecNumber evidence="5">6.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gluQ</name>
        <name evidence="8" type="ORF">BN815_02147</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30988">
        <property type="protein sequence ID" value="CDD30988"/>
        <property type="gene ID" value="BN815_02147"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01428">
        <property type="entry name" value="Glu_Q_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022380">
        <property type="entry name" value="Glu-Q_tRNA(Asp)_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03838">
        <property type="entry name" value="queuosine_YadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="7">
        <location>
            <begin position="4"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glutamate binding" evidence="5">
        <location>
            <begin position="7"/>
            <end position="11"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="5">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="5">
        <location>
            <begin position="249"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="317" mass="34894" checksum="B0FBF83C94A3598B" modified="2013-07-24" version="1">MARVVGRFAPTPSGYLHLGNLFCSLIAWLAAKSQGGDIILRNEDLDRERTRQEYVLQARRDLDALGLFWDQGGEVGGPHAPYDQSQRFAFYRAQLAQLEARGLCYPCFCSRAQLHAASAPHASDGELLYSGACRDLTPAQVAEKSRTRSPALRLRVPEETIAFTDLHYGPQQQYLPTGCGDFILRRSDGVYAYQLAVVADDGAMGVNQVVRGRDLLSSTPRQILLYRLLGYPVPEFGHTPLLLASDGRRLSKRDGDQSLSGILSRGYSPRDVVGGLAYLGGLLPEPAPAWPEELLPLFSWEKLPREDIPLPAGLFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y580</accession>
    <name>R6Y580_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Bac_transf domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01024</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29005">
        <property type="protein sequence ID" value="CDD29005"/>
        <property type="gene ID" value="BN815_01024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="117"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="263"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="4">
        <location>
            <begin position="258"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="446"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="449"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="479" mass="55205" checksum="214D91946443225B" modified="2013-07-24" version="1">MHTIKKLKRTIVFILKLALFASLFGIFFGIFGINNPWLFNLSRTTGVTMVTFVVLGIALMQVYGGYAIGTQKSRPIVHSMALATIITDLVTHLQLSIMNTSEKNNAHFVYETPERLLLVILLQLVVIVFFAYFGNYIYFSLEPPEKCCVISSSRQSLGNIIPKIDRFRKQYEVDEIIRYDDPKVLDVIARNDTVFLYDVPIKERIHLIEYCYQKQKNIYYNFEMIDVVSQGAKYVTLDDKSMVMYTAKDLTMEQRIAKRVMDLALSLVGLIVASPIMLVCAIAIKAEDGGHVFYKQKRLTKYGRVFEVYKFRTMKEENSIHKSVTENDDRITKVGKYLRKFRVDELPQLLNILKGDMTIVGPRPEMLENVEKYTEELPEFSYRLRMKAGLTGLAQISGKYNTSPKDKLVMDLMYIENYSIWMDIKLIFQTITVFLKASESTEAFGSQELYDFDEDRERKRKAAQEGKDAPKEGENGKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5I4</accession>
    <name>R6Y5I4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Nicotinate phosphoribosyltransferase</fullName>
            <ecNumber evidence="4 8">6.3.4.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_02347</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O + nicotinate = ADP + diphosphate + nicotinate beta-D-ribonucleotide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36163"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8">Transiently phosphorylated on a His residue during the reaction cycle. Phosphorylation strongly increases the affinity for substrates and increases the rate of nicotinate D-ribonucleotide production. Dephosphorylation regenerates the low-affinity form of the enzyme, leading to product release.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the NAPRTase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.21" evidence="4 8"/>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31203">
        <property type="protein sequence ID" value="CDD31203"/>
        <property type="gene ID" value="BN815_02347"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004516">
        <property type="term" value="F:nicotinate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041525">
        <property type="entry name" value="N/Namide_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041619">
        <property type="entry name" value="NAPRTase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040727">
        <property type="entry name" value="NAPRTase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007229">
        <property type="entry name" value="Nic_PRibTrfase-Fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006405">
        <property type="entry name" value="Nic_PRibTrfase_pncB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11098">
        <property type="entry name" value="PTHR11098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04095">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17956">
        <property type="entry name" value="NAPRTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17767">
        <property type="entry name" value="NAPRTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000484">
        <property type="entry name" value="NAPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01513">
        <property type="entry name" value="NAPRTase_put"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7 8" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NAPRTase_N" evidence="10">
        <location>
            <begin position="13"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase" evidence="9">
        <location>
            <begin position="158"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase_C" evidence="11">
        <location>
            <begin position="367"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF04095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF17767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="485" mass="54749" checksum="93A8D0F0FD76A4D6" modified="2013-07-24" version="1">MMNKSFQEPNLTMLTDFYELTMANGYFANGFQDTICYFDMFFRKVPDNGGFAIMAGVEQLVEYLQNLTFTEEDIQYLHSKHIFSEKFLEYLRDFTFSCDVWAIPEGTPIFPGEPIVTVRGPAIQAQFVETMVLLCVNHQSLIATKANRISRAAQGRAVMEFGSRRAQGFDGAMYGARAAYIGGCVGTACTISDQMFGVPALGTMAHSWVQLFPTEYEAFKAYAQEYPANCVLLVDTYNVLKSGVPNAIKVFNEVLVPRGFRPAGIRIDSGDITYLSRKARKMLDDAGFEDCPICASNSLDEYIIRDMLMQGAKVDSFGVGERLITSSSEPVFGGVYKLAAVEDKEGHITPKIKISENVAKITTPCFKKVWRLFDRETDKAIADVITLHDEVIDDEKPYTIFDPDHTWKRKTVENFTAVPLLQPIFQGGECVYTPRALKAIRAYCSAQVETLWEEVTRFENPHNYYVDLSQKLWDEKNRLLSERAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5M7</accession>
    <name>R6Y5M7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02392</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000387">
        <property type="protein sequence ID" value="CDD31248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31248">
        <property type="protein sequence ID" value="CDD31248"/>
        <property type="gene ID" value="BN815_02392"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28764" checksum="8853992BC22C101A" modified="2013-07-24" version="1">MRVVAGESSLQPREDDVGEYTSVDVSLKVFLTAFLYQPCEVQLVSDAFSTQAPMDLRFAQSSLLAVQEGYSEVLKKKCTLTATEEEIQKVVDLWCEQEGVQSTCGEGKLSYRVRYTLCLLYRGTSGRLLYLEKSFEGTFATELEGAFAQRSDSVSLTGLWEYRIADKNTVEASVETWVSSLLYSRESVSYLSAAGMGENAQPYPHQPQLLVYYASPGERLWDIAKSHRALLSDLQEQNDLYEDTLPDARPLIICNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5U1</accession>
    <name>R6Y5U1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00009</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000396">
        <property type="protein sequence ID" value="CDD31313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31313">
        <property type="protein sequence ID" value="CDD31313"/>
        <property type="gene ID" value="BN815_00009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="197"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="317" mass="35697" checksum="AEF0913954DC0900" modified="2013-07-24" version="1">MTEKKNYRAKAATGERDKLYPVFPGIWLAFQEVETYSFSSWGKVPSGLLEITHCREGRLEYQDSHRAFVLGEGDLSIRQTRKGEAALLCPVKRYRGLSVLIHPEQAPPCTSCFLRDVNVSLAELYEKFCGEGRPFIMRATPQLEHIFAQLYQVPQSIQRGYFKVKVLELLLFLSCLEPTMSQGEQRACTPFQVRLARDVIAYVDAHRDQRVTAAQLGRELGVSTEQLRASVQQVYGKPLYQCIRAYKMRMAARLLGETDRTVLDIAGEFGYGNSSKFAAAFREVLGASPGEYCQKNSPSLWSEDSADWSGNTPADLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Y0</accession>
    <name>R6Y5Y0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000409">
        <property type="protein sequence ID" value="CDD31353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31353">
        <property type="protein sequence ID" value="CDD31353"/>
        <property type="gene ID" value="BN815_00285"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025591">
        <property type="entry name" value="RloB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13707">
        <property type="entry name" value="RloB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="16767" checksum="C073AADFBE34598C" modified="2013-07-24" version="1">MAKESGRHFRDKSRGKPQRKRKPVVLLIAEGQNKTEKLYFWHFSTPESKYAVKVVSRGETGPQGMLETLKGECLKDDVSAGDDIAGIILDLDCNESRTKQVYDLLQVEENCQYKVFASNPCFEVWFMAHFHAFVAHTRGLARCWRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6G7</accession>
    <name>R6Y6G7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">infA</name>
        <name evidence="5" type="ORF">BN815_00389</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the IF-1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31513">
        <property type="protein sequence ID" value="CDD31513"/>
        <property type="gene ID" value="BN815_00389"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2 3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="4">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8123" checksum="23581011AA138FFB" modified="2013-07-24" version="1">MSKQDVIEVQGVVKEALPNATFQVELPNGHTVLAHISGKLRMNFIRILPGDKVTMEMSPYDLTKGRITWRSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6X7</accession>
    <name>R6Y6X7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">K(+)-insensitive pyrophosphate-energized proton pump</fullName>
            <ecNumber evidence="9">7.1.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Membrane-bound proton-translocating pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Pyrophosphate-energized inorganic pyrophosphatase</fullName>
            <shortName evidence="9">H(+)-PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hppA</name>
        <name evidence="10" type="ORF">BN815_00490</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>diphosphate + H(+)(in) + H2O = 2 H(+)(out) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:13973"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="7.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-insensitive subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.1.3.1" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27034">
        <property type="protein sequence ID" value="CDD27034"/>
        <property type="gene ID" value="BN815_00490"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009678">
        <property type="term" value="F:pyrophosphate hydrolysis-driven proton transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01129">
        <property type="entry name" value="PPase_energized_pump"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004131">
        <property type="entry name" value="PPase-energised_H-pump"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31998">
        <property type="entry name" value="PTHR31998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03030">
        <property type="entry name" value="H_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001265">
        <property type="entry name" value="H+-PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="7 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="136"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="167"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="266"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="298"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="324"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="365"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="404"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="512"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="581"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="604"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="674"/>
            <end position="694"/>
        </location>
    </feature>
    <feature type="site" description="Determinant of potassium independence" evidence="9">
        <location>
            <position position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD27034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="695" mass="71289" checksum="59E24B35ECFB8565" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y707</accession>
    <name>R6Y707_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00102</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29660">
        <property type="protein sequence ID" value="CDD29660"/>
        <property type="gene ID" value="BN815_00102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437149" evidence="1">
        <location>
            <begin position="21"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="9749" checksum="2B3EFE345C90F1A4" modified="2013-07-24" version="1">MRSPVVSLMYRSMPAARRRSHSGAVRRHCHTMALHTGMPVTASQATVVSRWLVMEMAAMSRARMPACSTAWRMAYSVVCRICTASCST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7S8</accession>
    <name>R6Y7S8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Esterase/lipase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000035">
        <property type="protein sequence ID" value="CDD27354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27354">
        <property type="protein sequence ID" value="CDD27354"/>
        <property type="gene ID" value="BN815_00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="1">
        <location>
            <begin position="94"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="33614" checksum="535CE951AA4CD2CC" modified="2013-07-24" version="1">MTEYRKAVPGDATILPGMRTLFAGRSQRGEVVYIRDVEYVRREEGPLHLQLLLPDGLRPGARSTLRYPLVVYVQGSAWGEQDVYGSLPKLVPLAQAGFVVASVKHRASTVAKFPAFLQDVKSAIRFLRAHADTYCIDPNQVGIWGDSSGGHAAQMVGVTGDMGEFKTSDNGEISDAVQAVVDFYGPSDVTHINDAPRDPQFTADKEHIPEDILFGGCVIDHPEIAQPGNPLNYMEKSKPLPPFLIVHGDEDPMVPFHQSVLTARKLQETGHTVEFVKVVGAGHGTFLWTPEVTDLVIRFFQAWLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8R6</accession>
    <name>R6Y8R6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative stage III sporulation protein AE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27679">
        <property type="protein sequence ID" value="CDD27679"/>
        <property type="gene ID" value="BN815_00698"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="9569" checksum="0936E895E4B7B715" modified="2013-07-24" version="1">MAAIQNSVEIVKSGVGAFGILAALCIFVPTMLQGALWMGVCLLGQVAAGLFDTPRLGSLFGACAWVAKMVLAVLVSVCAVAVVCAALVLCVKGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8S0</accession>
    <name>R6Y8S0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01559</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000220">
        <property type="protein sequence ID" value="CDD30325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30325">
        <property type="protein sequence ID" value="CDD30325"/>
        <property type="gene ID" value="BN815_01559"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="459" mass="50663" checksum="337C351191F2B9BE" modified="2013-07-24" version="1">MKKNRKLWIVSAALVAVVLVAVLCLLLPRLQVEPGVPKSGAIVRQEAAEDGRQLFVLERDMEHMSLQDIMDESDLVVMGFLLEQSPGFQVKSTDGEVSTFTNYFFQVTDTYRGEAPGDVLTFRAEGGTVGQVKTVVADDYDFAEQQAYLLFLQRPRAGDTFATQGDYYTLTGGWQGVYPAGDTPVLRSVPMPLRNGHDEAVLSTDELLAELEGMEAPQPAPGPEKYAKLLGEEPVFSGEPPLLDDPEQLNSQIHFRSYMGVDLAHLEKYSNLIVVADYLGRAGPQEGSAYTYRTFQVLDVLRGEAPEEGTVTLRDEGGYTSQEVTCVEPAHAFVKNDTYLLFLNQTAFQQTEDSRPGEYYLTSDIQGIYPLGDVLYTPELNIEVANVPMGLGPTFTLGALRQGLERINQEYPADVDYYAEEAVADLQADLDSGAITQEEYETQLEQWSLEPDATGSGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y918</accession>
    <name>R6Y918_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00717</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000062">
        <property type="protein sequence ID" value="CDD27789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27789">
        <property type="protein sequence ID" value="CDD27789"/>
        <property type="gene ID" value="BN815_00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="292" mass="31129" checksum="1D01900C776616EB" modified="2013-07-24" version="1">MNQTFDRYLSLVEEALRQALPQPEESSPTAPVEEAMAYSLFVGGKRIRPALALGFCQLCGGAPEQALPFACAVEMVHTYSLIHDDLPCMDDDDMRRGKPTNHKVYGEAMALLAGDGLLTKAFETALSFAGPAEDAVRGARILAQCAGAAGMVGGQCIDLDSEGKDVDLSLLREMDQGKTVALISAACQMGCVAAGAGEAQLESARRYAEGVGMAFQIRDDILDVLGDAATLGKNVGMDSARDKRNYVSLLGVEEAQRLVEQFTAQAEQALESFPGDTAFLKELARSLATREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y950</accession>
    <name>R6Y950_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Pyridine nucleotide-disulfide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01661</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000245">
        <property type="protein sequence ID" value="CDD30440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30440">
        <property type="protein sequence ID" value="CDD30440"/>
        <property type="gene ID" value="BN815_01661"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006067">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01077">
        <property type="entry name" value="NIR_SIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="5">
        <location>
            <begin position="463"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="708"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="739"/>
            <end position="769"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="858" mass="92064" checksum="D2C2EB7C50FB900C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9A6</accession>
    <name>R6Y9A6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01711</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000263">
        <property type="protein sequence ID" value="CDD30495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30495">
        <property type="protein sequence ID" value="CDD30495"/>
        <property type="gene ID" value="BN815_01711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8397" checksum="3F3674D761C3D0E1" modified="2013-07-24" version="1">MEKLRILFTGDSITDVNRTDMVRMTEEWMSRDPNATPQQREEAVDRALGCGYPLLGGSQLGVPAAGGLPAGRPGARPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9F6</accession>
    <name>R6Y9F6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30515">
        <property type="protein sequence ID" value="CDD30515"/>
        <property type="gene ID" value="BN815_01728"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="214" mass="24510" checksum="FE6F1ABB6A78BA95" modified="2013-07-24" version="1">MAAIYFPSCNFTKASPRAAKRLRDYMKERMPVAGCCRVDKTPYPAGDTALYFCQACRETLEAKEGNQLLLENLFVWLDRQEDFPWPDYSGLVVNVQDCWRDRKHPEIFQAVRSCLGKMRVQVREMEENRERSVFCGNLHFEPHLPENIALVNARPGVPLYDFPEEEQARLFAEQAAKYTAPLAVTYCNRCTAGISLGSGKAVHLMELAMETYLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9K7</accession>
    <name>R6Y9K7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="5">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">surE</name>
        <name evidence="7" type="ORF">BN815_01786</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="5">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30575">
        <property type="protein sequence ID" value="CDD30575"/>
        <property type="gene ID" value="BN815_01786"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106411">
        <property type="term" value="F:XMP 5'-nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="PTHR30457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SSF64167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SurE" evidence="6">
        <location>
            <begin position="3"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="26132" checksum="C0BC301299336D77" modified="2013-07-24" version="1">MDILLVNDDGIHAPGLRLLAEALRGAGHSLTVVAPDRERSAVGHGITTRDPLFVQEVPWEGIPAYSCSGTPADCTQLGLKALAPKPVDLVVSGPNNGINTAGDLLYSGTVAAAMEGAKLGVKAIALSAPAEADKPTVVQVFLKLLAQLDLEADVRQVLNINVPARPWEEIQGVRWAPQGDCIWLGAYEERVSPGGRRYFWSTYGGYSQAEGDDDRSLLEKGYVTLTPLTYEMTDPAGFSGKECTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9L5</accession>
    <name>R6Y9L5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Bacitracin export ATP-binding protein BceA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01796</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30585">
        <property type="protein sequence ID" value="CDD30585"/>
        <property type="gene ID" value="BN815_01796"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="4"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28568" checksum="9B7E0C3E8E27CA81" modified="2013-07-24" version="1">MALLNVNGLKKVYTTRLGGAKVTALSGVSFTVEEGEFVAIMGESGSGKTTLLNILAGLDKPTSGQVFLNMRDIVSLNEKEISAFRRDHLGFVFQDFNLLDTFSLQDNIFLPLVLAGKKYDEMKKRIDPIAHRLGIWDLLQKFPYEVSGGQKQRAAIARAIITYPELILADEPTGALDSRSAGQILDIFSDLNRDGQTILMVTHSLQAACRAGRVLFIKDGQVYHQIYRGAMTDDELYQAVSATLTQLATSRERSVAVHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAK1</accession>
    <name>R6YAK1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Reducing end xylose-releasing exo-oligoxylanase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000349">
        <property type="protein sequence ID" value="CDD30945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30945">
        <property type="protein sequence ID" value="CDD30945"/>
        <property type="gene ID" value="BN815_02104"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0858">Xylan degradation</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8680" checksum="87A4190AD30049D6" modified="2013-07-24" version="1">MFLIDGTPVPGWKALHPVGLLATLAEASLASDGPYAQEWVRRFWETPLRQGDRRYYDNCLYFFALLALSGKYRIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAP3</accession>
    <name>R6YAP3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">SPFH/Band 7/PHB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00833</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28349">
        <property type="protein sequence ID" value="CDD28349"/>
        <property type="gene ID" value="BN815_00833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018080">
        <property type="entry name" value="Band_7/stomatin-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_HflKC_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01270">
        <property type="entry name" value="BAND_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="25"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="33803" checksum="5B7E8270909E62BE" modified="2013-07-24" version="1">MGPAMFGTLVFVVILIVFLLAIIVANIKIVPQAHAFVVERLGAFHASWGTGLHVKIPFIDRIAKKVSLKEQVIDFPPQPVITKDNVTMQIDTVVYFQITDPKLYAYGVENPISAIENLTATTLRNIIGEMELDHTLTSRDVINSKIRVVLDEATDAWGIKVNRVELKNIVPPKEIQDSMEKQMKAERERRAKILDAEGEKRSAILIAEGEKESAVLRAEAVKETKIREAQGEAEAVLTVQRAVADAIKLMNEANPSEQVIAIKSLEAFEKAADGKATKIIIPSNIQSLAGLATSLKELVVDTPPADRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAZ6</accession>
    <name>R6YAZ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Antioxidant AhpC/TSA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02209</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31055">
        <property type="protein sequence ID" value="CDD31055"/>
        <property type="gene ID" value="BN815_02209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="2"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="3">
        <location>
            <position position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="16571" checksum="A76946B9811A336C" modified="2013-07-24" version="1">MLTVGEKAPEFTLQDKDGNIVSLSDFAGKKVVVYFYPKDNTPGCTRQACAFAGLYGEFQKKGVEVIGISRDSVASHGKFAQKHSLPFLLLSDPELQAIQAYGVWQEKKLYGKVSMGVVRTTFVIDEQGNIERIMPKVKPDTNAAEILEQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB25</accession>
    <name>R6YB25_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02243</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31090">
        <property type="protein sequence ID" value="CDD31090"/>
        <property type="gene ID" value="BN815_02243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="402" mass="44522" checksum="C0305E51FD564168" modified="2013-07-24" version="1">MLGFRKKEQAAAVSVQTRPEESFRLGRAAPPGPGERALYRALREKVPIIDASINKLRRLLGSFVVECPDEAAQRGLRRFLEDVPVGAAGQGIDSFLGVYFEELLTYGNAVGEMVVSGGQVAALYNASLESVELEQAGPLEVKVSVWDGAQRRPCPYPELLLVSALNPEAGSARGTSLLRGLPFVSEILLKIYHTLGVNWDRLGNVRFAVTCKPDPSGLYAGERARQMAQEWQRAMRSSQVSDFVAVGDVSIQAIGADNQILDSEVPVRQMLEQIVAKLGVPPFLLGLSWSSTERMSSQQADMLTSELDAYRGLLTPVIQKICRTWLTLAGYDPQCRVELDAYRRVLTPVIRKICRTWLTLAGYGPECAVQWEEITMQDEVDHANARYLTARARQLEQKEEEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBB9</accession>
    <name>R6YBB9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31215">
        <property type="protein sequence ID" value="CDD31215"/>
        <property type="gene ID" value="BN815_02359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="331" mass="36734" checksum="74F4E50060273172" modified="2013-07-24" version="1">MLRFGTIGSGWIVDEYIHGAKDSGLWKLTAVYSRTAERAQAFAQKHGAPLWFTDLEEMAASPQIDAVYIASPNALHFEQCRLFLERGKHVLCEKPLCAQGDKVAQLQQLAQERGLVFLEAIMYLHLPQRKILEDTLGQLGKLSLVKLDFCQRSSKLDSYLNGELPNIFNPALETGALMDLGVYCVYPALALFGEPESFTVTPQMLNSGADGGGVLTLRYPDKLVVMTYSKLGQAGANSDFQGTEGTLAVESISRVAGLSLWRKDGTVERLYGDDEKYKLMGWEAKDFYRYITEPEASAQEYARCSQLSLQVSCFMERVRKQAGLVFASDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBP8</accession>
    <name>R6YBP8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00287</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000410">
        <property type="protein sequence ID" value="CDD31355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31355">
        <property type="protein sequence ID" value="CDD31355"/>
        <property type="gene ID" value="BN815_00287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023908">
        <property type="entry name" value="xxxLxxG_rpt"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03057">
        <property type="entry name" value="xxxLxxG_by_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437579" evidence="2">
        <location>
            <begin position="27"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="632"/>
            <end position="658"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="636"/>
            <end position="658"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="658" mass="69390" checksum="622D2C6CAAA4A87C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCF6</accession>
    <name>R6YCF6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00404</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000426">
        <property type="protein sequence ID" value="CDD31560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31560">
        <property type="protein sequence ID" value="CDD31560"/>
        <property type="gene ID" value="BN815_00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="22"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27270" checksum="A9AFB0882712AD6B" modified="2013-07-24" version="1">MEYGLQLFSVRDVTEQDMEGALRQVAEMGYRSVEFAGFFGHSAQEIKGWLDKYGLTASGTHTGMSELTGDKLQETIAYNQAIGCRNLIVPYESFATKGEIDAFIQRVQQVEPQLNAAGITLHYHNHDHEFKPNQDGLIPEEELLARTNLLLEVDTYWVYAAGKDPVAFLQEHKDRIRVIHLKDGKGGDACASLGQGIAPVAQVRQAAIQLGLEMVVESEGLEPTGLEEVRRCMDFLRSEDQKDGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCJ6</accession>
    <name>R6YCJ6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="8" type="ORF">BN815_00421</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31605">
        <property type="protein sequence ID" value="CDD31605"/>
        <property type="gene ID" value="BN815_00421"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 8" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="7">
        <location>
            <begin position="198"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="428"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="206"/>
            <end position="213"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="427"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="431"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="504"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="605" mass="66501" checksum="74BEEA0E4D8DAA69" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCQ4</accession>
    <name>R6YCQ4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ABC transporter related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00442</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31685">
        <property type="protein sequence ID" value="CDD31685"/>
        <property type="gene ID" value="BN815_00442"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="5"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="291" mass="31904" checksum="98229B6E859C9604" modified="2013-07-24" version="1">MEPNIVFSHVTKTYKGGVTALEDVSFSVGSGVFGLLGHNGAGKSTLMKALVTVEPPTSGAIQVCGFDTARQGREVRQRLGYLPQELPMYPSLSVRDFLGYMGELKGVRDKTQVEQVLLQVEMQDFARRKIGQLSGGMKRRVGIAQALLGEPPILVVDEPTAGLDPEERVRFRGVLSRYARQGRTVLLSTHIVEDVHQLCQHLAVLRKGRLFYAGPSQELLHQVEGRVKVLPLGDDKELAALQRQAVVLSTTYEQNAILARVVDESGRFPQPPVPATLEDAYVYCMGGKSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCY8</accession>
    <name>R6YCY8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
            <ecNumber evidence="4">3.4.16.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ORF">BN815_01061</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the peptidase S11 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="19">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29129">
        <property type="protein sequence ID" value="CDD29129"/>
        <property type="gene ID" value="BN815_01061"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015956">
        <property type="entry name" value="Peniciliin-bd_prot_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018044">
        <property type="entry name" value="Peptidase_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012907">
        <property type="entry name" value="Peptidase_S11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037167">
        <property type="entry name" value="Peptidase_S11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07943">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00725">
        <property type="entry name" value="DADACBPTASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00936">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69189">
        <property type="entry name" value="SSF69189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 19" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 17" id="KW-0732">Signal</keyword>
    <keyword evidence="16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="17">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425316" description="Serine-type D-Ala-D-Ala carboxypeptidase" evidence="17">
        <location>
            <begin position="28"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="492"/>
            <end position="514"/>
        </location>
    </feature>
    <feature type="domain" description="PBP5_C" evidence="18">
        <location>
            <begin position="382"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="157"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="157"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="12">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="76"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="328"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="SMART" id="SM00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="CDD29129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="530" mass="57181" checksum="C7DC7763469E8177" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEH4</accession>
    <name>R6YEH4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Site-specific recombinase resolvase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01237</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29709">
        <property type="protein sequence ID" value="CDD29709"/>
        <property type="gene ID" value="BN815_01237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025827">
        <property type="entry name" value="Zn_ribbon_recom_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13408">
        <property type="entry name" value="Zn_ribbon_recom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="2">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="3">
        <location>
            <begin position="129"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="375"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="480" mass="54637" checksum="34F327B2CD92FA53" modified="2013-07-24" version="1">MMIRPEERGEKVVTFIDNGYSGGNMNRDGFQKMMGLVRQGKVSKVIVYKLDRMSRSLSDFMNILQEFKENKVEFVSSQEAFDTSSPYGDLIVKILMVFAEFERTSIINRVSQAYLHRSEMGFYMGGRRPYGFQLVPTVIHNVKTKKLDPIPSEAEQVRYLFEVYAQESVSLRRLVDIMNAEGKQPLDGSHWTTAKLSTLLKNPIYVKADSNVYDYYDRHGTEIVTDVSQFTGEFGAQLYGHTKHQAGNPDWSDMRLVLLSHPGIVDSDIWLKCQRKLEKNRQITNSYSNTTSWLAGKVVCEPCGHTMTTIKGKPGKDGQVRRYFNCTGRSQRVCQGPKVTIYAEDLENMVYQCIADKLVGLKEAKYSSHKGSGELNDLKLKVKAIERTEKQLLDTILAGGFNEDLLTIANQKASQLKRDRLALYERMEELKSQEDQAGAVVNLAKSWKTADYQRKKAVAMIMIHKILINEDGDAKIIWNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFD5</accession>
    <name>R6YFD5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01350</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30024">
        <property type="protein sequence ID" value="CDD30024"/>
        <property type="gene ID" value="BN815_01350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="214"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="438"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="458"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="474" mass="52176" checksum="3A11A2D4F983CFBB" modified="2013-07-24" version="1">MLAAWLAKIWVEVKLLVIVAVVLVAILLDFGTTLGGMITPVVAVVFLYFLCLDIGKNRQFFRHNIVHSLLKALNSYRDLTGFEQRSLRRLLSTLAVIVGVLGVSAATFLSLLRVAQSPIRDFFLLGVVGFAAAGVIGSIFWYTLALKRDLRDWSVLLAQIAEMYGGNLNAVNHIPPTSNLYDCAMQLNMIRTGIQKAVEEGIKADRTKVELITNVSHDIKTPLTSIISYVELLKREPDLPPHVMDYIKTISQKADRLNHIVQDVFEVSKAATGNISLDLEDLDIGKLLQQTFGEMEEDLRQSTLAWRVEIPDTPMLVHADGQRLYRVFQNLIRNCDQYALEGSRVYVNLTAQPNPAGGGLATVMIRNISRNEITMDADHLTARFVRGDQNRTTEGSGLGLSIAKSFTEACGGRFNVHTDGDLFIVTVQFPLVVKAPAAPPAPAATAVPQEETPPAEAHPVEEAPPPPRQEPPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG53</accession>
    <name>R6YG53_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phosphoglucosamine mutase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01568</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30334">
        <property type="protein sequence ID" value="CDD30334"/>
        <property type="gene ID" value="BN815_01568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_II" evidence="2">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="3">
        <location>
            <begin position="85"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="1">
        <location>
            <begin position="202"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="276" mass="29989" checksum="C87858A198D5028E" modified="2013-07-24" version="1">MKVGLDCANGSSWNIAKAVFDALGADTTVINAEPSGLNINLNAGSTHIEGLQKLVVEKGLDVGFAFDGDADRCLCVDEKGNVISGDHILYIYGRYMKERGKLVTNTVVTTIMSNFGLYKALDELGIDYAKTKVGDKYVYEYMQQSGARIGGEQSGHIIFSKYASTGDGILTSLKMMEVMLARKKPLSELAAPLHIYPQVLENVRVTDKATAQADPDVQAKVKEVAEKLGDTGRILVRESGTEPVLRVMVEAPEQETCQKYVDEVVEVIRAKGHIVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGB8</accession>
    <name>R6YGB8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidase M56 BlaR1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00667</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27601">
        <property type="protein sequence ID" value="CDD27601"/>
        <property type="gene ID" value="BN815_00667"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="28009" checksum="48F44CBAA478BF72" modified="2013-07-24" version="1">MEGSHRIANGMEFVNDPAVIGKWKSVGSLEAGEEFSLEKLNASQKGELAEEIYFLPQGVSYWIFEGWTKGTLLLHYGGDAPILERSYQVVSREGRKYLLVTLPEEGHIAVFEQVDNTEYALESLGRRDNIDLPFVPDPDVVGLWKTVGFVERPEDFTGPNSAVKLWLETVEFRPHGVLIQQYWNEEPWHDRWTKGTLLLQKRHTAPSYQLRDVEGKEYLYMEWKMGNYVFGGKEPSYYVLERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGC0</accession>
    <name>R6YGC0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">ATP-dependent 6-phosphofructokinase</fullName>
            <shortName evidence="15">ATP-PFK</shortName>
            <shortName evidence="15">Phosphofructokinase</shortName>
            <ecNumber evidence="15">2.7.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Phosphohexokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">pfkA</name>
        <name evidence="17" type="ORF">BN815_01630</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 15">Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>ATP + beta-D-fructose 6-phosphate = ADP + beta-D-fructose 1,6-bisphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16109"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32966"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="15">Allosterically activated by ADP and other diphosphonucleosides, and allosterically inhibited by phosphoenolpyruvate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 15">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="15">Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Prokaryotic clade 'B1' sub-subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="17">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.11" evidence="15"/>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30409">
        <property type="protein sequence ID" value="CDD30409"/>
        <property type="gene ID" value="BN815_01630"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003872">
        <property type="term" value="F:6-phosphofructokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006002">
        <property type="term" value="P:fructose 6-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.460">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00339">
        <property type="entry name" value="Phosphofructokinase_I_B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022953">
        <property type="entry name" value="ATP_PFK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012003">
        <property type="entry name" value="ATP_PFK_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012828">
        <property type="entry name" value="PFKA_ATP_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015912">
        <property type="entry name" value="Phosphofructokinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000023">
        <property type="entry name" value="Phosphofructokinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035966">
        <property type="entry name" value="PKF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00365">
        <property type="entry name" value="PFK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000532">
        <property type="entry name" value="ATP_PFK_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00476">
        <property type="entry name" value="PHFRCTKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53784">
        <property type="entry name" value="SSF53784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02482">
        <property type="entry name" value="PFKA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00433">
        <property type="entry name" value="PHOSPHOFRUCTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 15" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="12 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="14 15" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="11 15 17" id="KW-0418">Kinase</keyword>
    <keyword evidence="13 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PFK" evidence="16">
        <location>
            <begin position="6"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="ADP binding; allosteric activator; shared with dimeric partner" evidence="15">
        <location>
            <begin position="23"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="15">
        <location>
            <begin position="127"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="15">
        <location>
            <begin position="171"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="region of interest" description="ADP binding; allosteric activator" evidence="15">
        <location>
            <begin position="216"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="15">
        <location>
            <begin position="252"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <begin position="74"/>
            <end position="75"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <begin position="104"/>
            <end position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>ADP</name>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <note>allosteric activator</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF00365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="CDD30409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="322" mass="34670" checksum="6F6F3A813601C9FA" modified="2013-07-24" version="1">MGAKSIAVLTSGGDAPGMNAAVRAVVRTGLNFGMKVYGVMRGYNGLLTGDLKEMNMRSVSDIMQHGGTALYTARSPEFNTPAGVEKAANMCREKGIEGVVVIGGDGSFRGARDLTNAGINCIGVPGTIDNDIACTDYTIGYDTALNTAMEMIDRIRDTTESHDRCSVVEVMGRRCGDIALNTGVAVGALTTLVPEIPYDFHRDVLDRIRLAQSTGKRHYIIVVAEGVGNTEELAQRIQRHTGIETRATILGHVQRGGAPTLRDRVVASRMGYHAAELLFNGIGNRVVAMKGEQIVDFDITEALNMPRTFDEKMYRVSAVLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGN7</accession>
    <name>R6YGN7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">UTP--glucose-1-phosphate uridylyltransferase</fullName>
            <ecNumber evidence="3 4">2.7.7.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">UDP-glucose pyrophosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01727</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>alpha-D-glucose 1-phosphate + H(+) + UTP = diphosphate + UDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:19889"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="EC" id="2.7.7.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the UDPGP type 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.9" evidence="3 4"/>
    <dbReference type="EMBL" id="CBGU010000271">
        <property type="protein sequence ID" value="CDD30514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30514">
        <property type="protein sequence ID" value="CDD30514"/>
        <property type="gene ID" value="BN815_01727"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003983">
        <property type="term" value="F:UTP:glucose-1-phosphate uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006011">
        <property type="term" value="P:UDP-glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02541">
        <property type="entry name" value="UGPase_prokaryotic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005771">
        <property type="entry name" value="GalU_uridylyltTrfase_bac/arc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43197">
        <property type="entry name" value="PTHR43197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01099">
        <property type="entry name" value="galU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="5">
        <location>
            <begin position="6"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361259"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="291" mass="31968" checksum="B3A30C3E86C9EDFB" modified="2013-07-24" version="1">MKKVRKAVIPAAGLGTRVLPATKVMPKEMLPIVDKPAIQYIVEEAAASGIEDILIITNRGKGLLEDHFDRAPELERRLAGDPAKEAILNQVVGISKLANIFYVRQKETKGLGHAIGCAREFVGDEPFAVLYGDDVILGEDPACGQLMRAYEQFGSGVVGVKEVSREAIRKYSSLKVEHIQDNYFRCTDMVEKPQPGQEFSLYSILGRCVLPPEIFDILDNTPPGAGGEIQLTDAMATLARRDGMTAVDFTGTRYDMGNKLGIMQASVEVALRHPEIGEDFRAYLKELCKTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHZ1</accession>
    <name>R6YHZ1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">ATP synthase gamma chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP synthase F1 sector gamma subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">atpG</name>
        <name evidence="10" type="ORF">BN815_02158</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30999">
        <property type="protein sequence ID" value="CDD30999"/>
        <property type="gene ID" value="BN815_02158"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="PTHR11693"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0139">CF(1)</keyword>
    <keyword evidence="4 9" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="5 9" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="33576" checksum="DB9C107FB0315739" modified="2013-07-24" version="1">MAGITEIRGRMRSIQQTLKITNAMYLISSAKVKKARKQLQEVEPYFDRLAKTILDIFRHSPQLQHRYIEGHHKPKEERKTGFVVITGDKGLAGAYNHNVLKLAESYLARKQDSTLFLIGQMGRHYFEKKNIPIDAEFMYTAQDPTLDRAQDICGTLMDLYERGALDEIYLVFTHSYSAMRMEPEIIKLLPLDRAMLSARRGLSEADQYRDVVRYEPSPEAVLDVLVPGVIRGYIFAALVESFCSEQSSRMSAMDSASESARDMLKTLSLEFNRARQGAITQEITEIAGGAEALNQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI28</accession>
    <name>R6YI28_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000082">
        <property type="protein sequence ID" value="CDD28221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28221">
        <property type="protein sequence ID" value="CDD28221"/>
        <property type="gene ID" value="BN815_00787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16647" checksum="0A121E4435F59A36" modified="2013-07-24" version="1">MELTHPQTGERYTLTALKLVPDTVDMNFPDMEDWEVPNHLWKLVYTLEPELEEFVLQDAEEGDPMRPKASREDSATGSTVGCAPLQPVKKKTSPGPASIGIIGGAAELVEIQAGHQVAFSSLRFEPAASVTWLPMFQGRNVEGITVDMLPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIB4</accession>
    <name>R6YIB4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00810</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28296">
        <property type="protein sequence ID" value="CDD28296"/>
        <property type="gene ID" value="BN815_00810"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="415" mass="44825" checksum="AD8AAD200CCE70B5" modified="2013-07-24" version="1">MPAATENGEWSITFRQGYTDGHKVMLSLSLTGPQGDLERYSSVLFAGYGQTSTATINGETAQIQGVNSFEEREGSWDTTMAVVVPESQQEAETLEVAVTLQGLEGQMAELGAHGEVKTISTEPIQGSFSASFTLTVDHSNDYAFVSQAEDNRAKVFAVSGTPTQTVVSVEIPFWGYRNFGALEEDGVKGSARLVLPDGTQLRPDDRRSADLGGYDYRAAKTQSCDLCFDGLPAGTSQVELEFFWQEVGTQQEEVLASFTLDLANQEITAAGTQGVELGSTQYSLLETGDTGWEENGFTVKDVWFSQAESYTGHVYFYLPDDCLETNLQVEVQNAQGETLFRSQAYGEDGAPNPDWTLQPAFAIANLPQPLNICQVTQRLTGAVVPVGEMVTVILSDASTGETLFTDTRALVAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIK3</accession>
    <name>R6YIK3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02378</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000385">
        <property type="protein sequence ID" value="CDD31234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31234">
        <property type="protein sequence ID" value="CDD31234"/>
        <property type="gene ID" value="BN815_02378"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="27833" checksum="5AE921F0B2BFEE5A" modified="2013-07-24" version="1">MQHAGGELAHHDGTLVGLLQGGHGGTAADVPAVDEEVLHGAVGPAGGGRADKALHLYMAQLVVDGDEGGGELPAVDGVNGGGELAVPRGVELLLAVPEEPEGNLRVGQGQLIQNARHGVALGGVLFEELHAGGGVVEQIPHQDGGALGAAGVLQGGLLGAAAGVAHPCHRAGGAGEQLHVGHGGDGGQRLPAEAQGGDGVQVVLPHHLAGGVAQEGGGHVLGGDATAVVRHPHKGDAPPADFHRDDGGAGVHGVLHQLFDNGRWPIHHLARGNELRHLLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIN5</accession>
    <name>R6YIN5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02412</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31269">
        <property type="protein sequence ID" value="CDD31269"/>
        <property type="gene ID" value="BN815_02412"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="5">
        <location>
            <begin position="5"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="238"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="29406" checksum="EFEB4DB35D065D3C" modified="2013-07-24" version="1">MPEKSRLQKILASSGVASRRKAEELIAAGRVTVNGRVARLGDSAVPGKDTIALDGKPLGKSEKKIYLALHKPRGFVTTLHDERGRKCVAQLVEDVGERVYPVGRLDKDSEGLLLLTNDGEFANRVAHPTRHVAKTYRVTVRPSVTEDQLNQMSTGIVIEGRRTAPAKVRVLQQELGRVVLEVVLYEGRNREIRKMCEALGLEVARLKRIAVGPVRLGMLPQGKYRELTKEELRALAAEMKKGAGNDDSSESYGKQGRGAQAAGRRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIS2</accession>
    <name>R6YIS2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000397">
        <property type="protein sequence ID" value="CDD31314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31314">
        <property type="protein sequence ID" value="CDD31314"/>
        <property type="gene ID" value="BN815_00249"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010375">
        <property type="entry name" value="CdAMP_rec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38456">
        <property type="entry name" value="PTHR38456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06153">
        <property type="entry name" value="CdAMP_rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="11764" checksum="895E2A340AFDED3C" modified="2013-07-24" version="1">MVSIMKLILAIVSNDDSGAVSSALTREGFSVTKLATTGGFLMAGNTTFISGVDDEKVDTVIGIIAKYSSRRTQIVPSTSTMEVGMYSSFPVEVTVGGSTIFVLNVDRFEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIU2</accession>
    <name>R6YIU2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00274</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000404">
        <property type="protein sequence ID" value="CDD31339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31339">
        <property type="protein sequence ID" value="CDD31339"/>
        <property type="gene ID" value="BN815_00274"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="16"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="178" mass="20470" checksum="3145FAF2F86F07FA" modified="2013-07-24" version="1">MKAEKKSLPAWQVFKHKELAAKIAALTEDLEELRSEKALLLQQFDYAEDAGAETFRKDIAVLESNLEKLDEQEQKYSVELETALHEYAEAKSKTAGLDPVELYEARQSIRPGQEAAANEKLEQVFGEKYSPLRWMDAKRAQMRLTNDSVEEYAARQLAKQKCKSMLQPARRREQEHAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIW3</accession>
    <name>R6YIW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transporter auxin efflux carrier domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00296</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000414">
        <property type="protein sequence ID" value="CDD31364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31364">
        <property type="protein sequence ID" value="CDD31364"/>
        <property type="gene ID" value="BN815_00296"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="221"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="310" mass="33360" checksum="A4A185C75C2841E5" modified="2013-07-24" version="1">MEAVLTVISKVAVMLILIVVGYLVTKKGMLTERGASEITTLLIQIVTPCLIVNSFLTSEDSLSAGELLLSVGTSALAIALSIGLSLLFFRKEPEGRKKVLRFAVSFSNAGFMGLPLVEGIVGSKGVMYGSFFIVVFNIFCWTYGYSMMSGGQKMSLKVLLFNPGIIGLLFGLPIYFLDLHLPAVITEPVGFFADLNTPLAMLIIGSYVAKVDLHSFVSDFAVYKMAALRLLVAPALFVVCLLFIRPSQELFVTSVIQAACPVAANTVLFSVQYKRDSALASKTVAVSTVLSIISIPLMTILAQGLCNILY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJG6</accession>
    <name>R6YJG6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00069</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000101">
        <property type="protein sequence ID" value="CDD28701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28701">
        <property type="protein sequence ID" value="CDD28701"/>
        <property type="gene ID" value="BN815_00069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="87"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="161"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="124"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="371" mass="41353" checksum="D11F257BCD55A432" modified="2013-07-24" version="1">MRNLTLFTKIFLYTFGVMLFVTVMAHVFLYVLAPQMTVSTNRFVEGAIIESDVNTGILIKSAIGKALPVSLFCCAIISAGCSLLFSRAMTRPIKQIAETTEKMEKLDKAAICVVHTKDEIGELAARVNKLYASLLSTIENLEEEKQNVREAERSKIDFLRAASHELKTPVTALNAILENMILGIGKYKDRDRCLLECKEITGQLSFMIKEILDTSRLDFTQEKQDAETFDLSECLPAICEPYQLIAKAKGLDFSFSIQGKCPVHTSKKGLEKILSNLLSNAVSYTKPGCKITVLLTARQIKIENECTPIPPDKLAHVFEPFYRPDFARDRKDGGNGLGLYIVDTLSKALGLPYQFEATKNPPGMCFILYLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJT1</accession>
    <name>R6YJT1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LrgB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00017</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000440">
        <property type="protein sequence ID" value="CDD31669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31669">
        <property type="protein sequence ID" value="CDD31669"/>
        <property type="gene ID" value="BN815_00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007300">
        <property type="entry name" value="CidB/LrgB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30249">
        <property type="entry name" value="PTHR30249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04172">
        <property type="entry name" value="LrgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="207"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="227" mass="23812" checksum="52906C26BC3CB10B" modified="2013-07-24" version="1">MFTNSLFFGAAISLLAYEVGLLLRKKFKKAIFNPLLIGILCVIGVLSIFHIEYDSYNVGGQYISYLLTPATVCLAVPLYEQLSLLKKNLVAVAAGIVSGVLASMVSVLLLCKLFQLSHEEYVTLLPKSITTAIGMGVSEELGGIVTITVAVIIITGVLGSVIGEIVCKLFRIQEPIAKGLALGTAAHAIGTSKAMEMGPVEGAMSSLAIAVAGLLTVVSASVFAQFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJZ8</accession>
    <name>R6YJZ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sialidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00991</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28866">
        <property type="protein sequence ID" value="CDD28866"/>
        <property type="gene ID" value="BN815_00991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004308">
        <property type="term" value="F:exo-alpha-sialidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011040">
        <property type="entry name" value="Sialidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026856">
        <property type="entry name" value="Sialidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036278">
        <property type="entry name" value="Sialidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023364">
        <property type="entry name" value="Trans_sialidase_dom3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10628">
        <property type="entry name" value="PTHR10628"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13088">
        <property type="entry name" value="BNR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50939">
        <property type="entry name" value="SSF50939"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sialidase" evidence="1">
        <location>
            <begin position="210"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="474" mass="51576" checksum="B75C4DBC1E52F1F9" modified="2013-07-24" version="1">MAHTFTEPFPFSSSSSLGCPYYRIPSLLATREGVLLAAMDARFGGTPDSPNAIGTAVARSLDSGQTWEEPHLAASFQDWAVGKLPPLPGRKPLRHSASTIDPSLLQDSATGRIFLLVDAFPWGMGAFQAQKGSGYCQGRLLLRRRGRWAYGYFVGEDGAIRRLDGSPTPYKVDASLNLSKNSRPLTVGQRRPMYWQGRPWGLPTGKHVPMHLFYQGARFQVFPTSYLFLLYSDDLGKTWSTPREINSLVKEDSLGFFGVCPGQGAQLSQGPHAGRLVFPAYALDARTGRQQFRALYSDDGGSRWQAGTFAPLGEGISSMSETQLLPCPDGALLAFSRTTSGFVARTASLDGGATWQPPVLDSFLPLTGGAGCQVSALGLPWQNRDAVLVSAPAGKDRTQGVLSLGFLEKGHQIRWAARRQLTEAGEEFAYSCLAALPNGKVGLLYETSNRPQAVDAVRFRELSLEGPWDWEHTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK02</accession>
    <name>R6YK02_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Macro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28871">
        <property type="protein sequence ID" value="CDD28871"/>
        <property type="gene ID" value="BN815_00994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002589">
        <property type="entry name" value="Macro_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01661">
        <property type="entry name" value="Macro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00506">
        <property type="entry name" value="A1pp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51154">
        <property type="entry name" value="MACRO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Macro" evidence="1">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="133" mass="14844" checksum="07DDD73CAE4E6A41" modified="2013-07-24" version="1">MQLRLECAQLMARQGHPEPTGQAKVTQAYNLPCQYVLHTVGPIITGRVTPRDEALLAACYRACLEAAQERGIPSVAFCCISTGEFHFPNRRAAEIALETVRDFQKETSSQIEVIFNVYKDADLQIYRELLGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNX5</accession>
    <name>R6YNX5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plasmid recombination enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01555</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the plasmid mobilization pre family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30321">
        <property type="protein sequence ID" value="CDD30321"/>
        <property type="gene ID" value="BN815_01555"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001668">
        <property type="entry name" value="Mob_Pre"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01076">
        <property type="entry name" value="Mob_Pre"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="125"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="204" mass="23862" checksum="60179A5186CCFF13" modified="2013-07-24" version="1">MGRGNIFSAVVHMDEKTPHLHLCFTPITEDGRLSAKEILGNRAQLSQWQDEFHAHMKKAFPVLRRGESALVTKRKHIPTWLFKQSVDLTRQQQAIEKAVSEIGVLNAGKKRDEILEMVGPYFSRLEKHLGQMKKYQATIDYLTQENEGLKEKVNSEKSIQKQMEVLTLKKENERLRRFVDSIPPEVRRVLREQQRQQRPKDHDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPT3</accession>
    <name>R6YPT3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">Anaerobic ribonucleoside-triphosphate reductase-activating protein</fullName>
            <ecNumber evidence="12">1.97.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_01787</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 12">Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-[protein] + reduced [flavodoxin] + S-adenosyl-L-methionine = 5'-deoxyadenosine + glycin-2-yl radical-[protein] + H(+) + L-methionine + semiquinone [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:61976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:14480"/>
            <dbReference type="Rhea" id="RHEA-COMP:15993"/>
            <dbReference type="Rhea" id="RHEA-COMP:15994"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29947"/>
            <dbReference type="ChEBI" id="CHEBI:32722"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:140311"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the organic radical-activating enzymes family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.97.1.-" evidence="12"/>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30576">
        <property type="protein sequence ID" value="CDD30576"/>
        <property type="gene ID" value="BN815_01787"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043365">
        <property type="term" value="F:[formate-C-acetyltransferase]-activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012837">
        <property type="entry name" value="NrdG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034457">
        <property type="entry name" value="Organic_radical-activating"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001989">
        <property type="entry name" value="Radical_activat_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352">
        <property type="entry name" value="PTHR30352"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30352:SF2">
        <property type="entry name" value="PTHR30352:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000368">
        <property type="entry name" value="NrdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00299">
        <property type="entry name" value="anaerobic_ribonucleoside-triph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02491">
        <property type="entry name" value="NrdG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01087">
        <property type="entry name" value="RADICAL_ACTIVATING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="14"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00014281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR000368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD30576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="18323" checksum="57B1E419403F0509" modified="2013-07-24" version="1">MELTIAGVIKESIVDGPGIRYTVFTQGCPHHCPGCHNPQTWAFEGGQKTTPQELFADFQKDPILKGVTFSGGEPFCQAEALAELARLVHGAGKDVACYTGWTYEQLLEKNDPAVNALLAQVDLLIDGPFVLEQRNLELRFRGSENQRLIDMRKTREQGHVVLVEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ05</accession>
    <name>R6YQ05_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00149</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000301">
        <property type="protein sequence ID" value="CDD30676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30676">
        <property type="protein sequence ID" value="CDD30676"/>
        <property type="gene ID" value="BN815_00149"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="94"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="95"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="36497" checksum="DC5432FDE4AC1C5F" modified="2013-07-24" version="1">MAVKAKANSPAAAGELTARQRKRKENLKLVKRNYQLYFFLIPAVVFIAMFMYFPLYGLQIAFKNYRTGDGIWGSEWVGLKWFEQFFNSPNFSTLLANTLIVSIYSLVVSFPFPIILALILNYVKNLRFKKFAQTVTYMPYFISTVVLVAMMTLFFSPSSGFINTIIESLGGQPQYFMGESKFFRHLYVWSGVWQSMGYSSIIYIAALSGVSPELHESATIDGANILQRILHIDIPTIMPTMVILLIMALGNVMNVGYEKVYLMQSDMTLDVSEVISTYVYKIGLKNQQFSFSSAIGLFNNVINFIILILANTTANKITGSGLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ29</accession>
    <name>R6YQ29_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplI</name>
        <name evidence="9" type="ORF">BN815_01906</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL9 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30701">
        <property type="protein sequence ID" value="CDD30701"/>
        <property type="gene ID" value="BN815_01906"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.430.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00503">
        <property type="entry name" value="Ribosomal_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000244">
        <property type="entry name" value="Ribosomal_L9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020594">
        <property type="entry name" value="Ribosomal_L9_bac/chp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020069">
        <property type="entry name" value="Ribosomal_L9_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036791">
        <property type="entry name" value="Ribosomal_L9_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020070">
        <property type="entry name" value="Ribosomal_L9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036935">
        <property type="entry name" value="Ribosomal_L9_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21368">
        <property type="entry name" value="PTHR21368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03948">
        <property type="entry name" value="Ribosomal_L9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01281">
        <property type="entry name" value="Ribosomal_L9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55653">
        <property type="entry name" value="SSF55653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00158">
        <property type="entry name" value="L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00651">
        <property type="entry name" value="RIBOSOMAL_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 9" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="RIBOSOMAL_L9" evidence="8">
        <location>
            <begin position="13"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="149" mass="16334" checksum="A2AADE0F58A0D946" modified="2013-07-24" version="1">MKVVLLQDVKSIGKKGELVNVSDGYARNFLLPRKLAKEANAQAMNELKNAEAAREYKIKTETENAQKNAGALSGKTLKIYAKPGQAGRIFGSVTAKEIAEEIKKQFGIEVDKRKVVLPMDIKAFGTYNFDVKFYGGITASMSVAVCEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQP8</accession>
    <name>R6YQP8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Filamentation induced by cAMP protein Fic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02058</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000338">
        <property type="protein sequence ID" value="CDD30896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30896">
        <property type="protein sequence ID" value="CDD30896"/>
        <property type="gene ID" value="BN815_02058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003812">
        <property type="entry name" value="Fido"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036597">
        <property type="entry name" value="Fido-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040198">
        <property type="entry name" value="Fido_containing"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13504">
        <property type="entry name" value="PTHR13504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02661">
        <property type="entry name" value="Fic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140931">
        <property type="entry name" value="SSF140931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51459">
        <property type="entry name" value="FIDO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fido" evidence="2">
        <location>
            <begin position="92"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR640198-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="27957" checksum="93D59B44CDB8130F" modified="2013-07-24" version="1">MNGTFKAVERWQSHQLRCPKDLDELLRGFRPLFAYHDHLLEGREIPLATVEEFFKTGAVSQFSGDPKDLMLLQGQRNCYEYLRERVLARDDLETSLVLEVHRILTSGTYTEPFYLVNGERPGELKKRDYVTAVNAVGAAARDVGRELDHLVEEVSGYCGSELLQVAAYFHCRFENIHPFAAGNGATGRMLMNYFLMIRDHPPVVFFAEDKEEYLQCLTTYDQQRDPRPLAAFLEKELAKTWAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQR1</accession>
    <name>R6YQR1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02068</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30906">
        <property type="protein sequence ID" value="CDD30906"/>
        <property type="gene ID" value="BN815_02068"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="SSF50985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="397"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="432"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="462"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="393"/>
            <end position="590"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="604" mass="65288" checksum="4FF899BD26784CD5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSP2</accession>
    <name>R6YSP2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Biotin_lipoyl_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00406</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000428">
        <property type="protein sequence ID" value="CDD31571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31571">
        <property type="protein sequence ID" value="CDD31571"/>
        <property type="gene ID" value="BN815_00406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="4">
        <location>
            <begin position="76"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="128"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="560"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="318"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="145"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="2">
        <location>
            <begin position="613"/>
            <end position="627"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="628"/>
            <end position="642"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="642" mass="68523" checksum="625FB2731D7B3F9D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSV6</accession>
    <name>R6YSV6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative enoyl-(Acyl-carrier-protein) reductase II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000441">
        <property type="protein sequence ID" value="CDD31676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31676">
        <property type="protein sequence ID" value="CDD31676"/>
        <property type="gene ID" value="BN815_00437"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="2"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="14042" checksum="E804B91162E511F9" modified="2013-07-24" version="1">MQVGTRFLVAEECGVHPNYKKKVLKANDIATMVTGKRLGHPVRQIKNQFAKDYAKAEYSQISDEELEKLGRGALYRAAVEGDEKTGDFLAGQISGMINKEQPAAEIIQEMFQEAEEVLKGAGKWVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT22</accession>
    <name>R6YT22_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)</fullName>
            <ecNumber evidence="2">3.6.1.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00460</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + P(1),P(4)-bis(5'-adenosyl) tetraphosphate = 2 ADP + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:24252"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58141"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.1.41"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.41" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31756">
        <property type="protein sequence ID" value="CDD31756"/>
        <property type="gene ID" value="BN815_00460"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005249">
        <property type="entry name" value="YqeK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00488">
        <property type="entry name" value="TIGR00488"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="4">
        <location>
            <begin position="18"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012506"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="22030" checksum="7E71DBD06EFDAB63" modified="2013-07-24" version="1">MTYAQYEQEVKRHLTDKRFFHSQCVAAEAARLAQRYGADVEKARLAGILHDIMKDTAPQEQLKILQDSGIILTKTQSRNRKLWHSLAGAAYLRDKLGVADEEILSAVRCHTSGKGDMTLLEKVLFVADYISADRDYPGVEDMRLAADRSLEEAMVEGILFTVNELMEQRLPVAAESIQAYNDAILLLETQKEQME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT27</accession>
    <name>R6YT27_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">dITP/XTP pyrophosphatase</fullName>
            <ecNumber evidence="6">3.6.1.66</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Non-canonical purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Non-standard purine NTP pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate diphosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Nucleoside-triphosphate pyrophosphatase</fullName>
            <shortName evidence="6">NTPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00465</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + ITP = diphosphate + H(+) + IMP</text>
            <dbReference type="Rhea" id="RHEA:29399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:61402"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + XTP = diphosphate + H(+) + XMP</text>
            <dbReference type="Rhea" id="RHEA:28610"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57464"/>
            <dbReference type="ChEBI" id="CHEBI:61314"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>dITP + H2O = dIMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28342"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61194"/>
            <dbReference type="ChEBI" id="CHEBI:61382"/>
            <dbReference type="EC" id="3.6.1.66"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the HAM1 NTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.66" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31761">
        <property type="protein sequence ID" value="CDD31761"/>
        <property type="gene ID" value="BN815_00465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035870">
        <property type="term" value="F:dITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036220">
        <property type="term" value="F:ITP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036222">
        <property type="term" value="F:XTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009146">
        <property type="term" value="P:purine nucleoside triphosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00515">
        <property type="entry name" value="HAM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01405">
        <property type="entry name" value="Non_canon_purine_NTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020922">
        <property type="entry name" value="dITP/XTP_pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002637">
        <property type="entry name" value="Ham1p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11067">
        <property type="entry name" value="PTHR11067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01725">
        <property type="entry name" value="Ham1p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00042">
        <property type="entry name" value="TIGR00042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="7"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="144"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="170"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="165"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="20905" checksum="56DF29444D3214EE" modified="2013-07-24" version="1">MKFVIATHNQGKVVEFKRMLEPMGIEVVTAQLSEPEETGKTFMENAFIKAEAACKETGLPAVADDSGLCVDYLDGAPGIYSARFAQPGKRRLTVLEKLQGVPAEQRGAHFVSAVCCVFPNGDKIEAEGKCFGTIAFDSRGENGFGYDSIFEQEGRTFGEMSDEEKDARSHRGKAFALFEEKLKEYLQKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB87</accession>
    <name>R6ZB87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00709</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27737">
        <property type="protein sequence ID" value="CDD27737"/>
        <property type="gene ID" value="BN815_00709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="38" mass="4275" checksum="1C4E03C3435F0EAB" modified="2013-07-24" version="1">MKKQEESPKALKKQEEAPKTLTKAEPAPKKAPRKATKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBF3</accession>
    <name>R6ZBF3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Fumarate hydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00718</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I fumarase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000063">
        <property type="protein sequence ID" value="CDD27807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27807">
        <property type="protein sequence ID" value="CDD27807"/>
        <property type="gene ID" value="BN815_00718"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004646">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdA-typ_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05681">
        <property type="entry name" value="Fumerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00722">
        <property type="entry name" value="ttdA_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="94" mass="9879" checksum="A36C3224761DD265" modified="2013-07-24" version="1">MLGVGIGGDFELVAMLAKKALCRSVSQRNPDPFYAELEERMLQAVNSTGVGPQGFGGETTALAVNIEAYPTHIAGLPVAVNVGCHVTRHKSVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDE1</accession>
    <name>R6ZDE1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28497">
        <property type="protein sequence ID" value="CDD28497"/>
        <property type="gene ID" value="BN815_00855"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10844" checksum="39DB7019C868F1FA" modified="2013-07-24" version="1">MKISYKKLWVLLMIDHSQNAREVAASTKRKEKLQKQLKECRDYDEMIAHLALSRIKLDLDDGVKVNYRKLQTAGDGKFYEVLADSKNIMAKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDF4</accession>
    <name>R6ZDF4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9 10">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dnaA</name>
        <name evidence="14" type="ORF">BN815_00864</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 11">Belongs to the DnaA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28522">
        <property type="protein sequence ID" value="CDD28522"/>
        <property type="gene ID" value="BN815_00864"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1750.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 10" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="12">
        <location>
            <begin position="131"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="13">
        <location>
            <begin position="343"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="139"/>
            <end position="146"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD28522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="437" mass="49664" checksum="7739BEAE3CAB001B" modified="2013-07-24" version="1">MDSFDQAWELICQYCKSNITEVAYNTWFSRLKPVSLDFDRATAVIEAPNEFHKQTLLRCYSDLLKEAFDNVFGGGISFQICVHEELKQQQAAPDPFEQDDYELTFDTFVVGPSNRFAHAACQAVAAKPALLYNPLFIYGSSGLGKTHLLNAVAKEFKKNFPDRSVIYAKSEDFTNEIIAAIARGTTPAFREKYRKADLFLMDDIQFIAGKNSVQEEFFHTFNTLYEAKKQIVLTSDRPPRDIATLEDRLKTRFEWGLTADVQAPDFETRIAIITRKAESLHLEIPETVCEYIANKLKSNIRQLEGAVKKLRAYHLLENKPINIATAQAAISDIINNSQPTPVTVDKIIEEVARTYGGITPEDIRSQKRNANISKARQVSMYIVREITQMSMVEIGQTFGGRDHSTVVYAVRQVEKDIKKDPHTKAMVDDIIKNIRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDJ5</accession>
    <name>R6ZDJ5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28587">
        <property type="protein sequence ID" value="CDD28587"/>
        <property type="gene ID" value="BN815_00887"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="12"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27741" checksum="9F504A31EC610450" modified="2013-07-24" version="1">MREAEKVRVLLIIPAYNEEANIQRVIGRVREYRKTCPYQLDYVVINDGSTDSTARICRENGIHHISLLQNLGIGGAVQTGYLYAQREGYDIAVQFDGDGQHDLNSLPQLLAPVVRGDCDFCVGSRFLDKSSAFQSTPLRRVGIQYLSWLIRLFTGTKVTDPTSGFRAANQAVIQDLADYYPADYPEPESIVQIKKMRHRIQEVQVNMFQREGGQSSIRSWKSIYYMIKVSVAVVCASLQKGRKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGF4</accession>
    <name>R6ZGF4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01186</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29527">
        <property type="protein sequence ID" value="CDD29527"/>
        <property type="gene ID" value="BN815_01186"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="38"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="38"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="15563" checksum="377F1695B3040A85" modified="2013-07-24" version="1">MTVKAPSDTVWYLSKPCATPELLARVRAMLRRKENYLPDLLTVGGLTLNRSTYELSWQGKSQSLSGREFQILEMLMERPGFVVTTNQLLSHVWGWDSDVDCSVVWVHISNIRKKLARLGAPAGIRFLRGAGYVLEVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIK2</accession>
    <name>R6ZIK2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01516</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30282">
        <property type="protein sequence ID" value="CDD30282"/>
        <property type="gene ID" value="BN815_01516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024523">
        <property type="entry name" value="DUF3793"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12672">
        <property type="entry name" value="DUF3793"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="22776" checksum="D95CC928692B1CE0" modified="2013-07-24" version="1">MAGARAEGAAASLGRSCVTAALPLERCLVEYCAPTLAGIKTASMFCIPLEDAGCLEAQVAQWDAALRGKGLSLRMLRRQGDRALLYLFRPARLQQDLDQPGVRSLLARYGYRAFQAEEALAQLQTRLREQGGFPHEIGLFLGYPLGDVAGFIRNRGKNCKCSGCWKVYCNELEAQKRFAQIQKCRQVYTRLWTQGRSLWQLTVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIQ0</accession>
    <name>R6ZIQ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01566</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30332">
        <property type="protein sequence ID" value="CDD30332"/>
        <property type="gene ID" value="BN815_01566"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="8262" checksum="1275CEAD644BEFC9" modified="2013-07-24" version="1">MKEKAFPQWAADAVRWTKEHSQRALGLGLAALGCVLAALARTGGGDPFQDFALGLLMGLGVGCMAVGAVFLALSLRYQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIU0</accession>
    <name>R6ZIU0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ACR COG1399</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01598</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30377">
        <property type="protein sequence ID" value="CDD30377"/>
        <property type="gene ID" value="BN815_01598"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003772">
        <property type="entry name" value="YceD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02620">
        <property type="entry name" value="YceD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="163" mass="17954" checksum="2CB00FE8465A5655" modified="2013-07-24" version="1">MTIDLRKYYLGSSDELEWDLELSGMELGGVKPFCAPVKVRGQLKGSPDSVELSGTAVYTMTMPCDRCFELTTQERGLSFFHVLVRALSDEEDDNGEFVVVPDDQLDLDQLLTEDILLDVPSKFLCSPGCKGLCPTCGKNLNQGPCGCERDTVDPRLAVLKDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJV0</accession>
    <name>R6ZJV0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Cyclase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30727">
        <property type="protein sequence ID" value="CDD30727"/>
        <property type="gene ID" value="BN815_01932"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118">
        <property type="entry name" value="PTHR31118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="SSF102198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="20705" checksum="F7BBBA7FBB8BB434" modified="2013-07-24" version="1">MKLYDISKEIFSAAVFPGDPAPAFQPAQRLAEGGHCNLTQVTLGTHSATHMDAPWHFVPGGKTIDQVELSRCVGPCQVVEAQGLLEKTWAAAVLQQGVKRLLLKGQAQLSVEAAQELAQGGLLLLGVEAMSVAPDDDPAPVHRALLEREVAVLESIDLRQVPAGDYILLAQPLKYGGLDGAQVRALLVEGSLEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK15</accession>
    <name>R6ZK15_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Deoxyuridine 5'-triphosphate nucleotidohydrolase</fullName>
            <shortName evidence="4">dUTPase</shortName>
            <ecNumber evidence="4">3.6.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">dUTP pyrophosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dut</name>
        <name evidence="6" type="ORF">BN815_02001</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>dUTP + H2O = diphosphate + dUMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10248"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.6.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the dUTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.23" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30797">
        <property type="protein sequence ID" value="CDD30797"/>
        <property type="gene ID" value="BN815_02001"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004170">
        <property type="term" value="F:dUTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046081">
        <property type="term" value="P:dUTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00116">
        <property type="entry name" value="dUTPase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008181">
        <property type="entry name" value="dUTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029054">
        <property type="entry name" value="dUTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11241">
        <property type="entry name" value="PTHR11241"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00692">
        <property type="entry name" value="dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00576">
        <property type="entry name" value="dut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="dUTPase" evidence="5">
        <location>
            <begin position="16"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="68"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="85"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="148" mass="15570" checksum="6320E6D6673D8905" modified="2013-07-24" version="1">MEGNMVLRMKKVRPGAQLPQRQTAGSAGFDLCACIQEPVVLEPGDSALFPTGLAAEIPQGHVGLIFTRSGLGVKHGVAVSNGVGVIDSDYRGELHVGLRNHSREAYAIQPGERVAQLVILPVCLPELAEVEELSETARGQGGFGSTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK34</accession>
    <name>R6ZK34_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Beta-galactosidase</fullName>
            <ecNumber evidence="3">3.2.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Lactase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00166</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides.</text>
            <dbReference type="EC" id="3.2.1.23"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyl hydrolase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.23" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30817">
        <property type="protein sequence ID" value="CDD30817"/>
        <property type="gene ID" value="BN815_00166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009341">
        <property type="term" value="C:beta-galactosidase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004565">
        <property type="term" value="F:beta-galactosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004199">
        <property type="entry name" value="B-gal_small/dom_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036156">
        <property type="entry name" value="Beta-gal/glucu_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006101">
        <property type="entry name" value="Glyco_hydro_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006103">
        <property type="entry name" value="Glyco_hydro_2_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006102">
        <property type="entry name" value="Glyco_hydro_2_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006104">
        <property type="entry name" value="Glyco_hydro_2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032312">
        <property type="entry name" value="LacZ_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02929">
        <property type="entry name" value="Bgal_small_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16353">
        <property type="entry name" value="DUF4981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00703">
        <property type="entry name" value="Glyco_hydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02836">
        <property type="entry name" value="Glyco_hydro_2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02837">
        <property type="entry name" value="Glyco_hydro_2_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00132">
        <property type="entry name" value="GLHYDRLASE2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01038">
        <property type="entry name" value="Bgal_small_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49303">
        <property type="entry name" value="SSF49303"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bgal_small_N" evidence="8">
        <location>
            <begin position="745"/>
            <end position="1009"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1011" mass="114053" checksum="D93DDB821BDADE24" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKI6</accession>
    <name>R6ZKI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Biotin/lipoyl attachment domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02131</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30972">
        <property type="protein sequence ID" value="CDD30972"/>
        <property type="gene ID" value="BN815_02131"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0092">Biotin</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="6431" checksum="416ED27997125DE1" modified="2013-07-24" version="1">MPGTILDVKVAAGQAVKSGDVLMILEAMKMENEIMAPHDGTITAVSVTKGTAVESGTLLCTIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKJ9</accession>
    <name>R6ZKJ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02146</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30987">
        <property type="protein sequence ID" value="CDD30987"/>
        <property type="gene ID" value="BN815_02146"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007163">
        <property type="entry name" value="DUF368"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37308">
        <property type="entry name" value="PTHR37308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04018">
        <property type="entry name" value="DUF368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="29267" checksum="64EA4635DE2F743D" modified="2013-07-24" version="1">MKEKNTGVLRLVLRVLQGMLIGVGAVLPGISGGVLCVVFGIYKPIMELLSSPIKKCKTHVPRLLPVIVGAVLGFLGVAKVLAFFLERYPDQSVCLFVGLIAGMLPSLFREAGEQGRTRGSWISLAAAFAVVLALLLSLNVLSVTIAPSFGWYLFCGFCMALSIIAPGMSFSTLLMPLGLYTPLVDGIGNLDFGVLVPAGIGAVVTIVCLAKAINALFTHFYSCAFHAIVGIVIAATLVIIPFGSFTQGVGTAVANIVCLVVGVVAALALDKFNQSVPKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKX7</accession>
    <name>R6ZKX7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Formate--tetrahydrofolate ligase</fullName>
            <ecNumber evidence="6">6.3.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Formyltetrahydrofolate synthetase</fullName>
            <shortName evidence="6">FHS</shortName>
            <shortName evidence="6">FTHFS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">fhs</name>
        <name evidence="7" type="ORF">BN815_02255</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(6S)-5,6,7,8-tetrahydrofolate + ATP + formate = (6S)-10-formyltetrahydrofolate + ADP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20221"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 6">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the formate--tetrahydrofolate ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.3" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31102">
        <property type="protein sequence ID" value="CDD31102"/>
        <property type="gene ID" value="BN815_02255"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004329">
        <property type="term" value="F:formate-tetrahydrofolate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00477">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01543">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000559">
        <property type="entry name" value="Formate_THF_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020628">
        <property type="entry name" value="Formate_THF_ligase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01268">
        <property type="entry name" value="FTHFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00721">
        <property type="entry name" value="FTHFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00722">
        <property type="entry name" value="FTHFS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 6" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="65"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="558" mass="59094" checksum="AD106AD62CE4A0AD" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL66</accession>
    <name>R6ZL66_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC-2 family transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02336</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31192">
        <property type="protein sequence ID" value="CDD31192"/>
        <property type="gene ID" value="BN815_02336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28384" checksum="C1C76454827E59EC" modified="2013-07-24" version="1">MGKDLGAIWRNKGTRALLMLLPVTLIVLLPLVYSVAISFLPTEDSLALPQDIAAMVGNLEGYGPRRQWMAAFTTLLCPMLFLCVPIVCSVTAAARVFVGEKEGGTLETLMLSSVDAKSLLHVKVTCCTLLSMAISLVSFVAFLIVVSVADILMGAPYFFNLEWLVCVVLLMPMVALFSVLFVCWELPRVHSVGEAMQTMGYLMLPLLVLYLVQFTGVFRITVPLLLGIAVLLGVLSIVLFNVTSRQFQPERLFTTCQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLA1</accession>
    <name>R6ZLA1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">DivIVA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02371</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31227">
        <property type="protein sequence ID" value="CDD31227"/>
        <property type="gene ID" value="BN815_02371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019933">
        <property type="entry name" value="DivIVA_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007793">
        <property type="entry name" value="DivIVA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35794">
        <property type="entry name" value="PTHR35794"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05103">
        <property type="entry name" value="DivIVA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03544">
        <property type="entry name" value="DivI1A_domain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="193"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="43"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="199"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="227"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="264"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="318"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="38074" checksum="14C04A3F06A7E646" modified="2013-07-24" version="1">MLTVKEINEVSFGKAGFSGYKPEDVDNFIDEVVESFTQLLAERDDALQQEAQLDQQVKELTNQVAQLKAKNAELQKKLGILAQKIESYREEEDGIKEAILSAQKIGKDAIQEAKDKAAVMLADAEENAKALLANARDDAAKAAREYAIQVEQKRNELEEMKRQVSAFRVSLLEMYKKHLESINHIPSFRFKDTQPAVSRPEPQPAPQPEPEPEPQPVYREEPRPVSAPVSVPEPKPEPEPVPQPVVEQPKMEPAPQETPELPQEEPTLQDKVDYSREQLRQEPHSYHPDDNDLSQVGIDLEAYSDIPESLQREKASHFSNLEFGDDVDLGRKKRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLN8</accession>
    <name>R6ZLN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DnaJ domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00304</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31372">
        <property type="protein sequence ID" value="CDD31372"/>
        <property type="gene ID" value="BN815_00304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013105">
        <property type="entry name" value="TPR_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07719">
        <property type="entry name" value="TPR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="domain" description="J" evidence="2">
        <location>
            <begin position="3"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="114"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="206" mass="22292" checksum="234DA101636F22AF" modified="2013-07-24" version="1">MTDPYKVLGVSPSATDEEVKDAYRKLAKKYHPDQYADSPLKDLADEKMKEINEAYDAITAQRKAGGGQGYNGAYNNVGAGGSSGFNDVRSLIMSGRIADAEQILNGVPPQRRNAEWYFLKGSVLYRRGWLEEAKDHFSRACQMDPGNPEYSAALNQAMNQGSGVYGGYRPNANMNAGGCNSCDMCSSLICADCCCECMGGDLISCC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM62</accession>
    <name>R6ZM62_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LSU ribosomal protein L30P</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00383</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL30 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31507">
        <property type="protein sequence ID" value="CDD31507"/>
        <property type="gene ID" value="BN815_00383"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01658">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036919">
        <property type="entry name" value="L30_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005996">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016082">
        <property type="entry name" value="Ribosomal_L30_ferredoxin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00327">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002211">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55129">
        <property type="entry name" value="SSF55129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01308">
        <property type="entry name" value="rpmD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 6" id="KW-0689">Ribosomal protein</keyword>
    <feature type="domain" description="Ribosomal_L30" evidence="5">
        <location>
            <begin position="2"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="55" mass="5918" checksum="309DB8B9A5DCCCE1" modified="2013-07-24" version="1">MKITLKKSLIGSKKDQIATAASLGLKKVGDVCEQPDNAQTQGKLKKIGHLVEVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMA3</accession>
    <name>R6ZMA3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC-type antimicrobial peptide transport system permease component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00407</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000428">
        <property type="protein sequence ID" value="CDD31572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31572">
        <property type="protein sequence ID" value="CDD31572"/>
        <property type="gene ID" value="BN815_00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="297"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="340"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="378"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="8">
        <location>
            <begin position="19"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="7">
        <location>
            <begin position="325"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="419" mass="46192" checksum="3ABBBC256275D8E6" modified="2013-07-24" version="1">MIENIRLSFQGIWAHKMRSFLTMLGIIIGIASIISIVSTIKGTNEQIKRNLIGAGNNVVRVQLYQNDTDWVYEVTSYGMPQGIPQVDEDTYQEILDMPQVEDAAVYTRRMDYNNSLYYGNEGIDGCEMLGVDNSYFETCQYVVDRGRMFVPADFNEYRPVAIIDNNTAEQLFQGEDPVGKTIEYNSTALVVVGVVEVANRFEPVINSIEDYYTYMGNSTSGKVFIPNAIWPSLFAYDEPQEVAVRCQSTEAMSTVGTQVADLLNENNQNETIKYRAEDVLQQAQELQELSNATNQQLVWIASISLLVGGIGVMNIMLVSVTERTREIGLKKAIGAKKGRILWQFLTEAAVLTSLGGILGVAAGIGMAELVSHLTQAPVAISVPSIFLAVLFSMAIGVVFGLLPSIKAANLNPIDALRHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTT9</accession>
    <name>R6XTT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VanZ-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00513</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000015">
        <property type="protein sequence ID" value="CDD27138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27138">
        <property type="protein sequence ID" value="CDD27138"/>
        <property type="gene ID" value="BN815_00513"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006976">
        <property type="entry name" value="VanZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04892">
        <property type="entry name" value="VanZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="VanZ" evidence="2">
        <location>
            <begin position="14"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="19627" checksum="8FBF8DB38D3B72A2" modified="2013-07-24" version="1">MTGKRKILLTVLSLLLVCNLAFIWGNSLVSRSDSHDLSVGVLGFLPGFIRDLFPNQEQLVHIVRKMAHFTEFACLGGLSCGLLATARTVKLHPFFHVWAGGFFVAAIDETIQIFTGRGSQLQDVWLDFAGFSAGLLAVLLIRALVLRSKPEESPKEVDNVIAFPKGHDAFKHLHSSGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVD8</accession>
    <name>R6XVD8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chaperone protein HtpG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Heat shock protein HtpG</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">High temperature protein G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">htpG</name>
        <name evidence="7" type="ORF">BN815_00049</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Molecular chaperone. Has ATPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the heat shock protein 90 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27708">
        <property type="protein sequence ID" value="CDD27708"/>
        <property type="gene ID" value="BN815_00049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00505">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019805">
        <property type="entry name" value="Heat_shock_protein_90_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037196">
        <property type="entry name" value="HSP90_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001404">
        <property type="entry name" value="Hsp90_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020575">
        <property type="entry name" value="Hsp90_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11528">
        <property type="entry name" value="PTHR11528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00183">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002583">
        <property type="entry name" value="Hsp90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00775">
        <property type="entry name" value="HEATSHOCK90"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110942">
        <property type="entry name" value="SSF110942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00298">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="HATPase_c" evidence="6">
        <location>
            <begin position="25"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="region of interest" description="A; substrate-binding" evidence="5">
        <location>
            <begin position="1"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="region of interest" description="C" evidence="5">
        <location>
            <begin position="558"/>
            <end position="630"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="630" mass="72443" checksum="1653BF6739F3D513" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZM5</accession>
    <name>R6XZM5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00494</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27040">
        <property type="protein sequence ID" value="CDD27040"/>
        <property type="gene ID" value="BN815_00494"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016998">
        <property type="term" value="P:cell wall macromolecule catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002053">
        <property type="entry name" value="Glyco_hydro_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01183">
        <property type="entry name" value="Glyco_hydro_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51904">
        <property type="entry name" value="GLYCOSYL_HYDROL_F25_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="32658" checksum="1ABBA81A8A614C64" modified="2013-07-24" version="1">MALPKRGIDISEFNGSVDIAALQGQVDFVIIRCGYGRDYANRGYGSDYANQDDPQFEANVKKCQAAGIPWGTYLYSYAKTKAMAQSEAAHTLRLLQGRRPPYGVWYDVEDSSLPSGEALIDNVVAYCQALEAAGLYCGVYASLSWWEGRLNSPRLDRFDKWVAQWNSQLDYQGPVGLWQFTDRLMLNGKAFDGNWAYRDYPALTGEEEDTMTQAEVIALARAEAQKVYNENEAKYKTLASLPSWAKAPVEQVYRELGLAGTGGPGQNTQLDASETYIRALTVIAKVLEKLDAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0K6</accession>
    <name>R6Y0K6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01191</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; Fe-Mo cofactor biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the radical SAM superfamily. NifB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29538">
        <property type="protein sequence ID" value="CDD29538"/>
        <property type="gene ID" value="BN815_01191"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00782"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023885">
        <property type="entry name" value="4Fe4S-binding_SPASM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005980">
        <property type="entry name" value="Nase_CF_NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43787:SF3">
        <property type="entry name" value="PTHR43787:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04085">
        <property type="entry name" value="rSAM_more_4Fe4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="82"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="48709" checksum="CE83BD0C3FD31E97" modified="2013-07-24" version="1">MYKISKYTFVRQIGMEYILANTYTGAVGKIDANLYHKIGNGSSALKNLDQETWEILKSNGFIVPNSLDEYQRIIQGEKKAIFSQTDTLFLTISTSARCNYACSYCFEPMGDQTNLPIMNHETAYNVITYVKEKITSSIKKLVITWFGGEPLLGLDAIEKISKVIIPFCDDNLVEYHAEIITNGYLLTAQSARKLSEDYRISSAQITIDGPEEIYEKIKQTPKGAYQRVLQNIKDSSKFMKINIRLNIPEYFYPQMPNFIDTLMLAIGNCNIKIYLAEVCDDWTDYCGKKEAKTTTYWIQNSQFIKYMKKKYPHALFTSKLPLAYCGMKCGMIKKHNITIGAKGELYRCVHMVGRDKEVIGTCTEGFYYNEADCKFDEFEHPSICKDCIVFPICMTGCPNDILEGKMRAPCEMKRESIIQDLIKQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1H2</accession>
    <name>R6Y1H2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histidine phosphatase superfamily (Branch 1)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01304</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29918">
        <property type="protein sequence ID" value="CDD29918"/>
        <property type="gene ID" value="BN815_01304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="24850" checksum="E73B500139ADB747" modified="2013-07-24" version="1">MVTTLYIIRHCQSAGNLTGRFQGRFDAPVSEAGEKQLDLLSLRFRNEHLDAIYSSPLVRAYRTAEAVNKFHGLPIQKDEGLLEIDVGDMENMLLSDIGQKYPELAYNWDHAPDLCRFPHGETMEEAYRRVNRAIDRIIAENPGKTVAVTTHGGVIKNLNARVEFGNIQGLRQGKVFGNTSVSVLESENGALRWKLVNDMSHLPEELRRAPMQYTFHTEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y245</accession>
    <name>R6Y245_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the BioY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30138">
        <property type="protein sequence ID" value="CDD30138"/>
        <property type="gene ID" value="BN815_01390"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015225">
        <property type="term" value="F:biotin transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003784">
        <property type="entry name" value="BioY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34295">
        <property type="entry name" value="PTHR34295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02632">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016661">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="91"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="114"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR016661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="184" mass="18547" checksum="F418B8C12AADC3C6" modified="2013-07-24" version="1">MKLQWKNKLQRTVMAGVFAALLVVLSQVSIPLPTGIPVTLQTFAVALCGCVLGPAVGSAAVGVYLALGAVGVPVFAGFSGGAGALVGMTGGYLWAFLPMAFLCGLGAQQKNKFLALALGLAGLAVCHGCGAAQFALVMSISPAQAFLAASAPYLIKDVLSLVLAYGAARAVVLALKRARLVTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y285</accession>
    <name>R6Y285_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00730</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000069">
        <property type="protein sequence ID" value="CDD27925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27925">
        <property type="protein sequence ID" value="CDD27925"/>
        <property type="gene ID" value="BN815_00730"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8258" checksum="62D84C5CAB1CA744" modified="2013-07-24" version="1">MAIKNRLSREYSKFQKLGGTVRGLCKTLNETYGFSLNVDTLRNTLSSANHSTLDLFCVLADLPVRNDTSTFGGAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y288</accession>
    <name>R6Y288_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30173">
        <property type="protein sequence ID" value="CDD30173"/>
        <property type="gene ID" value="BN815_01418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="52" mass="5988" checksum="ABA02A398920B7E9" modified="2013-07-24" version="1">MNHKQKNSKSFENRQGQGQQNQQSHTPGQKVQQEIPSYGSQSQHQKPESCKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2T8</accession>
    <name>R6Y2T8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01580</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000225">
        <property type="protein sequence ID" value="CDD30353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30353">
        <property type="protein sequence ID" value="CDD30353"/>
        <property type="gene ID" value="BN815_01580"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="12820" checksum="52BC12CA92D6998C" modified="2013-07-24" version="1">MREETTSLSLVAEKSSPKGVSFSRISLAFTTLPLWAVAMRPVRNSVTKGCTFRAVLEPVVEYRAWPMACRAGGIFSITWGGKASVTRPTSLWQTMALPRAAAMPAPSWPRCCMASSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2W7</accession>
    <name>R6Y2W7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">P-loop_TraG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00132</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30373">
        <property type="protein sequence ID" value="CDD30373"/>
        <property type="gene ID" value="BN815_00132"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043964">
        <property type="entry name" value="P-loop_TraG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19044">
        <property type="entry name" value="P-loop_TraG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="P-loop_TraG" evidence="1">
        <location>
            <begin position="18"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="151" mass="17327" checksum="70097AD6368ECC1B" modified="2013-07-24" version="1">MGHDGASYRTLNRITQNRAKGRNTFIFIDEIYLLFQHEYSANFLFTLWKRVRKYGAYCTGITQNVDDILKSHTARTMLANSEFIIMLNQASTDRIELAKLLNISDLQMSYITNVDAGQGLLKVGSSLVPFINKFPRNTELYKLMTTKFGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Y5</accession>
    <name>R6Y2Y5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00778</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28190">
        <property type="protein sequence ID" value="CDD28190"/>
        <property type="gene ID" value="BN815_00778"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018130">
        <property type="entry name" value="Ribosomal_S2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00962">
        <property type="entry name" value="RIBOSOMAL_S2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="151"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="258"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="36"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="351"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="384"/>
            <end position="391"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="599" mass="67669" checksum="15F0E6D0DA26CF32" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Z4</accession>
    <name>R6Y2Z4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CarD_TRCF domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01614</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30393">
        <property type="protein sequence ID" value="CDD30393"/>
        <property type="gene ID" value="BN815_01614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042215">
        <property type="entry name" value="CarD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CarD_TRCF" evidence="1">
        <location>
            <begin position="1"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="19088" checksum="B5E2D2CAC2025705" modified="2013-07-24" version="1">MFQPGDFVVYGSSGVCRVIQVGALEGKSADPTRQYYTLQPVFESERIYTPVDSGVFMRPAMTKEQAQAFIRQIPSIGEDLCTERNPATLRIHYEASLQSHQCEELVRLIKGIRHKCRETEKKGRKMGQVDQRYRKKAEGLLHGELAIALGIPLDQVERYIQENMEEAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y319</accession>
    <name>R6Y319_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28235">
        <property type="protein sequence ID" value="CDD28235"/>
        <property type="gene ID" value="BN815_00791"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="258" mass="28506" checksum="030E73B6CC9CD2A7" modified="2013-07-24" version="1">MKLKQSIRYQLADFIGPVIVYYGIVAAAHVVLFLAWIFTPATIHLGGGLTVFSGLFLFICGLCSFHDNLPMHLQNGVSRKTMYTAWLVVTVIVSASMALLDALLATLIDFTPLWSVWQGGNDVHLFISCFGLKPLARAGFGEAAILVLFSWLFSFVLLALAMTLGYFIVVFFYRLPVKLRIVVGACAGFLLFFGVPGVKILDTNLLGEGLRAFFRQYLEPALEFIWENPFALMGTWAVAAVALAAVTWLILRRTTVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y347</accession>
    <name>R6Y347_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00799</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28270">
        <property type="protein sequence ID" value="CDD28270"/>
        <property type="gene ID" value="BN815_00799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="15735" checksum="315774C44D60EABD" modified="2013-07-24" version="1">MPWSEMLFPLLFLALGAACLWAAWVFRRFAKKRETAYTVKAWAQVVQVLASADSDGDPLYTPVLHLLAEGEGFTKRGSPTREEGRFQTGAWVEVRYPPGRPSRFMQAGEVGTSAASAVLCLGAFLCFVGALVQLVQNWNLYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Q5</accession>
    <name>R6Y3Q5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ribosomal protein S12 methylthiotransferase RimO</fullName>
            <shortName evidence="7">S12 MTTase</shortName>
            <shortName evidence="7">S12 methylthiotransferase</shortName>
            <ecNumber evidence="7">2.8.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Ribosome maturation factor RimO</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rimO</name>
        <name evidence="11" type="ORF">BN815_01819</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37087"/>
            <dbReference type="Rhea" id="RHEA-COMP:10460"/>
            <dbReference type="Rhea" id="RHEA-COMP:10461"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:29961"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:73599"/>
            <dbReference type="EC" id="2.8.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the methylthiotransferase family. RimO subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.4" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30608">
        <property type="protein sequence ID" value="CDD30608"/>
        <property type="gene ID" value="BN815_01819"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103039">
        <property type="term" value="F:protein methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018339">
        <property type="term" value="P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01865">
        <property type="entry name" value="MTTase_RimO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005840">
        <property type="entry name" value="Ribosomal_S12_MeSTrfase_RimO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041582">
        <property type="entry name" value="RimO_TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43837">
        <property type="entry name" value="PTHR43837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18693">
        <property type="entry name" value="TRAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00274">
        <property type="entry name" value="ribosomal_protein_S12_methylth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01125">
        <property type="entry name" value="TIGR01125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="11" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTTase N-terminal" evidence="9">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="10">
        <location>
            <begin position="142"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="8">
        <location>
            <begin position="375"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="49618" checksum="1F51DDFC68C1C213" modified="2013-07-24" version="1">MAYKVGMVSLGCAKNQVDGEVLMASLEKAGFQPVDDAAMADIAIVNTCGFIESAKKESIEEILELAQLKKEGKIKKLVVTGCLGERYQAEMHKELPELDAVIGIGANGDIAQLLTQMMEEDQYVESFPDKSNMPLCGERVLTTPSYFAYVKIAEGCDNRCSYCAIPLIRGGYRSRTMESIEEECRALVADGAKELILIAQDTSRYGIDLYGEYSLAKLMRRLCAIEGLRWLRVLYCYPDSITDELLETMAGEEKIVPYIDLPLQHASGKVLRAMNRRGDRQSLTALMERIREKVPGVVLRTTFITGFPGETEEDFTQLAEFAKDVQFERMGCFAYSQEEDTPAASLPDQVEEEVKEHRAEILMDRQMAIMEAQGLELVGQTLEVLVEGFDRYAECWFGRSYRDAPDIDGKVFFTTEGKRPRLGSFVKVAVTGCMDCDLTGELVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y486</accession>
    <name>R6Y486_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative flavodoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01977</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30773">
        <property type="protein sequence ID" value="CDD30773"/>
        <property type="gene ID" value="BN815_01977"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041183">
        <property type="entry name" value="Cyclophilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18050">
        <property type="entry name" value="Cyclophil_like2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12682">
        <property type="entry name" value="Flavodoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425039" evidence="2">
        <location>
            <begin position="29"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="Flavodoxin-like" evidence="3">
        <location>
            <begin position="112"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Cyclophil_like2" evidence="4">
        <location>
            <begin position="280"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="27"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="388" mass="41044" checksum="4F658636B9870261" modified="2013-07-24" version="1">MKKLLTPLLALALAIVFAACQAAEPSSSVPSSLAPSESSQLSSAVEEGAASSSQLAEPSEAPAGSSALEGSSETGENGGVLIAYFSWAENAVLEEGVDAMTSPSVSDPGNVQQLAGWIQEETGGELFSIQVTDPYPSDWDACLERANEERGQNARPALVEPQVENLDSYDTVFLGYPNWWYGVPMALLTFLEENDLSGKDVYLFCSHGTGGMARSVEIITEAAPEANISDNIFDCYEEDAPASQGDIQAWVAELGLSQPQETTSSETEENDMESTQVAVTCGDLQVVYALNDSPAAQGLLSQLPLTVEVEDFSTNEKVFYPPQELDASDTPLAEGGAGTLAYYAPWGDVVLFYDSFSANSSLFELGEAVSGAENIGQMSGTITVETVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4E8</accession>
    <name>R6Y4E8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Hydrolase_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02025</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000330">
        <property type="protein sequence ID" value="CDD30838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30838">
        <property type="protein sequence ID" value="CDD30838"/>
        <property type="gene ID" value="BN815_02025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="74"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="300" mass="33836" checksum="157C493D9CE6A636" modified="2013-07-24" version="1">MLLGAAVFFFKFSIRRYRKERADEQYEEADSIWNPFAPRMKEAQAYIRAHTREKVKLTSFDGLELAALYLPVERPRGTVIAFHGYRSLATIDFALEVEFLHRLGYDVLLPYQRSHGESQGKYITYGVKERFDCQSWARYAARRWGDRPLFLMGISMGAATVLMASGLELPPNTRGIVADCAFTTPWDIMAHVARRDYKLPRALLWVLLSLLDLLARAAAGFSLKGADTRQALAHTQLPVLFLHGEKDDFVPVSMTEENYHACASPKALRLVPGAEHAQSFGVDTPGCEETIQRFLEGCLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4L5</accession>
    <name>R6Y4L5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein conserved in bacteria</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000336">
        <property type="protein sequence ID" value="CDD30888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30888">
        <property type="protein sequence ID" value="CDD30888"/>
        <property type="gene ID" value="BN815_02050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010697">
        <property type="entry name" value="YspA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38440">
        <property type="entry name" value="PTHR38440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06908">
        <property type="entry name" value="YpsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="19803" checksum="47EF251BDCB54433" modified="2013-07-24" version="1">MEREKCCCFTGHRRIPEQEMLWVRRRLREEILDLAQKGVDTFLTGGALGFDTLAAQEVLRMRAMGLPSLKLVLALPYMNQEAQWSQRDAAVYRALLRQADNVVYTSQEYHRGCLFQRNRYLVDHSAYCVCYLLQERTGTSYTAQYAREQGLEVRNLAQAPWKQQPAAPKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y500</accession>
    <name>R6Y500_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30993">
        <property type="protein sequence ID" value="CDD30993"/>
        <property type="gene ID" value="BN815_02152"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="322" mass="35674" checksum="7AE4047AE170C59F" modified="2013-07-24" version="1">MQLNCFPYPTKITAKCRSLCFTGIPVFFASSFWAKLTRKQFGPDLFPPLPAWQGTPAQRLAPIQRGDFDQPRCIAPGQTPPMAKPFQSPTSYTSRTYTTLSISTSHKPAAPGATCPVRPRTTKYARLFQSPTSYTPRTCAILLMSASDSELPRARLVPCGHAPRIENPGTGPRTCAILSMSAGHSPSPWARLVPCGHAPRIENPGTGPRTCTTLLMSAGHSPPPRARLVPCGHAPQNARRAGIAPRPPCLKKEIYEKETCTHISWHWTGCSGRCSPREPGRFAGFGRCCNGTPSRSRCRRASCRQYRWRWCRRWSPGCRQWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y558</accession>
    <name>R6Y558_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02212</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31058">
        <property type="protein sequence ID" value="CDD31058"/>
        <property type="gene ID" value="BN815_02212"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00034">
        <property type="entry name" value="HTHCRP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH crp-type" evidence="2">
        <location>
            <begin position="151"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="224" mass="25384" checksum="72EB209457BF0C89" modified="2013-07-24" version="1">MAPSMFEPVYKEIFPFWNEISPETRDTICQNSVAMTYLKGTTIHDGTECSGVFFIRSGCLRVYLLSEKGKDITLYRLYAGDMCMLSASCVLQSITFDVMIDAEEDSECYVISGPAFVSVSEANPKIKIFSLETAISRFSDVMWVMQQILFMSMDQRLAIFLTDESKRLGSDTIPFTHEQIAKYMGSAREVVTRMLKYFASEGLVEVSRGGVKILDKKRLWELAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y582</accession>
    <name>R6Y582_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02246</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31093">
        <property type="protein sequence ID" value="CDD31093"/>
        <property type="gene ID" value="BN815_02246"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="18802" checksum="51D07F2F37712A23" modified="2013-07-24" version="1">MGKTRRCLLDLLLAALCVGLGLLLPWAFRWVHNGEQVLLLLQLPVLLCGMLCGPAYGLSCGLLIVLLPQLFPGAAGVALSTGELWELAIYGFLAGLLTYLLAAAPPVLNVLMSLVGAMLLGRVFCGLLDAFVFVPGYTWTQWVGESFVTCLPGIVLQLAAIPLVTLALRRCAIAAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5S2</accession>
    <name>R6Y5S2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000394">
        <property type="protein sequence ID" value="CDD31293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31293">
        <property type="protein sequence ID" value="CDD31293"/>
        <property type="gene ID" value="BN815_00231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="328"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="367"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="396"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="433"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="474" mass="50660" checksum="0A47B34DB7C6AC25" modified="2013-07-24" version="1">MSGKLTSLLASQDMTQGSPSGNLIRFSVPLLIGNLAQQLYSTVDSIVVGYYVGDNALAAVGASGPIMNLLLVLFMGISVGASVMVSQYFGAKDRERLEKTVGTTLTATVVSSIFIMIVGPLITPPVMSALGTPPEIYDMACTYLVILFAGIIGSAFYNILSGVLRGLGDSVTPVVFLIIACLLNIVLDVWFVAGFHWDVAGVAIATIISQIVSGSLCLIRMFFMRDVLSVKPAYLWPKAQYLKQLIRLGLPSGLTQAIFSFAMIILQSLTNSFGTVVIAANTAVMRVDGFAMMPNFTFGTTMTTYTGQNIGAGRIDRVEKGVKDGLKIGLSVSVVLVALILLFGQYLMQMFTSTPEVISTGMRMLRILAVGYIAMGVTQILSGVMRGAGDTMTPMWISIITTVIIRVPIAYGLEFLTRPEGGAMGSGTPDPLFISLLISWVMGAVITSIAYRMGRWKKKSIVAAAKKATPKTEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y674</accession>
    <name>R6Y674_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00345</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000421">
        <property type="protein sequence ID" value="CDD31438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31438">
        <property type="protein sequence ID" value="CDD31438"/>
        <property type="gene ID" value="BN815_00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="2">
        <location>
            <begin position="10"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="3">
        <location>
            <begin position="187"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="4">
        <location>
            <begin position="277"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="508" mass="54690" checksum="A6987A253D897749" modified="2013-07-24" version="1">MDYSKLKSGTDIRGVAVEGAGEPVTLTDEVVETIAAAFLVWAQRHLGKDASALKIAIGHDSRVSADRISAALQRVFVRYGVRALDCGLASTPSMFWATLDLPCDCSVQITASHHPYHRNGLKFFTPQGGLDAPDITEILALAQENARPEREAAGTVEPCGYMKDYAARLRRTIQEGVQAPDYDHPLAGLHIVVDAGNGAGGFYAWDVLEPLGADISGSQFLEPDGMFPNHIPNPENETAMASICQAVKASGADLGVIFDTDVDRGAAVDSQGEEINRNRLVALASAIALEGNPGGTVVTDSITSDGLKEYIETTLGGKHHRFKRGYKNVINEALRLNQEGVNCPLAIETSGHAAMRENHFLDDGAYLVTKILIKMASLRKEGKDLTSLLAPLREPVEAAEVRLPITEENFRACGEALIAALEAYAQEQNWAIAPDNREGIRVSFPKGEGEGWFLLRLSVHDPILPINLESDCAGGVAVIGKKLLQFLEAHKEGVDLSPLENFLNAPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6H6</accession>
    <name>R6Y6H6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01172</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000154">
        <property type="protein sequence ID" value="CDD29495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29495">
        <property type="protein sequence ID" value="CDD29495"/>
        <property type="gene ID" value="BN815_01172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="216"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="257"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="283"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="291"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="367" mass="36977" checksum="830120FD6A2B2431" modified="2013-07-24" version="1">MFIGPVTAGHVHKLLGAGVGGKAGAGALQGFVQNGCHLAALDALVRPEGAVGKAADPILGHGLVDKALGPVAGHVGKARAAGGEAVKALAHGGDELRPGDGVVGPEGAIFIAAENVQLHQGVHLGGVPGACADVGEAAVCHRRVRGQQVVEHLGHLGAGHGPVGVEACALFTGHVRFVAAHHQQGVGGEGLLLAVLHGDAALLPGALVLRNLRGGLLLAGRGLLAGGLLLGALPFPGLALLPGGLGTLRRGAFLRRLGGALLLGILPLRGLAGSAGGAFKGGLRRQGAGCRQGKQQRQQQRRNPSGSLFSHGKPPIHCKGSCPGLQNTRHHYTGKITNLQPFAPRIHNLPQNANKKGRQVLAGSLCF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6U6</accession>
    <name>R6Y6U6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000166">
        <property type="protein sequence ID" value="CDD29595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29595">
        <property type="protein sequence ID" value="CDD29595"/>
        <property type="gene ID" value="BN815_01199"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="8555" checksum="C08BA452201D91A0" modified="2013-07-24" version="1">MKCKQDLSIGPNLKRLRKAAGLTQAQAAAQLEVRGLPISAEILAKMEQGKYSIRISALKALKEIYKLDSYDDFFQGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y892</accession>
    <name>R6Y892_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Bifunctional ligase/repressor BirA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Biotin--[acetyl-CoA-carboxylase] ligase</fullName>
            <ecNumber evidence="1">6.3.4.15</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Biotin--protein ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Biotin-[acetyl-CoA carboxylase] synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">birA</name>
        <name evidence="3" type="ORF">BN815_01391</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + biotin + L-lysyl-[protein] = AMP + diphosphate + H(+) + N(6)-biotinyl-L-lysyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:11756"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.15"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the biotin--protein ligase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.15" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30140">
        <property type="protein sequence ID" value="CDD30140"/>
        <property type="gene ID" value="BN815_01391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004077">
        <property type="term" value="F:biotin-[acetyl-CoA-carboxylase] ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009249">
        <property type="term" value="P:protein lipoylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16442">
        <property type="entry name" value="BPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00978">
        <property type="entry name" value="Bifunct_BirA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030855">
        <property type="entry name" value="Bifunct_BirA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004408">
        <property type="entry name" value="Biotin_CoA_COase_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004143">
        <property type="entry name" value="BPL_LPL_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03099">
        <property type="entry name" value="BPL_LplA_LipB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00121">
        <property type="entry name" value="birA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51733">
        <property type="entry name" value="BPL_LPL_CATALYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0092">Biotin</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="BPL/LPL catalytic" evidence="2">
        <location>
            <begin position="65"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Biotin binding" evidence="1">
        <location>
            <begin position="91"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="186"/>
        </location>
        <ligand>
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="338" mass="36586" checksum="CA2AA7C9B6091A26" modified="2013-07-24" version="1">MNVADEILELLESSGAPLSGEEMARQLGVSRNAVWKAVQRLREDGYQIEAATNRGYQLVSADNALTPQSVRRLLEGPAQSCAIEVRDSVTSTNTVLKSIAEQGGAEGMALIAQQQTQGKGRLGRSFLSPKGTGLYLSVLLRPRFPAEEALSITTAAAVAVAEAIDQLTGQQAKIKWVNDVYLRGRKVCGILTEAAVDFESSGLHYAILGIGINLRAPEGGFPPEIAGVAGALFHDEVPPGARARLAAGILNRFFAYYSALPRRDYMEAYRQRSLLTGLEVTYTQGSQSGEGLVLGVDEEARLLLRLPDGQERAFSAGEVQIKKDFLARLRQEEEREPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8C1</accession>
    <name>R6Y8C1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HIGH nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01420</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30175">
        <property type="protein sequence ID" value="CDD30175"/>
        <property type="gene ID" value="BN815_01420"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008513">
        <property type="entry name" value="tRNA(Met)_cyd_acetate_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37825">
        <property type="entry name" value="PTHR37825"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05636">
        <property type="entry name" value="HIGH_NTase1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="248" mass="26681" checksum="11F28D61343B25F2" modified="2013-07-24" version="1">MGEDIAALLEKPNCILGVEYLKAILSQGGGLKAETFPRQGAGHDQPDHQGPLLSASHARALLCQGADLTGRLPQATLSLWEELRAQGRCPASLARLEVAVLCKLRSLTVEGFAQLPDISEGLENRLYQAARQAGSLEEFYALVKSKRYSHARVRRLAMSAFLGVARDTPCLPPYLRVLGMTPTGQAILRQAQPSLPLALRAADFQRLGGQALSLFQLEAHAGDLYGLALPSPAPCGRDYTQGLIKVGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8H5</accession>
    <name>R6Y8H5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00655</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27564">
        <property type="protein sequence ID" value="CDD27564"/>
        <property type="gene ID" value="BN815_00655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425330" evidence="2">
        <location>
            <begin position="20"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="23"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="446" mass="49764" checksum="060FED99408190AA" modified="2013-07-24" version="1">MKKLALLLTVCLLAWSAFAGCQTQDTPQPPEPSGSEASASSTAQEGDPVVLCIEDSFEQDAYELENYLKATGVETEYEFLVLPNNTEDRETELTRLRTEIMAGEGPDAFILNATIPGYVTDLSTMEPTEALFPNVEKSMYSHLFLDVEEMVQNSETIDLANCNPTVMDVGVTSGGRFLLPLTYTFSVHIFDTAHLNDPNFTFTSLEELLQSDEESLKGTLAWGSFRLFPDCLDPLVDYEGQNLLVTREAMQQAVEQADALVDLQDESYSESPLVYQSGTGISMYSLLGLSSEDTEYTFFPVPNRNGGVTAAVTFYAAINANAAYPQEAFDFIELLYSEELFTEQGFEVNGFHYGTTFSYGNHGGLSVSIPVKDEIFFQYLESYDILPGTMVSLRKAVERIDSAKVYSDLDLAIYQMYNTWRYDHLEETLEELVDRTVSTMEMTLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8P7</accession>
    <name>R6Y8P7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01539</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30305">
        <property type="protein sequence ID" value="CDD30305"/>
        <property type="gene ID" value="BN815_01539"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="101" mass="11038" checksum="080370643B17BAD4" modified="2013-07-24" version="1">MQLHACPYPGTCRYYGEEKGAPRCRRGICPFRIHLRRMVAGEMQRLAGKGDLTPAQRRELEVLKKEYARLLGGEAHGTEAPQTAPQPPRAGGGCAPVPGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8T6</accession>
    <name>R6Y8T6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fn3_like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01574</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30340">
        <property type="protein sequence ID" value="CDD30340"/>
        <property type="gene ID" value="BN815_01574"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1700">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026891">
        <property type="entry name" value="Fn3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002772">
        <property type="entry name" value="Glyco_hydro_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036881">
        <property type="entry name" value="Glyco_hydro_3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001764">
        <property type="entry name" value="Glyco_hydro_3_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036962">
        <property type="entry name" value="Glyco_hydro_3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14310">
        <property type="entry name" value="Fn3-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00933">
        <property type="entry name" value="Glyco_hydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01915">
        <property type="entry name" value="Glyco_hydro_3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00133">
        <property type="entry name" value="GLHYDRLASE3"/>
    </dbReference>
    <dbReference type="SMART" id="SM01217">
        <property type="entry name" value="Fn3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52279">
        <property type="entry name" value="SSF52279"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fn3_like" evidence="2">
        <location>
            <begin position="313"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="813" mass="87960" checksum="F0C6C14CCEC817FE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y956</accession>
    <name>R6Y956_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000246">
        <property type="protein sequence ID" value="CDD30445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30445">
        <property type="protein sequence ID" value="CDD30445"/>
        <property type="gene ID" value="BN815_00135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12713" checksum="9E442BF69BA36875" modified="2013-07-24" version="1">MMESPTSCTMEKNSWRGMSVRRPGMLSSLSTVPPVWPRPRPLILAIFTPQAAAMGPKIKEVLSPTPPVECLSTFTPGMEDKSTMSPERAISKVRAAVSRWVMPRKKMAISKALAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y974</accession>
    <name>R6Y974_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">CBS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00722</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000065">
        <property type="protein sequence ID" value="CDD27844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27844">
        <property type="protein sequence ID" value="CDD27844"/>
        <property type="gene ID" value="BN815_00722"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="104"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="244" mass="28114" checksum="C9C5DBC07CE76CAC" modified="2013-07-24" version="1">MEWEARQSRIDEFLDLYKQLEDVLEIKYRNARRHYSSVVFEFIKDDESAPVRDKLEICREIRNLLTHSANLEGEPVVEPSAPVVEAMGEVLDFARRPPLAMEFATKGDQVMRAHMHQRVLRLMEVMEKNGYSHIPVMEQGEFRGVFSVGTVFQYILRSGGKGIQPDTTVADLAGHIGFSAHMENYEFVPKNATYISVRRIFERVRGKNQRVSVIFITEHGKVGEPLLGMLTPWDVMGPFYPRKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9J8</accession>
    <name>R6Y9J8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase</fullName>
            <ecNumber evidence="3">4.2.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01778</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.-.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30565">
        <property type="protein sequence ID" value="CDD30565"/>
        <property type="gene ID" value="BN815_01778"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00002">
        <property type="entry name" value="YbaK_deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004369">
        <property type="entry name" value="Prolyl-tRNA_editing_YbaK/EbsC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006181">
        <property type="entry name" value="EbsC_YbaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00011">
        <property type="entry name" value="YbaK_EbsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="4">
        <location>
            <begin position="35"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009798"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR006181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="161" mass="17354" checksum="F746F00F2F34DE8F" modified="2013-07-24" version="1">MAKKSEKTNALRLLDKLKIPYEAYSYPCEEFTGGEDVARQLGLDPADVCKTLVTVGKSGGHFVFVLPVTGELDRKKAAALVGEKSLEMLHVKDLLAVTGYVRGGCTALGMKKQFPTVVEQSLREKPFIYVSGGKRGLQLKLAPGDLVQAAGAMWGDVLAKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Z4</accession>
    <name>R6Y9Z4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01935</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30730">
        <property type="protein sequence ID" value="CDD30730"/>
        <property type="gene ID" value="BN815_01935"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="27964" checksum="566C688760A38873" modified="2013-07-24" version="1">MVTAVITGASSGLGKEYINAIIAEYPTVDVFWLVARRKELLKEIADEHPDKTIAAISLDLSQEESLEIFEKLLKENEPEIKVLVNNAGFGKCGDFFTSNRASQMGMVDVNCRALTAITRLCLPYMLDDSLVINVASIAAFAPTPRMSVYSATKAYVLALSKALHDELRPRGIKVLAVCPGPMDTDFWNVAGVPEGKSRLIDKLPREDPREVAEKSLRAAKRGKMVYAKSAVYKFYHVLSKVLPHGLLMEFTEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAB2</accession>
    <name>R6YAB2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Dolichyl-phosphate-mannose--protein mannosyltransferase</fullName>
            <ecNumber evidence="6 12">2.4.1.109</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_00168</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Transfers mannose from Dol-P-mannose to Ser or Thr residues on proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12">
            <text>a dolichyl beta-D-mannosyl phosphate + L-seryl-[protein] = 3-O-(alpha-D-mannosyl)-L-seryl-[protein] + a dolichyl phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17377"/>
            <dbReference type="Rhea" id="RHEA-COMP:9517"/>
            <dbReference type="Rhea" id="RHEA-COMP:9527"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:13546"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57683"/>
            <dbReference type="ChEBI" id="CHEBI:58211"/>
            <dbReference type="ChEBI" id="CHEBI:137321"/>
            <dbReference type="EC" id="2.4.1.109"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>a dolichyl beta-D-mannosyl phosphate + L-threonyl-[protein] = 3-O-(alpha-D-mannosyl)-L-threonyl-[protein] + a dolichyl phosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:53396"/>
            <dbReference type="Rhea" id="RHEA-COMP:9517"/>
            <dbReference type="Rhea" id="RHEA-COMP:9527"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:13547"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57683"/>
            <dbReference type="ChEBI" id="CHEBI:58211"/>
            <dbReference type="ChEBI" id="CHEBI:137323"/>
            <dbReference type="EC" id="2.4.1.109"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Protein modification; protein glycosylation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the glycosyltransferase 39 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.109" evidence="6 12"/>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30865">
        <property type="protein sequence ID" value="CDD30865"/>
        <property type="gene ID" value="BN815_00168"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00378"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004169">
        <property type="term" value="F:dolichyl-phosphate-mannose-protein mannosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027005">
        <property type="entry name" value="GlyclTrfase_39-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003342">
        <property type="entry name" value="Glyco_trans_39/83"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032421">
        <property type="entry name" value="PMT_4TMC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10050">
        <property type="entry name" value="PTHR10050"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02366">
        <property type="entry name" value="PMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16192">
        <property type="entry name" value="PMT_4TMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="114"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="266"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="290"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="313"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="356"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="PMT" evidence="13">
        <location>
            <begin position="26"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_4TMC" evidence="14">
        <location>
            <begin position="208"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU367007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF16192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="399" mass="45322" checksum="2E91A5E989963C68" modified="2013-07-24" version="1">MGLEPYENTHPTLGKLIISLGIRLFGMNPFGWRFMGALFGVLMLPVLYHLLKQLFGRTRLAFAGTVLFAFDFMHFTQTRIATIDTYAVFFLLLMYDAMVVFLKGDVGRDSWKRLLPPLLACGVFTGLGIAAKWTAAYGALGLAGLFFGKLAFTLWEARRRGEDVRPLARKCLQLCAWCCLFFIVIPFAIYFAAFLPITTLSHNGGKLWWAFWNYQTTMFNYHAHLEATHSFASPWYEWPFDIRPIWYFAQDNWNGYSTISSFGNPLLWWGCLPALAAAAYLWWKERPRWAAVVLAGFGSVYLPWVLVPRLTFIYHYFTAVPFLVVALCGVFSLLYEKGPFARRLTFPGGLECQGATLLLAAFAAGCLLLFAVYFPVLSGAPTTREYADALELFDSWYFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB14</accession>
    <name>R6YB14_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02228</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31075">
        <property type="protein sequence ID" value="CDD31075"/>
        <property type="gene ID" value="BN815_02228"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="128" mass="13805" checksum="55E06AA5A2EB463B" modified="2013-07-24" version="1">MKDYILGVDLGGTNIKAAAYRLGSYEKVGEKRLPTQVEGGWEHVLGRVLAALEELLRHTPRERVLCVGMGVPGLPGGGEPCPGHLPGGVRNRHRPAGGRRRDAGGCRLRRPPHGGGRPDVSRKKSFPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB28</accession>
    <name>R6YB28_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integral membrane protein DUF6</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02248</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EamA transporter family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000375">
        <property type="protein sequence ID" value="CDD31095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31095">
        <property type="protein sequence ID" value="CDD31095"/>
        <property type="gene ID" value="BN815_02248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="113"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="137"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="254"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="3">
        <location>
            <begin position="9"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="3">
        <location>
            <begin position="163"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="32196" checksum="79BAED84CB478FAD" modified="2013-07-24" version="1">MERNRTQLRGAALLMLTALIWGTAFVAQSVGMDHLGPCAFTAVRNYIGCVALLPVIAFASRLRKGKPEDDGEQVPPAKARKRLALWGAACGLLLGSATLLQQAGMQTASPGKAGFLTALYIVIVPVLGVFLGRRPGLKVWAGVVLALVGAYLLSVKGGEGIATGDLLVIASAVVFSLHILVVDFVPAGVDGVKLSCVQFLVAGLLATVLALLFESFTFSDILAAWVPLLYTGIISSGVGYTLQILGQRTVNPTVASLILSLESVFAVLAGWVLLGQPLSPRELVGCALVFAAVVLAQLPQKKPKVQSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBC7</accession>
    <name>R6YBC7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02369</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31225">
        <property type="protein sequence ID" value="CDD31225"/>
        <property type="gene ID" value="BN815_02369"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="14"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="33706" checksum="3A946C2FC123155F" modified="2013-07-24" version="1">MSRQLLIPVEEAGQRVDKLLSAALEDMTRSAVQNLIENGCVTCGGKALSKSAKLKPGDQILVELPEVRPLEVRPQPIPLEVVYEDGDLLVVNKPKGMVVHPAPGHEEGTLVNALLAHCGDSLSGINGVARPGIVHRIDKDTSGLLIVAKNDFSHTRLAEQIQAHTFTREYSAVVYGSFKEDSGTVDQPLGRHPTDRKKIAVLPNSPSARRAVTHFWVVKRFQGFTQLRLRLETGRTHQIRVHMAHLGHPLAGDDLYGGSRYRLCRQALHCGELFLVCKPLGAGLRLAAPFPEDMAAAFPWILPFSPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBM0</accession>
    <name>R6YBM0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00260</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VirD4/TraG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000402">
        <property type="protein sequence ID" value="CDD31325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31325">
        <property type="protein sequence ID" value="CDD31325"/>
        <property type="gene ID" value="BN815_00260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003688">
        <property type="entry name" value="TraG/VirD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02534">
        <property type="entry name" value="T4SS-DNA_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="97"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="117"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16470" checksum="5F4C72344DC69F79" modified="2013-07-24" version="1">MSKSLGSRTVQSGSISKGKDNTSQSLQMMERPLMTPDELKSMPKGQFIVMKTGAHPMKVKLKLFFQWGISFGEPYTVPDKGNRPVAYAGKEALVQAIQEKYPPQEEPQQPKAKEQPPQPGPEDKKLHASSPGRRQRKPGKEREDDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBV1</accession>
    <name>R6YBV1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphate ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00331</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31400">
        <property type="protein sequence ID" value="CDD31400"/>
        <property type="gene ID" value="BN815_00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015850">
        <property type="entry name" value="ABC_transpr_PstB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423:SF3">
        <property type="entry name" value="PTHR43423:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="8"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="253" mass="28140" checksum="7E2D644892462888" modified="2013-07-24" version="1">MVSLMDKITVKNLDLYYGDFKALKTVNMNIAPNEVTAFIGPSGCGKSTLLKSLNRMNDLVEGCKITGEILLDGEDIYGNIDVNQLRKRVGMVFQKPNPFPMSVYDNIAYGPRTHGIRSKVKLDEIVEKSLRGAAIWDELKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTSKIEDLAMELKSDYTIVIVTHNMQQAARISDKTAFFLLGELVEFGPTEQVFSMPKDKRTEDYITGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCW0</accession>
    <name>R6YCW0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Chaperone protein DnaK</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00457</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000446">
        <property type="protein sequence ID" value="CDD31740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31740">
        <property type="protein sequence ID" value="CDD31740"/>
        <property type="gene ID" value="BN815_00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="SSF100934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="96"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="96"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15290" checksum="A2DEF8B128D4F978" modified="2013-07-24" version="1">MSKEDIDRAVKDAEQFAEQDKKRREEVDTKNNAENLCYTAEKLVSDSGDKMQDSDKNEINTKAAALRETLKNGTVDQIKAGMDDLQKAVYAASEKLYQQQAPQGGQPGQQPPYQGGNPGDNGGNNGGDGNVYDADYKEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEI6</accession>
    <name>R6YEI6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">30S ribosomal protein S20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpsT</name>
        <name evidence="8" type="ORF">BN815_01251</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds directly to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bS20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000173">
        <property type="protein sequence ID" value="CDD29724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29724">
        <property type="protein sequence ID" value="CDD29724"/>
        <property type="gene ID" value="BN815_01251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00500">
        <property type="entry name" value="Ribosomal_S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002583">
        <property type="entry name" value="Ribosomal_S20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036510">
        <property type="entry name" value="Ribosomal_S20_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33398">
        <property type="entry name" value="PTHR33398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01649">
        <property type="entry name" value="Ribosomal_S20p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46992">
        <property type="entry name" value="SSF46992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00029">
        <property type="entry name" value="S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00015666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="86" mass="9066" checksum="72EF481E360DF386" modified="2013-07-24" version="1">MPNIKSAKKRVKVIATKTMQNKAINSQLKTEIKKANAALESGAENKAAAVRVAIKKIDQAAAKGILPKNTAARKKSALAKKLNASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF12</accession>
    <name>R6YF12_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH-quinone oxidoreductase E subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01315</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29939">
        <property type="protein sequence ID" value="CDD29939"/>
        <property type="gene ID" value="BN815_01315"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028431">
        <property type="entry name" value="NADP_DH_HndA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43342:SF2">
        <property type="entry name" value="PTHR43342:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000216">
        <property type="entry name" value="NADH_DH_24kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01958">
        <property type="entry name" value="nuoE_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000216-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="17954" checksum="8CFB81A78BC9926B" modified="2013-07-24" version="1">MQKRISNLPFHDTPEQAQKLDAVIESLKGTQGAVMPALHQAQDIYGYLPIEVQEKIAKGLGVSLEEVYGVSTFYSQFALTPKGRNHISVCLGTACYVKGADKVLERITQKLGIQPEECTEDGAFSLTACRCIGACGLAPVMTVNDEVYGRLVPEDVDSILAQYMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFQ3</accession>
    <name>R6YFQ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">His Kinase A (Phosphoacceptor) domain./Histidine kinase-DNA gyrase B-and HSP90-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01404</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30159">
        <property type="protein sequence ID" value="CDD30159"/>
        <property type="gene ID" value="BN815_01404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="32"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="210" mass="22938" checksum="B03FAF4E3D9453A3" modified="2013-07-24" version="1">MKLLYAEDEAAMSEAVVDMELYLGESKWSRNIKEQTRRLSGLMQDLLTLARMDEGAAPAQKAALSLSGLAEQALEPFLQPMEAQGITLERDIQPGVSLTADPAQLEQLLSLLLDNAVKYTGPGGRICLSVKQEGKRARLCLENTCPQLPTVPPEKLFDRFYRGDAARTQKEGGYGIGLAVAHSLAQANQGSLHAQYLPPQAIRFVAQFPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFR0</accession>
    <name>R6YFR0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L27</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpmA</name>
        <name evidence="6" type="ORF">BN815_01414</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the bacterial ribosomal protein bL27 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30169">
        <property type="protein sequence ID" value="CDD30169"/>
        <property type="gene ID" value="BN815_01414"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00539">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001684">
        <property type="entry name" value="Ribosomal_L27"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15893">
        <property type="entry name" value="PTHR15893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01016">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00063">
        <property type="entry name" value="RIBOSOMALL27"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00062">
        <property type="entry name" value="L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 6" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10072" checksum="46160B1C35373701" modified="2013-07-24" version="1">MLKINIQLFAHKKGMGSTKNGRDSESKRLGVKRADGQFVLAGNILVKQRGTKIHPGVNVGRGSDDTLFALVDGKVKFERMGADRKKVSVYAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFS3</accession>
    <name>R6YFS3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase group 2 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01427</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000203">
        <property type="protein sequence ID" value="CDD30184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30184">
        <property type="protein sequence ID" value="CDD30184"/>
        <property type="gene ID" value="BN815_01427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="230"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="361" mass="40862" checksum="4CE2EC8BFB547309" modified="2013-07-24" version="1">MVTISLCMIVKDEEALLPRCLESIQGLVEEVIVVDTGSSDRTVELAQQAGAQVYHFPWVGDFSQARNFSFSKATQQYCLWMDADDVLDAQYRPGFLQLKAALPPQTDVVMLPYHTAFDQAGAPTFTYYRERLIRRLAGLRWSGAVHEAIPPVGNVVYWDKAAISHRKPGPGDPDRNLGIYQGLLAQGKTLSPRERFYYARELASHGREEEAAAQWEEYLASGEGWVENQREACRDLSACYLRQGKGEEAFRALAKALRLGPPRAELCCDFGAFFLERGDYPAAAFWYEAALTRPREDRSGAFVSPDCYGYLPCIQLCVCYYRMGDVERSREYNRRAGQYKPQDPAFLYNQRFFQGKGEALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFW3</accession>
    <name>R6YFW3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA polymerase sigma factor SigS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01472</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-S contributes to the protection against external stress, thus playing a role in cellular fitness and survival.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30229">
        <property type="protein sequence ID" value="CDD30229"/>
        <property type="gene ID" value="BN815_01472"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="4">
        <location>
            <begin position="28"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024701"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="186" mass="20191" checksum="A26CF05608E14491" modified="2013-07-24" version="1">MDYQACGDARLAALVRAGQGEAFAELSARYLGLIRAKAKLFEGASAPEKEDLWQEGLLGLYAAAISYQPGRGASFPTYAGVCVYNQMASAVRRHGSSGNRPLNESVPLEDAGEAAVEAGPEALLELREEFGALCRQMDVSLSPLERRVLALYLSGYRRGEGAKRAGLPLRSYDNALHRVRSKLKRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG16</accession>
    <name>R6YG16_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Aspartokinase</fullName>
            <ecNumber evidence="15">2.7.2.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BN815_01528</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the phosphorylation of the beta-carboxyl group of aspartic acid with ATP to yield 4-phospho-L-aspartate, which is involved in the branched biosynthetic pathway leading to the biosynthesis of amino acids threonine, isoleucine and methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>ATP + L-aspartate = 4-phospho-L-aspartate + ADP</text>
            <dbReference type="Rhea" id="RHEA:23776"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 16">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 16">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 1/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 16">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 1/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 15">Belongs to the aspartokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.4" evidence="15"/>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30294">
        <property type="protein sequence ID" value="CDD30294"/>
        <property type="gene ID" value="BN815_01528"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00015"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00461"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00462"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004072">
        <property type="term" value="F:aspartate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04261">
        <property type="entry name" value="AAK_AKii-LysC-BS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041740">
        <property type="entry name" value="AKii-LysC-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005260">
        <property type="entry name" value="Asp_kin_monofn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001341">
        <property type="entry name" value="Asp_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018042">
        <property type="entry name" value="Aspartate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027795">
        <property type="entry name" value="CASTOR_ACT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13840">
        <property type="entry name" value="ACT_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000726">
        <property type="entry name" value="Asp_kin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00656">
        <property type="entry name" value="asp_kin_monofn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00657">
        <property type="entry name" value="asp_kinases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00324">
        <property type="entry name" value="ASPARTOKINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 16" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10 15 18" id="KW-0418">Kinase</keyword>
    <keyword evidence="13" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="9 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="17">
        <location>
            <begin position="263"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="17">
        <location>
            <begin position="343"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="7"/>
            <end position="10"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="74"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="173"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000726-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD30294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="403" mass="43655" checksum="031749080D92AECA" modified="2013-07-24" version="1">MALIVQKFGGSSVKDAERINNVADIVTSTYKEGNDVVVVVSAQGDTTDDLIAKAAEINEKPSKREMDMLLSSGEQISAALLAMAIERMGYPVVSLLGWQAGFDTSSDYGNARIKRVNAQRIEQELDKRRIVVVTGFQGVNRYGDMTTLGRGGSDTSAVAIAAAMHADLCQIFTDVDGVYTADPRKIPGAIKLSSISYDEMLELATLGAQVLHNRSVEMAKKYNIELEVLSSLTRRKGTIVKEESNVEKMLISGVAKDDNISRISIIGVPDKPGLAFKIFSKLASKGINVDIILQSIGRNGTKDISFTVDKNKMDDAIALLQQNTEKWGASNIVSDDNVTKVSIVGAGMETHPGVAAEMFEALFSRSVNIQMISTSEIKISVLINKADGDRAVEAIHEKFFENQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG63</accession>
    <name>R6YG63_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA_edit domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01578</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000222">
        <property type="protein sequence ID" value="CDD30344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30344">
        <property type="protein sequence ID" value="CDD30344"/>
        <property type="gene ID" value="BN815_01578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="24"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="16575" checksum="24198FF0EBD406C8" modified="2013-07-24" version="1">MSVEAVKEYLKPFGLSDQVLELAESSATVELAAHALGTQPARIAKTLSFLVGEEAILIVAAGDAKIDNAKYKAQFHQKAKMLTPQQVLELVGHPVGGVCPFAIREGVAVYLDESLKRFETVFPACGSGNSAIQLTIPQLEETSRAAGWVDVCKGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGI6</accession>
    <name>R6YGI6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti-sigma F factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000260">
        <property type="protein sequence ID" value="CDD30484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30484">
        <property type="protein sequence ID" value="CDD30484"/>
        <property type="gene ID" value="BN815_01700"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HATPase_c" evidence="1">
        <location>
            <begin position="2"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7091" checksum="F5A7A219739D1B9C" modified="2013-07-24" version="1">MRVRDKGCGIPDIKKAMEPLYTTGGEERAGLGFAVMQSFCDSVRVTSTPGRGTSVTLTKYFDTKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGK8</accession>
    <name>R6YGK8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">GTPase Era</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">era</name>
        <name evidence="12" type="ORF">BN815_00044</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27701">
        <property type="protein sequence ID" value="CDD27701"/>
        <property type="gene ID" value="BN815_00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04163">
        <property type="entry name" value="Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00367">
        <property type="entry name" value="GTPase_Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030388">
        <property type="entry name" value="G_ERA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00436">
        <property type="entry name" value="era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51713">
        <property type="entry name" value="G_ERA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Era-type G" evidence="11">
        <location>
            <begin position="8"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="10">
        <location>
            <begin position="199"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="8">
        <location>
            <begin position="16"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="8">
        <location>
            <begin position="42"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="8">
        <location>
            <begin position="63"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="8">
        <location>
            <begin position="125"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="8">
        <location>
            <begin position="155"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="16"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="63"/>
            <end position="67"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="125"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD27701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="304" mass="33698" checksum="D82B6E20C06E0175" modified="2013-07-24" version="1">MDTMPQERSAFIAIVGRPNVGKSSVLNRLVGQKIAIVSRKPQTTRTRIMGVLTQGEDQLVFLDTPGLIKPKNSLGDYMVKSVTRTVDGVDACLLVTEAGAPLSKADQELIRRFQGGKVPAVLAINKTDLLEDKSPIMEQIAQYAGLYGFQAVVPVSAKDGSGMEDLLDELKKLCLPGGHLFPEDTLTDQPERVIASEIVREKVLRLLDKEVPHGVAAVTERMKDREGILDIDVTIYCEKPGHKGILIGKGGSMLKKIGTKAREDMERFFDCKVNLQLWVKVKEDWRQRPETLQSLGFSERDLEM</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHR6</accession>
    <name>R6YHR6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000348">
        <property type="protein sequence ID" value="CDD30944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30944">
        <property type="protein sequence ID" value="CDD30944"/>
        <property type="gene ID" value="BN815_02103"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="473"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="533"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="599"/>
            <end position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="659" mass="71366" checksum="D3E86B5E011F4A15" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHW7</accession>
    <name>R6YHW7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpB</name>
        <name evidence="12" type="ORF">BN815_02153</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
            <topology evidence="11">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the ATPase A chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30994">
        <property type="protein sequence ID" value="CDD30994"/>
        <property type="gene ID" value="BN815_02153"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045082">
        <property type="entry name" value="ATP_syn_F0_a_bact/chloroplast"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42823">
        <property type="entry name" value="PTHR42823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00123">
        <property type="entry name" value="ATPASEA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="86"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="227" mass="25020" checksum="1B8027A3292B659C" modified="2013-07-24" version="1">MDGIRDQLMEELNNPTAFTIPLFGGIPVGQSVVITWVVMAVLVLLSILCTRHLKKVPGKAQLVAEMYVGFMNKFAKKYMGEHWKSFAPYFGTIGLYLGLANMIGLFGITPPTKDLNVTAGLALMSCGLIYGSSFRYKGLKGGLHKFLEPTPLLLPINLMEVIIRPLSLCMRLFGNVLGAFIIMELIKLAIPVGLPLAASMYFDVFDGIIQTVVFVFLTAMFTQETME</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHZ6</accession>
    <name>R6YHZ6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Stage 0 sporulation protein A homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00779</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 6">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="5 6">Binds 1 Ca(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28191">
        <property type="protein sequence ID" value="CDD28191"/>
        <property type="gene ID" value="BN815_00779"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051606">
        <property type="term" value="P:detection of stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042173">
        <property type="term" value="P:regulation of sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014879">
        <property type="entry name" value="Spo0A_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012052">
        <property type="entry name" value="Spore_0_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08769">
        <property type="entry name" value="Spo0A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002937">
        <property type="entry name" value="Res_reg_Spo0A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02875">
        <property type="entry name" value="spore_0_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0010">Activator</keyword>
    <keyword evidence="2 5 6" id="KW-0106">Calcium</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0678">Repressor</keyword>
    <keyword evidence="3 5" id="KW-0749">Sporulation</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="5" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="7">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR002937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR002937-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="28537" checksum="6390F7A4162A644A" modified="2013-07-24" version="1">MEKESKIMICSDDGEWGREPTQKLSQRGVRALFLKRDSSLLLSKIREERPQLVIMDFLMPGLDAIGVIHAVAQDANVENPLYIVTSSYTNPMMEREIAAAGVAYFALSPYDKNEMADRVLSLLSMKGKHFDSEPVSASLRMQVTEILHQIGVPAHIKGYHYLRDSILMAVEDPEIINAVTKQLYPSVAKRYNTTSSRVERAIRHAIEVAWDRGDVDVLNSYFGYTIHNTRGKPTNSEFIAMIADKLCLQMATAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI11</accession>
    <name>R6YI11_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine pyrophosphate enzyme C-terminal TPP binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28206">
        <property type="protein sequence ID" value="CDD28206"/>
        <property type="gene ID" value="BN815_00785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TPP_enzyme_C" evidence="1">
        <location>
            <begin position="50"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="250" mass="26886" checksum="8F16484425B48B8C" modified="2013-07-24" version="1">MAIVFQKPSTLTDAPLHYCPGCTHGIVHRLVAQALEELGVEGKTVGVASVGCSVMCYDYFTCDMVQAPHGRAQAVATGLKRARPDNVIFTYQGDGDLAAIGTAETVHAATRGENITVIFINNAIYGMTGGQMAPTSLPGQVTQTTPYGRDTNTAGYPVKVCEMLSTLDGVAFAQRVTVDCVKNVNIARKAIKKAFQNQIEGKGYSIVEVLSTCPTNWGMSPVEALKWLNDNMIPYYPLGVYKDVEEGVKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI14</accession>
    <name>R6YI14_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease R</fullName>
            <shortName evidence="6">RNase R</shortName>
            <ecNumber evidence="6">3.1.13.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnr</name>
        <name evidence="9" type="ORF">BN815_02188</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.13.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RNR ribonuclease family. RNase R subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.13.1" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000362">
        <property type="protein sequence ID" value="CDD31034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31034">
        <property type="protein sequence ID" value="CDD31034"/>
        <property type="gene ID" value="BN815_02188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008859">
        <property type="term" value="F:exoribonuclease II activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01895">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013223">
        <property type="entry name" value="RNase_B_OB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022966">
        <property type="entry name" value="RNase_II/R_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004476">
        <property type="entry name" value="RNase_II/RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011805">
        <property type="entry name" value="RNase_R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08206">
        <property type="entry name" value="OB_RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00358">
        <property type="entry name" value="3_prime_RNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02063">
        <property type="entry name" value="RNase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01175">
        <property type="entry name" value="RIBONUCLEASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="659"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="10"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="740" mass="81418" checksum="7A1D665A2F61A022" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI24</accession>
    <name>R6YI24_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02198</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31044">
        <property type="protein sequence ID" value="CDD31044"/>
        <property type="gene ID" value="BN815_02198"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="213"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r2" evidence="3">
        <location>
            <begin position="24"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="4">
        <location>
            <begin position="114"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27029" checksum="ABED99723DB50B52" modified="2013-07-24" version="1">MDNQRLSTLLAGTAQRDASAFSQLYQEFSPTVYGIALSVVKEPHTAADATQEVFLRLWTLPPARFPRENPGAWLYTVTRRQALEHLQRQRPLSLEEAPPLPELSSPLENALDWQSFQELLAPLDELSRQIVTLKLAAGYTHREIAALLHQNPATVRWKYAKAIHGLRLFWADLLGALLLGFLGLRALLPQAPTAGAPSEGGPGGFTPPAPPPWLPGALLLAAAAVLLAGAVYFGWQRWKRPRQKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI82</accession>
    <name>R6YI82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA threonylcarbamoyl adenosine modification protein YeaZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02257</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31104">
        <property type="protein sequence ID" value="CDD31104"/>
        <property type="gene ID" value="BN815_02257"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022496">
        <property type="entry name" value="T6A_TsaB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF11">
        <property type="entry name" value="PTHR11735:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03725">
        <property type="entry name" value="T6A_YeaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TsaD" evidence="1">
        <location>
            <begin position="32"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="236" mass="24909" checksum="E9A9D89D551A7A91" modified="2013-07-24" version="1">MLTLGIDSSAVAASAALVEDGKLLGEFYCNTKQVHSQTLLPMVEGLLQTVGRSCGGLDAIAVSHGPGSFTGVRIGVSCVKGIALPKNIPCVGVSTLEAIAYSGIPYEDAILCAVMDARCGQVYNALFRSEGGALHRLTEDRALPIKELEGELWPHGREVLLLGDGAALCHQAFSMWGARLAPEGVRYQRASSVALLGEQAAKEGKTVPAGELAPVYLRLPQAERELKKRQAEQANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIE8</accession>
    <name>R6YIE8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31174">
        <property type="protein sequence ID" value="CDD31174"/>
        <property type="gene ID" value="BN815_02318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021377">
        <property type="entry name" value="DUF3006"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11213">
        <property type="entry name" value="DUF3006"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8377" checksum="B7200736A1E5C3F3" modified="2013-07-24" version="1">MESMKQLVIDRLDGKYAICTDSDQKFYAIELPEVPQGAKAGSVLRITDEGELQLDVEATQRRQQGPQGKRGGQKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIW9</accession>
    <name>R6YIW9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Flavoprotein family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00301</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31369">
        <property type="protein sequence ID" value="CDD31369"/>
        <property type="gene ID" value="BN815_00301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="44712" checksum="F368A8C30DD4876F" modified="2013-07-24" version="1">MNTYDVLVVGGGAAGLMAAGAALERGLSVCLFDKNRQLGRKVRITGKGRCNVTNNCPAEEVVAACPRGGKFLYGALSAFSPQDTMAFFEGLGVPLKTERGRRVFPVSDNAHDIAGALERYAAGATVIREAVTAVLVEKGRAVGVRTAAGTYRGGSVILCCGGASYPGTGSNGDGYKLAAAVGHTIVTPTPSLVPLVERGPWCRQLMGLSLRNCGVKVTQRGKKKPVYEDFGELLFTHFGLSGPTILSASAHLHPMEPGKYTIHIDLKPALSEQQLDARLLRELEAHKNKIFANSLEELLPQKLIPVAVERSGIPGETRCHSVTKEQRRALLGLLKDFPVEVEGFRPLAEAIVTSGGVSLREISPKTMESKLVGGLYVAGELLDADAYTGGYNLQIAFATGKLAGSSAQCLGSQSAGVAPRAIRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJQ1</accession>
    <name>R6YJQ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00427</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31639">
        <property type="protein sequence ID" value="CDD31639"/>
        <property type="gene ID" value="BN815_00427"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437570" evidence="2">
        <location>
            <begin position="25"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12097" checksum="5AA0340174DEE44B" modified="2013-07-24" version="1">MRKKTLGNFLSFLLVLVCTVTAVAALHLVTRAQGPSLPAVEEALPAAQLSASVPPQLVASPLVCVGAFLGMLAIVAIGLAVYRREKRCGKRARQGRRSYIPRADMAFPGRNRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK68</accession>
    <name>R6YK68_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01008</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000110">
        <property type="protein sequence ID" value="CDD28936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28936">
        <property type="protein sequence ID" value="CDD28936"/>
        <property type="gene ID" value="BN815_01008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="8330" checksum="308FA89B3650B61B" modified="2013-07-24" version="1">MDYTAWSMAYWEEASRVQERMAQVRQEGLPPSPQEEALQRRRLSILYEMYLDCVHTAKDLGRRAQRQEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKP4</accession>
    <name>R6YKP4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29131">
        <property type="protein sequence ID" value="CDD29131"/>
        <property type="gene ID" value="BN815_01063"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="20284" checksum="A233F054E6EBD983" modified="2013-07-24" version="1">MPSVWPPPVNLPSQTRWMNTKDWFHTRKKYTVPLVLLAMLLVMAFLTIGVPYLLSIQQGDVSQAQVSVSLGGGFPQEHQVQAGMEQIKDTFQANFHNCQLLELHFDAVYSGGLQEELQERYGTEETKGLFVVTSTVVTGRLSPPEGMSPATTYDDVQWILADTGNGLITVLDWGRFLVDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKW3</accession>
    <name>R6YKW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="13">CBS domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_01097</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0053 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29226">
        <property type="protein sequence ID" value="CDD29226"/>
        <property type="gene ID" value="BN815_01097"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 9 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="94"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="CNNM transmembrane" evidence="12">
        <location>
            <begin position="1"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="220"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="11">
        <location>
            <begin position="284"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD29226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="439" mass="49041" checksum="7A1BD11CA74D07E6" modified="2013-07-24" version="1">MEILLQIILILVNAFFAGTEMAVVSLNATKLRKMQEEGDKIAGKLLSMVEDSSAFLSTIQVAITLAGYLGAAFAGENFAPVLSSWLYNDLGFQLIPLTALNSIAIIIITIILSYFTLVFGELVPKRIALQKSYEWAKMACGVIRGMAFVLRPVIWLLSVSVNGVLRLLHMKVEAEEENVTEDEIRMMVDLGGEKGAIDEDEQEWIQNVFDFGDSSVRESMTPRSDMDALDIESTDEEILEMIQETGRSRFPVYEESVDTILGILNVRDYLLDRNAGKNTALKDLLRPAYFVPETMKADNLFKEMQKEKVHIAVVVDEYGGTEGIITMEDLLEEIVGNIYDEFDKAEQPEIVPLGENQWRIAGSTPISTLVDDLELPLPESDDYDTLGGLIVTRLNAIPKDGEQFDMEIDGVALHIEKIEDHRIESVVATLLPKEEPEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLT2</accession>
    <name>R6YLT2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01175</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29501">
        <property type="protein sequence ID" value="CDD29501"/>
        <property type="gene ID" value="BN815_01175"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7132" checksum="89C1102A11F2F361" modified="2013-07-24" version="1">MGKNLKMKAARAALGLTQQDLAEAVGVTRQTIVAIERGDYNPTIKLCVEICKALGKTLDELFWEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM86</accession>
    <name>R6YM86_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000173">
        <property type="protein sequence ID" value="CDD29726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29726">
        <property type="protein sequence ID" value="CDD29726"/>
        <property type="gene ID" value="BN815_01252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="49" mass="5292" checksum="A25FCF2A35D4CC44" modified="2013-07-24" version="1">MKKGSKLALFLGVVAAVAAVVAALSALLLYLDKKKDDEELEHYLDCSIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMC2</accession>
    <name>R6YMC2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8 11">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="2 8 11">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pgk</name>
        <name evidence="13" type="ORF">BN815_01257</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8 11">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8 12">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8 12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 11">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="2 8 11"/>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29766">
        <property type="protein sequence ID" value="CDD29766"/>
        <property type="gene ID" value="BN815_01257"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00318">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015911">
        <property type="entry name" value="Phosphoglycerate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PTHR11406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="SSF53748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00111">
        <property type="entry name" value="PGLYCERATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 12" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 8 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8 11" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8 9">
        <location>
            <begin position="24"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 9">
        <location>
            <begin position="62"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="333"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <begin position="359"/>
            <end position="362"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD29766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="403" mass="42594" checksum="8B6A35B8737A358B" modified="2013-07-24" version="1">MSFLSKKTIDDIDVKGKRVLVRVDFNVPMKDGVITNDNRIVAALPTIKKLVADGGKVILCSHLGKPKNGPEAKFSLAPCAVRLSELLGQPVVFADDDTVVGENAKAAVAAMNDGDVVLLQNTRFRKEETKNLEPFSSELASLAEVYVNDAFGSAHRAHCSTAGVTDHIKDTAVGYLMSKEIEFLGNAVENPVRPFVAILGGAKVADKLSVIENLLTKVDTLIIGGGMAYTFLKAQGKEVGTSLVDEEKIEYCQNMLKQAEEKGVKLLLPVDTVIATAFPEPIDAEIATEVVDSAKIPADKMGLDIGPKTRELFGEAVKSAKTVVWNGPMGVFENPVLAEGTRAVAKALAETDATTIIGGGDSAAAVMQLGYADQITHISTGGGASLEYLEGKVLPGIACIADK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNI1</accession>
    <name>R6YNI1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01406</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30161">
        <property type="protein sequence ID" value="CDD30161"/>
        <property type="gene ID" value="BN815_01406"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="17"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7705" checksum="AD6BD0B7C8AACB1E" modified="2013-07-24" version="1">MIELKQVTKEYGHATVLKNITLTLEEPGLYCLLGRNGAGKTTLCRFMVDARFRQEGLEEKALEHILRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNR6</accession>
    <name>R6YNR6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">CNA-B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01499</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30256">
        <property type="protein sequence ID" value="CDD30256"/>
        <property type="gene ID" value="BN815_01499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00222">
        <property type="entry name" value="CollagenBindB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008454">
        <property type="entry name" value="Collagen-bd_Cna-like_B-typ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05738">
        <property type="entry name" value="Cna_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437674" description="CNA-B domain-containing protein" evidence="2">
        <location>
            <begin position="30"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="domain" description="CNA-B" evidence="3">
        <location>
            <begin position="186"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="33840" checksum="48B1C081E68E61D6" modified="2013-07-24" version="1">MKRKGILGRAGALAALVLLACALAVTAAAQTIDLDRENTLTVSFGESGEGFPEVEFSLYPVAALTEEGEYTLTGDFAQYPVSLEDLDSSGLRSLAQTLDAYVARDTLTPLLSQETGEDGRVSFDGLSPGLYLVLGESYTQDNTVYTPSPMLFYLPGQGEDGGWEYEVTASCKFDQEEITDTTVSRKVQKVWKDNGNQSKRPEMVFVQLLENGAVVDTVALSEENNWEYTWEGLDASSRWQVAETNVPDGYTVTVTQEGTLFVVTNTYPGKTPSKLPQTGLLWWPVPLLACAGLALVLAGAGARRRGRGSHEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP56</accession>
    <name>R6YP56_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">S-layer domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000238">
        <property type="protein sequence ID" value="CDD30386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30386">
        <property type="protein sequence ID" value="CDD30386"/>
        <property type="gene ID" value="BN815_01607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="37"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="101"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="1">
        <location>
            <begin position="162"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="218" mass="23426" checksum="B7E5827DCF452A34" modified="2013-07-24" version="1">MDFVSGVTSANYSNPVQLWITSEDRDTTRMYTVTVEEGISFSDVNPGDWFYDNVMDAAENGYISGMGDGTFNPTGATTRAQFASMIANAMGYEANPDAKSAFPDVADDFWGKAAINFCAQNGIITGYDDGTFQPNKAITRQEAASILRNAFELTETTDELFPDDSAIAGWAKESVYLVKASGLMKGDAGTGNFRPTSTITRAEAASILMNAKYAGVIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPR1</accession>
    <name>R6YPR1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01759</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30546">
        <property type="protein sequence ID" value="CDD30546"/>
        <property type="gene ID" value="BN815_01759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="187"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="216"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="368" mass="39745" checksum="245F6C55FEFFD8C5" modified="2013-07-24" version="1">MEKSKVYFTNLRTTFDCNLLQKLKKLITAAGIGKIDFTNKYAAIKIHFGEPGNLAFLRPNYAKVVADTVKELGGKPFLTDCNTLYVGGRKNALDHLDAAYENGFSPFSTGCHVLIADGLKGTDETLVPIDGDYVKEAKIGTAIMDADVFISLTHFKGHEATGFGGCLKNIGMGCGSRAGKMEMHSSGKPHVAQEKCVGCGSCQKDCAHSAITITDRKASIDHAKCVGCGRCIGRCPVDAVQAASDEANDILNCKIAEYTWAVIKDKPSFHISLVVDVSPYCDCHSENDLPIVPDVGMFASFDPIALDQACADAVNAQPSVPGSILDERERCHHDHFTDTHPDTNWESCLEHGVKLGLGTRAYELITIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPR4</accession>
    <name>R6YPR4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01764</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000275">
        <property type="protein sequence ID" value="CDD30551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30551">
        <property type="protein sequence ID" value="CDD30551"/>
        <property type="gene ID" value="BN815_01764"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00941">
        <property type="entry name" value="CDATPASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="231"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="565"/>
            <end position="583"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="613" mass="65509" checksum="FD759BA224AA4274" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPS8</accession>
    <name>R6YPS8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Threonine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Threonyl-tRNA synthetase</fullName>
            <shortName evidence="10">ThrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">thrS</name>
        <name evidence="13" type="ORF">BN815_00143</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + H(+) + L-threonyl-tRNA(Thr)</text>
            <dbReference type="Rhea" id="RHEA:24624"/>
            <dbReference type="Rhea" id="RHEA-COMP:9670"/>
            <dbReference type="Rhea" id="RHEA-COMP:9704"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78534"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.3" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000279">
        <property type="protein sequence ID" value="CDD30571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30571">
        <property type="protein sequence ID" value="CDD30571"/>
        <property type="gene ID" value="BN815_00143"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004829">
        <property type="term" value="F:threonine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006435">
        <property type="term" value="P:threonyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00771">
        <property type="entry name" value="ThrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00184">
        <property type="entry name" value="Thr_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002320">
        <property type="entry name" value="Thr-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018163">
        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033728">
        <property type="entry name" value="ThrRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11451">
        <property type="entry name" value="PTHR11451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01047">
        <property type="entry name" value="TRNASYNTHTHR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55186">
        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00418">
        <property type="entry name" value="thrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 10" id="KW-0820">tRNA-binding</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TGS" evidence="12">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="11">
        <location>
            <begin position="265"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="382"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="507"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="634" mass="72130" checksum="DEB73ECB67DA2587" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPV3</accession>
    <name>R6YPV3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01812</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30601">
        <property type="protein sequence ID" value="CDD30601"/>
        <property type="gene ID" value="BN815_01812"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="9"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="283"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="93"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="33794" checksum="A80C703BF50AAEF3" modified="2013-07-24" version="1">MAKYVIKRVAYGVVTLFVLVSLTFFMQQLLPGDPFVGEKNLPEATMEALYAKYGLDKPVWMQYFIYLGNVLHGDLGISLQNDRPVTTVIGESFVVSFDVGIRAILFAFILGVVLGTLAAIKRGTAVDTICMLVALVGVSVPSFIVASLLQYYLGMRITMALGTPVFATTGWDGLNSKILPVFALGFSSLAQISRLTRTSMLDVLGQDYIKTAKAKGLSQPAIIWKHALRNSVTPVVTVLGPIAAGVLTGGFVVENIFSIPGMGRYFVQSIQNLDYTMISGTTIFYGAFLILANLVVDLVYGVIDPRVKLQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR78</accession>
    <name>R6YR78_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02195</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31041">
        <property type="protein sequence ID" value="CDD31041"/>
        <property type="gene ID" value="BN815_02195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="196"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="256"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="491" mass="54290" checksum="49285AE6FE0CC363" modified="2013-07-24" version="1">MFAKGVSRRWLVNTIGVVFLILVISITTISVMVQSSTYNGIELALTGRSDELLNWLSSSATLTSTSSGFTAVVRDYIEKFPDKNNMEIMALDQSGKVFITSTGFEPEQDQEMPDYEQALRSEYGSGKWVGHLNTGEKAMAITRVVRDDNGGLIGSVRYLVSMERADRQISLVIFILIAAGLFIMLLLTLSGAYFIRSILVPVRQLSQSARQIAQGDFAVRIDKAKDDEIGQLVDAINDMAGELGAAEQMKNDFISSVSHELRTPLTAIKGWAETLHEGADPDTTEKGMNVIIRESERLSGLVEELLDFSRLQNNRMRLMVSRLDILAELDEAVYMFTDRARTEEKQLNYEETTALPPVYGDVDRLRQVFVNIIDNALKYTSPGGTITVSSREDSGWVRVVISDTGCGIPAEHLPNVKKKFYKANQLVRGSGIGLAVADEIVRLHGGALDIQSQEDVGTTVTISLPTCSHLEADPQLTETPELLKFIQERNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRA6</accession>
    <name>R6YRA6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">TM2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02244</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31091">
        <property type="protein sequence ID" value="CDD31091"/>
        <property type="gene ID" value="BN815_02244"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007829">
        <property type="entry name" value="TM2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05154">
        <property type="entry name" value="TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="TM2" evidence="7">
        <location>
            <begin position="36"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="110" mass="12038" checksum="B0DD7EA184DD4FE8" modified="2013-07-24" version="1">MPETYNYNQNSGQQPMYNPPQYQPQAGMEPPPGYVQKSRVAAGILAILLGTYGIHSFYLGNTSRGLLQLLLSLFTCGIGAIVMFIWGIVDGVRILDGRINTDANGVFLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSV0</accession>
    <name>R6YSV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH gntR-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00015</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000440">
        <property type="protein sequence ID" value="CDD31666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31666">
        <property type="protein sequence ID" value="CDD31666"/>
        <property type="gene ID" value="BN815_00015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="240" mass="26574" checksum="DC2C6F16AEEE5B8A" modified="2013-07-24" version="1">METEYPKEKAYVTVIAYIKQLVQDGQLAFGGKLPSEREMMATLGLGRNSIREALRTLENMGLISCVHGKGNFLVNQIGESFSSVFSMLLFLKQSNFDEVQQLRRGLEMQSLLLAIQTADCTTAAAQAQWRQTLEPLGKLVESMRQATGHKRVTLDSAFHEALIQCSANRLFAVLQKAVSSLCEAAIENVLTAATDAQWQTLVDCHETIYQSLLNRDAQAGMAAIDQHYTQPFSDSLNTPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT61</accession>
    <name>R6YT61_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF362 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00478</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000450">
        <property type="protein sequence ID" value="CDD31791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31791">
        <property type="protein sequence ID" value="CDD31791"/>
        <property type="gene ID" value="BN815_00478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007160">
        <property type="entry name" value="DUF362"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04015">
        <property type="entry name" value="DUF362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF362" evidence="1">
        <location>
            <begin position="31"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="32459" checksum="EB03F1597791B119" modified="2013-07-24" version="1">MPAKVYFTRELTPEKVVELYRALGVELPGKVAVKVHSGEKGNQNFLRPEFWRPMVEAVRGTIVECNTAYGDATGGVRDNTESHLKLIEEHGWNKYFPVDLLDAQGPDVVWPIPHGKILKENHLGKNILHYDSMLVLAHFKGHPMGGYGGALKQLSIGCASRAGKALIHSAGKTDDRFATWQQHASAVEFPEAMADAASSVVEHFRGKLACINVMKNLSVDCDCCAVAEDPCMEDIGMLASLDPVAIDQACIDLVLRSNDPGKEHFMERVNSRNGIHTIEAAADLGVGTREYELIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9Y4</accession>
    <name>R6Z9Y4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00567</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000030">
        <property type="protein sequence ID" value="CDD27287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27287">
        <property type="protein sequence ID" value="CDD27287"/>
        <property type="gene ID" value="BN815_00567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="16"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="14899" checksum="C9ADFB25A1141D80" modified="2013-07-24" version="1">MAAARAACCHDFIMSLPDGYDTVVGEGGSTLSGGERQRISIARAILKDAPIVILDEATAGVDPENEHLIQQALSALTKGKTILAIAHRLATIQHADKILVVEDGRIVQQGTHAELMAQGGLYRRFIEIREQAEGWRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCQ2</accession>
    <name>R6ZCQ2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Ion-translocating oxidoreductase complex subunit A</fullName>
            <ecNumber evidence="8">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Rnf electron transport complex subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rnfA</name>
        <name evidence="9" type="ORF">BN815_00802</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the NqrDE/RnfAE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28277">
        <property type="protein sequence ID" value="CDD28277"/>
        <property type="gene ID" value="BN815_00802"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00459">
        <property type="entry name" value="RsxA_RnfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011293">
        <property type="entry name" value="Ion_transpt_RnfA/RsxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003667">
        <property type="entry name" value="NqrDE/RnfAE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02508">
        <property type="entry name" value="Rnf-Nqr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006102">
        <property type="entry name" value="NQR_DE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01943">
        <property type="entry name" value="rnfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="44"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="105"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="140"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="21973" checksum="4A989DDB45E317BD" modified="2013-07-24" version="1">MDAQTIKSLVAIFLAAILTENYILNKFLGICPFLGVSKKLDTAVGMSCAVTVVMVISTAVTWPLYTYLLVPNGLGYLQTIVFILVIAALVQLLETALRKYMPPLYNALGIYLPLITTNCAVLGVTMLVLEKGAEDPTFGYLQSLVNAFGSGVGFLVAMVLFAGVRERLENCDIPETFKGLPITLVAASLVAVSFLGFNGVVDNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDM5</accession>
    <name>R6ZDM5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">IstB-like ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00896</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28622">
        <property type="protein sequence ID" value="CDD28622"/>
        <property type="gene ID" value="BN815_00896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002611">
        <property type="entry name" value="IstB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01695">
        <property type="entry name" value="IstB_IS21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="177"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="5"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="329" mass="37058" checksum="613AFA88F5CB8A6D" modified="2013-07-24" version="1">MGYGNKIFQAACQELERRKRQAEELADRGRERFYEQCPRAREIREEMAQNAAGAAKAVLSGGDVRAEISRMKDRGLALKAEFNQLLAEHHLTEADVTPQYQCLACRDTGFVDGRMCACLKSLQRRMAFEKLSMSVPLENCTFESFSLDYYKDDERAYRQMEKVFAACKSYGEKFRADSPSLLFKGGTGLGKTHLSLAIAGKAIEKGFGVIYGSAQSFAVALERERFDRDLPEDGSTDAQLGECDLLILDDLGTEFPSAYVNAALYNIVNTRMMAGKPTIISTNLSLKELEQRYSQRFASRVTGYYGKLEFLGKDVRVQQRLRRAQQKNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEX7</accession>
    <name>R6ZEX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Exodeoxyribonuclease III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01038</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29037">
        <property type="protein sequence ID" value="CDD29037"/>
        <property type="gene ID" value="BN815_01038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020847">
        <property type="entry name" value="AP_endonuclease_F1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020848">
        <property type="entry name" value="AP_endonuclease_F1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748">
        <property type="entry name" value="PTHR22748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00726">
        <property type="entry name" value="AP_NUCLEASE_F1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00727">
        <property type="entry name" value="AP_NUCLEASE_F1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="3">
        <location>
            <begin position="9"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="261" mass="29905" checksum="9A58B9DCE53F9209" modified="2013-07-24" version="1">MKNGSLKLASWNVNGLRACMGKGFPQFLEEESPDVLCLQETKMQREQADFQFPGYHEYWNSATTRKGYSGTAIFSKTEPLSVTYGIGREEFDGEGRVIAAEYEEFLLVTVYTPNAQRDLARIQYRMAFEDAFREYLTALREKKPVIVCGDMNVAHRPIDLKNHRANIGNAGYSYEERGKFAELLASGFVDSFRHFYPDLEGAYSWWSYMGAARQNNTGWRIDYFLADERLVPQLEDSRILPQVMGSDHCPVELILTRRGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFQ2</accession>
    <name>R6ZFQ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29292">
        <property type="protein sequence ID" value="CDD29292"/>
        <property type="gene ID" value="BN815_01116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="380" mass="42487" checksum="E43B21628647BA32" modified="2013-07-24" version="1">MRENLDPILTDPDFLALPPQQDFLSQFRTMDTVPEEEAQWLVPGYIPQGQITLLAADGGVGKTSFWCQLLAALSTGKHTLLEEVSPKGDSDSLSEKADTPAETLSAKQDTPHKERWGAFFSTEDSVRKKLKKKLRLAGAKMMNLITLESSSAALLELRLGSPELSDFIHSYRPALCVLDPIQGFLPHGVNMAARNEIRECLAPLMALGEQVGTAFLLVCHTNKRAGAWGRTRLADSADLWDAARSVLMMGDAGDGRRYLSQEKNNYGPLQPTRLYTFSDRGLLVPAGLTQKRDREFQLQAQPPAAPKREGCKEAILALLEQHGGEMPVRELEEELREMGYSYRMWQRVRQQLKNEKRVAYRCEVLDGGRQWHISETPPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFR3</accession>
    <name>R6ZFR3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA methyltransferase TrmH family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01120</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29302">
        <property type="protein sequence ID" value="CDD29302"/>
        <property type="gene ID" value="BN815_01120"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013123">
        <property type="entry name" value="SpoU_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08032">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_sub_bind" evidence="2">
        <location>
            <begin position="34"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="SpoU_methylase" evidence="1">
        <location>
            <begin position="118"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="270" mass="28422" checksum="F6190E25CDD490F9" modified="2013-07-24" version="1">MEKITSRQNKTVREAAALLSSAEERAARGEFLCEGARLCQDAARSGIEVLRCFVTAQALEKYAAYLRPVLERARQSYLVADHVAGLLSSTKSPQGVFCQCRWPQGLLAGDAAGGGSCAVLEDLQDPGNLGTILRTAEALGIGRVVLLGDCCDPLSPKALRASMGAVFRLGLSLERSRQGLFSRLRGEGFRLLASVPDSAALPVTEVDFSQGPCAVFIGNEGNGLSQETIAQCQRVTIPMAGRAESLNASAAATILLWEMARAGGEGASHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI96</accession>
    <name>R6ZI96_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">DUF2179 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01417</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000199">
        <property type="protein sequence ID" value="CDD30172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30172">
        <property type="protein sequence ID" value="CDD30172"/>
        <property type="gene ID" value="BN815_01417"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019264">
        <property type="entry name" value="DUF2179"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10035">
        <property type="entry name" value="DUF2179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006483">
        <property type="entry name" value="Membrane_protein_YitT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426745" description="DUF2179 domain-containing protein" evidence="8">
        <location>
            <begin position="25"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="109"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2179" evidence="9">
        <location>
            <begin position="226"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="308" mass="33078" checksum="579AF714F375637D" modified="2013-07-24" version="1">MKGKKARTLLLDALCMLAGSAVYAVEVNAFTAPNNIAAGGITGVATMLNYLWGTPIGLVSFLINVPIVLWAVVDIGYKLVAKTVAAIALTSVMIDLFSRFVPAYHGDPILVALFAGLLEGLGLSLIFIRGATTGGSDLVARLLGRRLPHLSMGKLMLAVDGVVVAVSAFVFGSVENAMYACIVIFVSTKLIDAILYGADAGTGKLFFVMSPKVRQMGQRVIGELERTVTYLDSHGGYTNEPGETMLCAVRRFEVYQLQNIIREEDKDAFVIVGEAGQITGEGFRSMHSDDKPVKELLKELRQGGKDKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIE9</accession>
    <name>R6ZIE9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydrid cluster protein-associated redox disulfide domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30227">
        <property type="protein sequence ID" value="CDD30227"/>
        <property type="gene ID" value="BN815_01470"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023883">
        <property type="entry name" value="CHP03980_redox-disulphide"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015077">
        <property type="entry name" value="DUF1858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038062">
        <property type="entry name" value="ScdA-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39341">
        <property type="entry name" value="PTHR39341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08984">
        <property type="entry name" value="DUF1858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140683">
        <property type="entry name" value="SSF140683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03980">
        <property type="entry name" value="prismane_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1858" evidence="1">
        <location>
            <begin position="4"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="7307" checksum="7C04A91D47687FFF" modified="2013-07-24" version="1">MASITKDTIIGDILDMDQTTAPFFLEMGMHCLGCPSSRGETVEQACMVHGVNADELVAKLNEHLQNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZII7</accession>
    <name>R6ZII7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">(R)-citramalate synthase</fullName>
            <ecNumber evidence="4">2.3.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00115</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + pyruvate = (3R)-citramalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19045"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30934"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.182"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from pyruvate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the alpha-IPM synthase/homocitrate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.182" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000212">
        <property type="protein sequence ID" value="CDD30267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30267">
        <property type="protein sequence ID" value="CDD30267"/>
        <property type="gene ID" value="BN815_00115"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00066"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043714">
        <property type="term" value="F:(R)-citramalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005675">
        <property type="entry name" value="Citramal_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43538">
        <property type="entry name" value="PTHR43538"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00977">
        <property type="entry name" value="citramal_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="10">
        <location>
            <begin position="4"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="527" mass="57601" checksum="06E844494FFDF591" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIL1</accession>
    <name>R6ZIL1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Homoserine dehydrogenase</fullName>
            <ecNumber evidence="5 11">1.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_01526</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-homoserine + NAD(+) = H(+) + L-aspartate 4-semialdehyde + NADH</text>
            <dbReference type="Rhea" id="RHEA:15757"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>L-homoserine + NADP(+) = H(+) + L-aspartate 4-semialdehyde + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15761"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 11">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 3/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the homoserine dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.3" evidence="5 11"/>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30292">
        <property type="protein sequence ID" value="CDD30292"/>
        <property type="gene ID" value="BN815_01526"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00063"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00465"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004412">
        <property type="term" value="F:homoserine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016204">
        <property type="entry name" value="HDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001342">
        <property type="entry name" value="HDH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019811">
        <property type="entry name" value="HDH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00742">
        <property type="entry name" value="Homoserine_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000098">
        <property type="entry name" value="Homoser_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01042">
        <property type="entry name" value="HOMOSER_DHGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="11" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="7 10 11" id="KW-0521">NADP</keyword>
    <keyword evidence="8 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="NAD_binding_3" evidence="14">
        <location>
            <begin position="8"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="Homoserine_dh" evidence="13">
        <location>
            <begin position="132"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="9">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="7"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000098-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000579"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF03447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD30292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="416" mass="45261" checksum="95850F4C13FDC685" modified="2013-07-24" version="1">MAEIAVMGHGVVGSGVMEVLISHKDSIAKRAKEEVHVKHILDLREFPGLPYSGIFTKDFNKIVNDPQVKIVVEVMGGLEPAYTYVKACLENGKSVVTSNKELVAQKGAELLALAQKNNLNFLFEASVGGGIPIIRPISQCLAANEMTEIAGILNGTTNFILTKMIREGMAFDDALKLAQQLGYAERDPSADVEGIDACRKICILASLAYGTHVYPDSVHTEGITAITKEDVGYAGAWGGVIKLIGEVKKLENGRIHIQVAPMFISRESQLANVDDVFNGILVRGDATGDVVFYGKGAGKLPTASAVVADVIDCVRHLKSDRKILFWEDAKPDYVQPWEDTPQDLFLRVAGEGDSDSLFDKAQQVFPSAVRLIRKDERPGEAGFTVGQLSQRQLEERLPALRALGVELENRITIADF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIX1</accession>
    <name>R6ZIX1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01628</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30407">
        <property type="protein sequence ID" value="CDD30407"/>
        <property type="gene ID" value="BN815_01628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018652">
        <property type="entry name" value="DUF2082_NA-bd_Znr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09855">
        <property type="entry name" value="zinc_ribbon_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="70" mass="7875" checksum="FBD2EEBDBC1753E5" modified="2013-07-24" version="1">MEKLQYVCPKCGCTQYESDQFQATGGNFAKLFDVQNKKFVTVSCVNCGYTELYKAQSSDGWNILDFLVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJB5</accession>
    <name>R6ZJB5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-N-arabinofuranosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01750</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 51 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000274">
        <property type="protein sequence ID" value="CDD30537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30537">
        <property type="protein sequence ID" value="CDD30537"/>
        <property type="gene ID" value="BN815_01750"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046556">
        <property type="term" value="F:alpha-L-arabinofuranosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046373">
        <property type="term" value="P:L-arabinose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010720">
        <property type="entry name" value="Alpha-L-AF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06964">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00813">
        <property type="entry name" value="Alpha-L-AF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Alpha-L-AF_C" evidence="4">
        <location>
            <begin position="293"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="505" mass="57209" checksum="1C7F7FB80A84EFF3" modified="2013-07-24" version="1">MEKKFARITLDKDFQISRVDKRIYGSFIEHLGRAVYGGIYQPGHPSADEEGFRQDVLDLVREIGVPIVRYPGGNFVSNFYWEDSVGPVADRPRRLELAWRSTEPNLVGVNEFASWSKKAGSDVMMAVNLGTRGIEAACNLLEYCNHPSGTKYSDWRVSHGVEQPHNIKVWCLGNEMDGPWQTGHKTAQEYGRLADETAKAMKQIDPSIELVVCGSSNTKMPTYPQWEATVLEETYDNVDFISLHSYYGNPLNDTANYLASADDMDQFIRTIISTCDFVKAKKRSKKDMMLSFDEWNVWFHANAADNDTMTNRPWSVAPHLLEDHYDFEDALMVGLMLITLLKHSDRVRMACLAQLVNVIAPIMTEENGPAWKQTIFYPYLHASKYGRGIALNPALRSSKHDTKEFTDVDDVVTVAVWDDEKDEVTIFAVNRDLEEDIPLEADLRTFEGYRVLEHIVLENDDMLAVNTAGHQTVLPKAVTDRDELVDGILTSRLGKASWNVIRLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJT4</accession>
    <name>R6ZJT4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transporter ATP-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01917</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of an ABC transporter complex. Responsible for energy coupling to the transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cell membrane</location>
            <topology evidence="2 7">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30712">
        <property type="protein sequence ID" value="CDD30712"/>
        <property type="gene ID" value="BN815_01917"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006824">
        <property type="term" value="P:cobalt ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005876">
        <property type="entry name" value="Co_trans_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030947">
        <property type="entry name" value="EcfA_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01166">
        <property type="entry name" value="cbiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04520">
        <property type="entry name" value="ECF_ATPase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="283" mass="31170" checksum="5FAB004D098E2F43" modified="2013-07-24" version="1">MAFIEAQQVRFSYDAESVDAREVLHGVDLSIEEGEFVALLGHNGCGKSTMAKLFNGMLVPTAGKVLVGGIDTSVEETQLDVRRQVGLVLQNPDNQLVAGVVEEDVAFGPENLGVPPEEIRRRVDAALKAVDMYEYREHAPHKLSGGQKQRVAIAGIIAMETKCIVLDEPTAMLDPRGRAEVMETIQRLNREKGITIVLITHYMDEAVQAGRVVVMDEGEILRDGTPRQVFSDVEFLKRHDLDVPQATELSYRLAATGIKLPGMPLGVEECVSMFRRYLAGEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJU4</accession>
    <name>R6ZJU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sporulation transcriptional regulator SpoIIID</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01927</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30722">
        <property type="protein sequence ID" value="CDD30722"/>
        <property type="gene ID" value="BN815_01927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014208">
        <property type="entry name" value="Spore_III_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018356">
        <property type="entry name" value="Tscrpt_reg_HTH_DeoR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12116">
        <property type="entry name" value="SpoIIID"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00894">
        <property type="entry name" value="HTH_DEOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="9581" checksum="A62B3A524F8459B2" modified="2013-07-24" version="1">MKSRVIDDRATKLGEYIVENKATVRRAAKQFGVSKSTVHKDVSQRLKYLDSGLYRDVKNVLAVNKAQRHIRGGMATKKKYQAMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK98</accession>
    <name>R6ZK98_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000336">
        <property type="protein sequence ID" value="CDD30887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30887">
        <property type="protein sequence ID" value="CDD30887"/>
        <property type="gene ID" value="BN815_02049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025964">
        <property type="entry name" value="GGGtGRT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14057">
        <property type="entry name" value="GGGtGRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="35546" checksum="94E802DC7E751B59" modified="2013-07-24" version="1">MANDVMFEGKERRMPKIEKCLAEYGIASLEEARELCKSKGFDPYEIVKGVQPIAFENAGWAYTLGCAVAIKKGVKTAADAAEAIGIGLEAFCVPGSVAEQRNVGLGHGNLGAMLLRDETKCFAFLAGHESFAAAEGAIGIAKTANRARKEPLRIILNGLGKDAAYIISRINGFTYVKTDYDFFTGELKVVEEKPFSEGERAAVKCYGANDVLEGVAIMKAEGVDVSITGNSTNPTRFQHLVAGTYKKWANENGKKYFSVASGGGTGRTLHPDNMAAGPASYGLTDSMGRMHGDAQFAGSSSVPAHVEMMGLIGMGNNPMVGATVACAVAVYEGTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL96</accession>
    <name>R6ZL96_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="16">Peptidase M50 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BN815_02366</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M50B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31222">
        <property type="protein sequence ID" value="CDD31222"/>
        <property type="gene ID" value="BN815_02366"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06158">
        <property type="entry name" value="S2P-M50_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044537">
        <property type="entry name" value="S2P-M50-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="105"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="185"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M50" evidence="15">
        <location>
            <begin position="139"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD31222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="231" mass="25477" checksum="57D42D8E56924D0C" modified="2013-07-24" version="1">MLFDVIRSLAYGQHVDVWAVLAQVLSVVFVILCILPLHEFAHGWVANKLGDPTAKLEGRLTLNPLASVDPMGALALILFGFGWAKPVPVNSRYFKHHKRDMAITALAGPVSNLLAALVGAVLVVVMEVFAPYNGVTQFIYNVLYYYVVVNISLAVFNLIPLPPLDGSRIVAAFLSDRAMYTYYRYQNVFVLIMFLLLFSGAMSGPLSTAQNFFARVIFSLAEAPFRLFGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLB9</accession>
    <name>R6ZLB9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Stage IV sporulation protein A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000387">
        <property type="protein sequence ID" value="CDD31247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31247">
        <property type="protein sequence ID" value="CDD31247"/>
        <property type="gene ID" value="BN815_02391"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043934">
        <property type="term" value="P:sporulation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014201">
        <property type="entry name" value="Spore_IV_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09547">
        <property type="entry name" value="Spore_IV_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007466">
        <property type="entry name" value="SpoIVA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02836">
        <property type="entry name" value="spore_IV_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="491" mass="55683" checksum="C665CA71568EC8A5" modified="2013-07-24" version="1">MEGFNVYKDIQDRTHGEIYIGVVGPVRTGKSTFIKKFMDTVVIPHIPDGIQRERAIDELPQSSAGRTIMTTEPKFIPEQAVDVQIDEDASFRVRMIDCVGYIVPSAIGYIEEDQPRMVRTPWYEEPIPFNMAAEIGTKKVITEHSTIGLVITTDGTISDIPREEYEEAEERVIDELNQTGRPYVMLLNCVEPERPEARELAARLGEKYSIPVLPVNCIDITEQDIRDIIASLLYQFPVREVALDLPGWVTSLESGHWLLSGVLASLRGACCIHKMCQVKSMLERLRECEPVKEVRVGRIDLGSGTGRAELVFDQSLFYRIVGERTGLEIQDDSQLMAQLVEMTAIKKQFQKLQQAYEDVQQTGYGIVMPEVEELTLEEPKILKQNGKYGIRLKATAPSIHMMKTQIHTEITPIVGSEQQSEELVMYLLKEFEENPVKIWDSNIFGKSLHSLVNEGMHNKLYRMPADAREKVRETIERIINDGCNGLLCIIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLF5</accession>
    <name>R6ZLF5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavodoxins</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31282">
        <property type="protein sequence ID" value="CDD31282"/>
        <property type="gene ID" value="BN815_00220"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12682">
        <property type="entry name" value="Flavodoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="6744" checksum="E02B6E17F20FF879" modified="2013-07-24" version="1">MDTFLESGDFSGKAMVPFATSGGSAMPPAERHLREQYPAFTWKAGQLVTPRTAGAWAQSALGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLI5</accession>
    <name>R6ZLI5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Iron chelate uptake ABC transporter FeCT family permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00008</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000396">
        <property type="protein sequence ID" value="CDD31312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31312">
        <property type="protein sequence ID" value="CDD31312"/>
        <property type="gene ID" value="BN815_00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="114"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="197"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="33716" checksum="8D94496F20089AF6" modified="2013-07-24" version="1">MGVLDINPQSLLAGDGEQWEVFFISRLPRLLAILCTGVGMSVAGLIMQQLCSNKFVSPTTGATISSAQFGILLALLFMPSSTLWSRAFFAFACAILGTWVFVWFIQRIQFKDVVMVPLVGIMFGNVIGGITNYLSYKYEMTQAMSSWLVGHFSIVLSGNYELVWLSVPLVVLAFVFANHFNIVGMGKDFSKNLGVPYNLVLFLGLSIAAMITASVVVVVGSIYHATNMMRTVRKLCDELGKTVILVLHEINYAAFYSDYICAFVDGKVAKFGTVEEVMTKEDLSAIYQVDFEILEIEGKPLSIYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLP2</accession>
    <name>R6ZLP2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Low molecular weight phosphotyrosine protein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00308</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the low molecular weight phosphotyrosine protein phosphatase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31377">
        <property type="protein sequence ID" value="CDD31377"/>
        <property type="gene ID" value="BN815_00308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017867">
        <property type="entry name" value="Tyr_phospatase_low_mol_wt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00719">
        <property type="entry name" value="LMWPTPASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="4">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="164" mass="18362" checksum="C4EF2B0554678FF5" modified="2013-07-24" version="1">MKILFVCTGNTCRSPMAEGIFRKMMVERGMEERVLCQSAGLSAVEGAPVSENAVLACREIGVDISDHTARRISGEELSVWDLYFPMSKTHGYILAQAGVPQTKIYIPKYIADPYGAPLEDYRACRDKLVQQLEVFYESYVTRLLVFDNTTPPPPPFPEGSRPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLQ8</accession>
    <name>R6ZLQ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Aamy domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00323</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 13 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31392">
        <property type="protein sequence ID" value="CDD31392"/>
        <property type="gene ID" value="BN815_00323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032091">
        <property type="entry name" value="Malt_amylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045857">
        <property type="entry name" value="O16G_dom_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16657">
        <property type="entry name" value="Malt_amylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="2">
        <location>
            <begin position="18"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="442" mass="50589" checksum="DBFB1E84824194BD" modified="2013-07-24" version="1">MLHGKPEKDWAQSAVFYQIYPMGFCGAPFENDGVAVNRIQKVKEWIPHLEKLGIGAIYFSPVFQSDTHGYDTRDFKKIDCRLGTNQEFKEVCDALHQAGIRVVLDGVFNHVGRGFWAFQDVKEKREASPYKDWFHINFGGNSGYNDGFWYEGWEGHYELVKLNLQNPAVVDYLLDCVGGWMEEFSIDGLRLDVAYLLDENFMRRLHSYVRQRDEGFFLLGEMIHGDYKRIVNEEMLDSATNYECYKGLYSAFNSLNMFEIAHSLARQFGPEPWTLYKGMHLFSFCDNHDVTRIASILQDKKQMNALYAVLFCMPGIPCVYYGSEWGAQGEKHQGDPALRPCFEKPLENDLTEFLGKLSRIKSSCVALKDGGFQNLTLRNKQWIFVRQCPAQTVIVAVNAEENPCQMECAYNGPTVELLTGEKTDLHGTVELPGYGVKIYKMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMC6</accession>
    <name>R6ZMC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00419</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31602">
        <property type="protein sequence ID" value="CDD31602"/>
        <property type="gene ID" value="BN815_00419"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039672">
        <property type="entry name" value="MFS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11328">
        <property type="entry name" value="PTHR11328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="121"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="163"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="252"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="288"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="320"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="389"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="432"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="465" mass="49543" checksum="11420341912FC90A" modified="2013-07-24" version="1">MKKITLPGTLCRGEKVSKQERFLGYLVGPLGFGFLSLMVNSYLNVYYTDVCGLGRLWGGSFMSVYPILVKGLDVLTYLAAGWLVDRTVTTQGKARPYLLLSGALLPVSALLLFLVPQGNDFLTAAAVLCSNLFFFAVVATLYCTANTLMVPLSSTDPRERSQLAVTVNAQGLLTGTTVAVVFPAVILPAIGVDQGRWITVMVCTAVVPVPLLALQYLFTRERVTEQEQAAGERRPKLSLARQLRCCAKSRPWLLLMAYFLLLGLVNALSSSAVFYYCSWVLGSYNDGITQVLFYAIGNLPMGIGVFLCNPLCKRLGRARAMVGGLLLSCGGLGVCLVFPTSLPAVLAGQFIKAFGTIPSTYLASVLLSEALDDVQAKSGVRCDGFTSSLYNSMLTITSGVAVSLLNGGMALFGYLAPAAGAIPTQPQAVRGFFTFCQLGVPLLAYPVLAALLYGMGKSQGSVKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTN8</accession>
    <name>R6XTN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00500</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000010">
        <property type="protein sequence ID" value="CDD27073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27073">
        <property type="protein sequence ID" value="CDD27073"/>
        <property type="gene ID" value="BN815_00500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="353" mass="38507" checksum="4C486B72B4D53B68" modified="2013-07-24" version="1">MDRGKNLIQLVLVGILSLMLVSCGTPPTRDNGDSLLVSDGSSLSSGAHTEETTSPVAIDNSHLTVMPERVEDVYSQGKLSLVLDAEVVPVKQEQVYTWKSENFNIGDESFQKQMADELLGVSYDIEPNANGGSNYIGDSGVLSFNPDIDFTSYRTLETVELDTTLNNLVSDEDLNNQYVDKMNDILDSIGVHHFAPAFCAKYGSGNTGFFYEIACQPIIEGLPIVNSGAQPTSIEEVPPYEEVRACIGEDGQLLLLNFRSSQIEEESRQEVKVISLEDALNILRQEGMAVLSRALSDAQSLTVQMINLAYAHLPQDGGFVLTPIWMFGLERVDQEGNISSVTFAVNAITGKIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUA1</accession>
    <name>R6XUA1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type III restriction enzyme res subunit family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27313">
        <property type="protein sequence ID" value="CDD27313"/>
        <property type="gene ID" value="BN815_00584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ResIII" evidence="1">
        <location>
            <begin position="34"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="202" mass="23653" checksum="81EF067EF4FD8EDE" modified="2013-07-24" version="1">MLYLIDTTNGKEQILEHHSTQHFTKDWLYLVTHNMVDFEDAKVVVMTYAKFGTLVEFYKSRFQKDFGDTFEFILCDEIHNLPRFSAFLHSPRDTNYHRIAKERIEEIVSKQTGPQVIGLSATPRRAETGMFCKTKYITVDSDVRKLETQNIVPYANLESLIPTLPKDKKYLVYASHITKMKQLTEIFHQRSIKAIAIWSEKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6XV87</accession>
    <name>R6XV87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00684</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000052">
        <property type="protein sequence ID" value="CDD27648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27648">
        <property type="protein sequence ID" value="CDD27648"/>
        <property type="gene ID" value="BN815_00684"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="81"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15639" checksum="6D35E981AFC16994" modified="2013-07-24" version="1">MAKGFGGTNSFLAERLRQARLQAGYSQQNIADALNVNRATYTYYETGKTSPDPVTLGKIARICGAPIEFFFEEEDTPNRPLFLTDRERCPKKPFPNPNKIGELTPDEKKLIALLRTSQTVSASETANWVIAQRESRNDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVA4</accession>
    <name>R6XVA4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00692</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA polymerase type-A family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000053">
        <property type="protein sequence ID" value="CDD27673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27673">
        <property type="protein sequence ID" value="CDD27673"/>
        <property type="gene ID" value="BN815_00692"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019760">
        <property type="entry name" value="DNA-dir_DNA_pol_A_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001098">
        <property type="entry name" value="DNA-dir_DNA_pol_A_palm_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002298">
        <property type="entry name" value="DNA_polymerase_A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10133">
        <property type="entry name" value="PTHR10133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00476">
        <property type="entry name" value="DNA_pol_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00868">
        <property type="entry name" value="DNAPOLI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00482">
        <property type="entry name" value="POLAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00447">
        <property type="entry name" value="DNA_POLYMERASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLAc" evidence="4">
        <location>
            <begin position="1"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="25706" checksum="83E1327B868F3BDF" modified="2013-07-24" version="1">MDADYSQIELRVLAHVADDAAMKEDFVEGRDIHTATAARVFQMPVDMVTKDMRSKAKAVNFGIVYGIGAFSLSKDIGVTRKEADDYIKEYLRNYAGVDAYMKRVVEEAKEKGYVETLFGRRRYLPELKSGNFNLRAFGERVARNMPIQGAAADIIKIAMIRVSSRLAREGLQGKLILQVHDELIVECPPEEREQVERILQEEMEGAVRLSVPMVAEAGSGRTWFEAKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVD3</accession>
    <name>R6XVD3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">DNA repair protein RecO</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Recombination protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recO</name>
        <name evidence="9" type="ORF">BN815_00045</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in DNA repair and RecF pathway recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the RecO family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27703">
        <property type="protein sequence ID" value="CDD27703"/>
        <property type="gene ID" value="BN815_00045"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00201">
        <property type="entry name" value="RecO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022572">
        <property type="entry name" value="DNA_rep/recomb_RecO_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003717">
        <property type="entry name" value="RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042242">
        <property type="entry name" value="RecO_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33991">
        <property type="entry name" value="PTHR33991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02565">
        <property type="entry name" value="RecO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11967">
        <property type="entry name" value="RecO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="SSF57863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00613">
        <property type="entry name" value="reco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_rep/recomb_RecO_N" evidence="8">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00033409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF11967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="27450" checksum="75D2E6B0C117F543" modified="2013-07-24" version="1">MQVVTQGLIIKEQAVGESDRLVTILTKDEGVVRAFARRAKNLKDSKNAATGLLCYSRLKLSKGRDTYNVNEAFPIEVFFGLRKDVTALALAQYFCQLAVELVPEGVESSEYLRLVLNALHFLCQGTRPQPLLKAIVELRMVSEAGYMPNLAYCANCGAYQAERMYFKINRGELYCKSCYIHTGDPCAPLSPAALTAMRHIVLSDFEKIFSFSVSPGALGELSAAAEAYTVEILQKRPKTLDFYHSML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXX7</accession>
    <name>R6XXX7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4996 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28583">
        <property type="protein sequence ID" value="CDD28583"/>
        <property type="gene ID" value="BN815_00885"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032160">
        <property type="entry name" value="DUF4996"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16387">
        <property type="entry name" value="DUF4996"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4996" evidence="1">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="10339" checksum="19B5D0F22E04489D" modified="2013-07-24" version="1">MEFQASTPQDPLYQDEAIRSAQEAGVFVWANAIKLWPTEVGSLFAGLDDDAALAGDPDGSWGEMMRKGVRVIQTDWPWQLSRYRARYFRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XY40</accession>
    <name>R6XY40_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative efflux protein MATE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000099">
        <property type="protein sequence ID" value="CDD28668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28668">
        <property type="protein sequence ID" value="CDD28668"/>
        <property type="gene ID" value="BN815_00915"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="238"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="318"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="388"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="453" mass="49399" checksum="C3216B0FF74D5053" modified="2013-07-24" version="1">MKTADKQFYRSFFAVVVPIAIQNLINSAVGMADTLMLGFVSQTAMASNSLAGQIHFILNMFYSGLAAGTTMLAAQYWGRQNMKAIEHILAIGVKLAAAVGVLFFVATVFFPAQLMRIYTNDPSMIEAGAAYLQIVGWSYLFMGLSHPYLSILKSVERAKISTLINSSALLINVVLNATFIFGWIPGVAPMGIQGVALATVISRIGEFLLCLAYGQKFQVLRLRPGLFTMFNRVLWRDFIRYSLPALGNECVFAVGSSMYSVIMGRLGEDLVAANSIMASLRSVATVLGFGVANGTAILLGKAIGAGDMARAERDAKRLLGLTFLASLLGSAVVLAAYPIITHTMTTLSEQALSYFGIMTAISVVYVWGPPMNTCWMCGVFRAGGDSKFGFILDVICMWVVMVPLGLLSAFVLKLPPMWVYFILSLDETIKMPANIIHYRKKGWLRNITRDKIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYN3</accession>
    <name>R6XYN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28868">
        <property type="protein sequence ID" value="CDD28868"/>
        <property type="gene ID" value="BN815_00992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15385" checksum="05206E4310F6AF6D" modified="2013-07-24" version="1">MERKLVFDIAIESNGPAVHLSSETGAVDMIPFGGTVRGEIFQGIVEPCGVDTQVLNQAGVRHMSARYMLTGQDSQGQEAHIYVENNGWFPEGAPMPFHTVPTFLTDSPALAPYLHRNQFEGEVHSLEDGLHIYFYEIAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZM0</accession>
    <name>R6XZM0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00491</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000007">
        <property type="protein sequence ID" value="CDD27035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27035">
        <property type="protein sequence ID" value="CDD27035"/>
        <property type="gene ID" value="BN815_00491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="12154" checksum="7EA3C02777C28350" modified="2013-07-24" version="1">MEKKRKTEVILSLSLCVVSFFYAVYLSSDLLFRDFITCEGVFQKYNRARYELVVWDVSFEIDGETSSFNLMNSVENIHSLVPGGTYKITYAKRTNMLLSISPYQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZS2</accession>
    <name>R6XZS2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00504</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial sugar transferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27110">
        <property type="protein sequence ID" value="CDD27110"/>
        <property type="gene ID" value="BN815_00504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003362">
        <property type="entry name" value="Bact_transf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017475">
        <property type="entry name" value="EPS_sugar_tfrase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02397">
        <property type="entry name" value="Bac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03025">
        <property type="entry name" value="EPS_sugtrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="74"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="104"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_transf" evidence="8">
        <location>
            <begin position="248"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD27110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="457" mass="52242" checksum="7474C1CC862F8DC8" modified="2013-07-24" version="1">MQHDVKVGTAKVVNPILLTLPFLGIWFFYYAERTVSPFYYWGNWVVVALFFILYILFCRIYDGFLISINRISEIVYSQALASVISDFLLYVVICLLSKRLVNPLPLFGALVVQVLLSGLWAYYAHRWYFSKFPAKRTAVIYDVREGLERLVEEYGLEKKFKIQIAMNVQQALANKELLNRMETVFLSGIHSHDRNILLKYCVEKDINVYVIPRIGDVLMSGAQSMHMFHLPMLQVGRYHPSPVYLFLKRGFDILASGIATVILSPVFAATAIAIKRYDGGPVFYKQQRLTKDGKIFEVLKFRSMRVDAEKDGVARLSTGDKDDRITPVGRFIRKVRIDELPQLLNILKGDMTICGPRPERPEIAAQYEEELPEFRLRLQAKAGLTGYAQVYGKYNTTPYDKLVMDLMYIAHPSFLQDLQIMFATVKILFMKESTEGFAQATVQENGAGKKADEGKIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0A2</accession>
    <name>R6Y0A2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01156</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 43 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000148">
        <property type="protein sequence ID" value="CDD29443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29443">
        <property type="protein sequence ID" value="CDD29443"/>
        <property type="gene ID" value="BN815_01156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.115.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006710">
        <property type="entry name" value="Glyco_hydro_43"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023296">
        <property type="entry name" value="Glyco_hydro_beta-prop_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04616">
        <property type="entry name" value="Glyco_hydro_43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75005">
        <property type="entry name" value="SSF75005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="357" mass="41145" checksum="72BDA8837A60A493" modified="2013-07-24" version="1">MNTPASSIRPGQPWLDTQGKRIQAHGGSVMYLDGTYYWYGENKEKTDGKNGIWHWGVRCYASTDLYNWEDKGLIIPPEPEDPNSSLHPSASMDRPHILYNQRTKKFVCWLKIMNRDKTQTETVLTADHILGPYTKVREGLRPLGMSAGDFDLAVAPDGKAYYYFERVHSETICADLTDDYTDVTGYYSTHFPHAGPPYVREATAHFCRKGKHYLVTSGTTGYLPNPSEVAIADTWHGPYTVLGDPHPTDPSHTSFHSQISSVFQVVGKKDLYIAVADRWCPQDMDVPYDFTREMFEYLFQGRREEIPALAERYGIQRPAGDRERDTSIADYVWLPFRFEGDRPYLDWHDEWRIEDYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0A8</accession>
    <name>R6Y0A8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00581</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27310">
        <property type="protein sequence ID" value="CDD27310"/>
        <property type="gene ID" value="BN815_00581"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="274"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="334"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="359"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="391"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="417" mass="45528" checksum="60FC17747F793A85" modified="2013-07-24" version="1">MRFREIGSHLREEKRVLHCGMLLLGFAALLVLILMKFDQVWGAVSTVAGTVAPVFYGIAIAYILNVFVHFFEDVAFRPFRDSKSKAWAKVRRPLSVALAYLVVALVIVFIAAFIIPGMVESLSVLADTVQQNAPVYFNNAMAWLNNFAQENDLTFIEEFLAGFNWSTLLSSLTEVLRDFLSSLVGVTFNVASGVFAAVMGFIFSVYMLMGKEKLLRGVKSSLLAFLPKAAARKVGQVATLTNKVFFNFIRGQLLECVILGSLCYVGMSILRLDYALLISSVVALGALIPILGAYIGAAVGVIILLLVHPLDAVIFLVFLLILQQVEGNLIYPRVVGSSIGLPPLWTLFAVVFWGGVLGIPGILFGTPATAVLYRLFRSSVRARLRTRAIDPKNPSLLQEEGAGEASQPEDAEGDLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0N3</accession>
    <name>R6Y0N3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000165">
        <property type="protein sequence ID" value="CDD29583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29583">
        <property type="protein sequence ID" value="CDD29583"/>
        <property type="gene ID" value="BN815_01196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="26923" checksum="E5D951CE49D40852" modified="2013-07-24" version="1">MAAGLLALLIAWVLAGRDRPLRKLLAGCMVALAVFGGVFQGWLDRGKAVFALPEAGAESCVVLVQDGRAAVLSCGGYQTGAVCQILQRHNVREVTALCLPDRSPDAREAAAQVLEEYGAGALVLPEGAYLGRDLELALGDTLVGHLSGGQAFDVLPGVTARILPRWEGLRLTVHGVEVLVEWERAQAQSCGVLLTNQEESRVNSSLSVWQTDAIIGENGQGWAFSQPGEATVLAVEDGCLAVEITPAGAVTARRES</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Q8</accession>
    <name>R6Y0Q8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29613">
        <property type="protein sequence ID" value="CDD29613"/>
        <property type="gene ID" value="BN815_01207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="162"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="174"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="30552" checksum="AA6FB982F443E637" modified="2013-07-24" version="1">MTKKEWQRHMAYEALVILGMLALLLFVCRLWPILLLVILGIFAAVLRLVFLSSPKVQPIRPEQPTSVAPAPQRAVTNREAENTEDAQSFGDLQTQITRWVRQEYPNARWVWKYPDAKARFQRGEDVAILLNRAGGYREAVIHLQGKRLFEIRYLCAPAEKPQLEEPASPQEEQPTLEEAASQPEPSQPEDYSLAAFEWVESHLEELNTLCNECIAQKQDFLLLTGGDLPEPAAWPALCQELLRNGLSCHMEEEGIRIQIAREDRRKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0S4</accession>
    <name>R6Y0S4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01217</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29633">
        <property type="protein sequence ID" value="CDD29633"/>
        <property type="gene ID" value="BN815_01217"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="210"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="77"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="33541" checksum="3C5676A61F5DB708" modified="2013-07-24" version="1">MKEKTGLAKVRARSTAIAATVFLLPTILLIIVYMIYPIIDTFVISMYKWNGISSDRVFIGFTNWQNLLVDGEFWTSFGHNVIVMVFSILLQIPIGLLLATFLDALGKKANAFKIVWFFPYLMSSVAIAFLFTYALATNGGIFSELASLIAGKNVTVDLLGRNPQALYTVIGVMAWQFTPFYMVYFIAGYSNIDTSIYEAAIIDGANRRQYLFKIAIPLLMPIFKTACTMSLIGSLKYFDLIWNLTGGGPSGGTELMATYMYKLSFQQFNMGYGSCVAAGMFILITAIALLFQKVFVVKEDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y159</accession>
    <name>R6Y159_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00649</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27535">
        <property type="protein sequence ID" value="CDD27535"/>
        <property type="gene ID" value="BN815_00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025466">
        <property type="entry name" value="DUF4317"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14199">
        <property type="entry name" value="DUF4317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="387" mass="42895" checksum="4850BA00356122F3" modified="2013-07-24" version="1">MHTKEVSELRRRWQAEKNAVKRIYGYYVNASGEIVTDLDEPLSLMPQEEAEQYFALLKKALSGKLGKNLLDLVFSTQQVADSDEHRLLMSLRDSELQDLEARQAFYQKAVESLHLEGSYLLLLAHDTYDVPTKAKDGAALEDGEIVFSYLLCAVCPVKEGKPGLGYYAGDNEFHCFAPQTVAAPECGFLFPAFDDRAANLYNALFYCRKPDALPQEFIESVFHTDIPMAADQQKETFRESLAEALGQSCSMDVVQVVYSQLDGMLTEHKESGREEPLTVTAKDLAHILQGCEVPEENIQAFQSLCDEKFGEGVALNPANLIDPGKVEIKTPQVSLTVEADYSPLVQTRVIDGQKYLLIPAGEGVEFNGLAVKIPGELEEAQKEGNGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1H9</accession>
    <name>R6Y1H9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Methyltranfer_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00691</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000053">
        <property type="protein sequence ID" value="CDD27670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27670">
        <property type="protein sequence ID" value="CDD27670"/>
        <property type="gene ID" value="BN815_00691"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016718">
        <property type="entry name" value="rRNA_m1G-MeTrfase_A_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018249">
        <property type="entry name" value="MyrA_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="3">
        <location>
            <begin position="96"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="2">
        <location>
            <begin position="105"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR018249-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR018249-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="278" mass="30733" checksum="D56A3615770425C0" modified="2013-07-24" version="1">MGELLFCCPLCGGALTRQEHRAVCPQGHSFDVARQGYVHLLPVNKMHSKLPGDSREMVEGRRRFLEAGYYAPFRQELCRLAAACASQLGRPAGEGLLLCDAGCGEGYYTAGLREALPQARVCGFDISKLAVKAAAGKYKSVEFGVASSFAIPLGKASVHLLTDVFSPLAAEEFARVVKPGGFFLYAVPGERHLYGLKELLYENPYENPHRETEYPGFRFVGRTAVRGEIRVPDSQTAVDLFTMTPYYWKTGPQAAQRLETVEGFSTEIGFDFLLYQRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y225</accession>
    <name>R6Y225_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00724</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000066">
        <property type="protein sequence ID" value="CDD27865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27865">
        <property type="protein sequence ID" value="CDD27865"/>
        <property type="gene ID" value="BN815_00724"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="46925" checksum="745D4E8306DC4BE3" modified="2013-07-24" version="1">MADDKKKMTAQVSSVSADAGQSIQKDSDNSIPASEAKGNGEMENLEEMYRKMQRMADPRYLHTLTMTELFQTSYKSRPPIIENLLHSGAYILAGAPKIGKSFLVAQIAYHVSTGQDLWGCKVHQGTVLYLALEDDFQRIQNRMFMMYGVNDTPNLHFATAAGKIGNGLDEQLENFMREHPGTKLIIIDTMQKIREVGGEAYSYASDYEIVGKLKQFADKHCICVLTVHHTRKQPAGDAFEMISGTTGLLGCADGSLLMQKKKRTALEATIDVVGRDQQDQILYLKKDPDTQIWNLERMETEPHKEPPDPVLEAVARLVNANQQEWTGSPSELAAAVQVGMAANALTKYLNVKSGRLLEEYHVGYENKARHAGRQVKLTYMLVEAPFFEVVDDGRDGSDGCNGENATTQTTVTIVAAVAERNGSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2G8</accession>
    <name>R6Y2G8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">FHA domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01496</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30253">
        <property type="protein sequence ID" value="CDD30253"/>
        <property type="gene ID" value="BN815_01496"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="23169" checksum="CF4C2D2F216E2366" modified="2013-07-24" version="1">MAEIRQKIISCSQGHYYDANRYDSCPYCNSGSFSPTVDPFAPQAQGVNPTVGLEGGGAPLGQNYGGFSPTLPPQQPERVSSAMGKTQYVDSSTPAGAPAPVVGWLVAVSGPCRGTDYRIHTGYNYIGREAGDICIRGDSTISAEKDANITYVPQTMEFYIAHELGKNVLLVNDRPVIGGSMKLDNYDIVTIGSTKLMFVGLCGKDFNWGSEGKEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2T1</accession>
    <name>R6Y2T1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase group 2 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00123</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30348">
        <property type="protein sequence ID" value="CDD30348"/>
        <property type="gene ID" value="BN815_00123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="10"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="313" mass="35690" checksum="5954F2F60D76E02F" modified="2013-07-24" version="1">MMNKEKNFVSAVVYVHNAGKRIERFLGTILSVLEKNFEHSEVICVNDCSTDDSADVIKRVSRGASTASISIVNLSYFHGVEVAMNAGMDLAIGDFVFEFDKTILDFDKDIIMKIYRRSLEGYDIVSASPDKKQKLSSRMFYYVFDKFADFKYKMTTESFRILSRRVINRISSMNKTVPYRKVVYASCGLQSDNIRYPVVNTGEDTTADTLEKRERSSLAVDSLVLFTNFGYSFAKTMTVVMILAALFMAVYSLVVYLIGSPIEGWTTTVMFLSFSFFGLFGILTIVIKYLQIIVNLVFQRKRYTFNSIEKLTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y368</accession>
    <name>R6Y368_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Site-specific recombinases DNA invertase Pin homologs</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01665</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30448">
        <property type="protein sequence ID" value="CDD30448"/>
        <property type="gene ID" value="BN815_01665"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13096" checksum="5A55058C0F4B7FA7" modified="2013-07-24" version="1">MITERIEKRQHEKEELQAQLAVEMAKQVTLTTPQVRAYLYSLRQGDKNDENIKRGIINIFLRAVYLYDDRFILVLNGSNTPITIDDILLDEIEEGLEGDLTSCAGCSSLVADAPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3C3</accession>
    <name>R6Y3C3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Homoserine O-succinyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01704</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000260">
        <property type="protein sequence ID" value="CDD30488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30488">
        <property type="protein sequence ID" value="CDD30488"/>
        <property type="gene ID" value="BN815_01704"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033752">
        <property type="entry name" value="MetA_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20919">
        <property type="entry name" value="PTHR20919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04204">
        <property type="entry name" value="HTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="61" mass="7436" checksum="2DE3C63743646492" modified="2013-07-24" version="1">MAKEYFRDINKGLNPKVPYHYFPDDDDTKTPPFTWRSNAHLLVSNWLNYYVYQQTPYDFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3C8</accession>
    <name>R6Y3C8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Magnesium chelatase subunit ChII family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01709</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000263">
        <property type="protein sequence ID" value="CDD30493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30493">
        <property type="protein sequence ID" value="CDD30493"/>
        <property type="gene ID" value="BN815_01709"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="35"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="228"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="33848" checksum="2DC0E4A9DAC6AA8B" modified="2013-07-24" version="1">MENILSAVKANIQKVLVGEERVTSLLLTALVAGGHVLIEDVPGMGKTVLARSLAKSVDGAFGRIQFTPDLLPSDVTGLNFFDNKSGEFQFSPGPVFCNILLADEINRATPRTQSALLECMAEGQVTVDGETRRLAPPFFVIATQNPVETLGTYPLPEAQLDRFLMRLSMDLPTREQERQILERFQASEPLEELGPVCKPEEIVALQAAARKLYIHPVLLEYIVDLARASREARGVDLGVSPRGTLALLRASQAKALVEGRAFVTPEDIKEVGVPVMAHRLAISGMAGSSQAQKEAAQALLQSVPLPTEDWSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y497</accession>
    <name>R6Y497_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01992</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30788">
        <property type="protein sequence ID" value="CDD30788"/>
        <property type="gene ID" value="BN815_01992"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="95" mass="10687" checksum="CC129C335B2A4146" modified="2013-07-24" version="1">MIYLTDKLAVTEGSECYMVGRPVETVQESGGKRCKAPKLRSPRYYSTMAQAVRGAVSTTLRQKVAANEITSLQEFIRQEQALQTEFTKKLEVLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4B1</accession>
    <name>R6Y4B1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8 9">Translation initiation factor IF-2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">infB</name>
        <name evidence="12" type="ORF">BN815_00157</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8 9">One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 9">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30808">
        <property type="protein sequence ID" value="CDD30808"/>
        <property type="gene ID" value="BN815_00157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03702">
        <property type="entry name" value="IF2_mtIF2_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10050">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00100_B">
        <property type="entry name" value="IF_2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044145">
        <property type="entry name" value="IF2_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006847">
        <property type="entry name" value="IF2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000178">
        <property type="entry name" value="TF_IF2_bacterial-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015760">
        <property type="entry name" value="TIF_IF2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023115">
        <property type="entry name" value="TIF_IF2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036925">
        <property type="entry name" value="TIF_IF2_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43381">
        <property type="entry name" value="PTHR43381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11987">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04760">
        <property type="entry name" value="IF2_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52156">
        <property type="entry name" value="SSF52156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00487">
        <property type="entry name" value="IF-2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 8 9" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="11">
        <location>
            <begin position="287"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="66"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="region of interest" description="G-domain" evidence="8">
        <location>
            <begin position="290"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="108"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="296"/>
            <end position="303"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="342"/>
            <end position="346"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="396"/>
            <end position="399"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="785" mass="87106" checksum="9B6CD7B1F5C794E8" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4I1</accession>
    <name>R6Y4I1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000334">
        <property type="protein sequence ID" value="CDD30863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30863">
        <property type="protein sequence ID" value="CDD30863"/>
        <property type="gene ID" value="BN815_00005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13758" checksum="393CFC7A47B9C449" modified="2013-07-24" version="1">MKEVGKRLKALRESIGLSQVKMAEAIGSTQSSINRYENGQSTPSVELFRRYADYFDVSLDYIFARTDKPQGVIYEFKPKAAPEREEMRRFIEMCFDPQSPMNEKLKETLFRMMEENR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4Y6</accession>
    <name>R6Y4Y6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02142</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000354">
        <property type="protein sequence ID" value="CDD30983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30983">
        <property type="protein sequence ID" value="CDD30983"/>
        <property type="gene ID" value="BN815_02142"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="2">
        <location>
            <begin position="4"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="40372" checksum="CB4853F74685441C" modified="2013-07-24" version="1">MEHYLDNSATTQVLRPVAERALELMVEEYGNPSSLHTRGFRARQRVEEARALVAQRLGAQAEEITFTSGGTEANNLALFGAAQARKRLGNKIVTTAAEHDSVLNPCRELEKLGFEVVYVKPDNSGHLPPEALAAAIDQNTILVSCMLVNNETGAIFPVEEAARAIRRSKAPALLHVDAVQAFGKLPFTVKKLGADLLTLSGHKLHAPKGVGALYVKKGTRLLPRTLGGGQERGLRSGTESVPLIGALGEAVRLLPPAGEALEHIQKLNSLLRQELAQLPGVVLHSPEDALPYVLNFSAGKVRGETMLHFLAQREVYVSSGSACGKAKPSHVLESMGLPKEQVQSALRVSFSRFSTEEDVGALVEGLKEGLAQLAVGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y565</accession>
    <name>R6Y565_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">4-hydroxy-3-methylbut-2-enyl diphosphate reductase</fullName>
            <shortName evidence="5">HMBPP reductase</shortName>
            <ecNumber evidence="5">1.17.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ispH</name>
        <name evidence="8" type="ORF">BN815_02221</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + isopentenyl diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24488"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="ChEBI" id="CHEBI:128769"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>dimethylallyl diphosphate + H2O + 2 oxidized [2Fe-2S]-[ferredoxin] = (2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + 2 reduced [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24825"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57623"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from (2E)-4-hydroxy-3-methylbutenyl diphosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the IspH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.4" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000371">
        <property type="protein sequence ID" value="CDD31068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31068">
        <property type="protein sequence ID" value="CDD31068"/>
        <property type="gene ID" value="BN815_02221"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00097"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00059">
        <property type="reaction ID" value="UER00105"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051745">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050992">
        <property type="term" value="P:dimethylallyl diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13944">
        <property type="entry name" value="lytB_ispH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00191">
        <property type="entry name" value="IspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003451">
        <property type="entry name" value="LytB/IspH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02401">
        <property type="entry name" value="LYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00681">
        <property type="entry name" value="RIBOSOMALS1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00216">
        <property type="entry name" value="ispH_lytB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="301"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="388"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="475"/>
            <end position="543"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="7">
        <location>
            <begin position="560"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="223"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="638"/>
            <end position="667"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00191"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="667" mass="73263" checksum="3F1BEAE9073291A8" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y585</accession>
    <name>R6Y585_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02251</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000377">
        <property type="protein sequence ID" value="CDD31098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31098">
        <property type="protein sequence ID" value="CDD31098"/>
        <property type="gene ID" value="BN815_02251"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004559">
        <property type="term" value="F:alpha-mannosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006013">
        <property type="term" value="P:mannose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041147">
        <property type="entry name" value="GH38_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011682">
        <property type="entry name" value="Glyco_hydro_38_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17677">
        <property type="entry name" value="Glyco_hydro38C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07748">
        <property type="entry name" value="Glyco_hydro_38C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_38C" evidence="1">
        <location>
            <begin position="35"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro38C2" evidence="2">
        <location>
            <begin position="296"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="370" mass="42134" checksum="09C6CF0A060FF253" modified="2013-07-24" version="1">MALLPLPALNTVKLLVKDGPAPEAPACATLLEHGLETALLRLEWDENGQLTSIYDKREDRELVPQGRKANAITLYEDRPRNYDAWELEYSHRRKGWGIGAPTAVTVVENNALRAVVEFRYQFGKSQLVQRMTAYAHTARVDFSTWVDWQERELVMKADFPVDIHSNRARFDIQFGSMERPTTKNTSWEFAKFESVGHKWADYAEPGYGAALLNDCKYGYDIHDGVMSLTLLKASNRPDDHADQGAHTFTYALFPHSGEWYQAAVDQEAWELNDPPLVFQGETAPLGGLWQGDVPGVTFDAMKVAEDGGALILRFHEKEGRHARVSFQADFQFQSWCPCNLLERQEGQPHTQRELSFTLRPFELKTIKFKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5E9</accession>
    <name>R6Y5E9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cyclophil_like2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02312</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31168">
        <property type="protein sequence ID" value="CDD31168"/>
        <property type="gene ID" value="BN815_02312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041183">
        <property type="entry name" value="Cyclophilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18050">
        <property type="entry name" value="Cyclophil_like2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425083" description="Cyclophil_like2 domain-containing protein" evidence="2">
        <location>
            <begin position="28"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="Cyclophil_like2" evidence="3">
        <location>
            <begin position="78"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="25"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="190" mass="19524" checksum="A65F4F51176F7B40" modified="2013-07-24" version="1">MKKHMLPLLLAAFFALSLTACNTQETGSSSQLESAQGSSQLSSAPSPSPSQVEAPSSSPDAREGDSQPSAPEETLLQIAVGGETFLADLADTAAAQELASMLPISLVMADQNGVVKRYDLPSALPEAAEDFSTVPAGQLVLEGTGGLRLFYQESPAGGSYTPLATLRETEGLAQALAGESVEVTLQLVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y614</accession>
    <name>R6Y614_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00314</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31383">
        <property type="protein sequence ID" value="CDD31383"/>
        <property type="gene ID" value="BN815_00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="2">
        <location>
            <begin position="42"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S9" evidence="1">
        <location>
            <begin position="178"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="270" mass="29965" checksum="D69EE6C321C72AF0" modified="2013-07-24" version="1">MELVHFQPIPGSDGHVTGYLHTPITEMAVRRESFPTVVLCPGGAYIGCSLREADPVALRFFARGYQVFTLIYSTGEKAKDFQPLKELSETFRLIREKAADYWVDPERMAVCGFSAGGHLAASLGTLWNDPEFLKHYDNHGGQNRPNAMVLCYPVITADEHAHVMSLCNVSGCQPGTPGYEYFSLDKHVSQDTCPAFLWHTMEDDCVPVENSLKMLAALHNAGVPAEAHFFPHGGHGMSVCTQETGSPDAYNARWMDLCLDWLDNTFGYQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6K1</accession>
    <name>R6Y6K1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000428">
        <property type="protein sequence ID" value="CDD31573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31573">
        <property type="protein sequence ID" value="CDD31573"/>
        <property type="gene ID" value="BN815_00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="149" mass="17379" checksum="CF4D9046AC0E5177" modified="2013-07-24" version="1">MRAPFQVLVIPYRWEGDSLRYCVFHRSDWDQWQFVSGGGEDEETPQEAAKREAWEEACIQSSQWTALKSLCSIPAEAFSEECRRHWERGTYVVPEYAFGVACQEDITLSPEHTECVWLPYDEATKKLTWDSNRTALYELDCRMKELAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6T5</accession>
    <name>R6Y6T5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Malonyl CoA-acyl carrier protein transacylase</fullName>
            <ecNumber evidence="3">2.3.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00438</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>holo-[ACP] + malonyl-CoA = CoA + malonyl-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:41792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="EC" id="2.3.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the fabD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.39" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000441">
        <property type="protein sequence ID" value="CDD31678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31678">
        <property type="protein sequence ID" value="CDD31678"/>
        <property type="gene ID" value="BN815_00438"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004314">
        <property type="term" value="F:[acyl-carrier-protein] S-malonyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024925">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004410">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc_FabD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000446">
        <property type="entry name" value="Mct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00128">
        <property type="entry name" value="fabD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="5">
        <location>
            <begin position="7"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000446-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31678.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="306" mass="32356" checksum="3EC2227759C8F093" modified="2013-07-24" version="1">MGKIAFVFAGQGAQYSGMGQSLCEMSPAARAVFDVADKLRPGTSQQCFTAPVEELSITENTQPCLYCVDLAAAKALEEAGVRADVAAGFSLGEIAALSFAGVFTPEQGFDFVCKRGRAMQAAGEANPGAMAAVLKLSNEQVEALCAGFEKVWPVNYNCPGQLVCAGEKSQIEAFCQKVEEAGGRAKMLAVSGGFHSPFMESASQVLAQELAGMELAPSKVPVYANYTARPYDIAAKELLVNQVKNPVRWQETVERLAQLGVDTFIECGPGKTLCGLIRKTVKGATVLNVQDAETLRAAVEAIKARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6X5</accession>
    <name>R6Y6X5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ABC transmembrane type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00452</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000445">
        <property type="protein sequence ID" value="CDD31723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31723">
        <property type="protein sequence ID" value="CDD31723"/>
        <property type="gene ID" value="BN815_00452"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="88"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="223"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="273"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="84"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="307" mass="33845" checksum="36EEC110898191D2" modified="2013-07-24" version="1">MTYSKAAASVAVEQTELKAKRKLPVWVIYLLPSLLIFLLFTIYPFVKTFITSFFATSTTGAMTKFVGVQNYIDLFTNANYLQSLGTTFLYTLLTVPLTVIISLLLAVLSASNLPGMGVFRTIFSSTMGISVAAGSVFWNLLFHPTAGLLNQIVTAFGGKPIGWLTDTHYAIFAISAVSIWMNIGFSYLVLMGGIKNIDDSHYESVEIVGGGFFYRLRKVTIPLVSPSLFFVFTTSLINAFQSFGLIDMLTSGGPNNTTNLMVYKLYQDAFVNYRFGSASAQGIVLFVLILLISQLQTKLTERLVTYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6Z4</accession>
    <name>R6Y6Z4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dnaJ</name>
        <name evidence="10" type="ORF">BN815_00456</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the DnaJ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000446">
        <property type="protein sequence ID" value="CDD31738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31738">
        <property type="protein sequence ID" value="CDD31738"/>
        <property type="gene ID" value="BN815_00456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02349">
        <property type="entry name" value="DnaJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 6" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="4 6 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="J" evidence="8">
        <location>
            <begin position="6"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="CR-type" evidence="9">
        <location>
            <begin position="139"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="152"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="169"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="195"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif" evidence="6">
        <location>
            <begin position="209"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="7">
        <location>
            <begin position="139"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="381" mass="41160" checksum="4EE2151E9D54AE0D" modified="2013-07-24" version="1">MADKRDYYEVLGVAKGASEDEIKKAYRQLAKKYHPDLNPGDKDAEAKFKEVNEAYEVLSDKDKRARYDQFGHAGVDPNFGGGAGGGSPFQGGFDFTDIFDSFFGGGFGGGARRANPNAPRRGSDVQANIAISFEEAAKGCKKTVTYSQIDTCDQCHGTGAAAGTSPKTCEHCHGTGQVRISQRTPFGVVQSSQTCDRCGGTGKIVETPCKTCDGKGRVRRHKSIEVTVPAGIDDEQILNVGGKGNAGVNGGPNGDLHVYVSVRPHPLFERRGNDVWCEMPITFTQAALGADVEVPTLDGKVSYHVHEGTQPGDVFRLKGKGIQGLGSRMRGDQYVQVTVEVPRNLSKRQKEILAELDKASDDKNYAKRKSFFGKLKDLFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6Z5</accession>
    <name>R6Y6Z5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase M23 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00093</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29645">
        <property type="protein sequence ID" value="CDD29645"/>
        <property type="gene ID" value="BN815_00093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437147" evidence="3">
        <location>
            <begin position="28"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="4">
        <location>
            <begin position="323"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="247"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="23"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="266"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="46166" checksum="07DED8BDD41B4E7F" modified="2013-07-24" version="1">MRRICKRVGCCLFALWLAALAPLAVSAQSLEEIQAQQEQLQAENQQLQTQLDSLREDQAQKQAYLETLQEQISLVQEQILTTRENIQDLNESIGQLTLKLEASQAEVQDTIDLFKQRLVALYTAGNVSTLEILLDSKSLSDFTTRMELIDTMALRDQEIIGKLEDYMAKTQADREQLEAQKQEVASLQVTLEGKEKELAALYEENQAALGDIQGQVYATENQLQVNEEELAESERLVQEAIAAQKRAEEEAKKQAQAAAPPAAVETPSSGENSGGENGSGNGDGGSGAVSPPAPSGGGSSGFDPIWPLPGVTYISDHFGGARGHKGMDIAGPWGTPIVAAADGQVIEANATDSWGYSWGYYVLIYHNGTYSTRYAHMSSVAVSTGQYVTAGTIIGYEGNTGNSFGAHLHFEVYENGTRVNPARFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y737</accession>
    <name>R6Y737_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">L-ribulose-5-phosphate 4-epimerase</fullName>
            <ecNumber evidence="4">5.1.3.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Phosphoribulose isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00474</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:22368"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58226"/>
            <dbReference type="EC" id="5.1.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldolase class II family. AraD/FucA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.4" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31778">
        <property type="protein sequence ID" value="CDD31778"/>
        <property type="gene ID" value="BN815_00474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008742">
        <property type="term" value="F:L-ribulose-phosphate 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019572">
        <property type="term" value="P:L-arabinose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004661">
        <property type="entry name" value="AraD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00760">
        <property type="entry name" value="araD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="6">
        <location>
            <begin position="7"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00032206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="25982" checksum="EDBCE6B0C258325B" modified="2013-07-24" version="1">MLEQLKEQVYQANMLLPAHHLVTFTWGNVSGIDRESGIMAIKPSGVEYDQLSPEDMVLVDIRTGKKVEGKWNPSSDTDTHCELYRSFENIGGVVHTHSRWATIFSQMGRGVPALGTTHGDYFYGEIPCTRKMTPEEIAGEYELETGKVIVETFQGKSPDDIPAVLVHSHGPFAWGTDAMNAVHNAVVLEEVSFMAWHSLLLEPALPAMQQELLDKHYLRKHGANAYYGQGNVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7K6</accession>
    <name>R6Y7K6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00563</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000029">
        <property type="protein sequence ID" value="CDD27279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27279">
        <property type="protein sequence ID" value="CDD27279"/>
        <property type="gene ID" value="BN815_00563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011045">
        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50974">
        <property type="entry name" value="SSF50974"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425311" evidence="1">
        <location>
            <begin position="27"/>
            <end position="759"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="573"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="634"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="700"/>
            <end position="759"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="759" mass="80350" checksum="BFCD2A32A555C557" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8I3</accession>
    <name>R6Y8I3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01478</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30235">
        <property type="protein sequence ID" value="CDD30235"/>
        <property type="gene ID" value="BN815_01478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023821">
        <property type="entry name" value="rSAM_TatD-assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01111">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04038">
        <property type="entry name" value="tatD_link_rSAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="5">
        <location>
            <begin position="12"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="23813" checksum="5781E702813C6C46" modified="2013-07-24" version="1">MEQNKYGAAITYEYEQNLYINMTNQCCNSCDFCLRNNSAGSLYADNLWYQNGEPTKEEIWEELCRYDLHRFHELVFCGYGEPACRWDDMMWLCDKIKENGSHFIRINTNGLADLITGRNAALELDGKVDAVSVSLNASTAEGYEAICHSQYGLQAFPAILKFTSTAVFNVPHVRMTVVSTMPKEEIDDCKRVCEKIGADFFVREYIDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y905</accession>
    <name>R6Y905_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01621</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30400">
        <property type="protein sequence ID" value="CDD30400"/>
        <property type="gene ID" value="BN815_01621"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="5"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="139"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="384" mass="42554" checksum="B09A4FE77DCA73F3" modified="2013-07-24" version="1">MTKVRLGIIGVGNMGSGHAANILAGKCPEIELTAVADRREARRQWAKETLPEGTAIFEEGSDLIQSGLCDAVHICTPHYQHPTLAMEAFAAGLHVMCEKPAGVYTKAVREMNEAAEKSGKVFAMMFNQRTNCVYRKMHEMVHSGQLGELKRVNWIITDWYRTQIYYDSGDWRATWEGEGGGVLLNQCPHQLDLLQWICGLPKTVQAFCQEGKWHDIEVEDDVTAYLQFANGATGVFVTTTGDAPGTNRFEVTGTLGKLVCENDKLTFWKLAQDEREFCRTATEGFAQPQCQQVEVETDGENLQHVGVLNAFAGKILHGTPLVAEGTEGLGGLTLSNAMHLSSWLGRAVDIPFDEELFLSELNKRRATSRKKESKDITFSTEGTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9D1</accession>
    <name>R6Y9D1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01716</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000266">
        <property type="protein sequence ID" value="CDD30500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30500">
        <property type="protein sequence ID" value="CDD30500"/>
        <property type="gene ID" value="BN815_01716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044060">
        <property type="entry name" value="Bacterial_rp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036179">
        <property type="entry name" value="Ig-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003599">
        <property type="entry name" value="Ig_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18998">
        <property type="entry name" value="Flg_new_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00409">
        <property type="entry name" value="IG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48726">
        <property type="entry name" value="SSF48726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425342" evidence="1">
        <location>
            <begin position="17"/>
            <end position="697"/>
        </location>
    </feature>
    <feature type="domain" description="Ig-like" evidence="2">
        <location>
            <begin position="317"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="509"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="572"/>
            <end position="635"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="638"/>
            <end position="697"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="697" mass="72538" checksum="E99474F83054B467" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9H0</accession>
    <name>R6Y9H0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30530">
        <property type="protein sequence ID" value="CDD30530"/>
        <property type="gene ID" value="BN815_01743"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016861">
        <property type="term" value="F:intramolecular oxidoreductase activity, interconverting aldoses and ketoses"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009015">
        <property type="entry name" value="Fucose_isomerase_N/cen_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53743">
        <property type="entry name" value="SSF53743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="138" mass="14862" checksum="0BC82C4BA77AFA65" modified="2013-07-24" version="1">MKGTEIKLGYAPTRRSIFSAPDAIKYRGLTKDRLLELGVSFVDIDGINPEGLLYDDKDVAPILEKFRKEQVDGLFVPHCNFGTEYVVARLARELGVPVLLWGPGTSGRTRTACACGTASAACSPQARCCGGSRCPLPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9T5</accession>
    <name>R6Y9T5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000299">
        <property type="protein sequence ID" value="CDD30670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30670">
        <property type="protein sequence ID" value="CDD30670"/>
        <property type="gene ID" value="BN815_01877"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="115" mass="12025" checksum="A95B28F784CF7DE4" modified="2013-07-24" version="1">MPFSSSGMGSKAKWEPGFLAQAKMVLLALVMVTAKLTRVGGTSSCSKEPDMLSLPPMEGSPMPSWASKAPSSAAAGLPQRVGTSWSRSKYSWKVSRAFKGSAPTAASLERLSTTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA83</accession>
    <name>R6YA83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02022</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000330">
        <property type="protein sequence ID" value="CDD30835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30835">
        <property type="protein sequence ID" value="CDD30835"/>
        <property type="gene ID" value="BN815_02022"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13191" checksum="6B4006AA77778665" modified="2013-07-24" version="1">MNTSSKMLRAMVVPKAMPRHTLMLRFTRAYCWAPKFCPTKVVMAMPKALITIQMKPSILPMAAQEAMASVPKELMLACTTRLDTEYSTDCIPAGRPMRITFFNMLLSKRMRLSSTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAL2</accession>
    <name>R6YAL2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glycoside hydrolase family 35</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02114</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the glycosyl hydrolase 35 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30955">
        <property type="protein sequence ID" value="CDD30955"/>
        <property type="gene ID" value="BN815_02114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031330">
        <property type="entry name" value="Gly_Hdrlase_35_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001944">
        <property type="entry name" value="Glycoside_Hdrlase_35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23421">
        <property type="entry name" value="PTHR23421"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01301">
        <property type="entry name" value="Glyco_hydro_35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00742">
        <property type="entry name" value="GLHYDRLASE35"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_35" evidence="5">
        <location>
            <begin position="39"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="685" mass="76839" checksum="84D906366EED779A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAU8</accession>
    <name>R6YAU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02164</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000358">
        <property type="protein sequence ID" value="CDD31010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31010">
        <property type="protein sequence ID" value="CDD31010"/>
        <property type="gene ID" value="BN815_02164"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="268" mass="30877" checksum="3CA9528DF56CF863" modified="2013-07-24" version="1">MGVRKYRRGILLAIKGAGFISNKLLNSNMTLDFAYTLYLILASTPEIPKDQIKRFVQKWFVLSTLTSRYTASPESQMHRDMQSIEEKGFLNFFAEIEASALSESFWRVTLPQNLETSSVNSPGFRAFLAAQVYCHSDSLFMNGMEVRDLLLIAGDIHHIFPRAYLKKQGIDNRARYNQVANYIYLDTQVNKAIGDQAPCEYFGKVIQQCETKAPVLGNVVDTELLKRNLDENCIPQAIHQMDFTNYEEFLSQRRYLMAAKMEEYYRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAX1</accession>
    <name>R6YAX1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase GNAT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000088">
        <property type="protein sequence ID" value="CDD28414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28414">
        <property type="protein sequence ID" value="CDD28414"/>
        <property type="gene ID" value="BN815_00845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="160"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="323" mass="35882" checksum="2210CF1F89157A68" modified="2013-07-24" version="1">MARYVASRQRDERLLPVADEEALYQGEVFYFTCIGGREELLPAYETLRQDKALSVLLQEEIYQPGEFWLEVMSAAATKAQAAAWLKERLGCQRMTAFGDGLNDIPLLEEADVRCAVANAVPQLRQAAGQVIPANTEDGVARFLLADTAPTLALGERAGDFRLRLYRPQDLEGLIQLFYETVHEVNLGDYSPAEVDAWVPSPESVDRAAWGESLAAHYTVVAEREGQLLGFGDMDSTGYFDRLYVHRDFQGRGVATAIAHALEGFAHGLGAQRVTVHASRTARPFFERRGYRMLYAQQVERRGVLLENFAMELALEGGEGHGSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB01</accession>
    <name>R6YB01_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Elongation factor 4</fullName>
            <shortName evidence="6">EF-4</shortName>
            <ecNumber evidence="6">3.6.5.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Ribosomal back-translocase LepA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lepA</name>
        <name evidence="8" type="ORF">BN815_02213</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.n1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
            <orientation evidence="6">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.n1" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000369">
        <property type="protein sequence ID" value="CDD31060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31060">
        <property type="protein sequence ID" value="CDD31060"/>
        <property type="gene ID" value="BN815_02213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03709">
        <property type="entry name" value="lepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00071">
        <property type="entry name" value="LepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006297">
        <property type="entry name" value="EF-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038363">
        <property type="entry name" value="LepA_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013842">
        <property type="entry name" value="LepA_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035654">
        <property type="entry name" value="LepA_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43512">
        <property type="entry name" value="PTHR43512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06421">
        <property type="entry name" value="LepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01393">
        <property type="entry name" value="lepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="4 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="4"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="16"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="133"/>
            <end position="136"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="600" mass="67120" checksum="89D085468609D65F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB64</accession>
    <name>R6YB64_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Signal peptidase I</fullName>
            <ecNumber evidence="4 6">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02279</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="4 6"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31135">
        <property type="protein sequence ID" value="CDD31135"/>
        <property type="gene ID" value="BN815_02279"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="7">
        <location>
            <begin position="23"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="20955" checksum="00A4A51E9DE1EB70" modified="2013-07-24" version="1">MEEIARPQKEKPLGGSPFARSVLDWTETIVMAVVLVAVVFTFLARVITVDGRSMEPTYHNGDRVLVTNLAGAPQQGDVVIVINALEEPIIKRVVATEGQTVDFDPVLGEVLVDGVTLPGSVFGIEDGITFVPDVPGQVLEFPQTVPEGCVFVLGDNRGHSTDSRFQSVGMVDQRNILGKVVFNIYPFSNLGFVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB77</accession>
    <name>R6YB77_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">33 kDa chaperonin</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Heat shock protein 33 homolog</fullName>
            <shortName evidence="6">HSP33</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hslO</name>
        <name evidence="7" type="ORF">BN815_02294</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Under oxidizing conditions two disulfide bonds are formed involving the reactive cysteines. Under reducing conditions zinc is bound to the reactive cysteines and the protein is inactive.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the HSP33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31150">
        <property type="protein sequence ID" value="CDD31150"/>
        <property type="gene ID" value="BN815_02294"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00498">
        <property type="entry name" value="Hsp33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.30.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00117">
        <property type="entry name" value="HslO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000397">
        <property type="entry name" value="Heat_shock_Hsp33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016154">
        <property type="entry name" value="Heat_shock_Hsp33_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016153">
        <property type="entry name" value="Heat_shock_Hsp33_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30111">
        <property type="entry name" value="PTHR30111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01430">
        <property type="entry name" value="HSP33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005261">
        <property type="entry name" value="Heat_shock_Hsp33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118352">
        <property type="entry name" value="SSF118352"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64397">
        <property type="entry name" value="SSF64397"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="5 6" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0862">Zinc</keyword>
    <feature type="disulfide bond" description="Redox-active" evidence="6">
        <location>
            <begin position="238"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="6">
        <location>
            <begin position="272"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="31828" checksum="1BA14BF9FA217A2D" modified="2013-07-24" version="1">MDKILRTITSDGSLMASAIDSSQIVYTAQKIHGLTKTSCAALGRLLTGASLMGNMLKTDGASLTLKVNGGGPLGNLVAISDSHGNVRGYVDFPEVELPLKPNGKIDVGGGVGDQGRLAVIRDLGEGDPYVGQVELVSGEIAEDLTNYYASSEQVPTVCALGVLVDKESGEAMLSGGLLIQALPGADNAALDRLEQNIAQLDSVTTMLAKGMGPEEMCRAALEGFEVEILDQAPVYYACNCSKERFARGLLTLGAKELLSLHGDEREQVETVCHYCNKKYVFTKAEIAELAKQAAKTGKKVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB87</accession>
    <name>R6YB87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02309</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31165">
        <property type="protein sequence ID" value="CDD31165"/>
        <property type="gene ID" value="BN815_02309"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003735">
        <property type="entry name" value="Metal_Tscrpt_repr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038390">
        <property type="entry name" value="Metal_Tscrpt_repr_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33677">
        <property type="entry name" value="PTHR33677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02583">
        <property type="entry name" value="Trns_repr_metal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11926" checksum="6531757D55243F0D" modified="2013-07-24" version="1">MSNAMQDTGGACCHHHKATPRSEQELRLLQNRLKRMMGQLNGISKMLDENRYCGDILIQVAAVESALQSFGYLVLQDHLETCVVEEIQKGNTQIVDEAVELIKKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBD7</accession>
    <name>R6YBD7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">60Kd inner membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00868</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the OXA1/ALB3/YidC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28529">
        <property type="protein sequence ID" value="CDD28529"/>
        <property type="gene ID" value="BN815_00868"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032977">
        <property type="term" value="F:membrane insertase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028055">
        <property type="entry name" value="Membr_insert_YidC/Oxa1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001708">
        <property type="entry name" value="YidC/ALB3/OXA1/COX18"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12428">
        <property type="entry name" value="PTHR12428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02096">
        <property type="entry name" value="60KD_IMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03592">
        <property type="entry name" value="yidC_oxa1_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="29"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="203"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="242"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="317"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="348"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="362" mass="40317" checksum="94AF01F668AF66FC" modified="2013-07-24" version="1">MMAIFNFFGSILGYLLWFLYNIFHNYGVAIIFFTIIIKAVLFPFSVKSQRSMASQTKLADKQKELQAKYGNNKQKYNEELMKLYEKEGVNPSSGCLTTLLPLPIMLGIYYSVIMPLSNTLHIASERIAEATDFINRIPGMVASATSGGIYSEMEIIRNFDALKDHLTMFTPEDLDKIESFTQGFHFLGLDLLATPQSGGFLDFLWVIPALSLISSFGYQMYMSHYQKVHNGQTQPGCMKAMMYFLPLISVYWAWIMPSAVGLYWVISSVTSFLQSLITNKYFSIDHMIARGEAQRAVTLELAEAKARPLPAATQKEIAEKLAAAPQQQKLEKGGGKKQQGGKKKKGGSGGSGNSSAYMGTKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBS3</accession>
    <name>R6YBS3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000418">
        <property type="protein sequence ID" value="CDD31375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31375">
        <property type="protein sequence ID" value="CDD31375"/>
        <property type="gene ID" value="BN815_00013"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="18465" checksum="D77367DABD048D2D" modified="2013-07-24" version="1">MAIGERIHFFRLLRGMTQKYLGMALGFPEKSADVRLAQYETGARTPKADLTAALAQVLDVSPHALSVPDIDSYVGLMHTLFTLEDNYGLKISEMDGEVCLKVDVRKNKDAARLHEMLCSWQQTAAMLEAGEISKEDYDKWRYRYPEFDKAQNYVKVPPQDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBT9</accession>
    <name>R6YBT9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31390">
        <property type="protein sequence ID" value="CDD31390"/>
        <property type="gene ID" value="BN815_00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="18696" checksum="E1217949DD5FF268" modified="2013-07-24" version="1">MGRKTQVKCKGDEARFEEVARFVYERFGNSVHYIADVAGGQGMLSRILNKKYNYQAEVIDPRHYQVVGVQNRQCEYVSDMASYYDLVIGLHPDEAVREVVESAKVRPVLVVPCCNFWDRTRKLGTKEMVADICKWLEENGIRYETVTFSFKGPKNIGILTYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBU5</accession>
    <name>R6YBU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00326</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TMEM86 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31395">
        <property type="protein sequence ID" value="CDD31395"/>
        <property type="gene ID" value="BN815_00326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012506">
        <property type="entry name" value="YhhN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07947">
        <property type="entry name" value="YhhN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="165"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="23971" checksum="BEFB67239F50316D" modified="2013-07-24" version="1">MKLFLIYSCIAIPVWVAQFALYFFLRSAGRMKESLVAKCAGSFLAVGSAALAMAAFPQGPGTPWAFWFFVLCTIADALLEISFVPGMLVFGAGHVCLIAWLWGLATPSWWSLALWVAVYILTALLFRKELPTLGKLTAPFLLYPALLGGSLALGLPLVFLLGWEWWPVALGTLLFYISDMLVAKNQLAHWDDTWQKPIMALYWAALYLISMGLWVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEY5</accession>
    <name>R6YEY5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase Gfo/Idh/MocA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01300</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29914">
        <property type="protein sequence ID" value="CDD29914"/>
        <property type="gene ID" value="BN815_01300"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="7"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="166"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="374" mass="41918" checksum="1A84644887CEF4E5" modified="2013-07-24" version="1">MIDGKVAVAVVGCGGMGGGHAVAIATGSGQALWMTDGSKGRELLPGDTDLTTKMVLAGTYDIKEDRQEWARKQGFFTYNSFEDILADERVDVVLVATPNDDHKELSIRAMRAGKNVLCEKPVMMNSKDLEDVLEVAKETGKVFYPRQNRRWDKDYLTMKKVYDEKLIGNVFHIESRYHGSRGIPGDWRGIKEKGGGMMFDWGVHLLDRIVLMVPEKIKKVYAKMTHVTNDEVDDGFIMNMVFESGITATVEVGTCNFITLPHWYLCGDQGTAEIKDFRDPGRMVVLRSWEDKDATPILMGEGLSKTMAPRNPDSVDELPLPDFSYDRNELYSNVCDVVMGKAEQIVKNEEALRVLRLMEAALKSDEKGIVVDFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFB2</accession>
    <name>R6YFB2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histidinol phosphate phosphatase HisJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00568</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27296">
        <property type="protein sequence ID" value="CDD27296"/>
        <property type="gene ID" value="BN815_00568"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="112" mass="12662" checksum="682BDA824EECF729" modified="2013-07-24" version="1">MRYIQGDHAIPVDLSRHSDAIDTIFRALRDSGKALEVNTSGYRQKIGRPLPDLPLVRRYRELGGELITLGSDAHSTADLGRGIQEGMEMLREAGFRYFALYEQHKPILLPLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFM1</accession>
    <name>R6YFM1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00613</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27391">
        <property type="protein sequence ID" value="CDD27391"/>
        <property type="gene ID" value="BN815_00613"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="80" mass="8975" checksum="26706157DF8EDF62" modified="2013-07-24" version="1">MNINTKNIVSITEANQNFSKVARLVDGNGAAVILKNNVPRYLVLEFSQAEQEQSTDEESLRAISQRLIAKNRKAFRDIAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG67</accession>
    <name>R6YG67_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30349">
        <property type="protein sequence ID" value="CDD30349"/>
        <property type="gene ID" value="BN815_00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="413"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="438"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="461"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="489"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="510"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="539"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="621"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="655"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="684"/>
            <end position="704"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="714" mass="81169" checksum="EA49CDA302F0EB0D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGE3</accession>
    <name>R6YGE3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01655</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000243">
        <property type="protein sequence ID" value="CDD30434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30434">
        <property type="protein sequence ID" value="CDD30434"/>
        <property type="gene ID" value="BN815_01655"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10575" checksum="41A979F8A5535E95" modified="2013-07-24" version="1">MRTSIEPARNRIFASSPPSSMTTSASGMYFFTAVRVAYTSCTKGMCKSSARPMPAEPDTHRLARFVWGNFSWMRVSMPEAFSAIWEKCRSYSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGH0</accession>
    <name>R6YGH0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01681</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000249">
        <property type="protein sequence ID" value="CDD30464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30464">
        <property type="protein sequence ID" value="CDD30464"/>
        <property type="gene ID" value="BN815_01681"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008690">
        <property type="term" value="F:3-deoxy-manno-octulosonate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02517">
        <property type="entry name" value="CMP-KDO-Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003329">
        <property type="entry name" value="Cytidylyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004528">
        <property type="entry name" value="KdsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02348">
        <property type="entry name" value="CTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27421" checksum="ECA24C73C1640DCF" modified="2013-07-24" version="1">MRAIAIIPARYDSTRFKGKPLADLCGRPMLWWVYHQVKKARRLAEVWVATDHPAIQEACGAYQIPCKLTSPQCPTSTQRVWEAAQSLEGDVYVCVNGDEPLIDPQVIDQVVPSSTEGFFAANLMAPILSPVEAVDETNIKVVADETGRALFFSRSPIPHPKASVDYQFYKHLGVLAYTKEALAFFDSAPRGPLEAVEDINELRFIEHGKRLQMIPVQAKSLSVDTPKDLEYVRAVLREKLRKGEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGV5</accession>
    <name>R6YGV5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exodeoxyribonuclease 7 small subunit</fullName>
            <ecNumber evidence="3">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Exodeoxyribonuclease VII small subunit</fullName>
            <shortName evidence="3">Exonuclease VII small subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">xseB</name>
        <name evidence="4" type="ORF">BN815_00716</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the XseB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000062">
        <property type="protein sequence ID" value="CDD27786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27786">
        <property type="protein sequence ID" value="CDD27786"/>
        <property type="gene ID" value="BN815_00716"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.1040">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00337">
        <property type="entry name" value="Exonuc_7_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003761">
        <property type="entry name" value="Exonuc_VII_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037004">
        <property type="entry name" value="Exonuc_VII_ssu_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34137">
        <property type="entry name" value="PTHR34137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02609">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006488">
        <property type="entry name" value="Exonuc_VII_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116842">
        <property type="entry name" value="SSF116842"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01280">
        <property type="entry name" value="xseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="76" mass="8581" checksum="2C180102728D3467" modified="2013-07-24" version="1">MAAKKLKFEEAMQRLQEIVGKLESGEESLEDSMKLFQEGAKLSAQCYQMLDKAEQQVAQLTKIADSEEEEADEPDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGX7</accession>
    <name>R6YGX7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase</fullName>
            <ecNumber evidence="5">2.7.8.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Phosphatidylglycerophosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BN815_01820</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">This protein catalyzes the committed step to the synthesis of the acidic phospholipids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a CDP-1,2-diacyl-sn-glycerol + sn-glycerol 3-phosphate = 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:12593"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:60110"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="2.7.8.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Phospholipid metabolism; phosphatidylglycerol biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="16">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.5" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30609">
        <property type="protein sequence ID" value="CDD30609"/>
        <property type="gene ID" value="BN815_01820"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00084">
        <property type="reaction ID" value="UER00503"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008444">
        <property type="term" value="F:CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006655">
        <property type="term" value="P:phosphatidylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004570">
        <property type="entry name" value="Phosphatidylglycerol_P_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000847">
        <property type="entry name" value="Phos_ph_gly_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00560">
        <property type="entry name" value="pgsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="12 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="14" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 16 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="9 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="72"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00014944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00033018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD30609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="20501" checksum="F40B52E6F505177B" modified="2013-07-24" version="1">MNLPNKLTVLRIVMVPFFVFFMLGSFVPHRYLWALLLFCAASYTDHLDGKIARRDNLITNFGKLMDPLADKILVMSALICLVKLDLASTVCVLLIMIREFAITSIRLLAVEQGRVIAANNWGKLKTVSQMVAIIAILLMQYIGAFVPAALPAMTVAGHVLIVIATFFTVVSGIIYIKDNRDVMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHH1</accession>
    <name>R6YHH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LysM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02026</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000331">
        <property type="protein sequence ID" value="CDD30839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30839">
        <property type="protein sequence ID" value="CDD30839"/>
        <property type="gene ID" value="BN815_02026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009826">
        <property type="entry name" value="DNA_circ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07157">
        <property type="entry name" value="DNA_circ_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_circ_N" evidence="1">
        <location>
            <begin position="25"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="19154" checksum="CFF155A60054C2CE" modified="2013-07-24" version="1">MRLMGMRFKDFTWKDNPVSLRVAHARRVGEVNVPYGESKAEELGPQRRNVTGEGYFAGEDCMEAWAGLQRAFSQKGPGLLQLPGVEPFWALMDSLELVGAQGKDLVRYTFSFTEWEGRGAYAGSGTYCAQAGESLWQYSNRWGLSIEKLVEANPHIRDICALEEGEKVMLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHJ7</accession>
    <name>R6YHJ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylsulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00172</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30869">
        <property type="protein sequence ID" value="CDD30869"/>
        <property type="gene ID" value="BN815_00172"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="160"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="283"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="629" mass="70221" checksum="6B1E69CE1BBDBA72" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHK8</accession>
    <name>R6YHK8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30884">
        <property type="protein sequence ID" value="CDD30884"/>
        <property type="gene ID" value="BN815_00187"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="169" mass="18790" checksum="12FAB6E353136BAB" modified="2013-07-24" version="1">MLNENIKAIRKAKGLSQQELAVKVNVVRQTVSKWEQGLSVPDADMLLALSEALETPVSVLLGETVVEPEADTLQAISQKLEVINLQLARRKTTRRKVVRWVLISFCALLALLFAALLLVGSPYLAWDYSDPETAVLGVAFHSLEWLFVRVAPPLFLAALVGIFFTYKKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHN0</accession>
    <name>R6YHN0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Protein GrpE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">HSP-70 cofactor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">grpE</name>
        <name evidence="7" type="ORF">BN815_00741</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3 4">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 5">Belongs to the GrpE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000075">
        <property type="protein sequence ID" value="CDD28016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28016">
        <property type="protein sequence ID" value="CDD28016"/>
        <property type="gene ID" value="BN815_00741"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00446">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.22.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01151">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_coiled_coil"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009012">
        <property type="entry name" value="GrpE_head"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="PTHR21237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51064">
        <property type="entry name" value="SSF51064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="SSF58014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01071">
        <property type="entry name" value="GRPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0346">Stress response</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="20599" checksum="D6DBCE295D0E6653" modified="2013-07-24" version="1">MAKDKKKQPEQEPEAQEKEPQSPQPEEAEPKEPSAADQLEKLQKEFEEHKQQHLRVLAEYDNFRKRTLNEKTAIYNNAVSDTVKELLPIADNIERALGQENASAEDMKKGVEMIEHQIQACFEKLGLEEMGKVGEAFDPNLHNAVAHIEDEALGENVIAAVYQKGYKLGDRVVRHAMVQVAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHN1</accession>
    <name>R6YHN1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30909">
        <property type="protein sequence ID" value="CDD30909"/>
        <property type="gene ID" value="BN815_02071"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="8147" checksum="75410EBE17CF38D0" modified="2013-07-24" version="1">MFFRKKLNRVLHVKEAEERFEKDIEKTPLEKKDRLAMVLAALIVFVPAVLLVVLVFALVLYFFFFRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI35</accession>
    <name>R6YI35_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02208</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31054">
        <property type="protein sequence ID" value="CDD31054"/>
        <property type="gene ID" value="BN815_02208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="402"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="466"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="516" mass="57432" checksum="86F1BB18797D8BE4" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIR2</accession>
    <name>R6YIR2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00242</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type-I restriction system S methylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31304">
        <property type="protein sequence ID" value="CDD31304"/>
        <property type="gene ID" value="BN815_00242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.220.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000055">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044946">
        <property type="entry name" value="Restrct_endonuc_typeI_TRD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01420">
        <property type="entry name" value="Methylase_S"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0680">Restriction system</keyword>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="38"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Methylase_S" evidence="4">
        <location>
            <begin position="210"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="415" mass="46549" checksum="B2C9B88DBAAB7C1E" modified="2013-07-24" version="1">MTPAKGYTEMKDSGIQWIGQIPTHWLLKKAKYCVSITNGSDPKSEGSVPVYGSGSESFKTCGEYKEGPAVLIGRKGATLHIPHYIEGRYWNVDTAFDVKPQEDFSLRYYYYLACVFDYNYYISQTTLPGMTQTNYNNMKLPCPSLDEQSAIAAYLDTQCAKIDEIIAQAKASIEDYKQWKASIICEAVTKGLDPNVEMKDSGVEWIGKVPKEWKAIPLKVCTSKIGSGKTPQGGAETYQDNGVLFLRSQNVYNTGLELDGVYYISDEIDSTMKNSRVRYNDVLLNITGGSIGRCCLFDLPDTAANVNQHVCIIRTKPEILLPQFLRYFWNSAAGPMVIDQYQTGSNRQGLNFEQIGATHIPLCSIAEQRQIVAMLDQKCAVIDQLMAEKQSLIDDLESYKKSLIYEVVTGKRYIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ68</accession>
    <name>R6YJ68_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00358</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000424">
        <property type="protein sequence ID" value="CDD31464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31464">
        <property type="protein sequence ID" value="CDD31464"/>
        <property type="gene ID" value="BN815_00358"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025945">
        <property type="entry name" value="DHHW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14286">
        <property type="entry name" value="DHHW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="416" mass="45861" checksum="AEBA70DA018953FE" modified="2013-07-24" version="1">MRDTGYERDVYVRRTPQSRRRKKKPPILPIALVVLLLVIVLVVVLVVRGCSAQPADGGNSSANSSSQTSQVSGTDSQTSGVDSTVSGTDSSAPVSSAVSEAPTPAPQEEPQAAPETIGSLLVVGDTAYEYYNFNTDLANQYITAVADAGEKLSGISTLYDMVIPTSIDIDLPESYIDRNQLNTSDQRQAIEEYIYPSIQAMNSSVKTVSIFDTLKSHANEYLYFRTDHHWTQLGAYYAYVEFCNVRGFEPVPLDQFDRKDYTGYLGTFYSNTESSALANNPDTVEAYIPKANVTLNVTQSDGTVLENWPLIANGDEYGQNMKYLVYCGGDQPYEEITNNDMTDGPTCIVVKESFGNCFIPFLVNHYSKVYVIDYRHYTAGTVTQLAQQVGADDVLCLNNISMTRNEGLVNQFSNIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ87</accession>
    <name>R6YJ87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00362</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31479">
        <property type="protein sequence ID" value="CDD31479"/>
        <property type="gene ID" value="BN815_00362"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="190"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="32930" checksum="2055A32298B77542" modified="2013-07-24" version="1">MVNKQLREERHHGDISLPVSGYRVQPPYSAHLGELECHWHSEMELFQVERGTMQVQCGSEYFEAKAGDLVFFNSGELHAAQPIHGSELDFAAVVFSPELLCGDENDIVRRRYVAPVVEGKLLLPRVTDSSTPAGRQVVGAFQQVMDLLERRPPAYELRVRAQLLEVFAGLAGSAAQRAPQRESAPAQGIKAAIEYIQGNYRQPITVSQLAELSHMSSGHFCRLFKKYTFKTPVQYINGVRLSAATDLLLKSDRKVLDVAFDTGFNSLSYFIGVFKQSMGCTPTEFRRRHGRQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YL76</accession>
    <name>R6YL76_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0246 protein BN815_01126</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0246 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000141">
        <property type="protein sequence ID" value="CDD29331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29331">
        <property type="protein sequence ID" value="CDD29331"/>
        <property type="gene ID" value="BN815_01126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00652">
        <property type="entry name" value="UPF0246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005583">
        <property type="entry name" value="YaaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30283">
        <property type="entry name" value="PTHR30283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03883">
        <property type="entry name" value="H2O2_YaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00652"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28777" checksum="2D4C76084A22D396" modified="2013-07-24" version="1">MKLLISPAKKMRAEDFLPPRTQPPLLEKSAQLLDYVRGLSLPQLKRLLACNESLAQEAFENFRAMELGRGTTPALLAYDGIQYKYMAPGVFTQAQLEYVGEHLRILSGFYGVLRPFDGVSPYRLEMQAKVKAPFCKNLYDFWGDSLGEFLLQEDSVLVNLASEEYAKAVRPAVAGKGRFVTCVFAEEPEPGRLVEKGVYVKMARGEMVRFAAEHNVQSPEGLQGFSRLGYAFDPQRSTGDTYLFCRSAPPKRLKNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLW5</accession>
    <name>R6YLW5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SsrA-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Small protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smpB</name>
        <name evidence="4" type="ORF">BN815_01190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">The tmRNA-SmpB complex associates with stalled 70S ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SmpB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000159">
        <property type="protein sequence ID" value="CDD29536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29536">
        <property type="protein sequence ID" value="CDD29536"/>
        <property type="gene ID" value="BN815_01190"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070929">
        <property type="term" value="P:trans-translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09294">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00023">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023620">
        <property type="entry name" value="SmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000037">
        <property type="entry name" value="SsrA-bd_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020081">
        <property type="entry name" value="SsrA-bd_prot_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30308">
        <property type="entry name" value="PTHR30308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01668">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74982">
        <property type="entry name" value="SSF74982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00086">
        <property type="entry name" value="smpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01317">
        <property type="entry name" value="SSRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="17816" checksum="A7D65233017E50A2" modified="2013-07-24" version="1">MAGKANTKTIAQNKKAYHDYFVEESFEAGIELKGTEVKSLRAGRANLKDAWCSVVNGEMMLNGCHISPYDFGNIFNPDPMRVRRLLMHKKEILRLYGVVKQQGYSLIPLSLYFKDSRVKVQVGLCRGKKLYDKRADMAEKAAKRDIERTLKERNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPX3</accession>
    <name>R6YPX3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">30S ribosomal protein S15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rpsO</name>
        <name evidence="7" type="ORF">BN815_01842</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="3 6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30631">
        <property type="protein sequence ID" value="CDD30631"/>
        <property type="gene ID" value="BN815_01842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_B">
        <property type="entry name" value="Ribosomal_S15_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_S15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005290">
        <property type="entry name" value="Ribosomal_S15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="S15_NS1_RNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23321">
        <property type="entry name" value="PTHR23321"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="SSF47060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00952">
        <property type="entry name" value="S15_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="10221" checksum="10663B17C50D71A6" modified="2013-07-24" version="1">MTKTEKTEIIQKYARHEGDTGSPEVQIAVLTKRINDLTEHLRVNKKDHHSRRGLLKMVGQRRNLLNYLTKIDIERYRAIIAELGIRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQE8</accession>
    <name>R6YQE8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nitroreductase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00160</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30811">
        <property type="protein sequence ID" value="CDD30811"/>
        <property type="gene ID" value="BN815_00160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020051">
        <property type="entry name" value="SagB-type_dehydrogenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03605">
        <property type="entry name" value="antibiot_sagB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="2">
        <location>
            <begin position="75"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="11"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="279" mass="32016" checksum="36B20E82D9D9F871" modified="2013-07-24" version="1">MDERKIQEAIQRGRDFLKSQDTAELERNGSDYKTDQELKKPQPPLVKAPMTENRIDLPRNFESLSLEDNLYQLLAKRKSSRVYTQEDMSLLQLSFLLWATQGIKSIRGKSYATIRTAPCGGARHPFETYLLVRQVEGLLPGTYHYLPMTHQLELLVPLEDKEALFALVEESLCGQRWAAKSNVVFYWSFVPYRSEWRYGIHAHRMIMADMGHVGENLYLACTALGLGTCGIGAYDQKLCDKTFQLDGEEEFTLYTQSVGTVKDEDEGKEKAFYSFVEEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQH3</accession>
    <name>R6YQH3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02018</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30831">
        <property type="protein sequence ID" value="CDD30831"/>
        <property type="gene ID" value="BN815_02018"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="4"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="147"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="44431" checksum="8527F6B690750FF3" modified="2013-07-24" version="1">MEKVRIAMIGVGAISGIYLQNITKVFREVDLVGVCDLIPERAQKGAGYVEEQIKEGAAVRQPKIYKDMYEAFNDPEVEVILNLTRPHEHYEVTKQGLLHGKHVYSEKPLAVDMDEAKELVALAEEKGLRLGGAPDTFMGAGIQTARRVIDQGLIGDVVGASCAMVCHGHETWHPDPEFYYKRGGGPMMDMGPYYVTALVQLLGPAKGVMGMTKRTFPHRTITSQPHYGEDISVDVDTYLSGNILFENGAIAQIFTTFDVYYGRGAQARFEVYGTQGTLVVPDPNTFGGPVLLLRPEDQAAAPATDPALERKKVPSFYDGYKEIPLLFDYNENSRALGLADMCKALRTGRDHRANYQQQRHVLEIMTSFSKSCQQGEYIALESGYTRTAPMKNNPMHGVLDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YR58</accession>
    <name>R6YR58_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">1,4-alpha-glucan branching enzyme GlgB</fullName>
            <ecNumber evidence="10">2.4.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Alpha-(1-&gt;4)-glucan branching enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glycogen branching enzyme</fullName>
            <shortName evidence="10">BE</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">glgB</name>
        <name evidence="14" type="ORF">BN815_02170</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>Transfers a segment of a (1-&gt;4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.</text>
            <dbReference type="EC" id="2.4.1.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.18" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31016">
        <property type="protein sequence ID" value="CDD31016"/>
        <property type="gene ID" value="BN815_02170"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003844">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102752">
        <property type="term" value="F:1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043169">
        <property type="term" value="F:cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02855">
        <property type="entry name" value="E_set_GBE_prok_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00685">
        <property type="entry name" value="GlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006048">
        <property type="entry name" value="A-amylase/branching_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037439">
        <property type="entry name" value="Branching_enzy"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006407">
        <property type="entry name" value="GlgB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044143">
        <property type="entry name" value="GlgB_N_E_set_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004193">
        <property type="entry name" value="Glyco_hydro_13_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43651">
        <property type="entry name" value="PTHR43651"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02806">
        <property type="entry name" value="Alpha-amylase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02922">
        <property type="entry name" value="CBM_48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000463">
        <property type="entry name" value="GlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00642">
        <property type="entry name" value="Aamy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01515">
        <property type="entry name" value="branching_enzym"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8 10" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="5 10" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="6 10" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aamy" evidence="13">
        <location>
            <begin position="162"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="645"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="12">
        <location>
            <begin position="674"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="10 11">
        <location>
            <position position="319"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 11">
        <location>
            <position position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000463-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="688" mass="78941" checksum="0DE0F1EBBB5B4D5D" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRD0</accession>
    <name>R6YRD0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fe-S oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31131">
        <property type="protein sequence ID" value="CDD31131"/>
        <property type="gene ID" value="BN815_02275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023862">
        <property type="entry name" value="CHP03960_rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045784">
        <property type="entry name" value="Radical_SAM_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19864">
        <property type="entry name" value="Radical_SAM_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03960">
        <property type="entry name" value="rSAM_fuse_unch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="250"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="619" mass="70931" checksum="4488560FF2245747" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRG4</accession>
    <name>R6YRG4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="14">FtsK/SpoIIIE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ORF">BN815_02320</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="8">Homohexamer. Forms a ring that surrounds DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FtsK/SpoIIIE/SftA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31176">
        <property type="protein sequence ID" value="CDD31176"/>
        <property type="gene ID" value="BN815_02320"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025199">
        <property type="entry name" value="FtsK_4TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041027">
        <property type="entry name" value="FtsK_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018541">
        <property type="entry name" value="Ftsk_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13491">
        <property type="entry name" value="FtsK_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17854">
        <property type="entry name" value="FtsK_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09397">
        <property type="entry name" value="FtsK_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00843">
        <property type="entry name" value="Ftsk_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0732">Signal</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426208" evidence="12">
        <location>
            <begin position="17"/>
            <end position="901"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="85"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="183"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="13">
        <location>
            <begin position="541"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="255"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="342"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="804"/>
            <end position="825"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="13"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="804"/>
            <end position="818"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="558"/>
            <end position="565"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="901" mass="97677" checksum="BDFCCC415C9C6316" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9X5</accession>
    <name>R6Z9X5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000029">
        <property type="protein sequence ID" value="CDD27277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27277">
        <property type="protein sequence ID" value="CDD27277"/>
        <property type="gene ID" value="BN815_00561"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="100" mass="11276" checksum="1F544EA43356DC5D" modified="2013-07-24" version="1">MSYLVMECRRSYAVLLDQEGRFVKAANLRYEVGQTVFDPVLLEEPAPKLKLLPWIGGGXXXCCPGLAAGRRGWPRLPQPWCLPSFCPCTTRRWMCTPPST</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCP7</accession>
    <name>R6ZCP7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00800</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28272">
        <property type="protein sequence ID" value="CDD28272"/>
        <property type="gene ID" value="BN815_00800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="15"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="51"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="167"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="238"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="400"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="427"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="453"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="478" mass="51091" checksum="04583E9BC7A9AC7F" modified="2013-07-24" version="1">MAAENNLGKDKVSRLVWRIAIPSMLGQFVSVLYSIVDRMYIGNIPEIGDVALAGVGVCGPVVTMVGSVAVLVGVGGAPLVSIRMGEEDLSAAKKVLANCFLMLIVFSVLLIGGILPFREPMLRLFGASDATYPFAEEYFTAYLCGTFFALAASGLNQFIICQGFAKIGMASVMLGAALNIVLDPVFIFALDMGVRGAAIATVISQAASAAFVIRFLFGKRVQVPITFGGYDVRVMGRVLVMGFTPFLIVAVDNVMIIAMNAILQRTGGADGDMLVTCNTIVQSFMLVVTMPLGGISGGTQGILGFNYGARQVDRVRQAQKYIVGLCVGYTTLLFVLARVAGPLFVRLFTQDPVLAQEAFEAIKICTLAIIPLGVQYELVDGFTGIGQVRLSLPLSFWRKLVYFVAIFALPAAFGARAAFYAEPLSDILGPAVTIVVYFLAMGKILRERAVTGPDNSRLGGPGPQWGPSRTDRAGRRDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDJ0</accession>
    <name>R6ZDJ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00884</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28582">
        <property type="protein sequence ID" value="CDD28582"/>
        <property type="gene ID" value="BN815_00884"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="38" mass="4173" checksum="D27C283379E2593F" modified="2013-07-24" version="1">MKLQRAKPALLWLWRLAVVALVNVLVYLMLAAGGPSPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDM9</accession>
    <name>R6ZDM9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00899</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28627">
        <property type="protein sequence ID" value="CDD28627"/>
        <property type="gene ID" value="BN815_00899"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024528">
        <property type="entry name" value="ThrE_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12821">
        <property type="entry name" value="ThrE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="127"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="ThrE_2" evidence="6">
        <location>
            <begin position="15"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD28627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="157" mass="17294" checksum="2B37A45E9BB7E829" modified="2013-07-24" version="1">MINVSLLLYWLLQMGVAFLSTITFAIIFHTPRKEWLCCGFTGAVGWLVYVVCVHFGLDVATASFFATLALAWFARVFAFWRKAPVTVFLITGIFPLVPGAGIYYTGYHLFMSDNSLALDKGLETIKIAVAIALGIGIVLSLPPFLFAPRKGGKEKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDZ4</accession>
    <name>R6ZDZ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ribosomal protein L11 methyltransferase</fullName>
            <shortName evidence="2">L11 Mtase</shortName>
            <ecNumber evidence="2">2.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">prmA</name>
        <name evidence="3" type="ORF">BN815_00941</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Methylates ribosomal protein L11.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-lysyl-[protein] + 3 S-adenosyl-L-methionine = 3 H(+) + N(6),N(6),N(6)-trimethyl-L-lysyl-[protein] + 3 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:54192"/>
            <dbReference type="Rhea" id="RHEA-COMP:9752"/>
            <dbReference type="Rhea" id="RHEA-COMP:13826"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29969"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61961"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the methyltransferase superfamily. PrmA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000103">
        <property type="protein sequence ID" value="CDD28747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28747">
        <property type="protein sequence ID" value="CDD28747"/>
        <property type="gene ID" value="BN815_00941"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00735">
        <property type="entry name" value="Methyltr_PrmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004498">
        <property type="entry name" value="Ribosomal_PrmA_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000401">
        <property type="entry name" value="RPL11_MTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00406">
        <property type="entry name" value="prmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="307" mass="34160" checksum="4208DE708A35EF50" modified="2013-07-24" version="1">MNENWTELKIKVPAPQADIAGAIANMVVPYGIYMEDYSHLEEEALEIAHIDLIDEELLQKDREHAIIHIYISPEANPAEAVSFLEERFQAERIPYEIDRDSCVEEDWINNWKKYFHPIPVGEKLLIRPLWEDDYDAQGRTVLHLEPGLAFGTGTHETTRLCLELLEKYVTPGIDFLDMGCGSGILSVAALLLGAKSAVGVDIDPLAVKTAVENAETNGVAERFTGICGNLAEKVTGKFQVVAANIVADIVILLSKDAPRFLTPDSTYIVSGIIDTREQDVLAAIQDTFQVIERREEKGWVAMALKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEW7</accession>
    <name>R6ZEW7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyco_trans_2-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29022">
        <property type="protein sequence ID" value="CDD29022"/>
        <property type="gene ID" value="BN815_01030"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="1">
        <location>
            <begin position="5"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="327" mass="37880" checksum="8FC4BAF112BAAE78" modified="2013-07-24" version="1">MPKATVVVPVYNVEKYLEKCVDSILAQTEPDFELLLVDDGSTDGSGRLCDKLAEKDRRVRVIHQKNQGLGGARNTGIQQAQGDWLLLVDSDDWIEPQTLEKTMEAGLREEADLVMFAYRSVDEGGRILQTYMENAPKDRGLPLEQQPTLLLTSPSACIRLYRRELLERTGILFPPRVWYEDMRTTPKLLAEARQVVYLDYVGYNYFSRTGSITKNQNAARNREIVEAFDDLLPWFQRQGLFEKYRQELCYLVVYHAYLTASVRVLLIDKKHPLLGELRAYLERWFPDWRQCPYLSRMSRAHRLLLSLLGKKRYGLVALLFQLKGRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF32</accession>
    <name>R6ZF32_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000123">
        <property type="protein sequence ID" value="CDD29097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29097">
        <property type="protein sequence ID" value="CDD29097"/>
        <property type="gene ID" value="BN815_01058"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="229" mass="26405" checksum="E41590E6FF3D367C" modified="2013-07-24" version="1">MKVTFIYHSSYFVELDHCCLLFDYYQGDIPQVGKPLYVFASHSHPDHFSPAIFQLAGEEREVHYLLSDDISPRQVPEKLRDQATFVGPRSFCQVGPLKVATLRSTDMGVAFLVQCEGKCIYHAGDLNCWVWDGAPRFQNDQMRQLYQQELELLRDKDIDVAFVPLDPRQEADFDLGMKYFFEAGGAQHVFPMHMWGDYSVVPLFKSTPTYREYAKHVMDVSQPGQSFEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFK7</accession>
    <name>R6ZFK7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01111</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000138">
        <property type="protein sequence ID" value="CDD29252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29252">
        <property type="protein sequence ID" value="CDD29252"/>
        <property type="gene ID" value="BN815_01111"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="10744" checksum="771E009364DD0CFF" modified="2013-07-24" version="1">MTPTFSRSWLMKMATQLDLEMAPASLRRAWLISRACKPTWESPISPSISARGTKAATESTTITSMALERTKASVISKACSPVSGWLTSRLSTSTPRLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGP2</accession>
    <name>R6ZGP2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator PadR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29627">
        <property type="protein sequence ID" value="CDD29627"/>
        <property type="gene ID" value="BN815_01214"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005149">
        <property type="entry name" value="Tscrpt_reg_PadR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03551">
        <property type="entry name" value="PadR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PadR" evidence="1">
        <location>
            <begin position="20"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="12704" checksum="5778A4CEFB76A323" modified="2013-07-24" version="1">MDAHIRKVYVPMTETGFYILLCLREECHGYGIVQRVEALTDGEIRLSPGTMYGSLSKMEKDGLICFVREEEKRKIYRITELGSQVLALEMKRIERLYRNMMEVRGHEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIB5</accession>
    <name>R6ZIB5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01435</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30192">
        <property type="protein sequence ID" value="CDD30192"/>
        <property type="gene ID" value="BN815_01435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="9"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="327" mass="36190" checksum="64551C69D5379F74" modified="2013-07-24" version="1">MAGKKKPVLSIESLTVDFDLGKTCHAVRDTSVRIEPGEMVALVGESGCGKTMTALSAIGLQPRNAKIPQGKILFDGSDLRGLNEEQWNQYRGRNIAMIFQEPMTALNPLMKVGRQIAENARIHGDSKELAKKKALEVMRQVGLPDVERLYNEYPHRLSGGMRQRVMIAMALVNQPELLIADEPTTALDVTIQAQIMELIRDMNRKMGTAVLLISHDLGVIRQMCSRVYIMYAGRVVESGETQEVLAHPLHPYTKGLIASIPSLEKRGQRLSSIPGTVPALEDRSEHGCPFYNRCQSCRPSCQNETPPMVVHKGHMALCVNAKEELGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIN0</accession>
    <name>R6ZIN0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01546</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000218">
        <property type="protein sequence ID" value="CDD30312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30312">
        <property type="protein sequence ID" value="CDD30312"/>
        <property type="gene ID" value="BN815_01546"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="29"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="397" mass="44683" checksum="0DD11DA2A8F19072" modified="2013-07-24" version="1">MEYQFSERVKSLKPSAIREILKNSSDPSVIPLSAGNPAPDAFPYEAVRKISQELLQNTPIDALQYGVTEGYTPLRQHLMGYMAQKHHVGTQDDDILITSGAQQVMDLLTKTLLNEGDTVLCEAPSFIGSLNTFRSYRAKLVGIPMEEDGIDTQKLEEALNTEKNVKYLYTIPNFQNPSGITMSLEKRKKVYELCREHNVIILEDNPYGDLRFAGEDVPSIKSLDTEGVVVYAGSFSKVISPGMRVGYAIGPKAVLQKMVVCKQGEDVHSNMWAQIVCHRIMTEYDFEAHLENLRAIYRRKSSILLEAMERYFKPLGITWSHFEGGLFAWCTLPAGVDMLEFVKKATEHKVCVVPGTAFLTDESEPCQSFRINFSTPTDEQLTEGIRLLAQTYEEMTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIS0</accession>
    <name>R6ZIS0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyltransferase group 2 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000224">
        <property type="protein sequence ID" value="CDD30352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30352">
        <property type="protein sequence ID" value="CDD30352"/>
        <property type="gene ID" value="BN815_00127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="29772" checksum="2F6BD66D59F722FF" modified="2013-07-24" version="1">MTYEKQTGVPRFEAQEYGAKSKDFVLLIPIINEGNRIHQELRRAQEHHVADHVDIVICDGGSQDGSTAEETLKALDVNTLLVKQDEGKQGAQLRMGIWWAIQRGYQGVITIDGNNKDSIEDVPRFIEKLREGYDFVQGSRFVPGGVAINTPLLRTISVKLIHAPLISLAAGFRFTDTTNAYRAYSMGYLTDERVQPLRDVFRTYELLAYLSVRATQLGMRACEIPVTRAYPKTGKTPTKISFFKGNWNLMKILLKTLFGAYNPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJB1</accession>
    <name>R6ZJB1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01745</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30532">
        <property type="protein sequence ID" value="CDD30532"/>
        <property type="gene ID" value="BN815_01745"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8771" checksum="61D79F7D9790DFCE" modified="2013-07-24" version="1">METSIGARFERTEIRMYHGRKYFIGDSVTSQGERLFRTVACEKMVHSPTVMFAEMVWEHIGKFARDTKTGELIRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJS9</accession>
    <name>R6ZJS9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01912</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type II topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30707">
        <property type="protein sequence ID" value="CDD30707"/>
        <property type="gene ID" value="BN815_01912"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="8">
        <location>
            <begin position="29"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="449"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="744" mass="84064" checksum="14F8B997EB4CFDC4" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK10</accession>
    <name>R6ZK10_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha amylase catalytic domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30792">
        <property type="protein sequence ID" value="CDD30792"/>
        <property type="gene ID" value="BN815_01996"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006047">
        <property type="entry name" value="Glyco_hydro_13_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00128">
        <property type="entry name" value="Alpha-amylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aamy" evidence="1">
        <location>
            <begin position="14"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="288" mass="32138" checksum="E2D5C9586E0042A3" modified="2013-07-24" version="1">MADELPDPFLDNLTAAAKAQRPDALVLGEVWEDASNKTAYGVRRRYLLGQQLDTVMNYPFRDAILGFLLGGDPRNFAETVESICENYPPQCLRLLMNHIGTHDTERALTILGGEPAGNRGREWQAAQHLSPEQWETGLKRLRLASLIQYLLPGVPCLYYGDEAGMEGYRDPFNRACYPWGREGQNLLTWYKGLGQLRAQEKGILGQGSYRTLFASGNLLAFERFVFTETTRESLTVVVNRSSRPQSVLKAALDMEDGQLLLGESLGAVNVLSPFGFSVTKFQKTLKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK73</accession>
    <name>R6ZK73_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ORF">BN815_02044</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30857">
        <property type="protein sequence ID" value="CDD30857"/>
        <property type="gene ID" value="BN815_02044"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="105"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="220"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="388" mass="41823" checksum="1189440D4962A706" modified="2013-07-24" version="1">MTFEQVKSQDQAYILHTYGRVDAALVKGRNARAWDVDGKEYIDFTAGIGVNALGYCDPEWSAAVAGQAGKIQHMCNYYYCPENTALAQELSQASGMAKAFFCNSGAEANECAVKIARKYGEKRGAYRIVTLENSFHGRTLTTLAATGQEGFHREFLPLTEGFLYAQAGDLAGIQALLDGSVCAVMLEMVQGEGGVIPMDEGFVKGLAQLCREKDVLLLIDEVQTGIGRTGRFFAYQGYGVQPDVVTCAKGIAGGLPMGACLVSERLGDILQPGQNGSTFGGNPIASAAARVVVRRVSEPAFLQSVAEKGAYFREKLEAMPQVEYVRGRGLMLGVKLKEKDAHDVLVQCAKAGLLILTAKELVRFLPPLTITQEDIDQGLAIFQQVLAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKH8</accession>
    <name>R6ZKH8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02121</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30962">
        <property type="protein sequence ID" value="CDD30962"/>
        <property type="gene ID" value="BN815_02121"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007401">
        <property type="entry name" value="DUF454"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35813">
        <property type="entry name" value="PTHR35813"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04304">
        <property type="entry name" value="DUF454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016789">
        <property type="entry name" value="DUF454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="128" mass="14467" checksum="819B222906B89F94" modified="2013-07-24" version="1">MRRILWIVLGCVGVGLGAVGAVLPLLPAFPFLLLAAFSFAKSSQRLHTWFINTSLYKKNLESYVQHRAMTWRTKRRIMLTVTVLMAFGFVMMMVKGLYIPCAILAGVWVFHILYFIFGVKTLEEPPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLI0</accession>
    <name>R6ZLI0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Predicted transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00245</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31307">
        <property type="protein sequence ID" value="CDD31307"/>
        <property type="gene ID" value="BN815_00245"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13443">
        <property type="entry name" value="HTH_26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="26"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7495" checksum="8E3A98EC42AB51A1" modified="2013-07-24" version="1">MISYAPLWQTMKRQGASTYTLQVKGGISSSTIRRLKAGDSVSTNTLDALCKILQCTIPDILEYVAEEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLM5</accession>
    <name>R6ZLM5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00289</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000410">
        <property type="protein sequence ID" value="CDD31357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31357">
        <property type="protein sequence ID" value="CDD31357"/>
        <property type="gene ID" value="BN815_00289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="11777" checksum="73C52D7F32639E73" modified="2013-07-24" version="1">MWFQKYNVALQTPIGTRQGHMTVSVQEHQICGTLDVLKQANPFSGTISETGECSICGELTSLFRSIPYQGTGNVTQEALCLLLRGKKESFVLSGRAGASALPEEREGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLU8</accession>
    <name>R6ZLU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage V sporulation protein AC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31422">
        <property type="protein sequence ID" value="CDD31422"/>
        <property type="gene ID" value="BN815_00341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014203">
        <property type="entry name" value="Spore_V_AC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005562">
        <property type="entry name" value="SpoVA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38450">
        <property type="entry name" value="PTHR38450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03862">
        <property type="entry name" value="SpoVAC_SpoVAEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02838">
        <property type="entry name" value="spore_V_AC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16012" checksum="C0F2498AB8F358B5" modified="2013-07-24" version="1">MKTVSKEEYQRRVERASPPSPVGKDCLLAFLFGGAICTLGQALCNLYQSLGLELPQARTGVSISLIFLSALLTALGLYDKIAQHAGAGTLVPITGFANSMVSPALEFKSEGFVNGLGAKLFSIAGPVLVYGITASVVYGLVLFVWQWLGGSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU29</accession>
    <name>R6XU29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000027">
        <property type="protein sequence ID" value="CDD27238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27238">
        <property type="protein sequence ID" value="CDD27238"/>
        <property type="gene ID" value="BN815_00548"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019074">
        <property type="entry name" value="YabQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09578">
        <property type="entry name" value="Spore_YabQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="129"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15227" checksum="05A9803CDEFB9E71" modified="2013-07-24" version="1">MSGQALPVAVFCLATGAALGCLFLLFQGMSQLLGLKKLGTALVDVLFCCLCGGFVFLCALAVDSGRLRLYQAALQGLGAWCVVAAFGPLARWGIGRLRKIFGKLCSLLGRWAGIPLGHLRQGAATRAHPGKKTGKKLKKPRKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6XU66</accession>
    <name>R6XU66_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">RNA polymerase sigma factor SigI</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">sigI</name>
        <name evidence="4" type="ORF">BN815_00562</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Negatively regulated by the anti-sigma-I factor RsgI.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Interacts with RsgI.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. SigI subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000029">
        <property type="protein sequence ID" value="CDD27278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27278">
        <property type="protein sequence ID" value="CDD27278"/>
        <property type="gene ID" value="BN815_00562"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02064">
        <property type="entry name" value="Sigma70_SigI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014244">
        <property type="entry name" value="RNA_pol_sigma-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30385:SF6">
        <property type="entry name" value="PTHR30385:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038953">
        <property type="entry name" value="SigI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="1" id="KW-0346">Stress response</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="3">
        <location>
            <begin position="24"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="193"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Polymerase core binding" evidence="1">
        <location>
            <begin position="50"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="114"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="27289" checksum="C707CC3C3DDBAD1A" modified="2013-07-24" version="1">MNEEHGILEQVYAAKESVQAADQLIGDYLPFIRAETAKFLKRPPEEGRDDELSIAMIAFHEAIGGYAKHRGSFLKYASMLIRSRLIDYARKERRHRQTVSLDAPAAGEESASLGETLPEERDHPAESAHRQATRQEIEELSRQMESFGVSLSDVADNCPKQQRTLQACRKALAYARENSWLLEELVQGKKLPLAKLSDGSGVERKTLERHRKYLVALLLIYTNGYEIIRGHLAQVMEGGEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUT8</accession>
    <name>R6XUT8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YqaJ domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00033</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27493">
        <property type="protein sequence ID" value="CDD27493"/>
        <property type="gene ID" value="BN815_00033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017482">
        <property type="entry name" value="Phage_endonuclease_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019080">
        <property type="entry name" value="YqaJ_viral_recombinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09588">
        <property type="entry name" value="YqaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03033">
        <property type="entry name" value="phage_rel_nuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YqaJ" evidence="2">
        <location>
            <begin position="16"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="228"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="318" mass="35565" checksum="A14A87C1DFD56470" modified="2013-07-24" version="1">MTANVLVSTENLPYEDWLEYRKAGIGGSDASVVCGVSRYKSPVELWMEKTGQLPAQETGEAAYWGNLLESLVREEFTKRTGIPVTKPSALYQSEEHPFMLANVDGLCEDPAHGPCIFEAKTASAYKVGEWEDAIPDEYMIQIQHYMAVTGYQGAYIAVLIGGNAFRWKFVERDEELIAMLISLEEDFWRHVQNGTPPALDGSNASARFLAERFPNSVPQSEIALPGKAQKLLSQYDEACRQLEDSTARKQEAENLLKEMLGDHEIGTAGNRVVTWKSVTQERLDTKTLKAEHPALFKKYASQTSYRRFAIKTVRSLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXS7</accession>
    <name>R6XXS7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">S4 region YaaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00862</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28518">
        <property type="protein sequence ID" value="CDD28518"/>
        <property type="gene ID" value="BN815_00862"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="7742" checksum="548C5099687F74B2" modified="2013-07-24" version="1">MEIIPITTEFIRLDAALKLSGLVDTGGQAKMLIQEGHVLVGGEPCPLRGKKLYPGDSFSLGDREFQVARAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZC6</accession>
    <name>R6XZC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000002">
        <property type="protein sequence ID" value="CDD26970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26970">
        <property type="protein sequence ID" value="CDD26970"/>
        <property type="gene ID" value="BN815_00019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="281"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="325"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD26970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="363" mass="41065" checksum="67BFEB78E7BF539C" modified="2013-07-24" version="1">MFRKYISLASSRIKHYAFHNALIFAMFMFGITISAIAFIFFYGNSMVDKQNEARNALSYRTFIIHSTNQLNQEILKKLSNLSTSVLDVRVKCEIENPFISHVHEAMTPQPLNIISLVKNNNAIYSYQGKNSFTKEELHQNVAIIPMDYGEVSSILLEGNKFTVVGRTTNFDLNIVFIPLHAFLTNGFNQSSIEVILDSVPSRHTNNKLLRQISELLPDAVISDPFELIQADQSKNLEGIVLSSGVFLISILSFLSLFQYLVSENSYENAVYSIVGADTKSVIIITLFEIIILSSAAAFIACIVHVTCYDLLFVKINIYGSIRYSIYDYLVCFVLEILISFAAVLPFVCYSSTHSLVEMERRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZP5</accession>
    <name>R6XZP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Possible membrane-spanning protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000010">
        <property type="protein sequence ID" value="CDD27070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27070">
        <property type="protein sequence ID" value="CDD27070"/>
        <property type="gene ID" value="BN815_00499"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="31416" checksum="F8821B8B0FDB1844" modified="2013-07-24" version="1">MKSDMYRLSRNVGLYVSPLIATFLIAQEAFGIGLVEIISGEAKNHCVEFFNMTVYFSPLMLLTPFLASIPYAAVFCEDANSGYLQFALHRNVYLKAYTRTKYFAVWTSGFLVISIPLMVFGIICVAFAAPYTELYVLENGNQLKDTAWEILGTVFDGKAVIFSQIFFFSCFSASCSVIALAASAYLPNPFFTWCFPVILAYGGNFLFSKLHLGFLNLYYSFDPVYDVLHFSSDTAGILYMLAYHAIVFLVCYVLFYLGVKRRVGGGELRICVDANKKMEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZZ1</accession>
    <name>R6XZZ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01127</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000141">
        <property type="protein sequence ID" value="CDD29333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29333">
        <property type="protein sequence ID" value="CDD29333"/>
        <property type="gene ID" value="BN815_01127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016621">
        <property type="entry name" value="UCP014543"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12646">
        <property type="entry name" value="DUF3783"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14598" checksum="E69AF5184972DA72" modified="2013-07-24" version="1">MIPTVLLFNVDADKGRRIKALCVSLKLRARSVPVEDFPQSLDALLGLAPREENPQPVEPFPQEMLVMAGLSPHQMNQLLQGFRRKKIPPVQLKAVLTASNGSWNAAKLCQELSLEHQAMLRGERLHQEGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y146</accession>
    <name>R6Y146_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MscS Mechanosensitive ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01266</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000174">
        <property type="protein sequence ID" value="CDD29783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29783">
        <property type="protein sequence ID" value="CDD29783"/>
        <property type="gene ID" value="BN815_01266"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008381">
        <property type="term" value="F:mechanosensitive ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045275">
        <property type="entry name" value="MscS_archaea/bacteria_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006686">
        <property type="entry name" value="MscS_channel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008910">
        <property type="entry name" value="TM_helix"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30221">
        <property type="entry name" value="PTHR30221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05552">
        <property type="entry name" value="TM_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82689">
        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01246">
        <property type="entry name" value="UPF0003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="271" mass="29279" checksum="DF82A9C94A52B874" modified="2013-07-24" version="1">MDWQGIWSGFLQGLANFAGDLVLAALIFLGGWLLARLAARLTKKAISKGKVDALAASFFGSLVKAVVLVVAGVSAVAQLGVNINSLVAALGAAGLTASFALQGSLSNLVSGIQIIFTKPFNMGDYLSFGTYEGTVKKIEILSTTLATFDNKEVVIPNSMITSDVVVNFTRSGTRRLDLSYGVSYQADLQKAKQLLQDLVDGDERVFQEPAPLIAVGELKDSSVTLVCKVWCNADDYWPIYYKMQEDVKAAFDREGISIPYPQLDVHMKPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1A8</accession>
    <name>R6Y1A8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00664</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27595">
        <property type="protein sequence ID" value="CDD27595"/>
        <property type="gene ID" value="BN815_00664"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="294" mass="29316" checksum="EC8AC3E9DB418A02" modified="2013-07-24" version="1">MVGGGGDGVGSLGNHPGAGHVPHDFCPRQVAANAGLGPLTHLDFNGRPGAEIVLVHPKPPRGHLHNGVFPVLVEVLVQAALAGVVVDAQLFRGPGQAGVGVVADGAVAHGGKQDGGGELQLGRQVGDDVPRAIPADVGGLAAQKGLGLHGLPQGVDGGVRHLGGVYQELIPVDGVSLGVAHGGEQHAAAFRLAVHLLDGLAGPVAVLPEGVVRLDDFQRPGGAQGHAPVAVDALALVGHHLFQSGVVPVHPVGALALAHPAVGAPVQVAHHLIGGINHVQRHALTSFPRAARPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y242</accession>
    <name>R6Y242_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Carbamoyl-phosphate synthase small chain</fullName>
            <ecNumber evidence="2">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Carbamoyl-phosphate synthetase glutamine chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">carA</name>
        <name evidence="4" type="ORF">BN815_00728</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CarA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000067">
        <property type="protein sequence ID" value="CDD27885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27885">
        <property type="protein sequence ID" value="CDD27885"/>
        <property type="gene ID" value="BN815_00728"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01744">
        <property type="entry name" value="GATase1_CPSase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01209">
        <property type="entry name" value="CPSase_S_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006274">
        <property type="entry name" value="CarbamoylP_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002474">
        <property type="entry name" value="CarbamoylP_synth_ssu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036480">
        <property type="entry name" value="CarbP_synth_ssu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035686">
        <property type="entry name" value="CPSase_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00988">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01097">
        <property type="entry name" value="CPSase_sm_chain"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52021">
        <property type="entry name" value="SSF52021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01368">
        <property type="entry name" value="CPSaseIIsmall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CPSase_sm_chain" evidence="3">
        <location>
            <begin position="3"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="CPSase" evidence="2">
        <location>
            <begin position="1"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="249"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="359" mass="39195" checksum="BF89A43EF95158BF" modified="2013-07-24" version="1">MGKTGYLVLENGKVFRGERFGAQGEMTAEVVFTTGMTGYLETLTDRSYWGQMVVQTFPLIGNYGVIPADFESDAIGPCAYIVKQWCQAPSNFRSQGSLDTFFKEKGVIGLSGIDTRTLTKIIRETGVMNGVITDDPAAVDFEALKAYRVTGAVKASSTKERYVVRPEGEVKKKIALLDFGLKRNIYRELVKRGAEVTVCPCTTTAAEIQALGVDGIMLSNGPGDPAENVEIIANLREICKLGIPLFGICLGHQLLALAHGFRTEKLKYGHRGANQPVKNLETGRVYISSQNHGYAVVSSSIDSPVARELFVNVNDNTCEGIRYLDCPAFSVQFHPEACGGPLDTQALFDEFFAMMKEGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y298</accession>
    <name>R6Y298_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Spore surface glycoprotein BclB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000203">
        <property type="protein sequence ID" value="CDD30183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30183">
        <property type="protein sequence ID" value="CDD30183"/>
        <property type="gene ID" value="BN815_01426"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008983">
        <property type="entry name" value="Tumour_necrosis_fac-like_dom"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="109" mass="11034" checksum="DC07008AAA619918" modified="2013-07-24" version="1">MSHAPGSPDIVITQPGIYQASFHSTVSTQAGESIPASLTVNLALNGATLPGAAATHTFTTSAEASTLSFTVPFQVSTTPSTLTAVPVDTGFPFDESSLTVVRLGDVPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2J7</accession>
    <name>R6Y2J7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flavodoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01517</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Low-potential electron donor to a number of redox enzymes.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the flavodoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000215">
        <property type="protein sequence ID" value="CDD30283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30283">
        <property type="protein sequence ID" value="CDD30283"/>
        <property type="gene ID" value="BN815_01517"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010087">
        <property type="entry name" value="Flav_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001226">
        <property type="entry name" value="Flavodoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01753">
        <property type="entry name" value="flav_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00201">
        <property type="entry name" value="FLAVODOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="4">
        <location>
            <begin position="4"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU367037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="14709" checksum="DE8C0D3EF4383EC0" modified="2013-07-24" version="1">MSKLAIVYWSGTGNTESMAAMVAAGAKEAGAQVDLFTAAEFGPQQMDQYDAVAFGCPSMGAEQLEEGEFEPMFSACEAKLPGKKLGLFGSYGWGDGEWMRTWEATCREDGANLVSEGVICNEAPDGEAEAACQALGKAMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3B7</accession>
    <name>R6Y3B7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Anti-sigma factor antagonist</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01699</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the anti-sigma-factor antagonist family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000259">
        <property type="protein sequence ID" value="CDD30483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30483">
        <property type="protein sequence ID" value="CDD30483"/>
        <property type="gene ID" value="BN815_01699"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043856">
        <property type="term" value="F:anti-sigma factor antagonist activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003658">
        <property type="entry name" value="Anti-sigma_ant"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13466">
        <property type="entry name" value="STAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00377">
        <property type="entry name" value="ant_ant_sig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="3">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="11471" checksum="0770EE0D372080A0" modified="2013-07-24" version="1">MSVQLSYKEGVLTARLSGEIDHHSAREMREAIDDTAQKVKPACLRLDFSQVPFMDSSGIGLVLGRVRLLQFWKGRVVLCGLSPSLGRMVELSGIGTLASIERRAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3N8</accession>
    <name>R6Y3N8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD superfamily hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01799</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30588">
        <property type="protein sequence ID" value="CDD30588"/>
        <property type="gene ID" value="BN815_01799"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008253">
        <property type="term" value="F:5'-nucleotidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011951">
        <property type="entry name" value="HAD-SF_hydro_IA_YjjG/PynA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02254">
        <property type="entry name" value="YjjG/YfnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="27286" checksum="914A2EB84C2BDF15" modified="2013-07-24" version="1">MKRYRFLLFDADYTLLDFDKDMFHAFQATYEACFGSQRPYSAQLLEQYEVCNNRWWEKLERGECTKSQLYVGRFQDFLQETGLIGQPEETNRLYFENLAQGGALLPGALELVRDLSGAYQLYIVTNGNAASQMSRLERSGLLPYVQDVFVSEDAGAAKPDVRYFDYAFSRIPGFEKERALLIGDSLTSDMLGAQNAGIDSMWYCPQALRYYPEWEEEAKKLSITYQVGSFAAIRGMLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3S3</accession>
    <name>R6Y3S3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000290">
        <property type="protein sequence ID" value="CDD30633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30633">
        <property type="protein sequence ID" value="CDD30633"/>
        <property type="gene ID" value="BN815_00144"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9491" checksum="6D7980B89ECD7733" modified="2013-07-24" version="1">MAFRSGVAPRASSTWSQMPTEFSTSVPEKLSGEYSYRMDMPGSWRSMSSVKARIRRAPSTAMWMTPCMSVSKTTFRWRVEVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3U7</accession>
    <name>R6Y3U7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 7">Transcriptional regulator MraZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mraZ</name>
        <name evidence="10" type="ORF">BN815_01860</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="7">Forms oligomers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
            <location evidence="7">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MraZ family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000292">
        <property type="protein sequence ID" value="CDD30653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30653">
        <property type="protein sequence ID" value="CDD30653"/>
        <property type="gene ID" value="BN815_01860"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16321">
        <property type="entry name" value="MraZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16320">
        <property type="entry name" value="MraZ_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01008">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003444">
        <property type="entry name" value="MraZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035644">
        <property type="entry name" value="MraZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020603">
        <property type="entry name" value="MraZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035642">
        <property type="entry name" value="MraZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038619">
        <property type="entry name" value="MraZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34701">
        <property type="entry name" value="PTHR34701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02381">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00242">
        <property type="entry name" value="TIGR00242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="5"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="SpoVT-AbrB" evidence="9">
        <location>
            <begin position="74"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="139" mass="15610" checksum="985A66D14D9BDB28" modified="2013-07-24" version="1">MLTGEYQHNMDLKGRVTVPSKFREDLGDKFYVCKGLDGCLFLLSQAQWDKLVEKVSAIPLAQGKGIQRYFFSGAAEVEPDKQGRILIPQSLREHAGLEKDVTVIGAAVRAEIWDTARWNAYNESQTDEAIEASMNLLDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3X1</accession>
    <name>R6Y3X1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA modification GTPase MnmE</fullName>
            <ecNumber evidence="6">3.6.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mnmE</name>
        <name evidence="6" type="synonym">trmE</name>
        <name evidence="9" type="ORF">BN815_00869</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="6">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.-.-" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28540">
        <property type="protein sequence ID" value="CDD28540"/>
        <property type="gene ID" value="BN815_00869"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04164">
        <property type="entry name" value="trmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00379">
        <property type="entry name" value="GTPase_MnmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031168">
        <property type="entry name" value="G_TrmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018948">
        <property type="entry name" value="GTP-bd_TrmE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004520">
        <property type="entry name" value="GTPase_MnmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027368">
        <property type="entry name" value="MnmE_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025867">
        <property type="entry name" value="MnmE_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12631">
        <property type="entry name" value="MnmE_helical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10396">
        <property type="entry name" value="TrmE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00450">
        <property type="entry name" value="mnmE_trmE_thdF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51709">
        <property type="entry name" value="G_TRME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0630">Potassium</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TrmE-type G" evidence="8">
        <location>
            <begin position="220"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="230"/>
            <end position="235"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="249"/>
            <end position="255"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="274"/>
            <end position="277"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="455"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="455" mass="48574" checksum="B323EB6335543180" modified="2013-07-24" version="1">MEKTIAAISTAPAPGGIGIVRISGGEAFAVAEKVFRGVSGKKVSQMKGYTAQLGGAYTPTGEKLDDVVALVYRGPKSYTGEDVVELSCHGGLYMTKRLLQLVLDAGAAPAGPGEFTRRAFLNGKMDLAQAEAVMGLISASGEQARKAALAGSTGVLSRKIESIKQGLLEQAAHLAAWADFPEEDVPQVEEAALLEGIRQGEKALEELLQGFDRGRMYREGLVTVIAGRPNAGKSTLMNLLSGCQRSIVTQYAGTTRDVVEETVMVAGVPLRLADTAGIRDTDDPVESIGVQAARQRLETAQLVLAVFDSSQALEKEDWELMDALENVPAIAIVNKSDLPTRMDVEAIQKRFEKTVSLSAATGEGLAELEQALSEILDTKDFHPQEGVLFTQRQRMDAQTALDSLREGEQALVLGLTLDAVTVCVEDALHALAALTGEQVSEEIVDRVFEEFCVGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Z7</accession>
    <name>R6Y3Z7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00878</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28570">
        <property type="protein sequence ID" value="CDD28570"/>
        <property type="gene ID" value="BN815_00878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024989">
        <property type="entry name" value="MFS_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12832">
        <property type="entry name" value="MFS_1_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="16"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="218"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="308"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="344"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="372"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="8">
        <location>
            <begin position="1"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="43855" checksum="AD0D8F5917390EA0" modified="2013-07-24" version="1">MIKLLFARLTDSGRQALVLTGINSVFWFAWAFGSYQTIYLQQAGFTASQLGVLNALTSIFSIASVAFWGMVSDRMGSLRKVLILVLLGGSLLFALIPLIPTGLPISPGLFFCLVPVVYFFRGSMCTYAENILVRNSNELRLNYGLLRSVGSFLFMIGSFLISFLLPTVGVASTFWMAGLLTLIPVFLTFFAREPNAQAAGKPAGKQKLNLGELFQNKAYVSLLFFGLLLYIATSCEGTFLPYFMADAGVPSERYGIFMGWRALLEIPFLLLMVRLRRRFPLRVLVMGPPILMGLECLFLGLWADSFWSMLLCCTFYGLGNGLLIGSSLNYVYELAPAHLKASAQAFFSAVSSVAGILGNLVGGVVYDAVGAKGFYLLVAGVFLLSFGVFALTQRKRKNVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y419</accession>
    <name>R6Y419_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00891</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000096">
        <property type="protein sequence ID" value="CDD28595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28595">
        <property type="protein sequence ID" value="CDD28595"/>
        <property type="gene ID" value="BN815_00891"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="59"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="149"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="182"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="239"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="276"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="306"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="368"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="394"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="424" mass="47591" checksum="FB0E92C468638F21" modified="2013-07-24" version="1">MSFKSKMRRLGQHPLLQVLSNNKGNPRTLVLIEPLWGIPYNLIAPFATLYMYTQGVTDVQIGLILSITMFVQVFFSFFGGILADKLGRKFTTMLGDFFGWAVACLVWSVSNNFWLFLAAALLNCFEQINQTAWYCLLIEDAQPKDLIGIYTWVNIGGLVAIFFAPLSGLFVNDYSVVPVVRVLYFLFALTMLTKCFITFKFCRETKQGQVRRAETKGVSIFHMVGEYRHLIPRLLQDKAVLKAVAVSVILYITNMVNTNFFSLYVTQRLGLSENFLALFPILNAAVMLVFMVGIQHRLSATKFRAPLWTGLVLYAVAALVLIFSPADSLGFVLIYVFVAAVAASLVNPRKDALLQLNINPQERARLNALIMASTIALSSPFGYLAGWLSSLDRRLPFVFSFVLFLVAMLVISRIQEPSMEEETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4A0</accession>
    <name>R6Y4A0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Alpha-1,4 glucan phosphorylase</fullName>
            <ecNumber evidence="6">2.4.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01997</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Allosteric enzyme that catalyzes the rate-limiting step in glycogen catabolism, the phosphorolytic cleavage of glycogen to produce glucose-1-phosphate, and plays a central role in maintaining cellular and organismal glucose homeostasis.</text>
    </comment>
    <comment type="function">
        <text evidence="4">Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>[(1-&gt;4)-alpha-D-glucosyl](n) + phosphate = [(1-&gt;4)-alpha-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:41732"/>
            <dbReference type="Rhea" id="RHEA-COMP:9584"/>
            <dbReference type="Rhea" id="RHEA-COMP:9586"/>
            <dbReference type="ChEBI" id="CHEBI:15444"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.4.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the glycogen phosphorylase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.1" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000321">
        <property type="protein sequence ID" value="CDD30793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30793">
        <property type="protein sequence ID" value="CDD30793"/>
        <property type="gene ID" value="BN815_01997"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008184">
        <property type="term" value="F:glycogen phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102250">
        <property type="term" value="F:linear malto-oligosaccharide phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102499">
        <property type="term" value="F:SHG alpha-glucan phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011833">
        <property type="entry name" value="Glycg_phsphrylas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000811">
        <property type="entry name" value="Glyco_trans_35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11468">
        <property type="entry name" value="PTHR11468"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00343">
        <property type="entry name" value="Phosphorylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000460">
        <property type="entry name" value="Pprylas_GlgP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02093">
        <property type="entry name" value="P_ylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5 6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="5">
        <location>
            <position position="662"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000460-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="820" mass="93611" checksum="D99D2D30B634A218" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y528</accession>
    <name>R6Y528_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative cyanobacterial protein TIGR03792 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000357">
        <property type="protein sequence ID" value="CDD31008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31008">
        <property type="protein sequence ID" value="CDD31008"/>
        <property type="gene ID" value="BN815_00197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022512">
        <property type="entry name" value="CHP03792"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03792">
        <property type="entry name" value="TIGR03792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="126" mass="15263" checksum="61FCE387DC1E0110" modified="2013-07-24" version="1">MQGYTYVKGEHYPVEHLIFETAPEHVQEFLDVDHEVWTLGEAESDLFDHIPFLYKEVWVNDNKPGEMHFIFVWESIESWRKVDDKEVQAALIARFESKFQHPYKLTRCIQNEENFGIHRYSRFERI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5W1</accession>
    <name>R6Y5W1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31333">
        <property type="protein sequence ID" value="CDD31333"/>
        <property type="gene ID" value="BN815_00268"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="650" mass="71544" checksum="2AFDB62F4E85B5E9" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Y1</accession>
    <name>R6Y5Y1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01123</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29305">
        <property type="protein sequence ID" value="CDD29305"/>
        <property type="gene ID" value="BN815_01123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="59" mass="6591" checksum="41490EF9C35DBBE0" modified="2013-07-24" version="1">MPAFSSSSLLSSYRAVKPSKATLKPEALKIYFPAPMVAWVVFITQLAIWQAMNRSQMSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5Y6</accession>
    <name>R6Y5Y6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative dihydroxyacetone kinase regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00290</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000410">
        <property type="protein sequence ID" value="CDD31358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31358">
        <property type="protein sequence ID" value="CDD31358"/>
        <property type="gene ID" value="BN815_00290"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039532">
        <property type="entry name" value="TetR_C_Firmicutes"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14278">
        <property type="entry name" value="TetR_C_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="194" mass="22403" checksum="E4CBB2C1A05A6BFF" modified="2013-07-24" version="1">MTNEELSFRTKQALAAALKTALERKKLSKITVSELAEACQVNRKTFYYHFQDVYALFRWMLEQEAIDVVKNFDLVVDTEEALRFVMEYVDENKHLINGAFDSMGYEEIKRFFYNDLFSVLDGAISQGETELGVRLDPGFKKYLATFYTEASAGLLMEWIKSRDAYDKETVLENLLSIFKISMMAIISQKGCSEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y632</accession>
    <name>R6Y632_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00329</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31398">
        <property type="protein sequence ID" value="CDD31398"/>
        <property type="gene ID" value="BN815_00329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="7">
        <location>
            <begin position="128"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="128"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="226" mass="25507" checksum="26A7B431A6B4B31D" modified="2013-07-24" version="1">MIYFLEDDNSIRELVVYTMNSTGFEAVGFGKPGEFWAAMERETPSLVLLDIMLPEEDGLSILKKLRANPATKRLPVMMLTAKDSEYDKVLGLDSGADDYVPKPFGMMELMARIKALLRRSGSTPEEGNKDYNVGKLYVSPSRHQVKVDGNEVSLTLKEFELLCFLLENDGMVLTRDKILARIWGYDFDGETRTVDVHVRTLRQKLGECGSLIETVRGVGYKIDRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6M5</accession>
    <name>R6Y6M5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01178</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29505">
        <property type="protein sequence ID" value="CDD29505"/>
        <property type="gene ID" value="BN815_01178"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="16029" checksum="A8A6663A377B7682" modified="2013-07-24" version="1">MKAFLKTYWLELALFAVALVGEVMVLPFLPESVPVYWNIPFCQAPKWTLLLLTVTQLPGACLVRFGLHLYFAKYPAVALTFGSLERLVPPLFSVALILCQLSSVLGSFGLFFPVLYVLLAELVFLALLCIGLAASKHKGRSGRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7L3</accession>
    <name>R6Y7L3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein-export membrane protein SecG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01293</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in protein export. Participates in an early event of protein translocation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SecG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29905">
        <property type="protein sequence ID" value="CDD29905"/>
        <property type="gene ID" value="BN815_01293"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004692">
        <property type="entry name" value="SecG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03840">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01651">
        <property type="entry name" value="SECGEXPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00810">
        <property type="entry name" value="secG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU365087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="82" mass="8962" checksum="F5953FFBFD0CA7EF" modified="2013-07-24" version="1">MNALEIVFGIVLMLFAIAIIIVVLLQEGSQKNLGVVTGGADTFLSKNKARSVDAFLSRWTKVIAIGFFVLVIVTNILMYFVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8A3</accession>
    <name>R6Y8A3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01400</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30155">
        <property type="protein sequence ID" value="CDD30155"/>
        <property type="gene ID" value="BN815_01400"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010126">
        <property type="entry name" value="Esterase_phb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10503">
        <property type="entry name" value="Esterase_PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437493" evidence="2">
        <location>
            <begin position="34"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="450"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="514"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="domain" description="SLH" evidence="3">
        <location>
            <begin position="579"/>
            <end position="638"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="638" mass="69682" checksum="B9F8D06849278802" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8D1</accession>
    <name>R6Y8D1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stress responsive alpha-beta barrel domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000203">
        <property type="protein sequence ID" value="CDD30185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30185">
        <property type="protein sequence ID" value="CDD30185"/>
        <property type="gene ID" value="BN815_01428"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013097">
        <property type="entry name" value="Dabb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07876">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00886">
        <property type="entry name" value="Dabb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51502">
        <property type="entry name" value="S_R_A_B_BARREL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Stress-response A/B barrel" evidence="1">
        <location>
            <begin position="2"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11877" checksum="61BA3A8C53A8B7A3" modified="2013-07-24" version="1">MIQHIVMFKFQETACGKTKAENLEEARQRMLALREQIPQIRGMEVRLAAPGSAPGNYDYILISQFDSMEELEIYQKHPAHVAFGKFVTELREPDGRACMDYQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8R1</accession>
    <name>R6Y8R1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N(6)-L-threonylcarbamoyladenine synthase</fullName>
            <ecNumber evidence="2">2.3.1.234</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00693</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27674">
        <property type="protein sequence ID" value="CDD27674"/>
        <property type="gene ID" value="BN815_00693"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="7">
        <location>
            <begin position="47"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="312" mass="33489" checksum="72E5F11D47435DD4" modified="2013-07-24" version="1">MGERFLGIDTSNYTTSAALFDGQRVLENRKLLLPVKPGEKGLRQSDAVFHHVRQLPHVLGPLLEELEAPPGAVGVSVSPTTAEGSYMPCFLVGKNTAGLLGQAWKAPVEHFSHQQGHIAAALYSAGRLELLERRFLAFHVSGGTTEALLVQPDGEGMPHITLAAHSLDLKAGQAVDRVGLLLGLSFPCGPELERLALQWEGKLSYRPVLKGHDCSLSGIENQCKAMVDRGEPPAKIARHCLEAIASVLDKMCSRLLEELGPLPVVFSGGVCSNSLLRQRLGEKYSATFAAPEFSSDNAAGVAVLAWKKRCQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8V4</accession>
    <name>R6Y8V4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01582</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000226">
        <property type="protein sequence ID" value="CDD30355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30355">
        <property type="protein sequence ID" value="CDD30355"/>
        <property type="gene ID" value="BN815_01582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="92" mass="10227" checksum="BDA40F2797B269BC" modified="2013-07-24" version="1">MVLDEATAFADPENEHQIQKAFETLTRNKTVLMIAHRLSTVQNADNIIVLNEGKIAEQGSHSALLEKNGVYAAMWADYQRSAQWKVGKEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y916</accession>
    <name>R6Y916_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA polymerase III subunit alpha</fullName>
            <ecNumber evidence="3">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_01631</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DNA polymerase type-C family. DnaE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30410">
        <property type="protein sequence ID" value="CDD30410"/>
        <property type="gene ID" value="BN815_01631"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011708">
        <property type="entry name" value="DNA_pol3_alpha_NTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041931">
        <property type="entry name" value="DNA_pol3_alpha_thumb_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040982">
        <property type="entry name" value="DNA_pol3_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029460">
        <property type="entry name" value="DNAPol_HHH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004805">
        <property type="entry name" value="PolC_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32294">
        <property type="entry name" value="PTHR32294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07733">
        <property type="entry name" value="DNA_pol3_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17657">
        <property type="entry name" value="DNA_pol3_finger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14579">
        <property type="entry name" value="HHH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00594">
        <property type="entry name" value="polc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="POLIIIAc" evidence="12">
        <location>
            <begin position="4"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00026073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1163" mass="129573" checksum="5CC0B42D19F6CEE5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Y5</accession>
    <name>R6Y9Y5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ATPase family associated with various cellular activities (AAA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01925</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000310">
        <property type="protein sequence ID" value="CDD30720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30720">
        <property type="protein sequence ID" value="CDD30720"/>
        <property type="gene ID" value="BN815_01925"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="5">
        <location>
            <begin position="159"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="5">
        <location>
            <begin position="493"/>
            <end position="665"/>
        </location>
    </feature>
    <feature type="domain" description="ClpB_D2-small" evidence="6">
        <location>
            <begin position="664"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="364"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="756" mass="84125" checksum="52C489E621172704" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA17</accession>
    <name>R6YA17_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor SigA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">sigA</name>
        <name evidence="9" type="ORF">BN815_00763</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts transiently with the RNA polymerase catalytic core.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoD/SigA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28099">
        <property type="protein sequence ID" value="CDD28099"/>
        <property type="gene ID" value="BN815_00763"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.220.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00963">
        <property type="entry name" value="Sigma70_RpoD_SigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009042">
        <property type="entry name" value="RNA_pol_sigma70_r1_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007624">
        <property type="entry name" value="RNA_pol_sigma70_r3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007127">
        <property type="entry name" value="RNA_pol_sigma_70_r1_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042189">
        <property type="entry name" value="RNA_pol_sigma_70_r1_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012760">
        <property type="entry name" value="RNA_pol_sigma_RpoD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028630">
        <property type="entry name" value="Sigma70_RpoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03979">
        <property type="entry name" value="Sigma70_r1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00140">
        <property type="entry name" value="Sigma70_r1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04539">
        <property type="entry name" value="Sigma70_r3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02393">
        <property type="entry name" value="RpoD_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="7">
        <location>
            <begin position="154"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_sigma70" evidence="8">
        <location>
            <begin position="323"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="324"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-2" evidence="6">
        <location>
            <begin position="130"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-3" evidence="6">
        <location>
            <begin position="209"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-4" evidence="6">
        <location>
            <begin position="298"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="154"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="363" mass="40741" checksum="374DEC60DB9893E7" modified="2013-07-24" version="1">MAAQPDKKTVIKDLLELGKSKGQLSTKEILDALGELDFDPEQIEKFYDTLESQGVEIVEDFDDITIDDEELAKAEGIELEPGMGADGVAIDDPVKVYLKEIGRVPLLTPDEEVDLAVRISNGDEAAKKRLSEANLRLVVSIAKRYLGRGMQFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHANGREPSAEEVAEELDMPVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPADAASHTLLKETLSSVLDSLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAE7</accession>
    <name>R6YAE7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flavodoxin-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00794</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28244">
        <property type="protein sequence ID" value="CDD28244"/>
        <property type="gene ID" value="BN815_00794"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001226">
        <property type="entry name" value="Flavodoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026816">
        <property type="entry name" value="Flavodoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12724">
        <property type="entry name" value="Flavodoxin_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00201">
        <property type="entry name" value="FLAVODOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="1">
        <location>
            <begin position="3"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="19329" checksum="9C1176416DAED10E" modified="2013-07-24" version="1">MRLLVVYTSKTGFTKRYAQWLAEDLSGDCFPLEQAARVDFSGYDAVAFGSSVHAGGVRKLAWLKKRLPALAGKRVALFFTGAMPPEEKTVEQCVAQNLTPQERQQVKAFYLWGGLNYQAMGPVDKWMMGVFRKMLAAQKNPSPEDKLAAQMVGSSYDKTDRASLKPLEDYLTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB70</accession>
    <name>R6YB70_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00851</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28484">
        <property type="protein sequence ID" value="CDD28484"/>
        <property type="gene ID" value="BN815_00851"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026989">
        <property type="entry name" value="TnpV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14198">
        <property type="entry name" value="TnpV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="6945" checksum="E6055DC317FA5A6F" modified="2013-07-24" version="1">MAEIDAACKTRLDIIETALMRREGVTEALKAADQMEWVRRMNSIHSRAEEIVLHELVYTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB72</accession>
    <name>R6YB72_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Lon protease</fullName>
            <ecNumber evidence="5 6">3.4.21.53</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent protease La</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lon</name>
        <name evidence="14" type="ORF">BN815_02289</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 9">
            <text>Hydrolysis of proteins in presence of ATP.</text>
            <dbReference type="EC" id="3.4.21.53"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 6">Homohexamer. Organized in a ring with a central cavity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="induction">
        <text evidence="5">By heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 9 10">Belongs to the peptidase S16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="14">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.53" evidence="5 6"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31145">
        <property type="protein sequence ID" value="CDD31145"/>
        <property type="gene ID" value="BN815_02289"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01973">
        <property type="entry name" value="lon_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027543">
        <property type="entry name" value="Lon_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004815">
        <property type="entry name" value="Lon_bac/euk-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001174">
        <property type="entry name" value="Lon_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00763">
        <property type="entry name" value="lon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="13">
        <location>
            <begin position="17"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="12">
        <location>
            <begin position="600"/>
            <end position="781"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="197"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="687"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="730"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <begin position="363"/>
            <end position="370"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="CDD31145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="809" mass="90046" checksum="A42717D1944F1B78" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB89</accession>
    <name>R6YB89_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02314</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31170">
        <property type="protein sequence ID" value="CDD31170"/>
        <property type="gene ID" value="BN815_02314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016787">
        <property type="entry name" value="UCP021328"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11208">
        <property type="entry name" value="DUF2992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021328">
        <property type="entry name" value="UCP021328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="130" mass="15757" checksum="2A792B55B37CB776" modified="2013-07-24" version="1">MFFEEPFWVGLYQRWSGPKLEVAKITFGAEPKDGEVYQFLLEHWKRLSFSPPVEQEIPEERRINPKRARREIQRKELSARPGTKSQQALALQREAAKASRQEDARQRKERERQEKFQIRQRKRKEKHRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBB2</accession>
    <name>R6YBB2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sporulation integral membrane protein YtvI</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02349</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31205">
        <property type="protein sequence ID" value="CDD31205"/>
        <property type="gene ID" value="BN815_02349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="208"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28293" checksum="404A1CEC3411D434" modified="2013-07-24" version="1">MTDFLNRAGEFLSQFDLDFLELHSQEILEALQNSMDLVVTCMGAALRLLTSLPTIVTLVIVAVCAAFFFARDMKQFLAWGRGFFSETAAFHISAAVKNSGGTGRKYILSYLFLYFLTFCQTCVIMAVLGVPYPLLIGFLTAVADVLPVLGPVFVLVPVAVYQLLIGQYARALGIAIGWLVITFIRQVVEPKLVASSVKIHPLATLAAVYFSLVAQSFWVLFYVLGLCALYGAFRETGALPALVEQPEKSAAPSKERADT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBF1</accession>
    <name>R6YBF1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02394</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31250">
        <property type="protein sequence ID" value="CDD31250"/>
        <property type="gene ID" value="BN815_02394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="29" mass="3371" checksum="8D272A59718CF208" modified="2013-07-24" version="1">MKIVIVDRRKGMVGMLLRKLYGIRKVAEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBR6</accession>
    <name>R6YBR6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">SIS domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000416">
        <property type="protein sequence ID" value="CDD31370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31370">
        <property type="protein sequence ID" value="CDD31370"/>
        <property type="gene ID" value="BN815_00302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="3"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="125"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32264" checksum="03F21C81071F0C76" modified="2013-07-24" version="1">MNSQLSERIRLHSANFSKGQRMIARYIEEHSEQVAFMTASRLGQTVGVSESTVVRFATEIGYSGYPALQQAMQEMIRSKMTSVQRLERTSTTIPMDRLLDEVLDQDIDILKRTKENVDREAFYRAADALVNAKKVYVLGAGSSLALATFMAHYLRLVFETVHLVEATSEATILQQMVHVGEGDAVIAISFPRYSKKAVKTMKYASSQKATTVAITDSPLSPLAQYASHVLLARSDMVSFVDSLVGPLSILNALIVTVAIRKKSEVADTLRKIEEIWDEYGVYEKVDEKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC57</accession>
    <name>R6YC57_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">30S ribosomal protein S3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsC</name>
        <name evidence="13" type="ORF">BN815_00371</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31495">
        <property type="protein sequence ID" value="CDD31495"/>
        <property type="gene ID" value="BN815_00371"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_B">
        <property type="entry name" value="Ribosomal_S3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005704">
        <property type="entry name" value="Ribosomal_S3_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_S3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018280">
        <property type="entry name" value="Ribosomal_S3_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="SSF54821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01009">
        <property type="entry name" value="rpsC_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00548">
        <property type="entry name" value="RIBOSOMAL_S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="12">
        <location>
            <begin position="39"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="212"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="248" mass="28302" checksum="C197E97600FCBDFD" modified="2013-07-24" version="1">MGQKVNPHGLRVGVIKDWDSRWFAKDNEFGDILVEDYNLRKTLKKQLYAAGVPKIEIERDASKVRIHIHCAKPGMVIGKGGSEIEKLRLQCEKMLGKPVVINIVEVRQPDLNAQLVAENIASQLERRISFRRAMKGCIGRSMKLGAKGIKTKVSGRLGGAEIARSEEYHDGTIPLQTIRADIDYGFAEANTTYGRIGVKVWLYKGEVLNDRGERRERTERNDRGDRRRDDRRERRDRRPAGNREGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCC7</accession>
    <name>R6YCC7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">50S ribosomal protein L17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplQ</name>
        <name evidence="6" type="ORF">BN815_00395</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit. Contacts protein L32.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31520">
        <property type="protein sequence ID" value="CDD31520"/>
        <property type="gene ID" value="BN815_00395"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01368">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_L17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_L17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="PTHR14413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="SSF64263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00059">
        <property type="entry name" value="L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01167">
        <property type="entry name" value="RIBOSOMAL_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="1 3 4" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12705" checksum="FBDBA5E6C2EF15D5" modified="2013-07-24" version="1">MPGTRKLGRDTAHRTAMLRGLVTFFLENGKIETTVTRAKEVRALAEKMITIAKQDNLHNKRLVMSFITKESVTNKLFTEIAPKYADRNGGYTRITKLGPRRGDAAEMAILELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD79</accession>
    <name>R6YD79_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NusG_II domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01102</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29234">
        <property type="protein sequence ID" value="CDD29234"/>
        <property type="gene ID" value="BN815_01102"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038690">
        <property type="entry name" value="NusG_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024045">
        <property type="entry name" value="NusG_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07009">
        <property type="entry name" value="NusG_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NusG_II" evidence="1">
        <location>
            <begin position="18"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="128" mass="13191" checksum="1B6A8949C0C7F80B" modified="2013-07-24" version="1">MEGKKFLSPRGMVLCGALLLAAGALYLALSLLPQGTVAVVEQNGQEVARRELSQLAGPETLSLTGENGVEVTITFTPQGAAVTDSTCPDQVCVQTGQLTRAGESAICLPARVTLRLEGGGDSVDATVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YD92</accession>
    <name>R6YD92_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Peptidase_M28 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01108</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Endoplasmic reticulum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Golgi apparatus</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Lysosome</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000137">
        <property type="protein sequence ID" value="CDD29249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29249">
        <property type="protein sequence ID" value="CDD29249"/>
        <property type="gene ID" value="BN815_01108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005764">
        <property type="term" value="C:lysosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070573">
        <property type="term" value="F:metallodipeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039866">
        <property type="entry name" value="CPQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007484">
        <property type="entry name" value="Peptidase_M28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12053">
        <property type="entry name" value="PTHR12053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04389">
        <property type="entry name" value="Peptidase_M28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0256">Endoplasmic reticulum</keyword>
    <keyword evidence="6" id="KW-0333">Golgi apparatus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M28" evidence="7">
        <location>
            <begin position="199"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="423" mass="46951" checksum="78526B15E7703C6C" modified="2013-07-24" version="1">MEICGKREMELLEKIGFTRIAGSPEEEKAAQILKAECDAIGVPAIIEPFEIEQGIVEEATLEILEPFQQEYPVTGYQCAENTPEGGLTAEFVYVENATDVDLQDVQGKIVLVNGFMRVPLYKKLMKAGVAGIVTMEGELRDRREETDLSTRKLRRTLRTFGNVPMVHTRVVDAMDMVRKGACKARMVLKGRTEERTSHNVVATVLGTQRPQEILSFGAHYDSVAFSKGVYDNGAGSVINMEVLRYFKENPPKRTLKFMWYGSEEIGLEGSWAYVKAHKEELSDHLLMINVDVGGPILGHDGIAATAEDKLATYLEYFVKIHGFSAEVKQGIYSSDSIPFADSGIPGVNFTRFGAPGAAYIHNRFDTLDFLSADALAKTTRTVLAFAQEMANAAVLPVERKIPQNMVDEVEKYLYKKELAEANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEC6</accession>
    <name>R6YEC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00096</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29649">
        <property type="protein sequence ID" value="CDD29649"/>
        <property type="gene ID" value="BN815_00096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="132"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="336" mass="36196" checksum="17D4EAE09090E1E4" modified="2013-07-24" version="1">MKIAVIGAWHVHTQEYAQAILKNPQAQLACLWDDDQARGQAMAQTLGVPFQPDLEAIWADSSIQGIQVTTATNQHKEVLLAAAKAGKHIFTEKVLALTNEDAQEIAQAIRESGVTFTISYPHKCRPALKAAKALVESGKLGQITYARVHNYHNGSVAPQADGSLGWLPPHFYDEVQTGGGAMMDLGAHPMYTLHWFLGEPKSVVSQFTQVTHRGVEDNAVSVLEFEGGAIGVSETGFVTSGNGYFLELSGTQGSLHVFGDHGDRLEYSCPETGGKTVEMTDLPQPDTMPIDAWIAACCGQGQAPNGIDEAVALTQFMVGAYESYRTGQKYTFPSAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEH7</accession>
    <name>R6YEH7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">SLH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01242</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 25 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000171">
        <property type="protein sequence ID" value="CDD29714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29714">
        <property type="protein sequence ID" value="CDD29714"/>
        <property type="gene ID" value="BN815_01242"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016998">
        <property type="term" value="P:cell wall macromolecule catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002053">
        <property type="entry name" value="Glyco_hydro_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001119">
        <property type="entry name" value="SLH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01183">
        <property type="entry name" value="Glyco_hydro_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00395">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51904">
        <property type="entry name" value="GLYCOSYL_HYDROL_F25_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51272">
        <property type="entry name" value="SLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLH" evidence="2">
        <location>
            <begin position="221"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="274" mass="30110" checksum="3DF435283E213C27" modified="2013-07-24" version="1">MQTKGVDISEHNGAVDFAALTQAGVKFAILRLGYGSDYTSQDDAQFAQNVRKAEAAGMPWGAYLYSYAKDASMAQSEARHALRLLQGRKPLYGVWYDVEDSQIAGADLVATCQTFCDAMEAAGLYAGIYASLSWLTTKLNSPQLDPYDKWVAQWNSACTYPKPYGIWQYTDRLAIGGQVFDGNWAYKDYPAIIQAMSSQQEGASLTEADVKKLARQEMEAYFAELAKKPVSPWAQAAVESVLARGLMRGDADGSFRPQSFITRQEVAAVLENLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFX7</accession>
    <name>R6YFX7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30244">
        <property type="protein sequence ID" value="CDD30244"/>
        <property type="gene ID" value="BN815_01487"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025051">
        <property type="entry name" value="DUF3990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13151">
        <property type="entry name" value="DUF3990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="163" mass="18723" checksum="7C7383D9DB4D9DEC" modified="2013-07-24" version="1">MILYHGSNLVVSEPKLIQQNRFLDFGFGFYTTTNKAQAISFADKVTKRRQNGQRTVSMYEIDENIAFSECSILRFDEPGEAWLDFVSDNRSGKYEGEAYDFIFGPVANDDVYRTFTLYTAGVLTKEQTLEQLKIKKLYNQLVLTTEKALSHLRFGGTVPEEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGU8</accession>
    <name>R6YGU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30574">
        <property type="protein sequence ID" value="CDD30574"/>
        <property type="gene ID" value="BN815_01785"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008998">
        <property type="term" value="F:ribonucleoside-triphosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012833">
        <property type="entry name" value="NrdD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13597">
        <property type="entry name" value="NRDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="56" mass="6527" checksum="48F3AEEF060A85F4" modified="2013-07-24" version="1">MAKTVAENKEQILVGEGRDFERIRRITGYLVGTIDRWNNAKRAEEKDRVKHTLSNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHD7</accession>
    <name>R6YHD7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Cell shape-determining protein MreC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Cell shape protein MreC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_02003</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in formation and maintenance of cell shape.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the MreC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30799">
        <property type="protein sequence ID" value="CDD30799"/>
        <property type="gene ID" value="BN815_02003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042177">
        <property type="entry name" value="Cell/Rod_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042175">
        <property type="entry name" value="Cell/Rod_MreC_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007221">
        <property type="entry name" value="MreC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34138">
        <property type="entry name" value="PTHR34138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04085">
        <property type="entry name" value="MreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038471">
        <property type="entry name" value="MreC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="68"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00032089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR038471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="31306" checksum="EFC1BA947C7D4B56" modified="2013-07-24" version="1">MKDFFKTSSFKVLVIVVVVLLGLLIYTATAGGSVVASLLGFVTSPMQSVSTQVTGSVTEFVDLDALSRDELKEMVNSLSQENATLREQLVDYENTQKENEQLKVQLDITEDAPENTLRAATVIGRDPNDAFYGFSIDQGTLAGISVGDPVITQQGLVGVVTQAYATTSKVTTLLSEDVNVSAVVPSRGESGVISSDITSASAGLLRLSYLSNDTQVQEGDIVTTSGVGGTYPADVIIGQVQSVQKSENDISNYAVIKPYEDLTSVQDVFVVIDFPGAGDGEEIPVGQDTSGEEDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHP0</accession>
    <name>R6YHP0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000076">
        <property type="protein sequence ID" value="CDD28031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28031">
        <property type="protein sequence ID" value="CDD28031"/>
        <property type="gene ID" value="BN815_00744"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Exonuclease" evidence="1">
        <location>
            <begin position="19"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="299" mass="32863" checksum="709D935F9B86CF92" modified="2013-07-24" version="1">MAKPQRPGKGESVLCLPRDYTVVDTETTGLSTESCCLIEVSALRVREGRVAAEFSTLIRPPWREVQKNGQWQQGYVDDFIQGLTGITDEMLEGAPLPEEALPQVEDFLGRDLLLGHNVGFDTAFLYDSFQKYLGRPLGNNSLDQLRLARKLLPQLPHHRLGDVAAALGVPYQGAHRALADCWITYGCYEKLRALALSQGTEEEFLQRFEKKKPPKPRYPGVPGHPFYQKTLVLTGSLDTSQNREAVLRAGGKVGKEVAAGVDFVAIPAPGEKPLPGKEGGPSILPQDVFYRLLGQGQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHS4</accession>
    <name>R6YHS4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Soluble lytic murein transglycosylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00754</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28081">
        <property type="protein sequence ID" value="CDD28081"/>
        <property type="gene ID" value="BN815_00754"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLT" evidence="1">
        <location>
            <begin position="43"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="186" mass="20652" checksum="08E40B0DBCA2CB4C" modified="2013-07-24" version="1">MKRGCLTLAVLAVAVAVVVVLFGPRLLEGGLRLLYPQRYTELVEREAAEFDLEPNLVYAIIKTESGFDPQARSHADAMGLMQLTQETFDWILSLYPTEDGSGDIWDPGDNIHCGCALLRLLLDQYGTVEVALAAYNAGMGNVSGWLESGDYSHDGETLHTIPYPETDAYVKKVQRAYGLYQKLYEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHU8</accession>
    <name>R6YHU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Monogalactosyldiacylglycerol synthase C-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02138</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glycosyltransferase 28 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30979">
        <property type="protein sequence ID" value="CDD30979"/>
        <property type="gene ID" value="BN815_02138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016758">
        <property type="term" value="F:hexosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009247">
        <property type="term" value="P:glycolipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009695">
        <property type="entry name" value="Diacylglyc_glucosyltr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007235">
        <property type="entry name" value="Glyco_trans_28_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04101">
        <property type="entry name" value="Glyco_tran_28_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06925">
        <property type="entry name" value="MGDG_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MGDG_synth" evidence="6">
        <location>
            <begin position="14"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_tran_28_C" evidence="5">
        <location>
            <begin position="203"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF04101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="373" mass="41706" checksum="96A9F32DAE5B3B24" modified="2013-07-24" version="1">MKIMLLTAATGGGHLRASAAVEKYIQDNTSYDVVTVDALKAVGRFLDKTVCDSYRFMAKRVPAMFGRLYKQTNHESLFAGLVPKLSGAFSNLLYPTIAQYQPDVIITTHPFATEMVSDLKEDNSITAPLICILTDYGVHRAWIAPHVDAYVVASEDMVPELQTFGVQEEKIYPFGIPVHGVFFHREDRDALLEDLRLDPALPTVLFMAGSFGVANIIKLYRELADTDVKMQIIVITGRNQRLYEAFERELAGGERLPTRLIYFTDEVEKYMHASDLLVTKPGGLTVSEALACNLPMAVFDAIPGQEEDNANFLKVHDMGVRLEKDGDFAGQISALLSEKEKLREMRENCQHFDKSQSIPNLLALIEDLVEEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI80</accession>
    <name>R6YI80_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00797</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28266">
        <property type="protein sequence ID" value="CDD28266"/>
        <property type="gene ID" value="BN815_00797"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="142"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="323"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="368"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="400"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="430"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="466" mass="50413" checksum="BD4016AF6474D3EE" modified="2013-07-24" version="1">MPHMANTQTNDFSKGSVAGNILRLALPMTVAQLINVLYSVVDRMYIGRLPDAAGNALTGLGLTFPILSIVTAFANLFGMGGSPLFSIQRGKGDRDRAQVILGNTFALLVGTGVALTVVLLVLKRPLLYAFGASDATYPYADGYLTIYLLGSVFVMISLGMNQFINAQGFGRTGMLTVLIGAVTNILLDPVFIFVLGMGVQGAALATILSQFLSAVWAVSFLRGKKALIRLEWGSMRLQPKLVWQIVSLGFSSFVMAITNSIVQVACNSTLQSFGGDLYVGVMTIINSVREVVSTPINGVTSAAQPVMGFNYGAQEYRRVRSGIVFTTIVCVVYTTAVWLLLFLFPRFFIGLFTGEEALREAAVPSMHIYFFGFFMMSLQMAGQSAAVALGRSKQAVFFSLFRKVIIVTPLTLLLPHLFGLGVNGVFLAEPISNFIGGGACYITMLLTIWREMNRREKAKLSGEAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIA6</accession>
    <name>R6YIA6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31129">
        <property type="protein sequence ID" value="CDD31129"/>
        <property type="gene ID" value="BN815_02273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005676">
        <property type="entry name" value="Asp_semi-ald_DH_pep-lack"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00978">
        <property type="entry name" value="asd_EA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="1">
        <location>
            <begin position="5"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="359" mass="39824" checksum="26C09A59508AC1AB" modified="2013-07-24" version="1">MKQYRVGIIGCTGMVGQRFATILENHPWFKVEALAASARSAGRTYEEAVGSRWAMKTPLPAALAKMPVYDAEKDIEKIVSLVDFVFCAVNMKKEEIRALEELYARHECPVVSNNSAHRSTPDVPMIIPEINADHVAVIEAQRKRLGTKRGFIAVKCNCSLQSYVPAIHPLLDLGVTKVLACTYQAISGAGKTFETMPEILDNVIPYIGGEEEKSEQEPLKIWGHVENGAIVNTTTPSITSQCLRVPVSDGHMAAVFFSLENKVSQEEIIRRWENFRGPAQELELPSAPKQFLHYFTEDNRPQPKLDRDLEGGMAVSIGRLRPDTQYDYKFVCLSHNTLRGAAGGALLMAELLAAKGYFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIG2</accession>
    <name>R6YIG2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02333</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31189">
        <property type="protein sequence ID" value="CDD31189"/>
        <property type="gene ID" value="BN815_02333"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="42" mass="4266" checksum="BE93F084DD5F0321" modified="2013-07-24" version="1">MCNGNCTWLIIILILLCCCGGNGFGFNGNNDCGCGNCGNCGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIG8</accession>
    <name>R6YIG8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoribosylglycinamide formyltransferase</fullName>
            <ecNumber evidence="2">2.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">5'-phosphoribosylglycinamide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">GAR transformylase</fullName>
            <shortName evidence="2">GART</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">purN</name>
        <name evidence="4" type="ORF">BN815_00828</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(6S)-10-formyltetrahydrofolate + N(1)-(5-phospho-beta-D-ribosyl)glycinamide = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide</text>
            <dbReference type="Rhea" id="RHEA:15053"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="EC" id="2.1.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (10-formyl THF route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GART family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.2" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28341">
        <property type="protein sequence ID" value="CDD28341"/>
        <property type="gene ID" value="BN815_00828"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00126"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08645">
        <property type="entry name" value="FMT_core_GART"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01930">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004607">
        <property type="entry name" value="GART"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00639">
        <property type="entry name" value="PurN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Formyl_trans_N" evidence="3">
        <location>
            <begin position="3"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="5'-phosphoribosylglycinamide binding" evidence="2">
        <location>
            <begin position="12"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>(6S)-10-formyltetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
        </ligand>
    </feature>
    <feature type="site" description="Raises pKa of active site His" evidence="2">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="22465" checksum="C69F31217F6068BC" modified="2013-07-24" version="1">MLNIGVLVSGGGTNLQKLIDAQAAGEIKNGQLRVVIASRPDAYALERAKKAGIEAITLRRKDYPDVDTYSQALIDALKERQVDLVVLAGFLTITGDNFVEAFRNRIINVHPALLPAFGGKGYYGLHVHEAVLARGVKVTGATVHFVNEVCDGGPIILQKAVAVKEGDTPETLQRRVMEEAEWILLPQAVSLFCQGKLSVEDGVVHIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIT7</accession>
    <name>R6YIT7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-coenzyme A synthetases/AMP-(Fatty) acid ligases</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31334">
        <property type="protein sequence ID" value="CDD31334"/>
        <property type="gene ID" value="BN815_00269"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="17"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="762" mass="86295" checksum="71D2C7D388AAA300" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJN8</accession>
    <name>R6YJN8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FeS cluster assembly scaffold protein NifU</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000104">
        <property type="protein sequence ID" value="CDD28771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28771">
        <property type="protein sequence ID" value="CDD28771"/>
        <property type="gene ID" value="BN815_00949"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06664">
        <property type="entry name" value="IscU_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017787">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002871">
        <property type="entry name" value="NIF_FeS_clus_asmbl_NifU_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10093">
        <property type="entry name" value="PTHR10093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01592">
        <property type="entry name" value="NifU_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03419">
        <property type="entry name" value="NifU_clost"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NifU_N" evidence="1">
        <location>
            <begin position="2"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="15382" checksum="4801864964566512" modified="2013-07-24" version="1">MAYSAKVMDHFANPRNVGEMKDYSGVGEVGNPKCGDIMRMYIKVEGNVITDVSFMTFGCGAAIATSSMATELIKGKTIDEALKLTNKAVMEALDGLPPVKVHCSVLAEQAIKAAVADYYRSQGIDPTPIVGELTECEECACDAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKR0</accession>
    <name>R6YKR0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">High molecular weight rubredoxin (Nitric oxide reductase NADH:FprAoxidoreductase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000126">
        <property type="protein sequence ID" value="CDD29161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29161">
        <property type="protein sequence ID" value="CDD29161"/>
        <property type="gene ID" value="BN815_01075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="8"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="171" mass="18790" checksum="ACA815863A824986" modified="2013-07-24" version="1">MAMDEKALYKITYGLYVVSAQAEGQRSGCVVNTLQQVTAEPVRLAVTVNKDSLTCQLIQKAGRFAAVALDQRADMMAIGRFGFRTGRDMDKFEGIPYKEDAAGMPYPTATACAHYSCKVEQTVDLGTHLLFVGLAEESEILTEDEPLTYSYYRNVIKGLTPKGAPSYQAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM37</accession>
    <name>R6YM37_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ADP-ribosylglycohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29656">
        <property type="protein sequence ID" value="CDD29656"/>
        <property type="gene ID" value="BN815_00100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005502">
        <property type="entry name" value="Ribosyl_crysJ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036705">
        <property type="entry name" value="Ribosyl_crysJ1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03747">
        <property type="entry name" value="ADP_ribosyl_GH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101478">
        <property type="entry name" value="SSF101478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="263"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="287" mass="32239" checksum="0A4BCF27C8591808" modified="2013-07-24" version="1">MYGAILGDIAGSRFEFSRPQNFDWKTTDFFGGMSTYTDDTVLTVATKYAVLTGTPYAKAYSLFGKRYSRVGYGTMFKNWLNSSSQKGYNSFGNGAAMRVSYIGWHYPTLEEVGDQAVFSALVTHNHPEGVKAAQATAEAVFLARTGSTKKEIVRHLHKKFGYVITTPLFLYRPFGKFDDTAMGSMPLAIRCFVESEDWQSCIRNVFSVKCDTDTVACIAGGIADAYYGGTGLEEDTLLKRFLIKPNERGEFDTFLYEWATKTPEQVRQEREEKAKREKEEKEKGGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMX4</accession>
    <name>R6YMX4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01319</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29946">
        <property type="protein sequence ID" value="CDD29946"/>
        <property type="gene ID" value="BN815_01319"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HATPase_c" evidence="1">
        <location>
            <begin position="29"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="146" mass="15778" checksum="BFD884235ECA3143" modified="2013-07-24" version="1">MSMLHLTYQVPGDDFTRAGEASGDVKHKLKKLGYEPDAVRRVSIAMYEGEINMVIHANGGEATVDIDPDRVDIILKDQGPGIADVDQAMQAGWSTAPDNVRALGFGAGMGLPNMKKYSDEMSIDSVVGEGTTVYMTVFPGRKEEGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YN54</accession>
    <name>R6YN54_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01336</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000187">
        <property type="protein sequence ID" value="CDD29996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29996">
        <property type="protein sequence ID" value="CDD29996"/>
        <property type="gene ID" value="BN815_01336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="25948" checksum="A22EAD8A4AAB9567" modified="2013-07-24" version="1">MIRAILFDAYGTLFDTGTGSVQAAAEILARNGRQDLSPAEFYAQWKRRHHRRMKNLRPFQREAELYALDLEELYQEYGFSRNAREDVAVMLQYQGTRVAYPEVKRVLDSLLSRYQLCVASTTDTAPLEQDLKRAGLVFHRVFTSQSLKVYKPDHEFYTTILHALSLRPAEALFVGDSLTDDVQGPQGVGMRACWLNRKGVVPKGVKPAYQIHSLEQLPSVLESIGRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPT7</accession>
    <name>R6YPT7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter substrate-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01792</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30581">
        <property type="protein sequence ID" value="CDD30581"/>
        <property type="gene ID" value="BN815_01792"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437709" evidence="5">
        <location>
            <begin position="37"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="6">
        <location>
            <begin position="78"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="24"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="24"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="305" mass="31635" checksum="1FE420CC980EB0AF" modified="2013-07-24" version="1">MKKIASLLAAVMLLTAALAGCGNSGSGSSTTDTSSASSTASQSSTAEDSSAAEGETSSEASATEAGDYGEFTTIEEGKLIMATNAQFPPYELVSDGEGFNGTGFEGIDVEIASAIADKLGLELQIDDMDFDSALVAVQNDAADVVLAGLSYSEERDEVLDFTDSYATGVQVVIVKEGSDVTMDNLGEKMIGTQRGTTGYIYASDTPENGGYGEDHVSAYDNGATAVQALVNGQVDAVIIDEAPAKEFVAANEGLTILPGNWVEEQYCAAVNEGNTELLNAINTALNELMDDGTVQEILDKYITAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPU5</accession>
    <name>R6YPU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Haloacid dehalogenase superfamily subfamily IA variant 3 with third motif having DD or ED</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01802</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000282">
        <property type="protein sequence ID" value="CDD30591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30591">
        <property type="protein sequence ID" value="CDD30591"/>
        <property type="gene ID" value="BN815_01802"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="130" mass="13733" checksum="1625F95A05557F9D" modified="2013-07-24" version="1">MATASNREGVLLALERLGMLPLVDYFTTCTEVGKSKEHPDIFTTCAAQFGAAPQETVVFEDSAYAIRTARAAGFPVVAVEDAISTQGKTGDETREGLARLANLVIADYGQLIGRLTPAEDLSQGLGELLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPW1</accession>
    <name>R6YPW1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell Wall Hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30611">
        <property type="protein sequence ID" value="CDD30611"/>
        <property type="gene ID" value="BN815_01822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.2520">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011105">
        <property type="entry name" value="Cell_wall_hydrolase_SleB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042047">
        <property type="entry name" value="SleB_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07486">
        <property type="entry name" value="Hydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_2" evidence="1">
        <location>
            <begin position="19"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="144" mass="16338" checksum="C1DB136304DD82AA" modified="2013-07-24" version="1">MAYSDLELLARIVECEAGGEGETGMKAVASVVMNRVQVDYGEYGRLYTIREVVYQRGQFTCAMETVGGVYNMQNIYNMRPTQVHYDIANWAIAGNRLTNLGFALWFYNPFSVTCRDNFPSRVGEFVIRIGDHCFYNPTPAYAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQK9</accession>
    <name>R6YQK9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02048</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30861">
        <property type="protein sequence ID" value="CDD30861"/>
        <property type="gene ID" value="BN815_02048"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="24406" checksum="920E2FCE7C484309" modified="2013-07-24" version="1">MADILQHFAQLHELVANDLALFVQGHLQHVAFCHLHVAHALEAGGEHGAHLAAQALAQVLQAGADGQAVLGESGLAAAIGQLLEDFAHGHVDGVTYQVGVQALQQSLAGQDFGGHSGGVGHAGASQGLHQGFLDNAFLHVQGQLARALLGSAPAHAVGQAGNIGDLVGLNPLALLRDGSRAVMGALLHRAHIFHFMGIVHIGTPFAFCFLLGEGAPKIPICVHYNRKKPLIQELC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRB8</accession>
    <name>R6YRB8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">1-deoxy-D-xylulose-5-phosphate synthase</fullName>
            <ecNumber evidence="10">2.2.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">1-deoxyxylulose-5-phosphate synthase</fullName>
            <shortName evidence="10">DXP synthase</shortName>
            <shortName evidence="10">DXPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dxs</name>
        <name evidence="12" type="ORF">BN815_02264</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:12605"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="10">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the transketolase family. DXPS subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.7" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31111">
        <property type="protein sequence ID" value="CDD31111"/>
        <property type="gene ID" value="BN815_02264"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00064">
        <property type="reaction ID" value="UER00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052865">
        <property type="term" value="P:1-deoxy-D-xylulose 5-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00315">
        <property type="entry name" value="DXP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="11">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="114"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="146"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="628" mass="69219" checksum="52AC35248C98856B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRZ9</accession>
    <name>R6YRZ9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000409">
        <property type="protein sequence ID" value="CDD31351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31351">
        <property type="protein sequence ID" value="CDD31351"/>
        <property type="gene ID" value="BN815_00283"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="31" mass="3565" checksum="58EA004A2A83B8BD" modified="2013-07-24" version="1">MDRLQPFLVGPSTTPFPGTTLRERDTTRFQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS06</accession>
    <name>R6YS06_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00288</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000410">
        <property type="protein sequence ID" value="CDD31356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31356">
        <property type="protein sequence ID" value="CDD31356"/>
        <property type="gene ID" value="BN815_00288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004869">
        <property type="entry name" value="MMPL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03176">
        <property type="entry name" value="MMPL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="265"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="345"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="517"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="542"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="567"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="610"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="645"/>
            <end position="669"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="42"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="MMPL" evidence="7">
        <location>
            <begin position="414"/>
            <end position="669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="690" mass="75337" checksum="6B72215BAC146A02" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS53</accession>
    <name>R6YS53_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00327</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31396">
        <property type="protein sequence ID" value="CDD31396"/>
        <property type="gene ID" value="BN815_00327"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041581">
        <property type="entry name" value="Glyoxalase_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18029">
        <property type="entry name" value="Glyoxalase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="13938" checksum="655438B0EEF80651" modified="2013-07-24" version="1">MEIHLRTVVVDCEDGRRAANFYSKLLGWPITMEDNGWVLLRDPNGGTGLSFETEENYVRPVWPEEPGKPMKMLHLDFQVDDLQAAEAHALACGAVKSPRQFLEDQGVIVFFDTEGHPFCLFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z9W4</accession>
    <name>R6Z9W4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00560</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000028">
        <property type="protein sequence ID" value="CDD27267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27267">
        <property type="protein sequence ID" value="CDD27267"/>
        <property type="gene ID" value="BN815_00560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426780" evidence="1">
        <location>
            <begin position="28"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="105" mass="11242" checksum="72380BC92A182BAA" modified="2013-07-24" version="1">MKRRKILAAASSLAVLAALLTGCGAQPQESSVTAGVLTLRVNPEIAIHYNQSGKVVALEGDNQDGREIVEAYPDYIGKDCEVVVQELVEEIHAAGWRKATRPATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAB6</accession>
    <name>R6ZAB6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cna B domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00621</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27407">
        <property type="protein sequence ID" value="CDD27407"/>
        <property type="gene ID" value="BN815_00621"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013784">
        <property type="entry name" value="Carb-bd-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041033">
        <property type="entry name" value="Prealbumin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041100">
        <property type="entry name" value="TQ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17802">
        <property type="entry name" value="SpaA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18202">
        <property type="entry name" value="TQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49452">
        <property type="entry name" value="SSF49452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="348"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="TQ" evidence="4">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="SpaA" evidence="3">
        <location>
            <begin position="60"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="SpaA" evidence="3">
        <location>
            <begin position="144"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="SpaA" evidence="3">
        <location>
            <begin position="236"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="310"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="1">
        <location>
            <begin position="316"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="376" mass="40431" checksum="F0A92815085028ED" modified="2013-07-24" version="1">MTYTLDASLFAGTSIVVFETLYQDGVEIAAHADINDEAQTITIEPRGGLLIQKTSEDGVLEGFTFLVEGEGYSETFTTDGAGKIYIEDLSPGEYTITEQESELTARYEIPAGQTVEVTADQATTVEFYNALLRGKIIGHKTGAKQAPLKGVTFGLFDAKATEFTEETAIEVTTTNESGEFSFEAPYGSFQVMELATLPGYLTMKEPIAVEVNAAEVELEPIANNQTIVHISKVDAETGEELPGATLELYAPDGSLIETWESTDIPHVITGLPVGEGYVLKETAAPEGYQLAEDITFAVEETSEIQFVGMVDEPSPEEPKEPDEPETPDQPDTPDEPTPNVPQTGGSRAALWVGALLILALGGLGITLILLKKQNKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAI2</accession>
    <name>R6ZAI2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Mannose-6-phosphate isomerase</fullName>
            <ecNumber evidence="3">5.3.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00641</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-mannose 6-phosphate = D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:12356"/>
            <dbReference type="ChEBI" id="CHEBI:58735"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="5.3.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the mannose-6-phosphate isomerase type 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.8" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27467">
        <property type="protein sequence ID" value="CDD27467"/>
        <property type="gene ID" value="BN815_00641"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004476">
        <property type="term" value="F:mannose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001250">
        <property type="entry name" value="Man6P_Isoase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014628">
        <property type="entry name" value="Man6P_isomerase_Firm_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01238">
        <property type="entry name" value="PMI_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036894">
        <property type="entry name" value="PMI_Firm_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="193"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036894-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR036894-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="322" mass="35153" checksum="BE9D70DF91B9D38B" modified="2013-07-24" version="1">MKLEKLAPAFQDYLWGGTKLRDVYGKRCDFDKVAESWELSTHPAGESTLAGGERDGLPLGQYFQQFPQALGKNAAAFESFPVLIKLIDAKEPLSIQVHPSDEYALRVEGEYGKTEMWVIVDCDPGAFLYFGVNRPVSKEEFRQRIENNTVLEVLNKVEVHPGDVFFIQSGTIHAIGAGILICEIQQNSNCTYRVYDYDRRGADGKPRPLHIDKALDVCTLEPSDTASHLGPVLSCAGGTAQKLRECAYFSTQKLRVEEALTLEAGEESFLSLVCVEGGGLLCGPENTLEFTAGESLLVPAGTGKVSLRGDCTVIQTTVPGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBG1</accession>
    <name>R6ZBG1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA methylase PF01170 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000063">
        <property type="protein sequence ID" value="CDD27817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27817">
        <property type="protein sequence ID" value="CDD27817"/>
        <property type="gene ID" value="BN815_00721"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000241">
        <property type="entry name" value="RNA_methylase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01170">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01261">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UPF0020" evidence="1">
        <location>
            <begin position="90"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="271" mass="30436" checksum="2B6D6FEDA60AEA00" modified="2013-07-24" version="1">MPDCQAIIKKAIVERLKAKYKLSWFAESGALHRVRFRILKDQVSVLVDTSGEGLHKRGYRALSNDAPMKETLAASLCQLSRLRQDGHLIDPFCGSGTILIEGALLARNIAPGLGRAFTAESWGSVPGQLWQQERERARSLERRDTGFTAQGFDVDPAAVELTLANAQKAGVGDCITASVRDVRDFTQEGPYGCVVCNPPYGERLLDVRQAQELYRALGQVFRPRRGWSFGVISPDPEFESLFGRRADKRRKLYNGMIQCQYYQYFRGSDKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZBW8</accession>
    <name>R6ZBW8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydrolase NUDIX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00737</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000073">
        <property type="protein sequence ID" value="CDD27972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27972">
        <property type="protein sequence ID" value="CDD27972"/>
        <property type="gene ID" value="BN815_00737"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="2"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="136" mass="15521" checksum="1EFAF612F9F8A4A4" modified="2013-07-24" version="1">MKKEKSCGAVVYRQGETGVEVLMIKHKNGGHWAFPKGHVEKKETEPETALREIKEETGLKVELDTGFREMVTYSPKPNVMKDVIYFAAKAKKDSARPQPEEVLELRWEPPQEALALVTYATDREVLQAFLRYLAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDI0</accession>
    <name>R6ZDI0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ParB-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00876</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28567">
        <property type="protein sequence ID" value="CDD28567"/>
        <property type="gene ID" value="BN815_00876"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_ParB" evidence="1">
        <location>
            <begin position="78"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="192" mass="21626" checksum="92686AF3E01D4058" modified="2013-07-24" version="1">MAGLTEVPAVIREMTDAEEMLFALIENLQREDLTPLEEARGYRTLIETQDFTQEEVSQAVGKSRPAITNALRLLNLPEDIQQMLENGEITAGHARTLLSFKTEDGMRLGAKKAKEGASVRELEALAKRLNEEKEGPVKAPRKNQYYEEAQLAVGEYLNRKVKVAGSKKKGTLQIEFYGEEDLQNLLHDLHMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEZ7</accession>
    <name>R6ZEZ7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cobalt transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01042</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000120">
        <property type="protein sequence ID" value="CDD29062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29062">
        <property type="protein sequence ID" value="CDD29062"/>
        <property type="gene ID" value="BN815_01042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="98" mass="10716" checksum="D2B0A25B7665C18B" modified="2013-07-24" version="1">MAISVTLRYFPAIREEVGYIRDAMKLRDIRGLARLECTVMPLMVSATETAEELSAAAVTRGIENPARKTSAVSLRLSPLDFFGMLAGLALLVLSFVIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF51</accession>
    <name>R6ZF51_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">S-adenosylmethionine decarboxylase proenzyme</fullName>
            <shortName evidence="10">AdoMetDC</shortName>
            <shortName evidence="10">SAMDC</shortName>
            <ecNumber evidence="10">4.1.1.50</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="10">S-adenosylmethionine decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="10">S-adenosylmethionine decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="10" type="primary">speD</name>
        <name evidence="11" type="ORF">BN815_00087</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>H(+) + S-adenosyl-L-methionine = CO2 + S-adenosyl 3-(methylsulfanyl)propylamine</text>
            <dbReference type="Rhea" id="RHEA:15981"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="4.1.1.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="10">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Amine and polyamine biosynthesis; S-adenosylmethioninamine biosynthesis; S-adenosylmethioninamine from S-adenosyl-L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Heterooctamer of four alpha and four beta chains arranged as a tetramer of alpha/beta heterodimers.</text>
    </comment>
    <comment type="PTM">
        <text evidence="10">Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.50" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29117">
        <property type="protein sequence ID" value="CDD29117"/>
        <property type="gene ID" value="BN815_00087"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00331">
        <property type="reaction ID" value="UER00451"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004014">
        <property type="term" value="F:adenosylmethionine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006557">
        <property type="term" value="P:S-adenosylmethioninamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00465">
        <property type="entry name" value="AdoMetDC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003826">
        <property type="entry name" value="AdoMetDC_fam_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009165">
        <property type="entry name" value="S-AdoMet_deCO2ase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016067">
        <property type="entry name" value="S-AdoMet_deCO2ase_core"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33866">
        <property type="entry name" value="PTHR33866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02675">
        <property type="entry name" value="AdoMet_dc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001356">
        <property type="entry name" value="SAM_decarboxylas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56276">
        <property type="entry name" value="SSF56276"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03331">
        <property type="entry name" value="SAM_DCase_Eco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 10" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="2 10" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="7 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 10" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 10" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="8 10" id="KW-0704">Schiff base</keyword>
    <keyword evidence="4 10" id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_5023457801" description="S-adenosylmethionine decarboxylase beta chain" evidence="10">
        <location>
            <begin position="1"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023457802" description="S-adenosylmethionine decarboxylase alpha chain" evidence="10">
        <location>
            <begin position="102"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="10">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for processing activity" evidence="10">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor; for catalytic activity" evidence="10">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage (non-hydrolytic); by autolysis" evidence="10">
        <location>
            <begin position="101"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser); by autocatalysis" evidence="10">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD29117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="29179" checksum="DF8C43FACB26FCA8" modified="2013-07-24" version="1">MGEKLRLYGFNNLTKALSFNIYDVCYAKTPREQRDYIAYIDEQYNSERLTNILTTLTDMIGAKVLNIARQDYDPQGASVTILIAEGSMTPAGDTVLGHLDKSHVTVHTYPEYHPETFLATFRVDIDVATCGEITPLSTLDYLIGSFDSDIITMDYRVRGFTRDLDGKKLFLDHDVVSIQHYIDPEILRRYDAVDINVYEANLFHTKMMVKDIDLQNYLFNTDVYELPPRTRLEIMQNLRREMIEIFSGRNIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZF74</accession>
    <name>R6ZF74_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29137">
        <property type="protein sequence ID" value="CDD29137"/>
        <property type="gene ID" value="BN815_01069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007530">
        <property type="entry name" value="Aminoglycoside_adenylylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04439">
        <property type="entry name" value="Adenyl_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="240" mass="27755" checksum="8A1EDF28FEC36F25" modified="2013-07-24" version="1">MQRTDENQLFHEHFPRLAIYLMQFADGNRIDLTIAPVEDYRPYCFDDKLSVVLLDKDGFLPHLPPPDESTHAVERPSAQVFQECRNEFWWTAPYMSKGLWRGQLPYAQHILEECTRPMLRLMLSWLAGSQKGFPVFPGKAGWNLENLLPQGVWQRYLATYAPCSRMPLWDALREACVLFTQASRHAAKALGYSWQDSWDESVPLFMEKTQEDIAALAPAESWDGELLRQIEAHKGKEQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFX6</accession>
    <name>R6ZFX6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01134</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000144">
        <property type="protein sequence ID" value="CDD29367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29367">
        <property type="protein sequence ID" value="CDD29367"/>
        <property type="gene ID" value="BN815_01134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="430" mass="44625" checksum="D06460CA69FCC21A" modified="2013-07-24" version="1">MQQGFHLFRGARVGEEGLVAHAPHHDAGMVPVGANHLLQRAQAAFLKLCLVLLADGVGAGGPVALLLGAACAPEAVLRPEQHALAVALLGEHRVVGVVGAPDEVHAAVLNELHIPGNTGVGDGVGPARVVLVDVGPVDFIGLPVKEEALFGRKGEPPHAEGCLLALGLLALHREGGLHGVELRALGAPQVGGKHLQLLGDGFLFPRGGFPAGLRLGHRFPLVLHHGRKPEGPFLGGEVLHLGLHLHQRPLPGGLGRGHPDALPGHPHRVGDKQAHVPVDAAVEHVLPGPGRLAGIPQVVHPHEHQVLPGAQQLGHIHRKGGVAALVAAGQLAVDVDLRRLESRLELQGHPLAKPGLGQEKGLPVAAVAHIELALHKVGDAKGVGQADVRPGAVVKGRGGCRGKIPVAEFPPLVPQNLFSCHSFFSFYPFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGE8</accession>
    <name>R6ZGE8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enterochelin esterase and related enzymes</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01184</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000158">
        <property type="protein sequence ID" value="CDD29517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29517">
        <property type="protein sequence ID" value="CDD29517"/>
        <property type="gene ID" value="BN815_01184"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="395" mass="44291" checksum="91992592404AC26E" modified="2013-07-24" version="1">MANLEQFPSAALNGAYYDTPVAFEPQLPMGRPAGTNPFADSDTVVPPGAVLLEGGKLRLNFLAPTAAKVDAVLRYRERHDLEKGENGLWTAEIDAGDGGFIPILFHVDGVEVLNPLAPVGYGSSRPINYVDVPQPGVDFYLCKDVPHGTVTQDYYFAPSVGLLKSCLVYTPAGYMKDDTQTYPVLYLQHGHGENEKCWVHQGRANFILDNLIAEGKMPPCVVVMNNGMVQREQEGLRVLETNAITRLLLEDCIPYIQSHYRVRTDKWSRAMAGLSMGSMQTSMVTLGHPDLFGYAGVFSGFVGALKIGQSMPDQSYLKELDDKEKFQQDFKVFFRGCGDTDYIALDRFEKDRELFREKGLAPEDCPAHVEKIYHGEHEWNVWRMCLRDFCQLLFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHB7</accession>
    <name>R6ZHB7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00108</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000179">
        <property type="protein sequence ID" value="CDD29852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29852">
        <property type="protein sequence ID" value="CDD29852"/>
        <property type="gene ID" value="BN815_00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="7440" checksum="770D95FEE6C9C565" modified="2013-07-24" version="1">MVIYENMCIQYEDEALCKRRYDSLRAFRTAHQQQDIFDLYRRESCVYILRQKKDSRRKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZI45</accession>
    <name>R6ZI45_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transporter gate domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000195">
        <property type="protein sequence ID" value="CDD30117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30117">
        <property type="protein sequence ID" value="CDD30117"/>
        <property type="gene ID" value="BN815_01376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="14512" checksum="8453BD3FC50928D0" modified="2013-07-24" version="1">MAEVGAAALPVLVGLILLFGYVKGVPVFDTFLSGAKEGLRTSLKLLPTLVGLLVAVSMVRASGLLELLCVPLAPVAESLGVSPELLPLALLRPISGSGASAYTLDLLQRFGPDSPTGQMASVLSSSTETTFYAVAVYFGACG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIH5</accession>
    <name>R6ZIH5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sortase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30257">
        <property type="protein sequence ID" value="CDD30257"/>
        <property type="gene ID" value="BN815_01500"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05827">
        <property type="entry name" value="Sortase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005754">
        <property type="entry name" value="Sortase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042002">
        <property type="entry name" value="Sortase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023365">
        <property type="entry name" value="Sortase_dom-sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04203">
        <property type="entry name" value="Sortase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63817">
        <property type="entry name" value="SSF63817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01076">
        <property type="entry name" value="sortase_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="31164" checksum="56E744F574EC0D47" modified="2013-07-24" version="1">MKKQASKKNRMTLILLLAVLLAGLSLLLYPMVADYWNSMHQSQAIASYQETVAEMDDETYEALWQAAGDYNSGLLGNANRFQPTQEEHQRYEELLDVSGSGVMGYVEIPGIDVSLPIYHGTSEEVLQVAVGHIEGSSLPVGGESTHCVISGHRGLPSARLFTDLDQLSEGDIFTLRVLDETLTYEVDQIHVVEPDDITQLEIVEGEDLCTLVTCTPYGVNSHRLLVRGHRVENREDGVMRIIADAMQIDPRFVAPVIGAPILLAALLVMILRPLRRRKRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIN5</accession>
    <name>R6ZIN5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glutamate--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Glutamyl-tRNA synthetase</fullName>
            <shortName evidence="8">GluRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gltX</name>
        <name evidence="12" type="ORF">BN815_01551</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)</text>
            <dbReference type="Rhea" id="RHEA:23540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.17" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30317">
        <property type="protein sequence ID" value="CDD30317"/>
        <property type="gene ID" value="BN815_01551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004818">
        <property type="term" value="F:glutamate-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00808">
        <property type="entry name" value="GluRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00022">
        <property type="entry name" value="Glu_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045462">
        <property type="entry name" value="aa-tRNA-synth_I_cd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020751">
        <property type="entry name" value="aa-tRNA-synth_I_codon-bd_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008925">
        <property type="entry name" value="aa_tRNA-synth_I_cd-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004527">
        <property type="entry name" value="Glu-tRNA-ligase_bac/mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033910">
        <property type="entry name" value="GluRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19269">
        <property type="entry name" value="Anticodon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48163">
        <property type="entry name" value="SSF48163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00464">
        <property type="entry name" value="gltX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="10">
        <location>
            <begin position="3"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_2" evidence="11">
        <location>
            <begin position="333"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="10"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="251"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF19269"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="483" mass="54397" checksum="955FC560972DF86F" modified="2013-07-24" version="1">MAEVRTRFAPSPTGFMHVGNLRTALYEYLVAKSQGGKFVLRIEDTDRERLVEGAQDVIYKTLEQVGLQHDEGPDVGGAYGPYIQSQRKDLYKPYAQQLVKEGKAYYCFCTKERLESLHNEEGIGGYDRHCRDLPQEEVQRLLDAGTPYVIRQKVPLTGSTTFEDAVFGSITIENKEIEDQVLLKADGYPTYNFANVIDDHLMHITHVVRGSEYLTSTPKYNLLYEAFGWEIPTYVHLPLIMGKNEDGSVSKLSKRHGSTSFEGLVAEGYLPQVITNYIALLGWAPKDNQEIFSLAELERAFSIDGISKSPAVFDYDKLNWFNAEYIKAMGEEEFTAHAMPYYKEVFGEQEKPWEVLYSILPARITKFQEIPGLLHFFQALPDYPVDFFVNKKSKTNLENAPQMLEAALPVLEALPQWDVNAIHDAMIALAGELGVKNGTLLWPVRIAAAGTLVTPGGAMEILTLLGREEALRRLRLGLEKLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIP1</accession>
    <name>R6ZIP1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl hydrolase family 31</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01556</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the glycosyl hydrolase 31 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000220">
        <property type="protein sequence ID" value="CDD30322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30322">
        <property type="protein sequence ID" value="CDD30322"/>
        <property type="gene ID" value="BN815_01556"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000322">
        <property type="entry name" value="Glyco_hydro_31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01055">
        <property type="entry name" value="Glyco_hydro_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="670" mass="76112" checksum="963FA31A0B505F4B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIS4</accession>
    <name>R6ZIS4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000230">
        <property type="protein sequence ID" value="CDD30357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30357">
        <property type="protein sequence ID" value="CDD30357"/>
        <property type="gene ID" value="BN815_01584"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="1">
        <location>
            <begin position="10"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="173" mass="18735" checksum="384C02443891C133" modified="2013-07-24" version="1">MENKMLELLKTRRSVRSYKPEQIAAQELDAVLEAGTYAPTGMGMQSPVIVAVQDAQTRQAVMELNQQARGGSGDPYYGAPTIVLVLADPERGTCVEDGACVLCNMMNAAHSLGLASCWIHGEREMFQLPEGKALLRQWGLPETLRGVGSIALGYAAGPLPQPKPRKEGYIHKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIX6</accession>
    <name>R6ZIX6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable cell division protein WhiA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">whiA</name>
        <name evidence="7" type="ORF">BN815_01633</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in cell division and chromosome segregation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the WhiA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30412">
        <property type="protein sequence ID" value="CDD30412"/>
        <property type="gene ID" value="BN815_01633"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043937">
        <property type="term" value="P:regulation of sporulation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.28.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01420">
        <property type="entry name" value="HTH_type_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027434">
        <property type="entry name" value="Homing_endonucl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003802">
        <property type="entry name" value="Sporulation_regulator_WhiA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023054">
        <property type="entry name" value="Sporulation_regulator_WhiA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039518">
        <property type="entry name" value="WhiA_LAGLIDADG_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37307">
        <property type="entry name" value="PTHR37307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02650">
        <property type="entry name" value="HTH_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14527">
        <property type="entry name" value="LAGLIDADG_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55608">
        <property type="entry name" value="SSF55608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00647">
        <property type="entry name" value="DNA_bind_WhiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 4" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LAGLIDADG_WhiA" evidence="6">
        <location>
            <begin position="120"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_WhiA" evidence="5">
        <location>
            <begin position="217"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="34373" checksum="C73D27BF6C00D80A" modified="2013-07-24" version="1">MSFSSNIKTELCKVEFKRECCLRAECYGAWLFSRCFTRKEAAFVTENGAVARRLLELAAAGAGVSGELTFGVSRRRKPAYRVSLPDEGSREAMLLEFGHTGRETSLRLNRANLENECCAAAFLRGAFLTCGTATDPNKEYHLEFAVPHKNLANGLFTLLSEVEAFPLSPALASRKGGYVVYLKESGPIEDLLTYLGAPSAAMELMQVKMYKEVKNNINRKTNFETANMDKTYSASARQVAAIAAISDTQGLSSLPEELQELAQLRLAHPDMTLRELSGRLGLTRSGVNHRLQRLLRLGEKILEEKGVDNLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJD6</accession>
    <name>R6ZJD6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Response regulator receiver domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01775</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30562">
        <property type="protein sequence ID" value="CDD30562"/>
        <property type="gene ID" value="BN815_01775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="5"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="7">
        <location>
            <begin position="131"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="131"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD30562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="231" mass="26336" checksum="7DEC6A3CA73796EE" modified="2013-07-24" version="1">MATGKILIVDDDTNICELLRLYIEKEGYEASIANDGETALKMFDSVNPDLVLLDIMLPGLDGWQVCREIRKKSSCPIIMLTAKGEVFDKVLGLELGADDYVVKPFETKEVIARIGAVLRRSGRHSEDKEENKVVTYENLSINLTNYELKVKGVQVDTPRKEMELIYHLASNPNQVFTRDQLLDEVWGFDYYGDSRTVDVHVKRLREKLEGASDKWALKTVWGVGYKFEVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJZ2</accession>
    <name>R6ZJZ2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30772">
        <property type="protein sequence ID" value="CDD30772"/>
        <property type="gene ID" value="BN815_01976"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="42"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="271" mass="29463" checksum="9F1572A39D1288E1" modified="2013-07-24" version="1">MNKIQAKAPDPIPFGKEAFGPQAGTTVRWLGGAGALVNCRGTNILIDPVLEGFDMPLLVESPLQVEDVPQVDAVLLTHSDNDHFSRDTCRDLAPVCGAYHAPRYVAGLCRDMGLPGVGHGIGESFTVGPVKVTLTPADHAWQNEVPGAADRVFLPEDFCGFWLDTPDGSLWAVGDSRLLEEHLHMPAPDLMLFDFSDSEWHIGLDNAVKLANAYPHTPLLLWHWGCVDAPDMTPFNGDPADLMARIQNPERALVLAPGEPLELRPLNQKKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK05</accession>
    <name>R6ZK05_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01991</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30787">
        <property type="protein sequence ID" value="CDD30787"/>
        <property type="gene ID" value="BN815_01991"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="8928" checksum="7E173E254F0235C5" modified="2013-07-24" version="1">MTEFTQVATIPKTAARCKAEGIGLTENQLRTLCARGELKHTQMGKKSLIYWPNLLELLERGTPQEETPVVYGKIRRIAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK20</accession>
    <name>R6ZK20_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30802">
        <property type="protein sequence ID" value="CDD30802"/>
        <property type="gene ID" value="BN815_00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="451" mass="47548" checksum="367F7DCE86EB7AC2" modified="2013-07-24" version="1">MSTLLHSNSVLHTSHAVLSSDVQGHRSAVVHGSDTALQHILAAISVQFHLSTGGGSKGSNQALHIGAIGHVDSDVTAGDAAADLASQREAQDVGVSAGIGIGQLESILGVRVLGRASQTVFSTHQESVDLLALGLTSAINLHFVIVAADKNQTPVISVLGFRNAISIYIAIGVNGTLRIFIAIGGGIGAGILAQIEGDEHSLFNIQVIFINGQAVRNGASDLVSSDGEVIEGAHRQGLQLCLILSKIGLLNDFIGDTVRRNLLSSVSKIIASVDLNIIIRVLILVQDSITGYFLRQNQDLIAAVVVRLTIGEGTVSCNHRGSQLILVYIVGQRGKQHVIFIGICSFPNKCNAIVFHLIGGNNVLPPFLLRIILQAGRNQSGHSGVGQVSVGLHVGIKGVLISDCAESRLIIQIGLSSELQISQSHVSRSRICQLDDLGKLSFQNFHWKTGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK43</accession>
    <name>R6ZK43_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4091 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000326">
        <property type="protein sequence ID" value="CDD30827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30827">
        <property type="protein sequence ID" value="CDD30827"/>
        <property type="gene ID" value="BN815_02014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025150">
        <property type="entry name" value="GH123_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13320">
        <property type="entry name" value="DUF4091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4091" evidence="1">
        <location>
            <begin position="426"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="541" mass="60249" checksum="0F5BE5458EC267D1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK63</accession>
    <name>R6ZK63_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02034</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30847">
        <property type="protein sequence ID" value="CDD30847"/>
        <property type="gene ID" value="BN815_02034"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="22"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="123"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="185" mass="21444" checksum="383016F67566D56D" modified="2013-07-24" version="1">MKDREIVELFWKRSPQAVDALAMAYGTQLRRLAGNILSNPQDAEECVNDAYLGLWDSIPPARPQPLLPYALRVVRNLCLKRYHWNIAQKRNSQFDLAYSELESCLADHTGPEQQQDAKELRAALEGFLRGLSQRDRVLFLGRYWYACTHKELALRLGMTENNVAVRLSRLREKLRKYLLEKGVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKN3</accession>
    <name>R6ZKN3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP synthase subunit delta</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">ATP synthase F(1) sector subunit delta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">F-type ATPase subunit delta</fullName>
            <shortName evidence="6">F-ATPase subunit delta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">atpH</name>
        <name evidence="7" type="ORF">BN815_02156</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.</text>
    </comment>
    <comment type="function">
        <text evidence="6">This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ATPase delta chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000356">
        <property type="protein sequence ID" value="CDD30997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30997">
        <property type="protein sequence ID" value="CDD30997"/>
        <property type="gene ID" value="BN815_02156"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.520.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01416">
        <property type="entry name" value="ATP_synth_delta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026015">
        <property type="entry name" value="ATP_synth_OSCP/delta_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000711">
        <property type="entry name" value="ATPase_OSCP/dsu"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11910">
        <property type="entry name" value="PTHR11910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00213">
        <property type="entry name" value="OSCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00125">
        <property type="entry name" value="ATPASEDELTA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47928">
        <property type="entry name" value="SSF47928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01145">
        <property type="entry name" value="ATP_synt_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0139">CF(1)</keyword>
    <keyword evidence="2 6" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="3 6" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 6" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD30997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="172" mass="19280" checksum="6315DC49B23599E2" modified="2013-07-24" version="1">MRTLETRYALALLDLTQDEAGLETAAGLLTGDAALWQALNNPCIPGKEKDRVLCRLLEGTVGKELLSFFRLLCARERLALLPAIQGRYHQLKLEREGGAQAVYCCARQPAPADLARIEEVLKRRHGLSKVEFQVKLEPELLGGFVIHLQGTTYDKSVRGMLRGLRRSLKERE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKZ2</accession>
    <name>R6ZKZ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00201</name>
        <name evidence="6" type="ORF">BN815_00602</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000034">
        <property type="protein sequence ID" value="CDD27352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27352">
        <property type="protein sequence ID" value="CDD27352"/>
        <property type="gene ID" value="BN815_00602"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31117">
        <property type="protein sequence ID" value="CDD31117"/>
        <property type="gene ID" value="BN815_00201"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14659">
        <property type="entry name" value="Phage_int_SAM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="5">
        <location>
            <begin position="69"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="186"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="405" mass="46589" checksum="BC56FDDAF895B21A" modified="2013-07-24" version="1">MPQKRLTTNGNVFRRTDGRWQSVIWYFDEQGIKRRKVFSSKTKTEAQQKITTYIAQFNAEVRNSDESNKTVRESLTRWLQVFKFPSVERTTYDRLECTAQHQVFPLIGDKIVGDITAADLKSVLNHWMEQGYAYTTVKKVYILLNEFFRYLTEEDFIQKNPMQSVPMMKRANFLAAQDKECVPEQEAVTVFTPTEIAKFKREAFATFANGKRKYQQAAAYILMLNTGLRTGELLGLLNSDINLERRVLHLERGVKEVWRRDGLQAEPGRDVKVGKLKSATSKRTIPLNDTAIAMIQDLRKEAYFGEDTPLVPDEHGNYTRPVNFRKRYYRILAAAGIEKKGLHSLRHTFASSLVNGIRQEDGSIKSLTPRQVADLLGHSTSQITELYYVKKDTSRLHGITDGFNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL71</accession>
    <name>R6ZL71_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Nudix hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02341</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31197">
        <property type="protein sequence ID" value="CDD31197"/>
        <property type="gene ID" value="BN815_02341"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="3">
        <location>
            <begin position="5"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16002" checksum="B6D74C255D9583B9" modified="2013-07-24" version="1">MGRKFQLTGASIIIYRGNQVLLQQRNDNKCWGYHGGQVELGEIVEEAAKREVLEETGLTVHSLKLFGVYSGPDLYHVYPDGNEAYIIDIVYSSDDFSGVIKRQESEVNDLRWFSMAELPENLSPPIRRALHDFIAAQNKQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLB4</accession>
    <name>R6ZLB4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Nucleoside triphosphate pyrophosphatase</fullName>
            <ecNumber evidence="2">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="2">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + H2O = a 2'-deoxyribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:44644"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:65317"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a ribonucleoside 5'-triphosphate + H2O = a ribonucleoside 5'-phosphate + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23996"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Maf family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31242">
        <property type="protein sequence ID" value="CDD31242"/>
        <property type="gene ID" value="BN815_02386"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="192" mass="20523" checksum="97101045AD7548F9" modified="2013-07-24" version="1">MALRIDRKVVLASASPSRKMLLEQAGVDFEVVVSGVDETVPPEFTPAQTVETLAQRKGEAVLALRPEMPIIAADSVVSIDGLILGKPADDQAAKATLRRLSGRTHQLITGVCLLAAGKREVFHMSTQVTFYPLTEAEIDEYVAMGESRGRAGAYGIEGIGVVLVQSIQGDYPNIVGLPVAETLRRLGKLLEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLR4</accession>
    <name>R6ZLR4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00328</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000419">
        <property type="protein sequence ID" value="CDD31397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31397">
        <property type="protein sequence ID" value="CDD31397"/>
        <property type="gene ID" value="BN815_00328"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031967">
        <property type="entry name" value="PhoR_single_Cache-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16736">
        <property type="entry name" value="sCache_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004426823" description="Histidine kinase" evidence="7">
        <location>
            <begin position="30"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="9">
        <location>
            <begin position="220"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="340"/>
            <end position="553"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="553" mass="60580" checksum="CDE163DAD062EE96" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUG5</accession>
    <name>R6XUG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sigma-70 region 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00607</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000036">
        <property type="protein sequence ID" value="CDD27373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27373">
        <property type="protein sequence ID" value="CDD27373"/>
        <property type="gene ID" value="BN815_00607"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="1">
        <location>
            <begin position="34"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18496" checksum="1749F9B8BAEF2409" modified="2013-07-24" version="1">MKLTAEQQRKAEENMGLVGKVIADKVHGTYFGSYTREDLFQIGCIGLCKAAATDKGGCFSTYAYRLIWNEICTALISATRKASGEQPTELPILEIQGANGEFPSTLELEDLLERGERTATGVVKKGIQAMRLRVNGYSTREIGVHLGAPDNYVTAWEAKARSYLRAMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6XVC8</accession>
    <name>R6XVC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endoribonuclease YbeY</fullName>
            <ecNumber evidence="7">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ybeY</name>
        <name evidence="8" type="ORF">BN815_00042</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the endoribonuclease YbeY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27698">
        <property type="protein sequence ID" value="CDD27698"/>
        <property type="gene ID" value="BN815_00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00009">
        <property type="entry name" value="Endoribonucl_YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023091">
        <property type="entry name" value="MetalPrtase_cat_dom_sf_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002036">
        <property type="entry name" value="YbeY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020549">
        <property type="entry name" value="YbeY_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46986">
        <property type="entry name" value="PTHR46986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02130">
        <property type="entry name" value="YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00043">
        <property type="entry name" value="TIGR00043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01306">
        <property type="entry name" value="UPF0054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="7" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6 7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="168" mass="18879" checksum="98369512F5AE6825" modified="2013-07-24" version="1">MEKIRVIISNQQKAVKIPTGIRMLIRRCCHAVLQLEGFKDSAEISVSFVDNDQIQEMNRQYRNIDAPTDVLSFPMGENGNYDVNHETGAKILGDIVISVPKAMEQAKTYGHSFEREMGFLTAHSMLHLLGYDHEAGGLARVRMREKEEQVMRELGLPASASYATTPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWR4</accession>
    <name>R6XWR4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00777</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28188">
        <property type="protein sequence ID" value="CDD28188"/>
        <property type="gene ID" value="BN815_00777"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="165"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="264"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="19"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="345"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="377"/>
            <end position="384"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD28188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="588" mass="66119" checksum="91D31515DD6945C6" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYV9</accession>
    <name>R6XYV9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01009</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000110">
        <property type="protein sequence ID" value="CDD28938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28938">
        <property type="protein sequence ID" value="CDD28938"/>
        <property type="gene ID" value="BN815_01009"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16726" checksum="8115449535AC9F65" modified="2013-07-24" version="1">MEFLKTIGKAVGEAAAHLGEKNHRAAQLSRIRSFIRCQEKAAEKEYLALGRYYYHNLRDKENDVTEAHCLALDEIEQRLDAALDQLSQCYSASEAREEVTLEDVQAFDQDPAAQEETPAQAAPTPVEAAPAEEAPAATPAPAEENENLPFEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYY9</accession>
    <name>R6XYY9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ATPase involved in DNA repair</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00077</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000113">
        <property type="protein sequence ID" value="CDD28968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28968">
        <property type="protein sequence ID" value="CDD28968"/>
        <property type="gene ID" value="BN815_00077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="488"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="934" mass="106095" checksum="A05EBC723D083670" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZR4</accession>
    <name>R6XZR4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Regulatory protein RecX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">recX</name>
        <name evidence="6" type="ORF">BN815_01113</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Modulates RecA activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the RecX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000139">
        <property type="protein sequence ID" value="CDD29263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29263">
        <property type="protein sequence ID" value="CDD29263"/>
        <property type="gene ID" value="BN815_01113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006282">
        <property type="term" value="P:regulation of DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01114">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003783">
        <property type="entry name" value="Regulatory_RecX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33602">
        <property type="entry name" value="PTHR33602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02631">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="205" mass="23548" checksum="D3C3394C9BB8D1BF" modified="2013-07-24" version="1">MELTSLEPRRKGLTQLYLDGEPGPKLDTEVVLLARLQPGDVLSEEELQELVERSDARRAQEKALYLLEHRSHSKRELTEKIARTAASREAAQAAADHLEEIGLVDDRAFAETYARELFQRKRYGARRVRQELSRKGVGRDIIDQVLEQYQDMDQAAGENIALVLERRYPTWREDEKARRRAVAALQRLGYSFEQVRAVMGGLDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y015</accession>
    <name>R6Y015_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01133</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000143">
        <property type="protein sequence ID" value="CDD29358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29358">
        <property type="protein sequence ID" value="CDD29358"/>
        <property type="gene ID" value="BN815_01133"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="25973" checksum="2E22390657E72503" modified="2013-07-24" version="1">MDIGVRVEVRNEVMETVNNVLYESKLIGYPKPFKNKVRTFCQNPGGFVSQENYDNDLAVVNGHSYKDLKSQNTNLAILCSHNFAEPFHQPIEYAQKVGELTNMLGDGHILVQRYGDILDGKRTWPEELSRSNLKPTLPDAVAGDITAAMPYRAMVNILAFMQAVDHVVPGFAAVETLLYSPELKFYSNRVKMDAGLNTSVQNLHCLGDSSGWTRGLMMASAMGVLMGRKLAEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0R2</accession>
    <name>R6Y0R2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SpoVT-AbrB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01210</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29618">
        <property type="protein sequence ID" value="CDD29618"/>
        <property type="gene ID" value="BN815_01210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04014">
        <property type="entry name" value="MazE_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="6"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="79" mass="9031" checksum="4F34BBD114EEBA12" modified="2013-07-24" version="1">MDTTLQKWGNSLGIRIPKAVLDSLHWGGDDSLSLRVEGEKLILERKDKRKTIQELFDGFEGEYTPEEVDWGEPAGKDVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0S0</accession>
    <name>R6Y0S0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01215</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29628">
        <property type="protein sequence ID" value="CDD29628"/>
        <property type="gene ID" value="BN815_01215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021359">
        <property type="entry name" value="DUF2812"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11193">
        <property type="entry name" value="DUF2812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="22245" checksum="FD569CFDE39BE4DA" modified="2013-07-24" version="1">MKDRKREYRVFTIADWEREQDYLRKRHGEGWKFTGLTYPGVYHFVRCQPEDVVYQLDYNEEGIKHKDEYVRMFQDCGWEYIQDYAGYSYFRKPVSQMQGKMEEIFCDDESRLEMMRRMFLGRYTPLFIILVLLILPNLFLQLHSKEPDAPVLVVLFLILLAAYGWVFASFARQYWKLKRRSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y154</accession>
    <name>R6Y154_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AAA+ superfamily ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00647</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000048">
        <property type="protein sequence ID" value="CDD27530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27530">
        <property type="protein sequence ID" value="CDD27530"/>
        <property type="gene ID" value="BN815_00647"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041682">
        <property type="entry name" value="AAA_14"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025420">
        <property type="entry name" value="DUF4143"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13173">
        <property type="entry name" value="AAA_14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13635">
        <property type="entry name" value="DUF4143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_14" evidence="1">
        <location>
            <begin position="20"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4143" evidence="2">
        <location>
            <begin position="199"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="399" mass="46023" checksum="E8C44ACFA9CB98AE" modified="2013-07-24" version="1">MIIRPQYMNMLKTYRDVPLVKILAGIRRCGKATILDMLRDDLLKSGIAADHILSMRYTSEDFDDGMTDKAMYQGIKEQMTDDGRYYLLLDEVQEIDGWEKAVNSLLENANTDIYVTGSNSKLMSSEISTYLTGRYISIPVYTLSFAEYLDFKKSDSRSPKELLNEYLRLGGFPIVALGSFDERSAYQIVEGIYNSVITNDITKRHNIMNFDLFNRVVKYIVENVGKTFSANAIAKFLKSEGRSLSVEAVYNYLNWLEKAFVIYRCQRYDLQGKSVLKTQEKFYLADASLKYCIMGFHPTSIAAMLENIVYFELRRRGYEVYIGKNETKEIDFVAVQRDERIYVQVCRRLPEESDREVANLLEIKDHYPKYVVSLDELAAGNINGVKIVHLADFLLSNEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y160</accession>
    <name>R6Y160_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenylosuccinate lyase</fullName>
            <shortName evidence="10">ASL</shortName>
            <ecNumber evidence="4 10">4.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">Adenylosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ORF">BN815_01268</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="4 10"/>
    <dbReference type="EMBL" id="CBGU010000175">
        <property type="protein sequence ID" value="CDD29798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29798">
        <property type="protein sequence ID" value="CDD29798"/>
        <property type="gene ID" value="BN815_01268"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019468">
        <property type="entry name" value="AdenyloSucc_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10397">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00998">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADSL_C" evidence="11">
        <location>
            <begin position="374"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD29798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="481" mass="54140" checksum="32199343F38D20CD" modified="2013-07-24" version="1">MVSSMARDVYESPLSARYADKEMKYLFSPDMKFRTWRKLWIALAEAEMELGLPVTQEQVDELKAHAEDINYEVAQEREKVVRHDVMSHVYAYGQQCPGAAGIIHLGATSCYVGDNTDVIIMTEALQLIRNKLVGVIRVLSHFAQAYKDLPTLAFTHFQPAQPTTVGKRATLWIQDLLMDLEDVEYQLSKAKLLGCKGTTGTQASFLELFEGDHQKCRQLDEKIAQKMGYDKCFPVSGQTYSRKLDSQMLNLLSGIAQSAAKFSNDIRLLQHLKEVEEPFEKGQIGSSAMAYKRNPMRSERIASLARYVIADAVNPAMTMAAQWFERTLDDSANKRISVPEAFLAVDGILNLYNNVADGLVVYPKVIEQHMLRELPFMATENIMMDAVKRGGNRQELHERIRIHSMEAAKVVKEQGGENDLLARIAGDPMFGVTLEELHDIVKPEKYVGRAPAQTTEFLTEVVAPVLEKYKDVAEEKAEITV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1B6</accession>
    <name>R6Y1B6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Epoxyqueuosine reductase QueH</fullName>
            <ecNumber evidence="5 12">1.17.99.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11 12">Queuosine biosynthesis protein QueH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">queH</name>
        <name evidence="13" type="ORF">BN815_01279</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + epoxyqueuosine(34) in tRNA = A + H2O + queuosine(34) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:32159"/>
            <dbReference type="Rhea" id="RHEA-COMP:10345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:82831"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="1.17.99.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the QueH family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.99.6" evidence="5 12"/>
    <dbReference type="EMBL" id="CBGU010000180">
        <property type="protein sequence ID" value="CDD29863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29863">
        <property type="protein sequence ID" value="CDD29863"/>
        <property type="gene ID" value="BN815_01279"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052693">
        <property type="term" value="F:epoxyqueuosine reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02089">
        <property type="entry name" value="QueH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003828">
        <property type="entry name" value="QueH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36701">
        <property type="entry name" value="PTHR36701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02677">
        <property type="entry name" value="QueH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="10 12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0819">tRNA processing</keyword>
    <feature type="binding site" evidence="12">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="197"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD29863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="25020" checksum="0B72C8B62055B101" modified="2013-07-24" version="1">MPGPSRNYTKELERLIQKLQQEGKVPRLLLHACCAPCSSAVLEYLSQYFAITLLYYNPNIAPLEEYQKREAELRRLVSQMKFTHPVELLPCQYDGQAFVQAARGLEGEPEGGKRCEACFRLRLRYAAQEAARLRFDYYTTTLSISPMKNAPLLNQLGEEIGREFGVAHLPSDFKKKDGYKRSVQLSKEYDLYRQDYCGCAFSKAQRQREKEEREEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1P1</accession>
    <name>R6Y1P1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">PfkB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00708</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the carbohydrate kinase PfkB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27735">
        <property type="protein sequence ID" value="CDD27735"/>
        <property type="gene ID" value="BN815_00708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002139">
        <property type="entry name" value="Ribo/fructo_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00990">
        <property type="entry name" value="RIBOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="5">
        <location>
            <begin position="3"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="324" mass="34942" checksum="77A123E61C6C0957" modified="2013-07-24" version="1">MADMVSMGELLIDFTPVGITEDGRLLFARNPGGAPANVAVQAHRAGVSAGFLGRVGKDMFGDFLVDTLERCGVETLGLSQDPDCATTLAFVQLSPEGDRDFSFYRNPGADTRLRYEDVDLSLLEPCKLLCFGSLLLTAEPSRSTVERLVRYAKAQGKITAYDPNWRPPLWKGREEEGIQRMKSLIPLADIMKVSGEELELLTGKESLEEGAWALLEQGVSLAVVTLGARGCKAFAPGLSLEKPTYDTKVKDTTGSGDSFFGALLARIIQSGKRPEQLSPEELGDFLDFANAAGSTCATKTGAIPALPTTQEIEACRRNVPLLHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y275</accession>
    <name>R6Y275_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional repressor CopY family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BlaI transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000198">
        <property type="protein sequence ID" value="CDD30163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30163">
        <property type="protein sequence ID" value="CDD30163"/>
        <property type="gene ID" value="BN815_01408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005650">
        <property type="entry name" value="BlaI_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34134">
        <property type="entry name" value="PTHR34134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03965">
        <property type="entry name" value="Penicillinase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019455">
        <property type="entry name" value="CopR_AtkY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="125" mass="14016" checksum="DD195070E8E3AE0F" modified="2013-07-24" version="1">MISISESEWQVMQAVWSGPPKTLPEILSSLQATGWSKTTIQTYLARLVKKGALTTQRQGKGYLYYPALSQSQCQLEESKSFLHRVYGGSLSKMVLGFVESGTLSPQELEELKALVNQQEQRHDSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2B7</accession>
    <name>R6Y2B7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)</fullName>
            <ecNumber evidence="4">1.17.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ispG</name>
        <name evidence="5" type="ORF">BN815_01446</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + H2O + oxidized [flavodoxin] = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + reduced [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:43604"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:10623"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="4">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 5/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the IspG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.3" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000207">
        <property type="protein sequence ID" value="CDD30203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30203">
        <property type="protein sequence ID" value="CDD30203"/>
        <property type="gene ID" value="BN815_01446"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00159">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016425">
        <property type="entry name" value="IspG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004640">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00612">
        <property type="entry name" value="ispG_gcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 4" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="289"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="339" mass="35717" checksum="B4CF946B8F7AB359" modified="2013-07-24" version="1">MAGGVAIGGGAPITVQSMLNVPSTDIQGSVEQALRLERAGCQILRAAIPNKEAVALIPAIKERVSIPLVADIHFDYKLALEAVAAGIDKIRINPGNIGDDSRVKAVADACRRKNIPIRIGVNSGSLEKHILAKYGSPTPEALVESALYHVSLLEKFDFTDIVISLKASSVDLTVRAYELMAQQCPYPLHLGVTEAGTARMGLVKSAIGIGSLLQRGIGDTIRVSLTADPVEEVAAGEDILRALELKGGVKFVSCPTCGRTRIDLIGLAHQVEDALQGCQKDITVAVMGCAVNGPGEAREADLGVAGGEGEGLLFKKGKILRKVPEDQLLPALLEEVEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2K2</accession>
    <name>R6Y2K2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Small acid-soluble spore protein alpha/beta type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000216">
        <property type="protein sequence ID" value="CDD30288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30288">
        <property type="protein sequence ID" value="CDD30288"/>
        <property type="gene ID" value="BN815_01522"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.10.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001448">
        <property type="entry name" value="SASP_alpha/beta-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038300">
        <property type="entry name" value="SASP_sf_alpha/beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00269">
        <property type="entry name" value="SASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="6936" checksum="A01369636677D932" modified="2013-07-24" version="1">MKSNSSMVPEAKEAMNRFKMESASEVGVNLKQGYNGDLTSRQAGSIGGQMVKKMIESYEKSMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y303</accession>
    <name>R6Y303_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA/rRNA methyltransferase (SpoU)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01624</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30403">
        <property type="protein sequence ID" value="CDD30403"/>
        <property type="gene ID" value="BN815_01624"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="1">
        <location>
            <begin position="118"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="275" mass="30454" checksum="738CBF456AB6D5D2" modified="2013-07-24" version="1">MVKKINSRNAEFQKFQVLKTNRNKRHKYGEFFVEGVRNINGAVEGGWEITSFLYTREKPLSGWAEDLLQKVPTQVNYQLTAGLMEELSGKTDTSELMAVVRMRPDDLSALPLSDNPCLVLFDRASNRGNLGTILRSCDALGADGLILTGHGVDLYDPEVIVSSMGSFFRVPAVRAADNNSVFQFIESLRQRYPGFQVLGTTAHKQYPLYGQDLTGPVLLMVGNETQGLCYAFKEGCDKLVTIPMAETSYASSFNVACAATVMLYEVSRLRALNTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y395</accession>
    <name>R6Y395_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Glyceraldehyde-3-phosphate dehydrogenase</fullName>
            <ecNumber evidence="8">1.2.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01685</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.-" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000252">
        <property type="protein sequence ID" value="CDD30468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30468">
        <property type="protein sequence ID" value="CDD30468"/>
        <property type="gene ID" value="BN815_01685"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020831">
        <property type="entry name" value="GlycerAld/Erythrose_P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020830">
        <property type="entry name" value="GlycerAld_3-P_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020829">
        <property type="entry name" value="GlycerAld_3-P_DH_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020828">
        <property type="entry name" value="GlycerAld_3-P_DH_NAD(P)-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006424">
        <property type="entry name" value="Glyceraldehyde-3-P_DH_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43148">
        <property type="entry name" value="PTHR43148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02800">
        <property type="entry name" value="Gp_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00044">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000149">
        <property type="entry name" value="GAP_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00078">
        <property type="entry name" value="G3PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00846">
        <property type="entry name" value="Gp_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01534">
        <property type="entry name" value="GAPDH-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00071">
        <property type="entry name" value="GAPDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gp_dh_N" evidence="9">
        <location>
            <begin position="3"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="152"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glyceraldehyde 3-phosphate binding" evidence="4">
        <location>
            <begin position="213"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>D-glyceraldehyde 3-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="319"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Activates thiol group during catalysis" evidence="6">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000149-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000397"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU361160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="337" mass="35904" checksum="7EA51188130463F8" modified="2013-07-24" version="1">MSVKVAINGFGRIGRLAFRQMFGAEGYEVVAINDLTSPAMLAHLLKYDSAQGRYALADKVTAGEDSITVDGKTIKIYAEKDAKDLPWGEIGVDVVLECTGFYTSKAKSQAHIDAGAKKVVISAPAGNDLKTIVYSVNEKTLTAEDQIISAASCTTNCLAPMADALNKYAPIQSGIMTTVHAFTGDQMVLDGPHRKGDLRRARAAAVNIVPNSTGAAKAIGLVIPELNGKLIGSAQRVPVPTGSTTILVAVVKGKDITKEGINAAMKAASSESFGYTEEPLVSSDIIGITYGSLFDATQTMVAKIDDDTYQVQVVSWYDNENSYTSQMVRTIKYFAEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3A4</accession>
    <name>R6Y3A4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00825</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28335">
        <property type="protein sequence ID" value="CDD28335"/>
        <property type="gene ID" value="BN815_00825"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="149" mass="16442" checksum="648219753220662E" modified="2013-07-24" version="1">MRKAIFWGFLGTLAEPGAPSPNPLDPGQYRVYPDAAATLALCAYKGYQNYMLAEGFPRLTELLPKLHLERFFPGRVVSGRVELAGSHGEGLYRRAELAAHFPGMIWLVSGDSQELAGAKAAGWHTIQVHREDGEADFTCPTLTDVWRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3I4</accession>
    <name>R6Y3I4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01736</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000272">
        <property type="protein sequence ID" value="CDD30523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30523">
        <property type="protein sequence ID" value="CDD30523"/>
        <property type="gene ID" value="BN815_01736"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01046">
        <property type="entry name" value="Rubrerythrin_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024934">
        <property type="entry name" value="Rubredoxin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003251">
        <property type="entry name" value="Rubrerythrin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045236">
        <property type="entry name" value="Rubrerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02915">
        <property type="entry name" value="Rubrerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50903">
        <property type="entry name" value="RUBREDOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rubredoxin-like" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Ferritin-like diiron" evidence="3">
        <location>
            <begin position="51"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="181" mass="19929" checksum="236618BC22C20973" modified="2013-07-24" version="1">MKKFVCTVCGYVYEGEAAPEKCPVCGAPAEKFVEQAGDMTWAAEHVVGVAKGAPEEILQGLRENFQGECTEVGMYLAMARVAHREGYPEIGLYWEKAAYEEAEHAAKFAELLGEVVTDSTKKNLQMRVEAENGATQGKTDLAKKAKELNLDAIHDTVHEMARDEARHGKAFAGLLKRYFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3P2</accession>
    <name>R6Y3P2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000282">
        <property type="protein sequence ID" value="CDD30593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30593">
        <property type="protein sequence ID" value="CDD30593"/>
        <property type="gene ID" value="BN815_01804"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046088">
        <property type="entry name" value="DUF6106"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19601">
        <property type="entry name" value="DUF6106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="179" mass="20559" checksum="94BDCE192BEDC456" modified="2013-07-24" version="1">MGDVFMERMVKKKFESTDALVLLGIIVAMVVVVFIGFIVGFVLMPMPMITFLVVIGAGFGGYKLLTMRLLEYEYSLTNGYVAVDKIMNRASRKRMTAFECSSAEDIGEYQKNEARLKNQSFDARIFATEYADHRNSWYMIVRSQKTGKTLVVFDPDEEMQEAIKRFIPKTLKWEKFGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3V6</accession>
    <name>R6Y3V6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000296">
        <property type="protein sequence ID" value="CDD30663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30663">
        <property type="protein sequence ID" value="CDD30663"/>
        <property type="gene ID" value="BN815_01870"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="99" mass="10766" checksum="0EF2CA8E2C41E862" modified="2013-07-24" version="1">MRRPPSESLRPTAPPSRRNTASASRVKLYTGMALPRTGPARRSMAFSVSKVYCSGTSITVPPWPAKALSASRRRMYSVLPLPARPRTNCSMCPLLSCGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3Y2</accession>
    <name>R6Y3Y2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sporulation initiation inhibitor protein Soj</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28555">
        <property type="protein sequence ID" value="CDD28555"/>
        <property type="gene ID" value="BN815_00875"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="2"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="254" mass="27731" checksum="BF50779709C85A14" modified="2013-07-24" version="1">MGKIIAIANQKGGVGKTTTAVNLAAALGAKKKRVLLADTDPQGNTTSGVGVDRRSCEVSAYEVMIGGAKVKEALIKTEFQNLTLLPSHMDLAAAEIELAALENREAVLKNALAPIRGDYDYILIDCPPSLGLITTNALTAADTILIPIQCEYYALEGLSQLMNTVRRVKRQYNELLDIEGVLLTMYDGRLNLTQQVVEEVKKYFPRKVFKTVIPRTVRLSEAPGFGQPVLYYDKSSRGAQAYGELAAEILKNNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y402</accession>
    <name>R6Y402_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00880</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000095">
        <property type="protein sequence ID" value="CDD28575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28575">
        <property type="protein sequence ID" value="CDD28575"/>
        <property type="gene ID" value="BN815_00880"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004437031" evidence="2">
        <location>
            <begin position="26"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="36"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="187" mass="19909" checksum="DAD2CF0C56947352" modified="2013-07-24" version="1">MFKKILALAAAAALALTLAACGGTGEQLPTLVLEDPSASNTASDVSGVESGAQPTVEEVPDTEFPDTLDGLCDFLTANKAVAGEPTEMAYETIGAQDGYRFRFILNGSTVQVEVYSYDVNNLNEQGQTVLDSVKAEGSFTMLDNDVPATLNSDGKYMLLYTDGSTSAENTAQRERVLQLFEAFKVDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y427</accession>
    <name>R6Y427_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UBA/THIF-type NAD/FAD binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000097">
        <property type="protein sequence ID" value="CDD28605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28605">
        <property type="protein sequence ID" value="CDD28605"/>
        <property type="gene ID" value="BN815_00892"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43267">
        <property type="entry name" value="PTHR43267"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiF" evidence="1">
        <location>
            <begin position="10"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="25838" checksum="E8041FE3A73E47C9" modified="2013-07-24" version="1">MLHRFSREELLIGAQGLEKLQRARVAVFGIGGVGGYVVEALARSGVGALDLFDGDTVALTNINRQIIALESTVGRPKVEVARERVLQINPACQVEARQLFFTPENAGEVDFSQYDYVADAIDTVSSKIELLRLCREAGVPVISCMGAGNKLDPTAFRVAPLEKTSVCPLARVMRRELKKRGITGVKAVYSTEEALTPQAAQAGDTKGTAGRPTPGSMAFVPSVAGLILAGEIVRDLLDGTQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y429</accession>
    <name>R6Y429_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidase_S9 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01928</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30723">
        <property type="protein sequence ID" value="CDD30723"/>
        <property type="gene ID" value="BN815_01928"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001375">
        <property type="entry name" value="Peptidase_S9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00326">
        <property type="entry name" value="Peptidase_S9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S9" evidence="2">
        <location>
            <begin position="454"/>
            <end position="666"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="666" mass="75211" checksum="C1A6F2AF4D2C311E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y450</accession>
    <name>R6Y450_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01942</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30738">
        <property type="protein sequence ID" value="CDD30738"/>
        <property type="gene ID" value="BN815_01942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="326" mass="36616" checksum="15264D19B83DD812" modified="2013-07-24" version="1">MKSDMTRVLVESTIRRTLKAMQESPEREARNLVDAGAQFSTGRFQTRLISHAQRMLQNSKSAYYALVKDVVTYADHDNITTFGVNLGYNSCTKGARLIRETEREKGFNIPWALHLRVSQEKLAGDPGLYPSILREGTSLGIYTYLLFVPGEAQAVLPLVMEYPDCAFLLFLEGGQITPAFLEELAPLKNVMVSVRRGEAMEQACRALRAAGRLYAVHGSYSEEEAGYVRSGKWLESVLPARPVFAFLRADLSCTDRTQAEVYQYVTAVRDGQHYPLILMDVARDSLLIDQVISEGECLVGFDQDGSLRTHQGFRREEQGNIFHHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4B8</accession>
    <name>R6Y4B8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">tRNA pseudouridine synthase B</fullName>
            <ecNumber evidence="5">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">tRNA pseudouridine(55) synthase</fullName>
            <shortName evidence="5">Psi55 synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">tRNA pseudouridylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">tRNA-uridine isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">truB</name>
        <name evidence="9" type="ORF">BN815_00162</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30813">
        <property type="protein sequence ID" value="CDD30813"/>
        <property type="gene ID" value="BN815_00162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02573">
        <property type="entry name" value="PseudoU_synth_EcTruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01080">
        <property type="entry name" value="TruB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002501">
        <property type="entry name" value="PsdUridine_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036974">
        <property type="entry name" value="PUA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014780">
        <property type="entry name" value="tRNA_psdUridine_synth_TruB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015240">
        <property type="entry name" value="tRNA_sdUridine_synth_fam1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032819">
        <property type="entry name" value="TruB_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13767">
        <property type="entry name" value="PTHR13767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09157">
        <property type="entry name" value="TruB-C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16198">
        <property type="entry name" value="TruB_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01509">
        <property type="entry name" value="TruB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00431">
        <property type="entry name" value="TruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TruB_N" evidence="6">
        <location>
            <begin position="25"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="TruB_C_2" evidence="8">
        <location>
            <begin position="173"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="TruB-C_2" evidence="7">
        <location>
            <begin position="235"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF09157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF16198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="302" mass="32602" checksum="BCC8C18C12254DA9" modified="2013-07-24" version="1">MNGILILDKPQGFTSFDAVAVLRGLAREKKIGHTGTLDPMATGVLPVLLGRAAKALNFLPDTDKEYTAAFRLGERRDTGDITGQVVEESAAPVSQEALEAALPAFRGEILQVPPMYSAVSVGGKRLYELARKGLEVERQARPVTVSALELLSYDAQSREGRLRVACSKGTYIRVLIEDIAKAAGSCGTMTALRRVRACGFGEGDARSLEELKALAAESRLEEALLPVERLFGEYPAVWVSPAQAQRFQNGGALDLARLRRVPPEGLCRVKGPQGLFLGLGRVEPEAGQLRFVKSFLEQEGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4N3</accession>
    <name>R6Y4N3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Oligoendopeptidase F</fullName>
            <ecNumber evidence="6">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02065</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Has oligopeptidase activity and degrades a variety of small bioactive peptides.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M3B family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30903">
        <property type="protein sequence ID" value="CDD30903"/>
        <property type="gene ID" value="BN815_02065"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013647">
        <property type="entry name" value="OligopepF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042088">
        <property type="entry name" value="OligoPept_F_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004438">
        <property type="entry name" value="Peptidase_M3B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08439">
        <property type="entry name" value="Peptidase_M3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00181">
        <property type="entry name" value="pepF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M3_N" evidence="8">
        <location>
            <begin position="116"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M3" evidence="7">
        <location>
            <begin position="206"/>
            <end position="586"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU368091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF08439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="601" mass="68163" checksum="1E7085BD4BAE9B3F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y569</accession>
    <name>R6Y569_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Oxaloacetate decarboxylase gamma chain</fullName>
            <ecNumber evidence="5">7.2.4.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01019</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H(+) + 2 Na(+)(in) + oxaloacetate = CO2 + 2 Na(+)(out) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:57724"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="EC" id="7.2.4.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the OadG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.4.2" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000117">
        <property type="protein sequence ID" value="CDD29000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29000">
        <property type="protein sequence ID" value="CDD29000"/>
        <property type="gene ID" value="BN815_01019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015451">
        <property type="term" value="F:decarboxylation-driven active transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015081">
        <property type="term" value="F:sodium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036376">
        <property type="term" value="P:sodium ion export across plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005899">
        <property type="entry name" value="Na_pump_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04277">
        <property type="entry name" value="OAD_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01195">
        <property type="entry name" value="oadG_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0915">Sodium</keyword>
    <keyword evidence="5" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="101" mass="10253" checksum="15EE3793337EF4EB" modified="2013-07-24" version="1">MPEVNPAQVVIMGLVTVFIALICLIIIIVLLGKIMTAVTGNKASQTTPAQAPAPAPAAPAAVPAPAAQPGNQQLVAAIAAAIAEDMGEDVDHIKILSIRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5A7</accession>
    <name>R6Y5A7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">LexA repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00207</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31123">
        <property type="protein sequence ID" value="CDD31123"/>
        <property type="gene ID" value="BN815_00207"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16263" checksum="D2A40AA01CEEC91C" modified="2013-07-24" version="1">MKNHWGGNATEFQNTYTNRSPLGHYFLLPNAVFTLGLTPGELSIYAYLMFCEDRETHQCWPSIGKICQHTGMSANTVAKYIRQLEERQLINVEPTKVRTKSGEVRNGTLQFTIRPIQEAVNYHLERQLAGLPPRKSRKKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5A9</accession>
    <name>R6Y5A9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="9">HTPA synthase</shortName>
            <ecNumber evidence="4 9">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapA</name>
        <name evidence="11" type="ORF">BN815_02272</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 9"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31128">
        <property type="protein sequence ID" value="CDD31128"/>
        <property type="gene ID" value="BN815_02272"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00950">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020624">
        <property type="entry name" value="Schiff_base-form_aldolases_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00665">
        <property type="entry name" value="DHDPS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="207"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="48"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="296" mass="32029" checksum="93F278C6A448D5EC" modified="2013-07-24" version="1">MKHMIFTGAATALVTPFHGDGSIAWGELERLVELQIEGGIDAIVACGTTGEAATMTTEEHTQVIRFIIEKVHGRVPVIAGTGSNDTQFCVELSQEAKELGADGLLLVTPYYNKTSQKGLLESFNYVADSVKMPCILYNVPSRTGCNIQPATYKELSKNPYIVAVKEANGDISATARTAALCGDELTIYSGEDNQTLPIMALGGKGVISVFSNALPGTMHQLADAMLKGDLETARKLNSQYLDLMDGFFMDVNPIPIKEALYQMGLIQSRFCRMPLTTMTEEGKAKLTALLQKHSLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5G9</accession>
    <name>R6Y5G9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Polyamine aminopropyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Putrescine aminopropyltransferase</fullName>
            <shortName evidence="3">PAPT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Spermidine synthase</fullName>
            <shortName evidence="3">SPDS</shortName>
            <shortName evidence="3">SPDSY</shortName>
            <ecNumber evidence="3">2.5.1.16</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">speE</name>
        <name evidence="6" type="ORF">BN815_00085</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>putrescine + S-adenosyl 3-(methylsulfanyl)propylamine = H(+) + S-methyl-5'-thioadenosine + spermidine</text>
            <dbReference type="Rhea" id="RHEA:12721"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:326268"/>
            <dbReference type="EC" id="2.5.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amine and polyamine biosynthesis; spermidine biosynthesis; spermidine from putrescine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer or homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the spermidine/spermine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.16" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29115">
        <property type="protein sequence ID" value="CDD29115"/>
        <property type="gene ID" value="BN815_00085"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00248">
        <property type="reaction ID" value="UER00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004766">
        <property type="term" value="F:spermidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00198">
        <property type="entry name" value="Spermidine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030374">
        <property type="entry name" value="PABS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001045">
        <property type="entry name" value="Spermi_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035246">
        <property type="entry name" value="Spermidine_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037163">
        <property type="entry name" value="Spermidine_synt_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11558">
        <property type="entry name" value="PTHR11558"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17284">
        <property type="entry name" value="Spermine_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00417">
        <property type="entry name" value="speE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51006">
        <property type="entry name" value="PABS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword evidence="1 3 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PABS" evidence="5">
        <location>
            <begin position="2"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-methyl-5'-thioadenosine binding" evidence="3">
        <location>
            <begin position="137"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Spermidine binding" evidence="3">
        <location>
            <begin position="155"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3 4">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="33420" checksum="3331D312394A5795" modified="2013-07-24" version="1">MEFWFSEMHTPHVKLSIRVDRQLYSGKSEFQRIDVFDSPEFGRFLTLDGYMMLTEKDEFIYHEMITHVPMAVHPHVEKVLVIGAGDGGVIRELVQYQDLQHIDMVEIDPLVVEVCKKYLPKTACRLEDPRLTIHYEDGLKFIRSRQEEYDLIIVDSTDPFGPGEGLFTREFYGNCYKALKEDGILINQHESPFYPGDAAACQRAHKNIVESFPISKVYQAHIPTYPSGHWLFGFASKKYHPLKDLDETRWNMRGIPCRYYTTTLHKGAFYIPAYVEELLKHVEKEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5N3</accession>
    <name>R6Y5N3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_02397</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31253">
        <property type="protein sequence ID" value="CDD31253"/>
        <property type="gene ID" value="BN815_02397"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005543">
        <property type="entry name" value="PASTA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03793">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00740">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51178">
        <property type="entry name" value="PASTA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="331"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="9">
        <location>
            <begin position="13"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="10">
        <location>
            <begin position="362"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="10">
        <location>
            <begin position="429"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="domain" description="PASTA" evidence="10">
        <location>
            <begin position="500"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="655"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="662"/>
            <end position="683"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="693" mass="75948" checksum="3EE361C4313FBB65" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5W6</accession>
    <name>R6Y5W6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Beta-mannosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01115</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyl hydrolase 2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29290">
        <property type="protein sequence ID" value="CDD29290"/>
        <property type="gene ID" value="BN815_01115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004553">
        <property type="term" value="F:hydrolase activity, hydrolyzing O-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036156">
        <property type="entry name" value="Beta-gal/glucu_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041625">
        <property type="entry name" value="Beta-mannosidase_Ig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006102">
        <property type="entry name" value="Glyco_hydro_2_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00703">
        <property type="entry name" value="Glyco_hydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17753">
        <property type="entry name" value="Ig_mannosidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49303">
        <property type="entry name" value="SSF49303"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyco_hydro_2" evidence="4">
        <location>
            <begin position="206"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="Ig_mannosidase" evidence="5">
        <location>
            <begin position="751"/>
            <end position="817"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF17753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="819" mass="94026" checksum="6B78CE018361D36E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6G1</accession>
    <name>R6Y6G1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">30S ribosomal protein S8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rpsH</name>
        <name evidence="7" type="ORF">BN815_00379</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31503">
        <property type="protein sequence ID" value="CDD31503"/>
        <property type="gene ID" value="BN815_00379"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_B">
        <property type="entry name" value="Ribosomal_S8_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_S8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_S8_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="PTHR11758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="SSF56047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00053">
        <property type="entry name" value="RIBOSOMAL_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14314" checksum="F83FEF40BF609A32" modified="2013-07-24" version="1">MQVTDTIADLLTRIRNAQAARHDTVEVPASNMKKAICQILVDEGYVKGFNVTEDGKQGMITITLKYVGKQPVIKGLKRVSKPGLRIYSNAQELPKVMKGLGVAIISTSKGIMTDRAARKENVGGEVLAFIW</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6G9</accession>
    <name>R6Y6G9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">DNA-directed RNA polymerase subunit alpha</fullName>
            <shortName evidence="11">RNAP subunit alpha</shortName>
            <ecNumber evidence="2 11">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">RNA polymerase subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 11">Transcriptase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">rpoA</name>
        <name evidence="13" type="ORF">BN815_00394</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8 11">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="domain">
        <text evidence="11">The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 11">Belongs to the RNA polymerase alpha chain family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="2 11"/>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31518">
        <property type="protein sequence ID" value="CDD31518"/>
        <property type="gene ID" value="BN815_00394"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00059">
        <property type="entry name" value="RNApol_bact_RpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011262">
        <property type="entry name" value="DNA-dir_RNA_pol_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011263">
        <property type="entry name" value="DNA-dir_RNA_pol_RpoA/D/Rpb3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011773">
        <property type="entry name" value="DNA-dir_RpoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036603">
        <property type="entry name" value="RBP11-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011260">
        <property type="entry name" value="RNAP_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036643">
        <property type="entry name" value="RNApol_insert_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32108">
        <property type="entry name" value="PTHR32108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01000">
        <property type="entry name" value="RNA_pol_A_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03118">
        <property type="entry name" value="RNA_pol_A_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01193">
        <property type="entry name" value="RNA_pol_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00662">
        <property type="entry name" value="RPOLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55257">
        <property type="entry name" value="SSF55257"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56553">
        <property type="entry name" value="SSF56553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02027">
        <property type="entry name" value="rpoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 11 13" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="6 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0804">Transcription</keyword>
    <keyword evidence="5 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RPOLD" evidence="12">
        <location>
            <begin position="20"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha N-terminal domain (alpha-NTD)" evidence="11">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha C-terminal domain (alpha-CTD)" evidence="11">
        <location>
            <begin position="247"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00033070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="317" mass="34965" checksum="2D61F6B7C9475B87" modified="2013-07-24" version="1">MIEIERPKIEIAEISENGTYGKFVVEPLERGFGTTLGNGLRRVLLSSLPGVAVKSIKIDGVVHEFSTIPGVKEDVTEIVLNIKGLVAKLHCDGPKTVEISAEGPCEVKAESIKSDSEVEILNPELHIATLGEGARLYMELTLDKGRGYVSNERNKQNMPEGVIGEIAVDSIYTPVLKVNFNVESTRVGQSIDYDKLTLEVWTNGVINAQEAVSLAAKVLTDHLNLFVDLSDKGKSTEIMVEKDEGGKEKVLEMTIEELDLSVRSFNCLKRAGINTVEDLINRSEEDMMKVRNLGRKSLEEVIWKLASLGLSLRKDEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6W7</accession>
    <name>R6Y6W7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01208</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29615">
        <property type="protein sequence ID" value="CDD29615"/>
        <property type="gene ID" value="BN815_01208"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="623" mass="67989" checksum="70082B280E3DE4F0" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y732</accession>
    <name>R6Y732_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31773">
        <property type="protein sequence ID" value="CDD31773"/>
        <property type="gene ID" value="BN815_00471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012963">
        <property type="entry name" value="DUF1700"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08006">
        <property type="entry name" value="DUF1700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="200" mass="21468" checksum="38AB5E91C9DE0CFA" modified="2013-07-24" version="1">MTKQLFLNELAAALHSLPREERYRTLGYYDELIDDRMEDGQSEEDAVASLGEPQQVAREILGEEEPAPSTSKGRRVWLIVLLVLGFPLWGSLLLVAAIVLLCVYICLFLPAFVLGVLALGCLASALVGVVGTPVLMLDVGLLTGGLPAGLFQLGLSVALLGLAVLSALGFYFTGRATVKAAKAIWRGIRRSFSKKGRVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y747</accession>
    <name>R6Y747_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SprT-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00476</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000450">
        <property type="protein sequence ID" value="CDD31788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31788">
        <property type="protein sequence ID" value="CDD31788"/>
        <property type="gene ID" value="BN815_00476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051716">
        <property type="term" value="P:cellular response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006640">
        <property type="entry name" value="SprT-like_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10263">
        <property type="entry name" value="SprT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SprT-like" evidence="1">
        <location>
            <begin position="12"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12965" checksum="C71A7D12982094B4" modified="2013-07-24" version="1">MLQISEIVRKTEEMFDLFNEHFYEGELSRPAITVSPDGGRGAYGWCSINEIWNASGEKYREITLCAEYLDRPIFELAATLLHEMAHLYNLMYSIQNVTTKSNISVINLPGHHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7D9</accession>
    <name>R6Y7D9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RDD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01276</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29830">
        <property type="protein sequence ID" value="CDD29830"/>
        <property type="gene ID" value="BN815_01276"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021192">
        <property type="entry name" value="UCP031578_Vanz/RDD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006976">
        <property type="entry name" value="VanZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04892">
        <property type="entry name" value="VanZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031578">
        <property type="entry name" value="Uncharacterised_Vanz_RDD-cont"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="320"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="VanZ" evidence="6">
        <location>
            <begin position="48"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="7">
        <location>
            <begin position="213"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="379" mass="42841" checksum="22F0ADBF5666719F" modified="2013-07-24" version="1">MESYLRVVGQAVLVFPVAAALIALPFLIHHYRKYGGMTFARFFLSYSFVLYALCAYFLVILPLPDREAVAQMTGPSVQLLPFSFFRDLSKETGFQLAEPSTYLPALLSTFTLQFVFNIALLVPLGFYLRYYFRRKLLPAVLISLGVSLFFELTQLSGLYGYYPRAYRLFDVDDLLCNTLGGFLGYVLTGPLMKILPDRDKIDEKSYQKGERVTFTRRCLSLFVDMIFVSLLGTVLSIFLSQLPFNLPFALAYLLYFGLFQGLWGGKSLGKRLTKICVVNQDGSRVLLWRCLLRYGLLVAFIYCFFAVAEAVFLLPASSGFAQTFLRLLWFMVGFFALLVESARNSVSKIGRDYLYGRLSGTRLASTVLRQPPVPTPSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8F7</accession>
    <name>R6Y8F7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01453</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30210">
        <property type="protein sequence ID" value="CDD30210"/>
        <property type="gene ID" value="BN815_01453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="169" mass="18815" checksum="CFEB878EA1A8F6C4" modified="2013-07-24" version="1">MLGENIKAVRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTLLGETIVETDADRLTAISEKLEVINLQLAQIKCSRRKVIHWLFIAFSAAVVAMLALLLLLNSPYQHWDYSDPETAVLGTIYHSFEWLFARVWPFLLAGGVTGAVLTRKRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8G8</accession>
    <name>R6Y8G8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein conserved in bacteria</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01463</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30220">
        <property type="protein sequence ID" value="CDD30220"/>
        <property type="gene ID" value="BN815_01463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="165" mass="19485" checksum="D5CB5AD01DCEE962" modified="2013-07-24" version="1">MALLEQWQQYAEEQQNGPKGMKFWEEYLSQEAEIYKRILESKPRKNTVKGYAEKYGVDLLTMVAFLDGINDSLKEPNPLETMEEDTEVNLNYDKELLYKNMVEAKAEWLYNLPQWDKLLTEERRKELYREQKRSKTVVKGEKIGRNDPCPCGSGKKYKKCCGRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8W0</accession>
    <name>R6Y8W0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01587</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000231">
        <property type="protein sequence ID" value="CDD30360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30360">
        <property type="protein sequence ID" value="CDD30360"/>
        <property type="gene ID" value="BN815_01587"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="14365" checksum="4B2D1F87408052B8" modified="2013-07-24" version="1">MATSSQQVGNAVHFLTYLSGADNNTHLAKVCGTVPIHTTAADLEPSLEETGLAVNLLMVRRADWYYYAQEPVMYQALEGWREQAGDSLRQFLAGDLGQQELLGQFDAYWTQALEDEGELWKSPEAPEVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9V8</accession>
    <name>R6Y9V8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycerate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00742</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000076">
        <property type="protein sequence ID" value="CDD28029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28029">
        <property type="protein sequence ID" value="CDD28029"/>
        <property type="gene ID" value="BN815_00742"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008887">
        <property type="term" value="F:glycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031388">
        <property type="term" value="P:organic acid phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10350">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004381">
        <property type="entry name" value="Glycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018197">
        <property type="entry name" value="Glycerate_kinase_RE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036129">
        <property type="entry name" value="Glycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21599">
        <property type="entry name" value="PTHR21599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02595">
        <property type="entry name" value="Gly_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110738">
        <property type="entry name" value="SSF110738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="160" mass="16459" checksum="5E5879956F97DD17" modified="2013-07-24" version="1">MVARLDAGLRHLGQVAARCLGRDFSHLPGAGAAGGLGFGMAAFCGAQLRMGIDAVLDAVGFDSLLPGTDVVFTGEGKIDSQSARGKVVSGVAARCRKAGVPVVAVVGQIGQGFEEMYQQGLTAVFSINRAAQPFAESRFHAGENLALTMENIARLLAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA87</accession>
    <name>R6YA87_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aldose 1-epimerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00775</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28184">
        <property type="protein sequence ID" value="CDD28184"/>
        <property type="gene ID" value="BN815_00775"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09024">
        <property type="entry name" value="Aldose_epim_lacX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037481">
        <property type="entry name" value="LacX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="291" mass="32192" checksum="AD52F265A053CE61" modified="2013-07-24" version="1">MLYTISNGTYTAQVDSLGAQLVSLKGPDGWEYIWTGDPAYWTGHAPVLFPMVGGLRGGRAKIAGDWHQMGRHGFARHQEFALAEQGEGRLVLRLESNLATLEAYPFPCALTVAYTLTENGYETAFTVENTGDKPMPYAIGGHPGFNIPVDEQAAFEDYVIRFEKEETQRCPGIVGDKLLDYSQITLELEGEREIPLRHELFARDALIFENLNSHTVALVNPATGKGVEMEFSQFPLLGIWSAQNNGPYVCLEPWTGCGTLATEGDVFEQKKGMRTLAPSGKESYAFTIRFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAH0</accession>
    <name>R6YAH0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00798</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28269">
        <property type="protein sequence ID" value="CDD28269"/>
        <property type="gene ID" value="BN815_00798"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043751">
        <property type="term" value="F:polyphosphate:AMP phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006797">
        <property type="term" value="P:polyphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022489">
        <property type="entry name" value="PolyP_AMP_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03708">
        <property type="entry name" value="poly_P_AMP_trns"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPK2" evidence="3">
        <location>
            <begin position="14"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="PPK2" evidence="3">
        <location>
            <begin position="267"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="262"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="490" mass="57806" checksum="62636A0607505A98" modified="2013-07-24" version="1">MLKNWARPEKPEGEELKQRLKAAEEKLSQQQMKLKEKRLPVLVLIEGWGAAGKGSAIGQIIKNIDPRFFKVFSMPSTPTEEERRRPFLYRFFEKIPEAGKFTFLDSGWMDQIMKERLDGKLDDKAYAQRVDSVKRFERGLTDNGYLVLKFFFHISKKEQESRIEALLSEKDTAWRVSEGDLWQNRHYDKCLEAFDRYLDDTNTPSAPWYIVDSKSKKFAELQVMETLCMGIETALHNESLAVPLLQNAFPLIKMPKLRDVPLEGKTLDEEKYKKELKELQAKLGQLHNRLYRKRVPVIIAYEGWDAAGKGGNIKRLTGALDPRGFEVHPIASPEPHEKARHYLWRFWTRLPKDGHIAIFDRTWYGRVMVERLEGFCSENDWQRAYYEMNEFEQELHNWGAVILKFWVQIDKDTQLARFTERQNTPSKQWKITDEDWRNREKWDLYEQAVDEMLQKTSTTYAPWHILESVDKKYARIKALHIVIDALEKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN3</accession>
    <name>R6YAN3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized conserved protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30975">
        <property type="protein sequence ID" value="CDD30975"/>
        <property type="gene ID" value="BN815_02134"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005325">
        <property type="entry name" value="DUF308_memb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03729">
        <property type="entry name" value="DUF308"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="174" mass="18757" checksum="3558E64427343BCC" modified="2013-07-24" version="1">MLKSIRNSLILSSLLYIVLGVVLLVMPELSLGFACLLIGGAVLVYGVVRLAAYLRGGENADKLDLVLGVLLILLGLCLLIWIRFLLALVPMVLGIYILVDSLGSIKRSLDMKALGFSRWWISCLVAAALAVCGLVMVLNPFGTIEGLVMFVGLGFLVDGVTTLVNTILLERLQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAV3</accession>
    <name>R6YAV3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glucose-1-phosphate adenylyltransferase</fullName>
            <ecNumber evidence="9">2.7.7.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ADP-glucose pyrophosphorylase</fullName>
            <shortName evidence="9">ADPGlc PPase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">ADP-glucose synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glgC</name>
        <name evidence="12" type="ORF">BN815_02169</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>alpha-D-glucose 1-phosphate + ATP + H(+) = ADP-alpha-D-glucose + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:12120"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57498"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.27"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9 10">Glycan biosynthesis; glycogen biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.27" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31015">
        <property type="protein sequence ID" value="CDD31015"/>
        <property type="gene ID" value="BN815_02169"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00164"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008878">
        <property type="term" value="F:glucose-1-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00624">
        <property type="entry name" value="GlgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011831">
        <property type="entry name" value="ADP-Glc_PPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005836">
        <property type="entry name" value="ADP_Glu_pyroP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023049">
        <property type="entry name" value="GlgC_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43523">
        <property type="entry name" value="PTHR43523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02091">
        <property type="entry name" value="glgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00808">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00809">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00810">
        <property type="entry name" value="ADP_GLC_PYROPHOSPH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 9 10" id="KW-0320">Glycogen biosynthesis</keyword>
    <keyword evidence="2 9" id="KW-0321">Glycogen metabolism</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9 12" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="11">
        <location>
            <begin position="9"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Alpha-D-glucose 1-phosphate binding" evidence="9">
        <location>
            <begin position="181"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>alpha-D-glucose 1-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
        </ligand>
    </feature>
    <feature type="site" description="Could play a key role in the communication between the regulatory and the substrate sites" evidence="9">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="site" description="Could play a key role in the communication between the regulatory and the substrate sites" evidence="9">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="403" mass="44544" checksum="6FFBF3440FD7DE73" modified="2013-07-24" version="1">MLPKQEVVAMLLAGGQGSRLGVLTRNLAKPAVPFGGKYRIIDFPLSNCVNSGIETVGVLTQYQPLELNDYIGNGQPWDLDSNNAGVHVLPPYQKQKKTDWYKGTANAIYQNIPFIERYNPDYVVVLSGDHIYKMDYSKMLAYHKEKGAACTIAVYEVPMAEASRFGILNTNEDGSIYEFDEKPKKPKSNKASMGIYVFTWEKLRKYLEQDEEDPKSQNDFGKNVLPAMLNAGEAMYAYRFEGYWKDVGTIDSLWESNMDLLDPNVPLELNDPEWRIYSRNPVMPPHYVAKGATIQNSLAAEGCNVYGTVDFSVLFAGVYVAPGATVRDSIIMPGARIEEGATVQYAIVAEDSVVGANSVVGQRPEDVENKEDWGVAVIGPGCKLAPGTVVPPKAMIDAEEVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB20</accession>
    <name>R6YB20_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02238</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31085">
        <property type="protein sequence ID" value="CDD31085"/>
        <property type="gene ID" value="BN815_02238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="108" mass="12110" checksum="7ACF323AD1D426E1" modified="2013-07-24" version="1">MAARSDAWFRRVGTVSLTTSGGNQVQGFGAVLPWREERADLWGERPHALGRLPGPLYQFVGSFPQLLEAQGAQLTQGEERYRVLGAQEVTLGGRRLFERALLERWVEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB59</accession>
    <name>R6YB59_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">S-adenosylmethionine:tRNA ribosyltransferase-isomerase</fullName>
            <ecNumber evidence="5">2.4.99.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Queuosine biosynthesis protein QueA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">queA</name>
        <name evidence="6" type="ORF">BN815_02274</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>7-aminomethyl-7-carbaguanosine(34) in tRNA + S-adenosyl-L-methionine = adenine + epoxyqueuosine(34) in tRNA + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:32155"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="2.4.99.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the QueA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.17" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31130">
        <property type="protein sequence ID" value="CDD31130"/>
        <property type="gene ID" value="BN815_02274"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051075">
        <property type="term" value="F:S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00113">
        <property type="entry name" value="QueA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003699">
        <property type="entry name" value="QueA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042118">
        <property type="entry name" value="QueA_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042119">
        <property type="entry name" value="QueA_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036100">
        <property type="entry name" value="QueA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30307">
        <property type="entry name" value="PTHR30307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02547">
        <property type="entry name" value="Queuosine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111337">
        <property type="entry name" value="SSF111337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00113">
        <property type="entry name" value="queA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="341" mass="38225" checksum="11470117ACA5B124" modified="2013-07-24" version="1">MKTSDFNFDLPEELIAQTPIEPRDHSRLMVLDKATGAIEHRHFYDIIDYLTPADCLVLNDSRVLPARIYGVKEGTGAHVEFLLLQNKGGDVWEALAGPGKRAKKGSRFSFGDGLLHCEVVDVLPDGNRLIHFEYEGVFFHLLDQIGQMPLPPYIKARLEDKERYQTVYSREEGSAAAPTAGLHFTPELLERIQAKGVELGFVTLHVGLGTFRPVSVEDIQDHKMHSEHYYMPQATADLINKTKARGGRVIAVGTTSCRTIESVAQREGRFQESAGWTDIFLYPGCTFQGVDALITNFHLPESTLIMLVSALAGRENVLHAYNVAVQERYRFFSFGDAMFIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB81</accession>
    <name>R6YB81_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATPase_AAA_core domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28494">
        <property type="protein sequence ID" value="CDD28494"/>
        <property type="gene ID" value="BN815_00854"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATPase_AAA_core" evidence="1">
        <location>
            <begin position="173"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="344" mass="39117" checksum="E9F35E3DABDAB0F0" modified="2013-07-24" version="1">MSFKIKAAELQNYGNISAFRCSEFSNINLIIGENATGKTFLLKALYSAIRSMEDYKRGDDIRSMNEILAEKLRWTFQVEKLGDLVYRSSDDPLCFKVETDHEQNCMEYQFSQSTTTKVVNVTAPEAQKEGNSIFIPAKEVLSLFSVILKSREVDKSFGFDDTYYDLVKALRISPSRGKNYNAFSKARKRLNDVISGKVDYDEDSGKWYYKNDTNQKFAIGATAEGVKKISIMDRLLGNGYINKESILFIDELESALHPKAICDFLDMIADISHEIGIQVFISTHSYFVIKKLFLIALKYPNEVTCISLTKDNEPQICNLSDGMPKNSIIQTSVDLYRQEITEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBG4</accession>
    <name>R6YBG4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Guanylate kinase</fullName>
            <ecNumber evidence="2 9">2.7.4.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">GMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">gmk</name>
        <name evidence="11" type="ORF">BN815_02408</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Essential for recycling GMP and indirectly, cGMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + GMP = ADP + GDP</text>
            <dbReference type="Rhea" id="RHEA:20780"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the guanylate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.8" evidence="2 9"/>
    <dbReference type="EMBL" id="CBGU010000391">
        <property type="protein sequence ID" value="CDD31265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31265">
        <property type="protein sequence ID" value="CDD31265"/>
        <property type="gene ID" value="BN815_02408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004385">
        <property type="term" value="F:guanylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00328">
        <property type="entry name" value="Guanylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008145">
        <property type="entry name" value="GK/Ca_channel_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008144">
        <property type="entry name" value="Guanylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017665">
        <property type="entry name" value="Guanylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020590">
        <property type="entry name" value="Guanylate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00625">
        <property type="entry name" value="Guanylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00072">
        <property type="entry name" value="GuKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03263">
        <property type="entry name" value="guanyl_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00856">
        <property type="entry name" value="GUANYLATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50052">
        <property type="entry name" value="GUANYLATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9 11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Guanylate kinase-like" evidence="10">
        <location>
            <begin position="4"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="11"/>
            <end position="18"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="206" mass="23323" checksum="4DD31F5637D63F3F" modified="2013-07-24" version="1">MDKGLLLVISAPSGGGKGTILKELFAQDENLRLSVSATTRGPRPGEEHGKQYYFLSREEFEGLIQEGKMLEHAEYVGNYYGTPRQPVEDWMDQGHDVVLEIEVKGGAQVKQLMPECVSIFILPPSMKVLEKRLRGRGTEDEETIQKRLAKAREEIPHAKDYDYIVYNDALEDAVSDLRAIIKAEKLKFSRNTNSIERVLEDAETVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBN8</accession>
    <name>R6YBN8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6036 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000406">
        <property type="protein sequence ID" value="CDD31345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31345">
        <property type="protein sequence ID" value="CDD31345"/>
        <property type="gene ID" value="BN815_00280"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045792">
        <property type="entry name" value="DUF6036"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19502">
        <property type="entry name" value="DUF6036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6036" evidence="1">
        <location>
            <begin position="9"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="27088" checksum="B233350957C75607" modified="2013-07-24" version="1">MSSDFIFTKENLDICLRELGKEFRKLNGTAMKAELTLIGGAAILVNYWFRDSTYDVDAIIQSSSAMKDAVNRVGDKFGLPNGWLNTDFTRTSSYSPKLAAFSTYYKTFSNVLTVRTISGAYLVAMKLMAGRQYKNDISDIVGILQEQENRGQPLTMGQITQAVEDLYGGWEKLPQGSQALLEQILEDSKTGELYQVYREQERLAKESLLEFEQQYPGATKEENVENILRALKEKKEQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBQ4</accession>
    <name>R6YBQ4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">CTP synthase</fullName>
            <ecNumber evidence="9">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="9">CTP synthetase</shortName>
            <shortName evidence="9">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pyrG</name>
        <name evidence="12" type="ORF">BN815_00292</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + H2O + L-glutamine + UTP = ADP + CTP + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + NH4(+) + UTP = ADP + CTP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="9">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="9">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CTP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000413">
        <property type="protein sequence ID" value="CDD31360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31360">
        <property type="protein sequence ID" value="CDD31360"/>
        <property type="gene ID" value="BN815_00292"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="PTHR11550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="4 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 9" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CTP_synth_N" evidence="11">
        <location>
            <begin position="3"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="GATase" evidence="10">
        <location>
            <begin position="303"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="9">
        <location>
            <begin position="1"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="L-glutamine binding" evidence="9">
        <location>
            <begin position="383"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="9">
        <location>
            <position position="382"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="508"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="510"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="148"/>
            <end position="150"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="188"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="406"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="463"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF06418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD31360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="538" mass="60109" checksum="A638E7359A55162B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC97</accession>
    <name>R6YC97_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">50S ribosomal protein L24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rplX</name>
        <name evidence="6" type="ORF">BN815_00376</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="3">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 3 4">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31500">
        <property type="protein sequence ID" value="CDD31500"/>
        <property type="gene ID" value="BN815_00376"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_B">
        <property type="entry name" value="Ribosomal_L24_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="KOW_RPL26/RPL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003256">
        <property type="entry name" value="Ribosomal_L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_L24/26_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12903">
        <property type="entry name" value="PTHR12903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17136">
        <property type="entry name" value="ribosomal_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01079">
        <property type="entry name" value="rplX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KOW" evidence="5">
        <location>
            <begin position="6"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00029550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="106" mass="11511" checksum="B48EA8693A1AE15A" modified="2013-07-24" version="1">MNNKVHVKTGDTVVILSGKDRGKKGKVMQVSPKEGKVIVENANFVQKHVKPRRMGEAGGIIKAEGAIYACKVQVVCPRCGKPTRVGHKVLQDGTKERICKKCGESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCA0</accession>
    <name>R6YCA0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">RNA polymerase sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01000</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28924">
        <property type="protein sequence ID" value="CDD28924"/>
        <property type="gene ID" value="BN815_01000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030435">
        <property type="term" value="P:sporulation resulting in formation of a cellular spore"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000770">
        <property type="entry name" value="RNA_pol_sigma-SigE/K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2" id="KW-0749">Sporulation</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="7">
        <location>
            <begin position="199"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="26565" checksum="54A54FB300C94048" modified="2013-07-24" version="1">MPALFSQLFQLLSQALYLLLHVTGGGTFPRALSAAQERQCLEEMAQGSQAARQKLIEHNLRLVAHIIKKYYASQNDQEDLISIGTIGLIKAIDTFDPAKGIRLSSYASRCIENEILMFFRSGRKSAQDVSLNEPIDTDKEGNALTILDTMAVDDTIVESIDTKMKSEKLYRFLQSSLTPREREVVCRRYGLLGFAPQPQRVVAKRLGISRSYISRIEKKALEKLRRQFQQERLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCK2</accession>
    <name>R6YCK2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00424</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000436">
        <property type="protein sequence ID" value="CDD31615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31615">
        <property type="protein sequence ID" value="CDD31615"/>
        <property type="gene ID" value="BN815_00424"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046108">
        <property type="entry name" value="DUF6045"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19511">
        <property type="entry name" value="DUF6045"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="275" mass="29900" checksum="8D69A03F8FD25370" modified="2013-07-24" version="1">MKWLFNAFYDSIADVFSQMGDMGAEIFDLSWIESAVHLFFLFGWVLFGVGVIVAAFDLAVEYQNGRATIKSTMLNILKGFFAANLVTVVPVNLYTFCISLQNIFLKDLAADYVGAQSFNLGEVALKVLAAKFGPPTVGPALGLLNLLTLVALAYCVLKVFFANIKRGGILLIQMAVGSLYLFSVPRGYTDGFSQWCKQIFALCLTAFLQTVLLFLGLLTFQDNLLLGLGIMLAAGEVPRIAQQFGLDSSVKVNMMSVVHATSTAVNMTKNIAKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YE78</accession>
    <name>R6YE78_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000164">
        <property type="protein sequence ID" value="CDD29574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29574">
        <property type="protein sequence ID" value="CDD29574"/>
        <property type="gene ID" value="BN815_01195"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="1">
        <location>
            <begin position="16"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="142" mass="15777" checksum="B6AA74044E3BE22D" modified="2013-07-24" version="1">MEAECSFGIRNPDKVLVDATLEELGLAQYRERHPNTLSGGQKQRVAVAVSMICGKDLLVFDEPTSGLDFDSMAQVAGLIRRLSDMGKVIFIVTHDFEFVCRTCSRVLHFDEGEMPDDVPVAMEALPKLRELFSVSVSNGKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG83</accession>
    <name>R6YG83_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00128</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000235">
        <property type="protein sequence ID" value="CDD30369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30369">
        <property type="protein sequence ID" value="CDD30369"/>
        <property type="gene ID" value="BN815_00128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023811">
        <property type="entry name" value="CHP04076"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04076">
        <property type="entry name" value="TIGR04076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14727" checksum="F8F7C1E1F9575863" modified="2013-07-24" version="1">MKHMVKVTVLAKKCYPELQEAYCMNPKAGPCSCYNVGDEFLFRRDGDKDDFWHLGLGTLVQTTADPNTVAGGPAMPFCSEAWDAISRYIYAGLQGGSIMRDWMNEENTMITCCNDGTRPVIFKLERIDVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGA6</accession>
    <name>R6YGA6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30394">
        <property type="protein sequence ID" value="CDD30394"/>
        <property type="gene ID" value="BN815_01615"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="136"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="227" mass="24633" checksum="8CEF2B3DEC70872D" modified="2013-07-24" version="1">MWSNAPLVLLSVRLGERFRLRLPLGLWAVSGLLLSLDGLLALVPGTWGGRLRPLSDGTYAFLRELQAQPPQELVNVRLRDKEGPVQVSARTWGPLPAKKEGARPRRGMPWALCLPWELAACWLSLLLVGLLLEQSLGGLLGGGALLFLWRLLPRPVLLALLLPVNLPLAGLFTPVVDGLLVAWACAWTGVSLGLWGCLAAALALGIARLPLARWKWARGMPPALLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGE4</accession>
    <name>R6YGE4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="3">3-dehydroquinase</shortName>
            <ecNumber evidence="3">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Type I DHQase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Type I dehydroquinase</fullName>
            <shortName evidence="3">DHQ1</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">aroD</name>
        <name evidence="4" type="ORF">BN815_00677</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the type-I 3-dehydroquinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27626">
        <property type="protein sequence ID" value="CDD27626"/>
        <property type="gene ID" value="BN815_00677"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046279">
        <property type="term" value="P:3,4-dihydroxybenzoate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00502">
        <property type="entry name" value="DHQase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00214">
        <property type="entry name" value="AroD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001381">
        <property type="entry name" value="DHquinase_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01487">
        <property type="entry name" value="DHquinase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01093">
        <property type="entry name" value="aroD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 3" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0704">Schiff base</keyword>
    <feature type="region of interest" description="3-dehydroquinate binding" evidence="3">
        <location>
            <begin position="46"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="3">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="77"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>3-dehydroquinate</name>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00214"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="26972" checksum="7F0C48475AECFF16" modified="2013-07-24" version="1">MRCIPLQGLRFGEGLPKLCVPLTGNGMPALLSELQQVADLPADLFEWRLDCFFGNPLPVLPQVLENLGDKPLLCTLRTQGEGGQARLSPEEYERRLVDLLQTGGFGFVDIELSCGEERAARLAELAKSRGISVVLSKHDFHQTPPKEEIAATLRRMKALGADLPKYAVMPRTPGDVLALLAATWEASSEIGPVITMSMGELGKITRAGGGVFGSCLTFGAGLNASAPGQIDAENLRAILEDLQPYDSGARGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGH4</accession>
    <name>R6YGH4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000252">
        <property type="protein sequence ID" value="CDD30469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30469">
        <property type="protein sequence ID" value="CDD30469"/>
        <property type="gene ID" value="BN815_01686"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="248"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="295" mass="32193" checksum="79ABD77B272D3DCF" modified="2013-07-24" version="1">MKLVNVGNALKVTCVGFAAGVLLRVVQMLYFFDYDTDFYTDGGVMAWISLALPLATGLLASWMCFRSRRYFGPYVPRKNVMAGVAAVLSGAVLLLSGALQWMDLRLQLAAGGEYVALHGLFLGCCLLFGLVQLFLSVGFFTGKNSLEKARLLYLVGVLWGVAYLILVYVFYAKSSSFVENFFAVLGGVATLLCLFYLCKLFAGVDEEGAAKRAFVAGIFAVVLGLTYSLSNLALLLLGRTYTGEMPPAVQLASMVVQLFLLAFLVSFRKYSLRRTPKGGTEHPVARHSAKRFKVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH81</accession>
    <name>R6YH81_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Glycosyl hydrolase family 43</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01939</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30734">
        <property type="protein sequence ID" value="CDD30734"/>
        <property type="gene ID" value="BN815_01939"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="47" mass="5052" checksum="980F09973D3A6A1E" modified="2013-07-24" version="1">MGTGCTQLLSTEVTICTFTGCFYGMFAEGASQGTFQEFTFTPLPEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHD3</accession>
    <name>R6YHD3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01998</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000321">
        <property type="protein sequence ID" value="CDD30794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30794">
        <property type="protein sequence ID" value="CDD30794"/>
        <property type="gene ID" value="BN815_01998"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036192">
        <property type="entry name" value="Cell_div_ZapA-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102829">
        <property type="entry name" value="SSF102829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="261"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="293" mass="33443" checksum="01C1A1DEFB0C2B09" modified="2013-07-24" version="1">MEKRRVRLEINGVICGLITQESDEYMKSLADEVSEMLEEIQIASPYITREAAALTVALNYCDDARKNGQKRKQLQERVDELEVEAEVWHEERADMVQNGPNPETRARMENLERRNNALQEIAGQVDELRRRVVSLEKENRALEEQSQKASQLEPMRQELEQLREENQRLRQGVATPENESLLEELEKLAADNAALKLAAEEKDAQLQKAEQEKQSTVAAAKRAVEEAKRLVDQARAQAPTGAAGPEQSELVEPALPEEDEAGDDPQAHHRRKNPLRHDEEFEQDGFVSFFEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIH1</accession>
    <name>R6YIH1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02343</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the flavin oxidoreductase frp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31199">
        <property type="protein sequence ID" value="CDD31199"/>
        <property type="gene ID" value="BN815_02343"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016446">
        <property type="entry name" value="Flavin_OxRdtase_Frp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43425">
        <property type="entry name" value="PTHR43425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005426">
        <property type="entry name" value="Frp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="3" id="KW-0521">NADP</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nitroreductase" evidence="4">
        <location>
            <begin position="9"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR005426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="236" mass="26961" checksum="469AB134897E0ADA" modified="2013-07-24" version="1">MNETLRVLMERKSVRVFEKRPIGPEEKQAILNAAMRAPTAGNSMLYSILDVTDQALKDNLAITCDHQPFIAAAPMVLVFLADYRRWVRKFQQAGCEDVPAPRLSDFILAANDTVIAAHAACVAAESLGIGSCYIGDIIEQWEEHREMFGLPPYVAPVSMLVFGYPTQQQKDRPQTSRFPQKMIVMENGYHDLTEEELQEYYPDDKAQAFYKRKYVSDFAWEMDRSALEILKNWEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIR0</accession>
    <name>R6YIR0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00237</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31299">
        <property type="protein sequence ID" value="CDD31299"/>
        <property type="gene ID" value="BN815_00237"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="15175" checksum="A69A94ADCF44C7BB" modified="2013-07-24" version="1">MGGKKHEAGKLKTWGTFPGRDVKKRYFTLPNEIFTLGLDQGEIAVYAYLLFCEDRETYQCWPSFKRIGQCTGMSPNTVRKYVHRLEEKRLIDTEKTTVQGRDGKVKNGVLLYTIRPIHEAVAYRMEQDRVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YLS3</accession>
    <name>R6YLS3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetate kinase</fullName>
            <ecNumber evidence="6">2.7.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Acetokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ackA</name>
        <name evidence="8" type="ORF">BN815_01173</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>acetate + ATP = acetyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:11352"/>
            <dbReference type="ChEBI" id="CHEBI:22191"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Mg(2+). Can also accept Mn(2+).</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the acetokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.1" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000154">
        <property type="protein sequence ID" value="CDD29496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29496">
        <property type="protein sequence ID" value="CDD29496"/>
        <property type="gene ID" value="BN815_01173"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00340">
        <property type="reaction ID" value="UER00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008776">
        <property type="term" value="F:acetate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006082">
        <property type="term" value="P:organic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00020">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004372">
        <property type="entry name" value="Ac/propionate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000890">
        <property type="entry name" value="Aliphatic_acid_kin_short-chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023865">
        <property type="entry name" value="Aliphatic_acid_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21060">
        <property type="entry name" value="PTHR21060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00871">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00471">
        <property type="entry name" value="ACETATEKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01076">
        <property type="entry name" value="ACETATE_KINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="5"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="80"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="128"/>
            <end position="132"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="21212" checksum="A1E8527C6607522A" modified="2013-07-24" version="1">MITCHLGNGSSITAIDGGKVIDTSMGLTPLDGFMMGSRTGTLDPSVVTFIMEKEHLTPSEMDQVLNKKSGLLGISGVSSDDRDVTKAAAEGNQRAQLAHDILEYQISKFIGGYLVALGGCDAIVFTAGVGENQSHHRQVVGEYLKFLGVKIDPELNEKMVLGKEGKISTPDSSMEVYVIPTNEELVIARDTKALVEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMR0</accession>
    <name>R6YMR0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FeoA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01288</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29891">
        <property type="protein sequence ID" value="CDD29891"/>
        <property type="gene ID" value="BN815_01288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007167">
        <property type="entry name" value="Fe-transptr_FeoA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038157">
        <property type="entry name" value="FeoA_core_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008988">
        <property type="entry name" value="Transcriptional_repressor_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04023">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00899">
        <property type="entry name" value="FeoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50037">
        <property type="entry name" value="SSF50037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeoA" evidence="2">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9139" checksum="BB44BDBE320F9BEA" modified="2013-07-24" version="1">MTLQEGNGGSRYKVRKLDLPVELERRLEALGLIEGTTVTVLRKKRRGAMIIKVRGTRFAVGWGISTHITVEPQERRENHGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMT4</accession>
    <name>R6YMT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01297</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GtrA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29911">
        <property type="protein sequence ID" value="CDD29911"/>
        <property type="gene ID" value="BN815_01297"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007267">
        <property type="entry name" value="GtrA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04138">
        <property type="entry name" value="GtrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="81"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="GtrA" evidence="7">
        <location>
            <begin position="17"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="141" mass="16171" checksum="2C108520CE3C9E7D" modified="2013-07-24" version="1">MEKCKELFRKYKELILYVFFGGLTTVVNWVGYWLLADLLHVPYLWATAIAQIAAILFAYVTNRIWVFHSKAKGLGPVLGEMVRFFGCRGVSFVLDLLCMRIGVGALGINDMVMKFLSNVIVVIVNYIFSKLIVFRKPKQER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP00</accession>
    <name>R6YP00_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01575</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000222">
        <property type="protein sequence ID" value="CDD30341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30341">
        <property type="protein sequence ID" value="CDD30341"/>
        <property type="gene ID" value="BN815_01575"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="14930" checksum="BF86E8EE2DFDDAE2" modified="2013-07-24" version="1">MRLKSNRWHRDRIVGSSLCTSVVAKMKITWGGGSSKVFSSALKAATESMCTSSMMYTRYLAVAGVKLDSSMRERMESTPLLLAASISTTSKIEPSSSPRQISHSPQGSPSLGCRQFTARARILAQVVLPVPREPVNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YP19</accession>
    <name>R6YP19_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000226">
        <property type="protein sequence ID" value="CDD30356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30356">
        <property type="protein sequence ID" value="CDD30356"/>
        <property type="gene ID" value="BN815_01583"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425716" evidence="1">
        <location>
            <begin position="38"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="75" mass="8289" checksum="45B5F487BAE63DD8" modified="2013-07-24" version="1">MSRMVSSPSWMQSATARLFRMFFVPKASWIFLEPAVSATATGTTHSTARAMRQSQANIHTPITNVEPMDANSWGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPM4</accession>
    <name>R6YPM4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01717</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000266">
        <property type="protein sequence ID" value="CDD30501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30501">
        <property type="protein sequence ID" value="CDD30501"/>
        <property type="gene ID" value="BN815_01717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="53" mass="5879" checksum="296BE0E2C9A13792" modified="2013-07-24" version="1">MMTNEARVAAVMERVRARVQLRKQRRMAGVLVLAPLAAGFALGGLAYHRKEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPR7</accession>
    <name>R6YPR7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_01769</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30556">
        <property type="protein sequence ID" value="CDD30556"/>
        <property type="gene ID" value="BN815_01769"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="312"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="386"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="410"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="493"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="530"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="311"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="587"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="160"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="170"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="621"/>
            <end position="628"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="830" mass="89958" checksum="685D80EF65046243" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPV6</accession>
    <name>R6YPV6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isopentenyldiphosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01817</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30606">
        <property type="protein sequence ID" value="CDD30606"/>
        <property type="gene ID" value="BN815_01817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="28"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="20184" checksum="C671AAC187612479" modified="2013-07-24" version="1">MELWDLYDKDRRPLGRTHQRGLPVPPGAYHLAVIVVILNPKGEVLLTRRAPEKDACPGWWENTGGSVLTGETSLEAITRELREETGLAARPEEFTLLLREDCRTDAHFDIYALTWEGAPEDIRFQAGETDAARWMPLKDWEAVAGTEGTLCPARKEAYKQELYRRIALYLQGQREFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ77</accession>
    <name>R6YQ77_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01955</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30751">
        <property type="protein sequence ID" value="CDD30751"/>
        <property type="gene ID" value="BN815_01955"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="237"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="272"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="17"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="330"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="363"/>
            <end position="370"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="581" mass="63951" checksum="27251273E697D4A3" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQC7</accession>
    <name>R6YQC7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase U32 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000322">
        <property type="protein sequence ID" value="CDD30796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30796">
        <property type="protein sequence ID" value="CDD30796"/>
        <property type="gene ID" value="BN815_02000"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071704">
        <property type="term" value="P:organic substance metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020988">
        <property type="entry name" value="Pept_U32_collagenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001539">
        <property type="entry name" value="Peptidase_U32"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12392">
        <property type="entry name" value="DUF3656"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01136">
        <property type="entry name" value="Peptidase_U32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3656" evidence="1">
        <location>
            <begin position="58"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="47201" checksum="81BC83D34B1D24B6" modified="2013-07-24" version="1">MPQALLDQLEAVFSRSGFTQGYLTGERGRAMFGVRRKEDVTQATEKVFASLRGLYRGENQRVSVFLDLKVQGEALLLTARDGEGRRAVSTAPLGEGLSLLPQERCVQQLQKTGGTPFRAESVQVPQAGVPCGVSTLNALRREALDTLLRLREEREPIPFQRMPLSFSAHSSRQGELPLRAQFRLVSQVCPQAKRCREIVLPLETPLAQLERLREQGYPSVFLDIPRALFGEENRTVRKMQQCVQAGFDKFLCGNLGAVALARQLGAGVHGSFGLNIYNTASLEFFRTLGLSTAELSLELTAREVSQLGDSLPRGLMVYGRQPMMLVRNCPLANSPKGCLRCKEPGCLTDRKRKEFPVVCRGGKNIEVLNSVPLWLCDLGKELAPVDFGVARFTVENSVECGDILDACFQGNPPGFDYTRGLFHRGVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQJ1</accession>
    <name>R6YQJ1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30846">
        <property type="protein sequence ID" value="CDD30846"/>
        <property type="gene ID" value="BN815_02033"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="886" mass="96148" checksum="D4E57F27E343E1F6" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQJ6</accession>
    <name>R6YQJ6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isopentenyldiphosphate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02038</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30851">
        <property type="protein sequence ID" value="CDD30851"/>
        <property type="gene ID" value="BN815_02038"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="28"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="180" mass="19766" checksum="58500E9EEF75F60B" modified="2013-07-24" version="1">MELVDIYDAQGRPTGKVQDREAPLAAGEYLLAVGVWIVDGEGNILLTQRSPEKRWAPGKWENTAGHAQAGEDCPAAMAREIREEIGLEIAPEQLVPLGGSPATGHYIGENYGLRLRQRPERLTFQPGETCAAKWVTPEELERMAQSGELSPSVLSHLEGSYREAFLQFIGRQGSTLLRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQT8</accession>
    <name>R6YQT8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02093</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30931">
        <property type="protein sequence ID" value="CDD30931"/>
        <property type="gene ID" value="BN815_02093"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="204"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="303" mass="34575" checksum="BA39BF8A7307D5B3" modified="2013-07-24" version="1">MNWEPSMDPYELRESIGENLEETCQHGDKAFPCAGYRDHYRRGREGYPWHWHDEWEIAFVEQGQVRAQVNGEQHLLGPGEGIFINRRVLHAFSLEGDGEVWMPNLLFLPSLLYGSQESVFWEKYTKPLAFSTGCTHLALRQDVPWQREALAQAGRAYALLEEAAYGYELRVRSALSEVLVALAGHLPELPSQPSRNQAEIRRVRQMLTFIQGHCTQPLRVEDIAASVFISRRECMRAFQNVLGISPIQYVLQLRVRKAKELLLETGLSLGEICAACGFQGQSYFTKAFRERTGTTPGKFREGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQY0</accession>
    <name>R6YQY0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Magnesium-transporting ATPase, P-type 1</fullName>
            <ecNumber evidence="5">7.2.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Mg(2+) transport ATPase, P-type 1</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BN815_02125</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Mediates magnesium influx to the cytosol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + Mg(2+)(out) = ADP + H(+) + Mg(2+)(in) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10260"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.2.2.14"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.14" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30966">
        <property type="protein sequence ID" value="CDD30966"/>
        <property type="gene ID" value="BN815_02125"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015444">
        <property type="term" value="F:P-type magnesium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02077">
        <property type="entry name" value="P-type_ATPase_Mg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006068">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006415">
        <property type="entry name" value="P-type_ATPase_IIIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00689">
        <property type="entry name" value="Cation_ATPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00690">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01836">
        <property type="entry name" value="MGATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00831">
        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01524">
        <property type="entry name" value="ATPase-IIIB_Mg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-1278">Translocase</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="112"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="274"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="304"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="754"/>
            <end position="777"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="797"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="834"/>
            <end position="857"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="869"/>
            <end position="892"/>
        </location>
    </feature>
    <feature type="domain" description="Cation_ATPase_N" evidence="15">
        <location>
            <begin position="28"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD30966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="900" mass="98254" checksum="F4E5B605F34C849B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQZ3</accession>
    <name>R6YQZ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000353">
        <property type="protein sequence ID" value="CDD30976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30976">
        <property type="protein sequence ID" value="CDD30976"/>
        <property type="gene ID" value="BN815_02135"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="129" mass="14336" checksum="BFB2FC1E1F5AFEFB" modified="2013-07-24" version="1">MKFYIGSGLQNAPQVRQLAQLLKAAGWEHTYDWTASLHTPLSLDTLRTLGEREFQGVKDADVVILLSPRGKGTHTEFGMALAWGKKVHLCHGDDSLFRGDENTSTFYCLPQVHRLVGDTEAIARQVLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSQ3</accession>
    <name>R6YSQ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00413</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000431">
        <property type="protein sequence ID" value="CDD31591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31591">
        <property type="protein sequence ID" value="CDD31591"/>
        <property type="gene ID" value="BN815_00413"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047661">
        <property type="term" value="F:amino-acid racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033134">
        <property type="entry name" value="Asp/Glu_racemase_AS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004380">
        <property type="entry name" value="Asp_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF7">
        <property type="entry name" value="PTHR21198:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00035">
        <property type="entry name" value="asp_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00924">
        <property type="entry name" value="ASP_GLU_RACEMASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="238" mass="25706" checksum="BC49ACEF27202B0D" modified="2013-07-24" version="1">MKTLGIIGGMGPMATAYLLELIIQMTAAKTDQEHLSAVVLNNPQVPDRTAYILDRAKPSPLPVLEGMAHALENLGCGVLCAPCVTSHYFYEELAGCVQVPFLHMVRETAKELQAAGKTRAGILATTGTVKMGLFQQALEEAGVEWAIPSEAGQRLVMSLIYEDIKAGRPANMGKFQRASEQLFDQGCDCVILGCTELSLVKRDIPLGHGYLDALEVLSKRCVEACGAPLKEAYRQLIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZA99</accession>
    <name>R6ZA99_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Toxin-antitoxin system antitoxin component PHD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00614</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000037">
        <property type="protein sequence ID" value="CDD27392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27392">
        <property type="protein sequence ID" value="CDD27392"/>
        <property type="gene ID" value="BN815_00614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="91" mass="10067" checksum="873C6FD3A20E7DC6" modified="2013-07-24" version="1">MNFYSVRDLRTTQKAIWEKLEQDGEVVITNNGKPSALLFDIGDGDLEETLKAVRQAKAMMAFNSMRGKAAAKGYLSEEELGAEIAAARQEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZCU5</accession>
    <name>R6ZCU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LysR substrate-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00818</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28322">
        <property type="protein sequence ID" value="CDD28322"/>
        <property type="gene ID" value="BN815_00818"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysR_substrate" evidence="1">
        <location>
            <begin position="2"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="162" mass="18048" checksum="932B9EDF9E53B132" modified="2013-07-24" version="1">MPLGHPLAARQSVTFQDLDGFSLLAHRNALAWMELCRRKLPHSNLLAQDSLESLHQLIDSSTLPAFGSVRALERERPRGNRVAIPLQDAEARATYYLACLQGEQKRYSGLFRRVRGGIWVSPVAGALVPNAGSVAVILNSAFLLQRRRKLPLEEERQPTLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDE3</accession>
    <name>R6ZDE3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28502">
        <property type="protein sequence ID" value="CDD28502"/>
        <property type="gene ID" value="BN815_00857"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="51" mass="6102" checksum="927091AF1BBFDDE3" modified="2013-07-24" version="1">MAVETIEVFLLEHDMEVTLVTFDQETWYLAKEKFGELMDTIHIGKETYYDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZG29</accession>
    <name>R6ZG29_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01148</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000147">
        <property type="protein sequence ID" value="CDD29417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29417">
        <property type="protein sequence ID" value="CDD29417"/>
        <property type="gene ID" value="BN815_01148"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="215" mass="24902" checksum="F1DAF704D158C608" modified="2013-07-24" version="1">MARNKYPEVTEERILEAAQRLFLEKGYDNTTIQDIVDQLGGLTKGAVYHHFKSKEEILDKVGDRMFFQNNPFEAVKQRGDLNGLEKLREAVRLNQADASRTNLTLQSLPLHKNPRLLVEMIDSNRRVLTPYFLELLEEGNRDGSLHTEYPREIAELLPVLTSLWLMPSLFPATKEEMKRKFTFLGEMLEHMGVPLFDESIQAVVDQFFDQMPDFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHC6</accession>
    <name>R6ZHC6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Predicted TIM-barrel fold metal-dependent hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01278</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000180">
        <property type="protein sequence ID" value="CDD29862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29862">
        <property type="protein sequence ID" value="CDD29862"/>
        <property type="gene ID" value="BN815_01278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032465">
        <property type="entry name" value="ACMSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21240">
        <property type="entry name" value="PTHR21240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="69"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="272" mass="31201" checksum="C9C1F51BFBB1FD99" modified="2013-07-24" version="1">MSVFHNGVTYRAADAHAHIYPGKIAEKATGSVGEFYHIPMQNVGLPHILAQRGAEAGIDRFLVCSVATKVEQVRSINQFIQEKCQKYPQFIGLAAWHQDVADIQGEMDDIQRRGLRGIKLHPDFQRFYIDDERMLPVYEEAHRRGLPILFHTGDSRTDFSTPRRLMNVLEKIPDFTCIAAHLGGYSEWEDARRELSGTNVYIDTSSSLFAVTPEQARKSIDHFGIEHTLFGTDFPMWSPKEELERFFALGYGQEDNRKMLYGNFARLFRLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHJ3</accession>
    <name>R6ZHJ3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="13">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ORF">BN815_01312</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29932">
        <property type="protein sequence ID" value="CDD29932"/>
        <property type="gene ID" value="BN815_01312"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001949">
        <property type="entry name" value="NADH-UbQ_OxRdtase_51kDa_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011538">
        <property type="entry name" value="Nuo51_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037225">
        <property type="entry name" value="Nuo51_FMN-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019575">
        <property type="entry name" value="Nuop51_4Fe4S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037207">
        <property type="entry name" value="Nuop51_4Fe4S-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019554">
        <property type="entry name" value="Soluble_ligand-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01512">
        <property type="entry name" value="Complex1_51K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10589">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10531">
        <property type="entry name" value="SLBB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00928">
        <property type="entry name" value="NADH_4Fe-4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140490">
        <property type="entry name" value="SSF140490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142019">
        <property type="entry name" value="SSF142019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00645">
        <property type="entry name" value="COMPLEX1_51K_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-0288">FMN</keyword>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="12">
        <location>
            <begin position="539"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="12">
        <location>
            <begin position="569"/>
            <end position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD29932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="596" mass="64324" checksum="A5226023D05F6F1A" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIA0</accession>
    <name>R6ZIA0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000201">
        <property type="protein sequence ID" value="CDD30177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30177">
        <property type="protein sequence ID" value="CDD30177"/>
        <property type="gene ID" value="BN815_00110"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="81" mass="9026" checksum="7F4D6257C2AFD910" modified="2013-07-24" version="1">MESRRFLARLLPELEKQPPGAYAVRVCPRQLSVATGQKRCNLEALARRGYAVRFAPDAFLAPGRFGVGPQETRNEKGKQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIY1</accession>
    <name>R6ZIY1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">HPr kinase/phosphorylase</fullName>
            <shortName evidence="10">HPrK/P</shortName>
            <ecNumber evidence="10">2.7.11.-</ecNumber>
            <ecNumber evidence="10">2.7.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">HPr(Ser) kinase/phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">hprK</name>
        <name evidence="13" type="ORF">BN815_01638</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). The two antagonistic activities of HprK/P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK/P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport: it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>[HPr protein]-L-serine + ATP = [HPr protein]-O-phospho-L-serine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46600"/>
            <dbReference type="Rhea" id="RHEA-COMP:11602"/>
            <dbReference type="Rhea" id="RHEA-COMP:11603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>[HPr protein]-O-phospho-L-serine + H(+) + phosphate = [HPr protein]-L-serine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:46604"/>
            <dbReference type="Rhea" id="RHEA-COMP:11602"/>
            <dbReference type="Rhea" id="RHEA-COMP:11603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homohexamer.</text>
    </comment>
    <comment type="domain">
        <text evidence="10">The Walker A ATP-binding motif also binds Pi and PPi.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="10">Both phosphorylation and phosphorolysis are carried out by the same active site and suggest a common mechanism for both reactions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the HPrK/P family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.-" evidence="10"/>
    <dbReference type="EC" id="2.7.4.-" evidence="10"/>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30417">
        <property type="protein sequence ID" value="CDD30417"/>
        <property type="gene ID" value="BN815_01638"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004712">
        <property type="term" value="F:protein serine/threonine/tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006109">
        <property type="term" value="P:regulation of carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01918">
        <property type="entry name" value="HprK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01249">
        <property type="entry name" value="HPr_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003755">
        <property type="entry name" value="HPr(Ser)_kin/Pase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011104">
        <property type="entry name" value="Hpr_kin/Pase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011126">
        <property type="entry name" value="Hpr_kin/Pase_Hpr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028979">
        <property type="entry name" value="Ser_kin/Pase_Hpr-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30305:SF1">
        <property type="entry name" value="PTHR30305:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07475">
        <property type="entry name" value="Hpr_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02603">
        <property type="entry name" value="Hpr_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75138">
        <property type="entry name" value="SSF75138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00679">
        <property type="entry name" value="hpr-ser"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 10 13" id="KW-0418">Kinase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Hpr_kinase_N" evidence="11">
        <location>
            <begin position="8"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="Hpr_kinase_C" evidence="12">
        <location>
            <begin position="134"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Important for the catalytic mechanism of both phosphorylation and dephosphorylation" evidence="10">
        <location>
            <begin position="205"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Important for the catalytic mechanism of dephosphorylation" evidence="10">
        <location>
            <begin position="268"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for phosphorylation activity. Proton donor; for dephosphorylation activity" evidence="10">
        <location>
            <position position="181"/>
        </location>
    </feature>
    <feature type="active site" evidence="10">
        <location>
            <position position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="157"/>
            <end position="164"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001319"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="321" mass="35768" checksum="0AEEE8E0732BF715" modified="2013-07-24" version="1">MTEEYTIPLSRIIKELSLREVHMPKTAEEILIVSRDVIRPGLELYGFCDYFDPKRITVLGRSEMAMLESLGEKKKAEAIDHFFALRPATVIVARDIDPCGYMTAAAERYDIPLLSSRDSTSNVVADLVSLLNVELAPRITRHGVLIEVYGEGILLVGDSGVGKSETAIELIKRGHRLIADDAVEIRRVSSKSLVGRAPENIRHFIELRGVGIINARRIFGMGAIKMSEKIDMCINMEIWDATKLYDRMGIDSEYTEILGIRVPVMTIPVKPGRNLAVIIEVAAMNNRQKKMGYNAAQELLSSLGVDLSELQGEDIKKDLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ52</accession>
    <name>R6ZJ52_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01708</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000263">
        <property type="protein sequence ID" value="CDD30492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30492">
        <property type="protein sequence ID" value="CDD30492"/>
        <property type="gene ID" value="BN815_01708"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="197"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="197"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="227"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="241" mass="24648" checksum="5D2C007C41557BFE" modified="2013-07-24" version="1">MEVYQQLAGFGGGLPVDVLHGVAPHVAPQARKGKGVVVDLLAAGEVAHNLGEGDLDALGGNQPGQHVKIRGLGGGAHVLFGQQQAAHIQARLVNAVVAPPGAAELQGAGDFLPGAQGEHVPAVGVVADGGVGLVGKAQALAHVEVYLHHRQGQELVVDHHLGQGGGVVLGGVFLLEGGLHLQALAPQPVVQDNLEDVQRRQQKEDTKRRHVTWTNLPWAGAQTGAAPGPPPSGPGRSPPCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJK0</accession>
    <name>R6ZJK0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glutamate 5-kinase</fullName>
            <ecNumber evidence="7">2.7.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Gamma-glutamyl kinase</fullName>
            <shortName evidence="7">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">proB</name>
        <name evidence="9" type="ORF">BN815_01838</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + L-glutamate = ADP + L-glutamyl 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:14877"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 1/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the glutamate 5-kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.11" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30627">
        <property type="protein sequence ID" value="CDD30627"/>
        <property type="gene ID" value="BN815_01838"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00359"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004349">
        <property type="term" value="F:glutamate 5-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04242">
        <property type="entry name" value="AAK_G5K_ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00456">
        <property type="entry name" value="ProB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041739">
        <property type="entry name" value="G5K_ProB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001057">
        <property type="entry name" value="Glu/AcGlu_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011529">
        <property type="entry name" value="Glu_5kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005715">
        <property type="entry name" value="Glu_5kinase/COase_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019797">
        <property type="entry name" value="Glutamate_5-kinase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000729">
        <property type="entry name" value="GK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00474">
        <property type="entry name" value="GLU5KINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01027">
        <property type="entry name" value="proB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00902">
        <property type="entry name" value="GLUTAMATE_5_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 7" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AA_kinase" evidence="8">
        <location>
            <begin position="8"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="174"/>
            <end position="175"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="216"/>
            <end position="222"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="262" mass="28214" checksum="B596B4B4349F74A2" modified="2013-07-24" version="1">MELKDAQVLVVKVGTSTLTYENGKVNLRRLERLCRTLSDLQNAGRKLVLVSSGAIGVGMGKLGLPQRPEETEKKQALAAIGQCELMFLYDKFFGEYDHTVAQVLLTADVVDFPRGRENVQNTFRELLSMGVIPVVNENDTVETQELEGKNFGDNDTLSAVVAGLCGAQGLIILTDIDGLYDSDPRKNPQARRIPRVEEITPAVEELAGGAGSNRGTGGMATKLKAAKLAKSQGIPTAVISGSHTETLYQLLRGEDVGTVFPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKB8</accession>
    <name>R6ZKB8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_02069</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000340">
        <property type="protein sequence ID" value="CDD30907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30907">
        <property type="protein sequence ID" value="CDD30907"/>
        <property type="gene ID" value="BN815_02069"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="331" mass="36680" checksum="CD24FE762328887E" modified="2013-07-24" version="1">MSLLEVKNLHTYFKTKKGIVKAVNDVTYSLDAGKTLGIVGESGSGKSVSAMSIIKLLDGNGYIESGEITFDGKDIRNCTEKEMYHIRGNEISVIFQEPMTSLNPVFTVERQIGETLQIHQNMSKKEARAKAVGLLADVKIPNPERVAKQYPFQLSGGMRQRVMIAMALACKPKLLIADEPTTALDVTIQAQILKLMNDLKREMGTSILFITHDLGVIHEMADEVAVMYCGQIVEKAPARTIFHDGTYSHPYTEGLMTSIPQLNTPKGEKLDAIPGSVPNPLYLPQGCKFAPRCKYCTQKCQEAEPTLHEVEPGHVVRCFYPEKAVRKEHGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL36</accession>
    <name>R6ZL36_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Preprotein translocase YajC subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02306</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YajC family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31162">
        <property type="protein sequence ID" value="CDD31162"/>
        <property type="gene ID" value="BN815_02306"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003849">
        <property type="entry name" value="Preprotein_translocase_YajC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33909">
        <property type="entry name" value="PTHR33909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02699">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01853">
        <property type="entry name" value="YAJCTRNLCASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01323">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00739">
        <property type="entry name" value="yajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="113" mass="12440" checksum="44A8C37D2DDFCE69" modified="2013-07-24" version="1">MNHLMALDSTASASAAGGMSMIVMLLVYGVFIVALYFIFFRPQSKKKKKEQEMRKNAQVGDEITTIGGICGRIVAVKDEVDSIVIETGSDRSKMLIKRWAIGSVDTVHEDDQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLB0</accession>
    <name>R6ZLB0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Penicillinase repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02381</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BlaI transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000386">
        <property type="protein sequence ID" value="CDD31237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31237">
        <property type="protein sequence ID" value="CDD31237"/>
        <property type="gene ID" value="BN815_02381"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005650">
        <property type="entry name" value="BlaI_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03965">
        <property type="entry name" value="Penicillinase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="136" mass="15480" checksum="5E9D1A8DFCDE0DB6" modified="2013-07-24" version="1">MKKRKRFPLTKSELALMEILWDADRPLGRPEILEAAISEKGEPLFAVNSFHLLINDLIDKEYIVVVGGLGKEQNYARRYAPTVTRNEHFALQITSSPKYTPADIPAIVCSLIKYSKVEDVDGLLQEIEKAVRRRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLS5</accession>
    <name>R6ZLS5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00335</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000420">
        <property type="protein sequence ID" value="CDD31407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31407">
        <property type="protein sequence ID" value="CDD31407"/>
        <property type="gene ID" value="BN815_00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016881">
        <property type="term" value="F:acid-amino acid ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="2">
        <location>
            <begin position="135"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="300" mass="33095" checksum="3B7716A22F80CBF2" modified="2013-07-24" version="1">MGVFTNFSEDHIGGVEHKDMQEYMESKAKLFSLCKVGVVNADDPSLEGILQGHTCQVKTYGFEAPADLRGADCRHLNKPGFLGIAFEVSGEEDFTAEVDIPGRFNAYNALAAIGACHELGVPVEAMKQGLSTVKVKGRVEPVPVPGNYTLLLDYAHNGVGMENILTTLREYHPKRLICMFGAGGNRPKVRRYEMGEISGRLADISVLTADNSRFEDVNDIIADIKVGMAKTEGKYVEIPDRREAIRWCLENAQEGDIIVLAGKGHEDYQEIQGEKRPFDERVVIRELLEEMGTPQPQAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6XTZ5</accession>
    <name>R6XTZ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sugar-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00535</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000022">
        <property type="protein sequence ID" value="CDD27198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27198">
        <property type="protein sequence ID" value="CDD27198"/>
        <property type="gene ID" value="BN815_00535"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD27198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="340" mass="37223" checksum="139F1EB2901735D5" modified="2013-07-24" version="1">MAATIKDIARETGLSLATISKYLNGGNLREKNRAAIEAAIKKLDYHVNEYARGLKSKKSRTVGVVLPEISNLFNMKIVAVFERVLQENGYSVIVTDCQNNLEQEASSVDFLLKKQVDGIINVPIGSSSRHLRPAVEKKVPILLLDRPLEDLNGVASCVLIDNRGAARLGVRRLLQAGHRRIGVLVGSDEVHTAQMRLRGYRDALEEYGVEYDESLVRRCDLTLEGGYRQARRLLKANTGMTAMFLTNYDLTLGALIALNERGVQIPGEMSVVGFDNIMDLSRVFRPSLTIVSQPLEQIGLQAARLMLDQLSGGKDATPMTITLAASLKEGGSVEAPPAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUS8</accession>
    <name>R6XUS8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00028</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27483">
        <property type="protein sequence ID" value="CDD27483"/>
        <property type="gene ID" value="BN815_00028"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="39" mass="4286" checksum="DAE3D88B4AC098F7" modified="2013-07-24" version="1">MYLAKNHIFKIILLVATVVLAALQGVAEMEEDSVTNNIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUZ2</accession>
    <name>R6XUZ2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00642</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000047">
        <property type="protein sequence ID" value="CDD27513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27513">
        <property type="protein sequence ID" value="CDD27513"/>
        <property type="gene ID" value="BN815_00642"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13557" checksum="3B15DCF7547396A2" modified="2013-07-24" version="1">MFLRVALTLLLEGIVFFLFGYRQKRSWILFFLVNGLTQLFVNLLLLNFVGALGNLYSAKLAFWFLYLPMEILVILLELFLFCPMLKEKKRWNAVLYTIAANLCSWLLGGALLAYLPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWS5</accession>
    <name>R6XWS5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000081">
        <property type="protein sequence ID" value="CDD28198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28198">
        <property type="protein sequence ID" value="CDD28198"/>
        <property type="gene ID" value="BN815_00782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="33" mass="3746" checksum="897AD37EF2EFCAE8" modified="2013-07-24" version="1">MSKFERLARVRARGEFLTFANTAPPIGLQIKIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXD9</accession>
    <name>R6XXD9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28408">
        <property type="protein sequence ID" value="CDD28408"/>
        <property type="gene ID" value="BN815_00842"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="89" mass="9241" checksum="215D2B8E269522BB" modified="2013-07-24" version="1">MAEFFNAALPFVAMGLTIALLAANGRRGRKNYLTEGMCLGLALGVGLADALHMELGLAMSLGMLLGAALGQLAPKGGKESTKEDDHETH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6XYL5</accession>
    <name>R6XYL5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">IU_nuc_hydro domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00988</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000107">
        <property type="protein sequence ID" value="CDD28853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28853">
        <property type="protein sequence ID" value="CDD28853"/>
        <property type="gene ID" value="BN815_00988"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016799">
        <property type="term" value="F:hydrolase activity, hydrolyzing N-glycosyl compounds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.245.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001910">
        <property type="entry name" value="Inosine/uridine_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023186">
        <property type="entry name" value="IUNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036452">
        <property type="entry name" value="Ribo_hydro-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12304">
        <property type="entry name" value="PTHR12304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01156">
        <property type="entry name" value="IU_nuc_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53590">
        <property type="entry name" value="SSF53590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IU_nuc_hydro" evidence="3">
        <location>
            <begin position="22"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="309" mass="34606" checksum="E28C6AA85871ED99" modified="2013-07-24" version="1">MKTKDLAGLLHRLERPTGPVDVVLDTDTYNEVDDQFALSYLLASQDQLRVKALYAAPFFNENSTGPADGMEKSYQEILKLLGLAGCQELRDVVFRGSASYLPDEGTPVPSPAAEDLARRAMGYSPEAPLYVVAIGALTNIASALLLEPAIAQRITLVWLGGNAWDWPDNQEFNAFQDVAADRVVFGSGAAVVQLPCQGVVSAFRVSGPELRQYLQGKSPLCDYLVELVEESQRHWNAGPCWTRPIWDVTAVGWLLGERFMLDRLEPSPIFQYDHHYSFDKSRHPMRYVYHIQRDELFADLFEKLPKLGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZT4</accession>
    <name>R6XZT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Capsular polysaccharide biosynthesis protein CpsC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00510</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000014">
        <property type="protein sequence ID" value="CDD27125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27125">
        <property type="protein sequence ID" value="CDD27125"/>
        <property type="gene ID" value="BN815_00510"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003856">
        <property type="entry name" value="LPS_length_determ_N_term"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02706">
        <property type="entry name" value="Wzz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Wzz" evidence="7">
        <location>
            <begin position="14"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="252" mass="27515" checksum="9ADA54A2C7AAEA2C" modified="2013-07-24" version="1">MDKTQNPNNNEMVIDLVQLAKALWRRAWAIVLAMVIFGGAAFGYARFLITPLYQASAMMYVNNSSINVGSTQVDLSDLSAAQSLVETYIVILKTRGTLEQVIEQENLPYDYETLSDMIEAGAVNSTEVFEIQVTSADPEEAERIANCIAELLPGRISEIVEGSSVKIVDYAIVPSHKSSPSISRYTLLGLLLGAVVSCGVIVLMELFDEQIRDEDYVRQTFDLPLLAAVPDLTGKGAGDSYYKTTSGKEAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZV0</accession>
    <name>R6XZV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5 6">50S ribosomal protein L20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplT</name>
        <name evidence="7" type="ORF">BN815_01119</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 6">Belongs to the bacterial ribosomal protein bL20 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29298">
        <property type="protein sequence ID" value="CDD29298"/>
        <property type="gene ID" value="BN815_01119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07026">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1900.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00382">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005813">
        <property type="entry name" value="Ribosomal_L20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035566">
        <property type="entry name" value="Ribosomal_protein_L20_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10986">
        <property type="entry name" value="PTHR10986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00453">
        <property type="entry name" value="Ribosomal_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00062">
        <property type="entry name" value="RIBOSOMALL20"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74731">
        <property type="entry name" value="SSF74731"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01032">
        <property type="entry name" value="rplT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00937">
        <property type="entry name" value="RIBOSOMAL_L20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 6" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="117" mass="13268" checksum="4B78B22E668C6739" modified="2013-07-24" version="1">MARVKGAMMTRKRRKKVLKLAKGYWGAKSRHFKMAKQAVMKSGNYAYIGRKQRKRDFRRLWITRISAACRINGINYSTFMNGLKKAGVTLNRKMLSEIAIADPAGFTALVEKAKAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y013</accession>
    <name>R6Y013_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC transporter solute-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000025">
        <property type="protein sequence ID" value="CDD27215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27215">
        <property type="protein sequence ID" value="CDD27215"/>
        <property type="gene ID" value="BN815_00541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="390" mass="43550" checksum="57359B72F6F1C290" modified="2013-07-24" version="1">MTYLKDGTEIHWVINPNQDGVYQQKLDEALLNQATAAADDKIDIFLSETDYVYKYTDADADVAMPLTDLGIDPDTDLADQYPFTKTTASDQNGVQRGSTWQCCPGLLVYRRDIAKDVFGTDDPAVIGEKVKDWDTLKQTAEELKAKGYFTFASYADTFRVYGNNVSQPWVTAGETTVKVDPLIMDWIESSKEWLDAGYLDKTVKGQFNDDWNKAMGSASKVFAFLLPPWGIDFTLAPNWDGVDGTWAVCNPPMTYNWGGSYVHACTGTDNPEHVKDIILSMTANKGNLIKISKDYQDFTNTVSGMQEASTDDSFASSFLGGQNAYAYYAPVAENIQIAPLSAYDQGCVELIQNSFSDYFQGNVDFDRAKENFETAIKERYPDITDVQWPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0C3</accession>
    <name>R6Y0C3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">ABC transporter domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_01166</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ABC transporter superfamily. Ycf16 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000150">
        <property type="protein sequence ID" value="CDD29468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29468">
        <property type="protein sequence ID" value="CDD29468"/>
        <property type="gene ID" value="BN815_01166"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010230">
        <property type="entry name" value="FeS-cluster_ATPase_SufC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43204">
        <property type="entry name" value="PTHR43204"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="242" mass="25922" checksum="DFBA4818D14038A0" modified="2013-07-24" version="1">MLELQHISWTAPGGSQVVRDVSFSVPEGKLTVITGPNGGGKTTLAKLIAGIETPDSGKILLDGQDITPLDVTQRARAGVSFAFQQPVRFKGFTVRRLLELAAGKPLPASGVCEMLGRVGLCGREYLDREVDATLSGGEMKRIEIATVLARHTKLSLFDEPEAGIDLWSFTNLIDVFQSLRGRLNGTLLIISHQERILQIADEIVIISGGQLQEKGPAGDILPKLMEGSASCGGCVKREAVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0U4</accession>
    <name>R6Y0U4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000168">
        <property type="protein sequence ID" value="CDD29658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29658">
        <property type="protein sequence ID" value="CDD29658"/>
        <property type="gene ID" value="BN815_00101"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="166" mass="19044" checksum="76010BBBAB50562D" modified="2013-07-24" version="1">MTVISYQSKLVLRILKAGETYRAKPNLTLRGEYNAMIDLLGLHCECPIFGVLKGKKQNTGGKVSGSVRLVLDVPDKYIHLTEYAVWADFLYAFKFTKPGNYKSLRPDCEELTVRRYNEILADLQEQRKPSQYQCPQVVLEKIDPAWLKSYHIVGKGEGFLRKLFGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y122</accession>
    <name>R6Y122_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000046">
        <property type="protein sequence ID" value="CDD27500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27500">
        <property type="protein sequence ID" value="CDD27500"/>
        <property type="gene ID" value="BN815_00037"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="241"/>
            <end position="257"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="901" mass="103570" checksum="945F0AC3966F9675" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1K4</accession>
    <name>R6Y1K4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sporulation protein YqfD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27695">
        <property type="protein sequence ID" value="CDD27695"/>
        <property type="gene ID" value="BN815_00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010690">
        <property type="entry name" value="YqfD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06898">
        <property type="entry name" value="YqfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="189" mass="20856" checksum="12D1433296A6722A" modified="2013-07-24" version="1">MSPGDTVTAGQLLIAGLYEQELDPYSPPPDEPYQVLGAARGSVRALTYREFSVEVPQEKTVLVPTGRRSQAALEVFGLRVPLGLARQPEGSFRVWRSSAAWNPLGRALPLAWEVTTWETCREEAVPLEEAGQEEAALLALRRLQREELPPGSKVVEEELSYTGEGAARRLKAVCRCEEEIGLVRKISVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1V8</accession>
    <name>R6Y1V8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30023">
        <property type="protein sequence ID" value="CDD30023"/>
        <property type="gene ID" value="BN815_01349"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042573">
        <property type="entry name" value="GNAT_acetyltra_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027365">
        <property type="entry name" value="GNAT_acetyltra_YdfB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31143">
        <property type="entry name" value="PTHR31143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12746">
        <property type="entry name" value="GNAT_acetyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="133"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="267" mass="29393" checksum="573551B20557DFDD" modified="2013-07-24" version="1">MVQVPKEKLACLEPLFAGWEETLVWSVVQGCMGKAWADSLERPRAALLWVGDFLFLGGDAEAPVARALAGFLPRELANGVALAVPQNESWLRLLEEAHGQRGKPITRYAIRKEPGMFDPGKLQANLEKLPQGFTLEPIDEGLYHALLELDWARDFCAQFGSWEEYAAHGCGFVAIKDGQVAAGASSYTWYRGGIEIEIDTKAEYRRQGLALCCASALLLHCLERGLYPSWDAATPISVALAEKLGYHFSHAYPCLEIAVPTQKEDLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1Y8</accession>
    <name>R6Y1Y8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription-repair-coupling factor</fullName>
            <shortName evidence="8">TRCF</shortName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mfd</name>
        <name evidence="11" type="ORF">BN815_01360</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the C-terminal section; belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">In the N-terminal section; belongs to the UvrB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000191">
        <property type="protein sequence ID" value="CDD30058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30058">
        <property type="protein sequence ID" value="CDD30058"/>
        <property type="gene ID" value="BN815_01360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000716">
        <property type="term" value="P:transcription-coupled nucleotide-excision repair, DNA damage recognition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00969">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036101">
        <property type="entry name" value="CarD-like/TRCF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003711">
        <property type="entry name" value="CarD-like/TRCF_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004576">
        <property type="entry name" value="Mfd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037235">
        <property type="entry name" value="TRCF-like_C_D7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005118">
        <property type="entry name" value="TRCF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041471">
        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02559">
        <property type="entry name" value="CarD_CdnL_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03461">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17757">
        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01058">
        <property type="entry name" value="CarD_TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00982">
        <property type="entry name" value="TRCF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141259">
        <property type="entry name" value="SSF141259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143517">
        <property type="entry name" value="SSF143517"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00580">
        <property type="entry name" value="mfd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="9">
        <location>
            <begin position="630"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="10">
        <location>
            <begin position="783"/>
            <end position="966"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1158" mass="128589" checksum="BB50F12C959F2BF1" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2A7</accession>
    <name>R6Y2A7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Oligopeptide/dipeptide ABC transporter ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01436</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30193">
        <property type="protein sequence ID" value="CDD30193"/>
        <property type="gene ID" value="BN815_01436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="14"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="50"/>
            <end position="57"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="340" mass="37808" checksum="430B31E256BB635E" modified="2013-07-24" version="1">MSAQVKPDNKAPLLEIRGLTKEFRQGKDRVLAVNHIDLDIQKGEVFGLVGESGCGKSTFGQMLVHLLDPSGGKILLNGRDITRPARRERKDLCKQMQIVFQDPYSSIDPNKTIGWLIEEPLKIHGIGKTKQERDEKVSQVLKAVGLDESYRTRWPNELSGGQRQRVAIAIALILDPDFVVCDEPVSALDVSVQAQVLNLLLDLRQQFGLTYLFISHDLNVVSYVSDRIGVMYLGNLVELGDGEAISQMPLHPYTEALFSASMEVEGDRDRIILSGDLPSPAHPPAGCPFHTRCFACEERCKTEKPQLREFEGGRFCACHLVEKRTGKKPVAHNEALEGNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2G4</accession>
    <name>R6Y2G4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein kinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01491</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000211">
        <property type="protein sequence ID" value="CDD30248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30248">
        <property type="protein sequence ID" value="CDD30248"/>
        <property type="gene ID" value="BN815_01491"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Protein kinase" evidence="3">
        <location>
            <begin position="46"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="313"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30248.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1102" mass="117355" checksum="2641A354EF8BA554" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Q9</accession>
    <name>R6Y2Q9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphoglucosamine mutase 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01567</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30333">
        <property type="protein sequence ID" value="CDD30333"/>
        <property type="gene ID" value="BN815_01567"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016868">
        <property type="term" value="F:intramolecular transferase activity, phosphotransferases"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="2">
        <location>
            <begin position="3"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="264" mass="29120" checksum="6986985A75023719" modified="2013-07-24" version="1">MSRYFGTDGFRGEANINLTADHAYKVGRFLGWYYTEKRARAAEEGRPTKEGPARIVIGKDTRRSSYMFEYSLVAGLVASGADAYMLHVTTTPSVAYIARVDDFDCGIMISASHNPYYDNGIKLINDQGEKMDEETIELVEDYLDGKLVAFGKQWPELPFAQKDKIGCTVDYVSGRNRYIGYLISLGMYSFRGVKVGLDCANGSSWNIAKAVFDALGADTTVINAEPNGLNINLNAGSTHVFLPRGEGGPGLRQRLQLEHRQGCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2Y3</accession>
    <name>R6Y2Y3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallo-beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01604</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000236">
        <property type="protein sequence ID" value="CDD30383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30383">
        <property type="protein sequence ID" value="CDD30383"/>
        <property type="gene ID" value="BN815_01604"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="12"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="260" mass="27977" checksum="40FD425F628D52A8" modified="2013-07-24" version="1">MARLCPLFSGSGGNSYYIGSRSAGLLIDAGRSARQLDRMLQRCGIDPMAIQGILITHEHSDHIAGVRVFAKKYGIPVFASQGTLLAMQPSLEGVESWVLEGPLQLAGMEVTPFATPHDSAQSLGFRIQTADGRQFALATDLGVVTPCVREHLLGAEFVVLESNHDREMLRNGPYPAYLKRRILAGTGHLSNGDCAAFLPELARAGAKRFLLAHLSGENNTPSLARQEAVSALFAAGYQEGTGFWLDVAPVENQEGKSIIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y351</accession>
    <name>R6Y351_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ion-translocating oxidoreductase complex subunit B</fullName>
            <ecNumber evidence="5">7.-.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Rnf electron transport complex subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rnfB</name>
        <name evidence="9" type="ORF">BN815_00801</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 3 [4Fe-4S] clusters.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The complex is composed of six subunits: RnfA, RnfB, RnfC, RnfD, RnfE and RnfG.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.-.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000084">
        <property type="protein sequence ID" value="CDD28275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28275">
        <property type="protein sequence ID" value="CDD28275"/>
        <property type="gene ID" value="BN815_00801"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00463">
        <property type="entry name" value="RsxB_RnfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010207">
        <property type="entry name" value="Elect_transpt_cplx_RnfB/RsxB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01944">
        <property type="entry name" value="rnfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S" evidence="8">
        <location>
            <begin position="31"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="160"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="205"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="234"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Hydrophobic" evidence="5">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="48"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="261" mass="26487" checksum="1E4FAF88D7B3CBB4" modified="2013-07-24" version="1">MEILTPILIVGIIGLLAGVILAVASIVMAVPKDEKAEALEEVLPGANCGACGFSGCPGYAAAMAKGEAQPGLCSPGGAEVAQKCAEILGGGDVQVEYKTALVHCLGSYDNTTDKMLYDGIQSCSAAAFLMGGVTSCRFGCMGLGDCQRACQYGAITVCNGLARIDPAKCKGCSQCVAACPKGIISLVPLKKQAVVRCSSCDKAKGTMAVCNIGCIGCGKCMRTCPSGAITVENGLAKVDPQKCTACGQCVEACPRHVIAML</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3S9</accession>
    <name>R6Y3S9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Putative fluoride ion transporter CrcB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">crcB</name>
        <name evidence="10" type="ORF">BN815_01845</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 9">Important for reducing fluoride concentration in the cell, thus reducing its toxicity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the CrcB (TC 9.B.71) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000291">
        <property type="protein sequence ID" value="CDD30638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30638">
        <property type="protein sequence ID" value="CDD30638"/>
        <property type="gene ID" value="BN815_01845"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903425">
        <property type="term" value="F:fluoride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00454">
        <property type="entry name" value="CrcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003691">
        <property type="entry name" value="CrcB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28259">
        <property type="entry name" value="PTHR28259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02537">
        <property type="entry name" value="CRCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00494">
        <property type="entry name" value="crcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="93"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="123" mass="12758" checksum="78D42598911EDBCD" modified="2013-07-24" version="1">MGSVIWVALGGAVGAVGRYGISLLPWKGAFPLLTLATNFLGAVAIGFLSGLFSQRLLGERGKLFWQTGVCGGFTTFSTFSLEAVTLFQNGRYLLGGAYVLLSVALCVAGVLLGQCLARAVAHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3T5</accession>
    <name>R6Y3T5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00856</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28500">
        <property type="protein sequence ID" value="CDD28500"/>
        <property type="gene ID" value="BN815_00856"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="17019" checksum="428C9C7E98EC5F8A" modified="2013-07-24" version="1">MGEIIYKKQFHREPIDETEPEVANFTDSGNAPSFDEIMKEIYSNVTYLVLPGREKKARNFIQKAIEISNDYELDIEIREHLSHISVTYTFDCCAGMGFLKSIIEMADDISFFDHIGGYDLVMSLDFYTKAVFKRGRLIQPKWSDLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3V7</accession>
    <name>R6Y3V7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">Beta sliding clamp</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ORF">BN815_00863</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Forms a ring-shaped head-to-tail homodimer around DNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the beta sliding clamp family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000093">
        <property type="protein sequence ID" value="CDD28520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28520">
        <property type="protein sequence ID" value="CDD28520"/>
        <property type="gene ID" value="BN815_00863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00140">
        <property type="entry name" value="beta_clamp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001001">
        <property type="entry name" value="DNA_polIII_beta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022635">
        <property type="entry name" value="DNA_polIII_beta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022637">
        <property type="entry name" value="DNA_polIII_beta_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022634">
        <property type="entry name" value="DNA_polIII_beta_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30478">
        <property type="entry name" value="PTHR30478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00712">
        <property type="entry name" value="DNA_pol3_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02767">
        <property type="entry name" value="DNA_pol3_beta_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02768">
        <property type="entry name" value="DNA_pol3_beta_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000804">
        <property type="entry name" value="DNA_pol_III_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00480">
        <property type="entry name" value="POL3Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00663">
        <property type="entry name" value="dnan"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 11" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 11" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="7 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_pol3_beta" evidence="12">
        <location>
            <begin position="1"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_2" evidence="13">
        <location>
            <begin position="129"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="DNA_pol3_beta_3" evidence="14">
        <location>
            <begin position="244"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR000804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="CDD28520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="367" mass="40330" checksum="2BC04C6D5C0CF277" modified="2013-07-24" version="1">MKFTVNKSDITEAVSNIQRAVSTKTSIPALEGILLSATETGLELCAYDLELGITTVIPAFVMEPGKAVLSAKLFSDIVRRTPAETVTVSVDEKNMATLESGYSRFSIIGIPAEEFPELPKLSDSTQISLPGALLKSMIRQTLFAIAESDAKPIHQGSLFSLENGILDVVSVDGYRLAVRREPVDFSEDLSFVVPGKTLSELLKLIKDSEEPVEISAGRRHILFKIDNYTVISSLLEGEFLNYKAAIPPESQTEVVLKTREAIDSVERVSLLITDRLKSPIRCLFDNNEVKLNCTTSMGRASDQLDVEMTGQSVEIGFNNRYLLEALRNTECDEVKVQLGGPLSPMKVVPKEGDSFLFLVLPVRLKSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y460</accession>
    <name>R6Y460_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Methylated-DNA--protein-cysteine methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.63</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">6-O-methylguanine-DNA methyltransferase</fullName>
            <shortName evidence="7">MGMT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">O-6-methylguanine-DNA-alkyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_01952</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 7">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the MGMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.63" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30748">
        <property type="protein sequence ID" value="CDD30748"/>
        <property type="gene ID" value="BN815_01952"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006307">
        <property type="term" value="P:DNA dealkylation involved in DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00772">
        <property type="entry name" value="OGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023546">
        <property type="entry name" value="MGMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036631">
        <property type="entry name" value="MGMT_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53155">
        <property type="entry name" value="SSF53155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 7 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="8">
        <location>
            <begin position="70"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; methyl group acceptor" evidence="7">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="154" mass="16324" checksum="E4CC748ABC6F6FF8" modified="2013-07-24" version="1">MEHKLVLPSPVGELTLTEENGALTGLYFGARPGGEEGPSPLLEEAARQLRAYFAGQRQAFSLPLAPRGTAFQLQVWQALQTIPYGEVRTYGEIARAIGKPKACRAVGMANHKNPISIIVPCHRVVGADGSLTGYGGGLAAKEFLLALEQGGRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y548</accession>
    <name>R6Y548_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Release factor glutamine methyltransferase</fullName>
            <shortName evidence="6">RF MTase</shortName>
            <ecNumber evidence="6">2.1.1.297</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N5-glutamine methyltransferase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-(glutamine-N5) MTase PrmC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Protein-glutamine N-methyltransferase PrmC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prmC</name>
        <name evidence="9" type="ORF">BN815_02197</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-methionine = H(+) + N(5)-methyl-L-glutaminyl-[peptide chain release factor] + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42896"/>
            <dbReference type="Rhea" id="RHEA-COMP:10271"/>
            <dbReference type="Rhea" id="RHEA-COMP:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:61891"/>
            <dbReference type="EC" id="2.1.1.297"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.297" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000365">
        <property type="protein sequence ID" value="CDD31043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31043">
        <property type="protein sequence ID" value="CDD31043"/>
        <property type="gene ID" value="BN815_02197"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102559">
        <property type="term" value="F:protein-(glutamine-N5) methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036009">
        <property type="term" value="F:protein-glutamine N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018364">
        <property type="term" value="P:peptidyl-glutamine methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02126">
        <property type="entry name" value="RF_methyltr_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004556">
        <property type="entry name" value="HemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040758">
        <property type="entry name" value="PrmC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019874">
        <property type="entry name" value="Release_fac_Glu-N5_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17827">
        <property type="entry name" value="PrmC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00536">
        <property type="entry name" value="hemK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03534">
        <property type="entry name" value="RF_mod_PrmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PrmC_N" evidence="8">
        <location>
            <begin position="5"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="MTS" evidence="7">
        <location>
            <begin position="97"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="191"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="284" mass="30257" checksum="9DFF80760A2094FD" modified="2013-07-24" version="1">MTCRQLYLEARRRLSQAGIDSPGVDAVLLSQRFLGLDRPGLALHGEEEPAPEQAAAFLQAVEERAARRPLQYILGEWEFLGLPLAVGEGVLCPREDTAVLVESLAQGLQGRPAPRGLDLCAGTGAVSLGLLTFLPGAAVQCVELSDKAFPYLEENLRRHGKGQVTARKGDVLSPALAGEFAPGSLDFVASNPPYIETGELATLQPEVRQEPALALDGGGDGLVFYRAIAQLWAPLVKPGGLVAVEIGETQGPAVAELFQQRGLVDVEILQDWAGLDRVVRGKQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5C3</accession>
    <name>R6Y5C3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5 8">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">clpP</name>
        <name evidence="11" type="ORF">BN815_02287</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 9">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 10">Belongs to the peptidase S14 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5 8"/>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31143">
        <property type="protein sequence ID" value="CDD31143"/>
        <property type="gene ID" value="BN815_02287"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018215">
        <property type="entry name" value="ClpP_Ser_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00493">
        <property type="entry name" value="clpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00381">
        <property type="entry name" value="CLP_PROTEASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 8" id="KW-0720">Serine protease</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="193" mass="21192" checksum="B080E25A851A45FA" modified="2013-07-24" version="1">MSLVPYVVEQTSRGERSYDIFSRLLNDRIILLNEEVNSASAGVVVAQLLYLEGQDPEKDISLYINSPGGVITDGMAIYDTMQYIKCDVSTICLGMAASMGAFLLAAGTKGKRFALPNSEIMIHQPSGGAQGQATDISIHANHILRVKDKLNQILSERTGQPLDVVKCDTERDNFMTAQEALEYGLIDKVIEHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5I0</accession>
    <name>R6Y5I0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02342</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000383">
        <property type="protein sequence ID" value="CDD31198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31198">
        <property type="protein sequence ID" value="CDD31198"/>
        <property type="gene ID" value="BN815_02342"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="133"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="351" mass="38820" checksum="9C462E910C59F268" modified="2013-07-24" version="1">MKIAIIGCGTIANAAHIPSYLNNDEAEIKYFCDIIPERAQAAVEKYGCGTAVEDYHQVLSDPEVEAVSVCTPNNVHPQIAIDALRAGKNVLCEKPAARTYAEALEMQKAQHETGKVLNIGVVNRFNDGVNRIKEYIDQGRLGNIHHVYVSFRAHRSIPGLGGDFTNKAVSGGGVLIDWGVHYLDIVMYCCGDPAIKTVSGETFCKLGKNMKEYVFTDMWAARKPKYDGVYDVDDSVTGLIRTSGPVITLNGAWAQNIGEEERYIDFMGDKGGIRLQYGSDFTVYTTENNGLISFTPKFQTREMFQNEIDGFINCIKTGEKLPSHIDTVIVTAKMMQAIYDSAEQHKEIVLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5X0</accession>
    <name>R6Y5X0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">NlpC/P60 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00278</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000406">
        <property type="protein sequence ID" value="CDD31343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31343">
        <property type="protein sequence ID" value="CDD31343"/>
        <property type="gene ID" value="BN815_00278"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007921">
        <property type="entry name" value="CHAP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05257">
        <property type="entry name" value="CHAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="NlpC/P60" evidence="4">
        <location>
            <begin position="320"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="461" mass="48734" checksum="6BF5BE201B26ACF8" modified="2013-07-24" version="1">MSEPDKQQFGDGGDQWGEAARNVVNAAKELGKEGVKLAASGTAAGVANSSSALVQVGVEGGKAVSEIAAGTAAGGPWGAVLSTAWSLRHTLYKILVCICLFFLILIVLLTSLPTIVTNQVFGLNGADMANPLTLSQSMTRLSGVVADTLEAAHQAALERVNDLIAEGGYDQELSLEALDDQAGDSSYDVAYVLCSYSVSMEQLGTSQEDMVRKLSNLVDKLFPVTYEVKTAEVQVEQDTSSEGENSDSSSPQTQSVSYLAATIHPLNQDAILEAFQLDPEAMYGDFTITCGEAITNMAAALKLTLYGSMLGGIGGGTGTRQGGEEVAAIALSQVGQVGGYPYWSWYGFSSRVEWCACFVSWCYAQVGLSEPRFSGCTSGGMAWFQSHGQWGDRNCADIAPGDAIFFDWDGSGNADHVGIVVGVDESRVYTVEGNSGNDACNYKSYLRGSSVIRGYGLMLWP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y611</accession>
    <name>R6Y611_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Iron-dependent transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01128</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DtxR/MntR family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000141">
        <property type="protein sequence ID" value="CDD29335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29335">
        <property type="protein sequence ID" value="CDD29335"/>
        <property type="gene ID" value="BN815_01128"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001367">
        <property type="entry name" value="Fe_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036421">
        <property type="entry name" value="Fe_dep_repressor_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022687">
        <property type="entry name" value="HTH_DTXR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022689">
        <property type="entry name" value="Iron_dep_repressor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02742">
        <property type="entry name" value="Fe_dep_repr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01325">
        <property type="entry name" value="Fe_dep_repress"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00529">
        <property type="entry name" value="HTH_DTXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47979">
        <property type="entry name" value="SSF47979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50944">
        <property type="entry name" value="HTH_DTXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH dtxR-type" evidence="5">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007871"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD29335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="127" mass="14143" checksum="BA24E6DFE8D15C6C" modified="2013-07-24" version="1">MPKIQESAENYLETILVLKERNGTVRSVDIAAEMGFSKPSVSVAMKNLREQECITMGEDGLISLTEKGRKIAESVYERHTLFTQWLVSLGVDAATAAQDACRIEHVLSKETFEAIKRHVESGFSSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y6R9</accession>
    <name>R6Y6R9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4037 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01193</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000162">
        <property type="protein sequence ID" value="CDD29555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29555">
        <property type="protein sequence ID" value="CDD29555"/>
        <property type="gene ID" value="BN815_01193"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025117">
        <property type="entry name" value="DUF4037"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13228">
        <property type="entry name" value="DUF4037"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4037" evidence="1">
        <location>
            <begin position="145"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="361" mass="41025" checksum="7A21A77623CDAF68" modified="2013-07-24" version="1">MAAFIKGKELCRGFFEQVAKPTLDRRFPGLVYSAGLLGYGSDVLGYDDVVSTDHMWGPRFYLFLREEDKALQPRILEAFAQEFPYTYRGYSVHFSRPDPNDKGIRHAEAITQGQVDPLIFFHTFEEYLDFYLGTHHPETLTDVEWLSLPEHHLLALAKAEFYVDMLHCQERLEPLRFYPENVWLYLVASCWSLVAEEQAFVKRCASVGDSLGSALVCGRIAERLMRLCFLYCRQYAPYSKWFGTAFQQLPIPQELKDAIGAAVAATDTTQREDNLVRAQQLTAQLHNSLGVTEAVPAEIVPYFGRDIKVIYADKIAHTVRGHVQGALSSAPLIGSLSQVANFTTLYEDIPLRHRVEGLYQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7D6</accession>
    <name>R6Y7D6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01273</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000178">
        <property type="protein sequence ID" value="CDD29825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29825">
        <property type="protein sequence ID" value="CDD29825"/>
        <property type="gene ID" value="BN815_01273"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="8"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="148"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="24082" checksum="5D6755644EE37F0E" modified="2013-07-24" version="1">MPIPPVPVFQGITEQEWAQMAAACPMSRRLYEKGQTIFRQGDPAREMGVVLSGAVHIESVDLWGHRTLLSRVGPGQVFGETYALTGGPLLVDAVAAEDCEILAIRLGALLGENHAGASWQGKLLRNLVSIFAGKNRALSHRIFCTSPKTIRGRLVTYLSAQALEQGSSSFSIPFDRQQLADYLGVDRSALSKELGRMRDEGLLETRKNHFLLHRLGEGDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8H4</accession>
    <name>R6Y8H4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">GTP cyclohydrolase 1 type 2 homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01468</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP cyclohydrolase I type 2/NIF3 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30225">
        <property type="protein sequence ID" value="CDD30225"/>
        <property type="gene ID" value="BN815_01468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002678">
        <property type="entry name" value="DUF34/NIF3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036069">
        <property type="entry name" value="DUF34/NIF3_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13799">
        <property type="entry name" value="PTHR13799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01784">
        <property type="entry name" value="NIF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102705">
        <property type="entry name" value="SSF102705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00486">
        <property type="entry name" value="YbgI_SA1388"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="255" mass="27230" checksum="A14369F97C68CC73" modified="2013-07-24" version="1">MARIRDIYDIIDAVAPFSTALDFDNAGLLVGDGNTIVTRALLALDITPAVVAEAASMNANLILSHHPVIFHPLKSLGPRDVPYQLASRGIAALCCHTNLDLSPVCGVNVALGSKLGLRNIRREDVFGEDCLLFSGDLEEPLEPQAFAALVKEKLSAPAVKFCPGQGKVQRVFFCSGAGGGYVHQAACRGADAYLTGEMKHHEELEAAQSRLTCVAAGHYHTEKVFGEFLASYLRKRVPDTAFLLSQAEAAPMGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y983</accession>
    <name>R6Y983_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_01687</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000253">
        <property type="protein sequence ID" value="CDD30470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30470">
        <property type="protein sequence ID" value="CDD30470"/>
        <property type="gene ID" value="BN815_01687"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="4"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="331"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="538"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="554"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="364"/>
            <end position="371"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="615" mass="69767" checksum="DE52EB8694A6B19E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9F0</accession>
    <name>R6Y9F0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000269">
        <property type="protein sequence ID" value="CDD30510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30510">
        <property type="protein sequence ID" value="CDD30510"/>
        <property type="gene ID" value="BN815_01723"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011733">
        <property type="entry name" value="CHP02185_IM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09605">
        <property type="entry name" value="Trep_Strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02185">
        <property type="entry name" value="Trep_Strep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="14905" checksum="3F131580E770E1C4" modified="2013-07-24" version="1">MQKRWSVTILGIIMGIIWFATGMHWAFSLGYIGMGIIADLVAGAGHYRNKAINLLSYMLISLGGIYTYVVFFIDPEGWASTMLENGTEQSYIDTMSASAPSWLLAVIVVGTLVIAAFSGWIGGKMLKKQFEKAGITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9Q1</accession>
    <name>R6Y9Q1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Polyribonucleotide nucleotidyltransferase</fullName>
            <ecNumber evidence="6">2.7.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Polynucleotide phosphorylase</fullName>
            <shortName evidence="6">PNPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pnp</name>
        <name evidence="9" type="ORF">BN815_01841</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>phosphate + RNA(n+1) = a ribonucleoside 5'-diphosphate + RNA(n)</text>
            <dbReference type="Rhea" id="RHEA:22096"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the polyribonucleotide nucleotidyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.8" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000288">
        <property type="protein sequence ID" value="CDD30630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30630">
        <property type="protein sequence ID" value="CDD30630"/>
        <property type="gene ID" value="BN815_01841"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004654">
        <property type="term" value="F:polyribonucleotide nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01595">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012162">
        <property type="entry name" value="PNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015848">
        <property type="entry name" value="PNPase_PH_RNA-bd_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036456">
        <property type="entry name" value="PNPase_PH_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11252">
        <property type="entry name" value="PTHR11252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03726">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005499">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46915">
        <property type="entry name" value="SSF46915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03591">
        <property type="entry name" value="polynuc_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 6 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="623"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="702"/>
            <end position="727"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="702"/>
            <end position="717"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="486"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="492"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="727" mass="80984" checksum="D2FB7264C33245F5" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA21</accession>
    <name>R6YA21_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphomethylpyrimidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01964</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ThiD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30760">
        <property type="protein sequence ID" value="CDD30760"/>
        <property type="gene ID" value="BN815_01964"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01169">
        <property type="entry name" value="HMPP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045029">
        <property type="entry name" value="HMP/HMP-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004399">
        <property type="entry name" value="HMP/HMP-P_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PTHR20858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00097">
        <property type="entry name" value="HMP-P_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="2">
        <location>
            <begin position="11"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="265" mass="27891" checksum="0BAD9A6E9E85068B" modified="2013-07-24" version="1">MNTCLSIAGSDPSGGAGIQADLKTMTVNGVYAMCAITALTVQNTLGVTNILEVEPAFLGQQIDAVFQDIRPDAVKVGMVSSAGLIRVIAQKLRQHGAQNVVVDPVMVATSGSRLLESDAATALREELFPLATVVTPNIPEAQALSGWEIFAPVDMERAAQRIGDAYGCAVLCKGGHSLNDANDYLYRQGQGRWFPGRRIQNPNTHGTGCTLSSAIAANLAKGQDLETAVATAKEYLSGALATMLDLGHGSGPLDHAYSLRTHKED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAF1</accession>
    <name>R6YAF1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">LexA repressor</fullName>
            <ecNumber evidence="12">3.4.21.88</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">lexA</name>
        <name evidence="16" type="ORF">BN815_00795</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>Hydrolysis of Ala-|-Gly bond in repressor LexA.</text>
            <dbReference type="EC" id="3.4.21.88"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="12">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 12 13">Belongs to the peptidase S24 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.88" evidence="12"/>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28249">
        <property type="protein sequence ID" value="CDD28249"/>
        <property type="gene ID" value="BN815_00795"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00015">
        <property type="entry name" value="LexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006200">
        <property type="entry name" value="LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006199">
        <property type="entry name" value="LexA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006197">
        <property type="entry name" value="Peptidase_S24_LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01726">
        <property type="entry name" value="LexA_DNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00726">
        <property type="entry name" value="LEXASERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00498">
        <property type="entry name" value="lexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12 13" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="4 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 12 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 12" id="KW-0678">Repressor</keyword>
    <keyword evidence="11 12" id="KW-0742">SOS response</keyword>
    <keyword evidence="9 12" id="KW-0804">Transcription</keyword>
    <keyword evidence="7 12" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="LexA_DNA_bind" evidence="15">
        <location>
            <begin position="1"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S24" evidence="14">
        <location>
            <begin position="77"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="12">
        <location>
            <begin position="27"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="12">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="12">
        <location>
            <begin position="84"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU003991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD28249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="193" mass="21096" checksum="ABC3B655F34DD66F" modified="2013-07-24" version="1">MDRLTKSQQKVYDFLRQKTATGVPPTVREICAATGLKSTSTVHAHLKTLERLGYITREAGLNRSIRVEGETPAAQVPILGKVTAGMPILAVEDIEGYIPFPQKAGKELFALHVSGLSMRDAGILDGDYVVAEQAATADDGDIVVAMIDEEATVKRLYREKAGVRLQPENPDFQPIYSDHASILGKVIAVLRYY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAM8</accession>
    <name>R6YAM8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02129</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30970">
        <property type="protein sequence ID" value="CDD30970"/>
        <property type="gene ID" value="BN815_02129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425247" evidence="2">
        <location>
            <begin position="27"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="418" mass="45102" checksum="252D0C5576913514" modified="2013-07-24" version="1">MKKALSFLLAALLLAGCTAQPAPESAASPPPDSVAVESPSRPLATPSGEGAAQASQVVETTLSSGVVVQAEVSYPPVDFSSLASYQASLHRFDPQQARQLLLGDAPLAQEEQQAVKGSAFQDAMWHMYVTEDGQNLVVIEENLYYFNDGWNQDTTQYFYPGPESLDYNGDAFQTGKELAFATAEECFAQAKETLSQLGIAVADSYDCFTLDRETLQAEAEKVRERLVQNGLGLWTDEAGEPLSREESLAQYPLPQYQASQDCYYFQLYARAGACPVTRQSTGVAASGGYTAGAMIDCAYSAEGLVMLSIYPAYDVGEIEGEAPCLDLEGALEALDSKYNSLLLESPCQVEQIAFEYVPLGTGDGIHVTLTPAWRFLVKQELTFPGKEDASETVTMEQASYVFFNAATGQEIVTDLGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBI3</accession>
    <name>R6YBI3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Biotin carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00223</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31285">
        <property type="protein sequence ID" value="CDD31285"/>
        <property type="gene ID" value="BN815_00223"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021228">
        <property type="entry name" value="BrxD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10923">
        <property type="entry name" value="DUF2791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="49956" checksum="A7C2FC372FC37AAA" modified="2013-07-24" version="1">MNEENRKVPRRIAQTVLNSLKGGVVPRVGLPYITVGRKSEIEALLHDVDILEEGGASFRFIVGRYGSGKSFLIQTIRNYVMDRGFIVADADLSPERRLQGTRGQGLATYRELISNLSTKTKPEGGALTLVLDRWISGVQSQALQETGLEPGSPALTQAVDQKIVAVTSAVSELVHGFEFAKLLSLYYHAYVEGEEEKKQQVARWFRGEYATKREAKEELGVNILITDDNWYEYLKLFAVFFRLAGYAGMMIFIDELVNLYKIPNAITRQYNYEKLLTMYNDTLQGKARYLGIVMGATPQAIEDKRRGVYSYEALRSRLAEGKFSRPGARDLLAPVIRLEPLTPEEMLVLCEKLCAMHAGLYGYQRSLSTQELADFIKLEYGRIGADQNITPREVIRDFIELLDLLYQNPSLTLGELMESEAFTYAKSQAVSDETDANYVEFTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBK3</accession>
    <name>R6YBK3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00243</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31305">
        <property type="protein sequence ID" value="CDD31305"/>
        <property type="gene ID" value="BN815_00243"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022749">
        <property type="entry name" value="D12N6_MeTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003356">
        <property type="entry name" value="DNA_methylase_A-5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12161">
        <property type="entry name" value="HsdM_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02384">
        <property type="entry name" value="N6_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HsdM_N" evidence="2">
        <location>
            <begin position="21"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="domain" description="N6_Mtase" evidence="1">
        <location>
            <begin position="165"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="595" mass="67153" checksum="BF2467AF19A409F8" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBK7</accession>
    <name>R6YBK7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tex-like protein N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00248</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000395">
        <property type="protein sequence ID" value="CDD31310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31310">
        <property type="protein sequence ID" value="CDD31310"/>
        <property type="gene ID" value="BN815_00248"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05685">
        <property type="entry name" value="S1_Tex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3500.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041692">
        <property type="entry name" value="HHH_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044146">
        <property type="entry name" value="S1_Tex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023323">
        <property type="entry name" value="Tex-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018974">
        <property type="entry name" value="Tex-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032639">
        <property type="entry name" value="Tex_YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17674">
        <property type="entry name" value="HHH_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09371">
        <property type="entry name" value="Tex_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16921">
        <property type="entry name" value="Tex_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="553"/>
            <end position="622"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="617"/>
            <end position="640"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="640" mass="70023" checksum="49A52B4411284E65" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBQ8</accession>
    <name>R6YBQ8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Multidrug export protein MepA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00927</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. MepA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000102">
        <property type="protein sequence ID" value="CDD28709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28709">
        <property type="protein sequence ID" value="CDD28709"/>
        <property type="gene ID" value="BN815_00927"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13143">
        <property type="entry name" value="MATE_MepA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045070">
        <property type="entry name" value="MATE_MepA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="235"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="359"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="387"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="415"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD28709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="48038" checksum="5BCCCABFBAE61D5B" modified="2013-07-24" version="1">MEHSVFQEEKVSKAYIRLAFPVVFSMAVSLVYNLADTFFVAQTNDTNIVAGVSLSMPLFTTVMAVGNIFAQGGSSLISRLLGKRDGEGVKRVSSFCFYTALLIGVLMGILMLVFRVPLLYLLGADEDTFAHASDYFLYFAIGTPIIVLSFIHSNLLRTEGMSKESMIGNIIGSVVNIILDPIFISLLGWNAAGAAIATVIGNLCAVLYFLAVVLKRSRILSVSLRSWKIPPAYVGQILGIGIPAAIVNIMSSVSTVLINQFLLPYGNDKIAAMGIATKVSMIVLLVLTGLAFGGQPLFGYYFGAGDKERLSQLLKFCLRFISAVALALSALVFAFAPLLMRCFMSDETIVTQGALMLRWQVTSMVFVGIVLLMTIVFQSAGKVVGSFLLSIGRQGVIFLAVILIAYFTLGYRGVIVSQAVADFLTAIGACLLFYKQLYKDFRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YBX6</accession>
    <name>R6YBX6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MoxR-like ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00956</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000105">
        <property type="protein sequence ID" value="CDD28784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28784">
        <property type="protein sequence ID" value="CDD28784"/>
        <property type="gene ID" value="BN815_00956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011703">
        <property type="entry name" value="ATPase_AAA-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041628">
        <property type="entry name" value="ChlI/MoxR_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07726">
        <property type="entry name" value="AAA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17863">
        <property type="entry name" value="AAA_lid_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_3" evidence="1">
        <location>
            <begin position="36"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_lid_2" evidence="2">
        <location>
            <begin position="229"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="311" mass="34169" checksum="FF45C02EB15763DB" modified="2013-07-24" version="1">MLQPKALAVVNEVRKAILGKDAVVCKVLMAILARGHILLEDNPGVGKTTLALAFSKAMGLDYNRVQFTPEVMPADVVGFSVWDRATGNFSYRPGAVLCNLFLADEINRTSAKTQSALLEAMEEGQVTVDNISRPLPQPFTVIATQNPVGSAGTQLLPESQLDRFMMRLSIGYPSLDQEVLILKQTEGGRPVDSLRQVTTLEEVRQMQAETAQVHVAEDLYRYVATLCAATREHPLIRLGASPRAGAALIRACRASAWMAGRDYVIPGDVHLLYYNVLEHRVMPDPQARLSDRTIHDLLAEVMESVPQPKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC41</accession>
    <name>R6YC41_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GFO_IDH_MocA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00990</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000108">
        <property type="protein sequence ID" value="CDD28864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28864">
        <property type="protein sequence ID" value="CDD28864"/>
        <property type="gene ID" value="BN815_00990"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="3"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="316" mass="34955" checksum="5CC2AE3CEC959904" modified="2013-07-24" version="1">MIQFGIMGAGNIARKFADAVRQVEGAQVAAVASKSLERAQAFAQEQHIPAGYGSYQEMLQRPDIDAVYIATTNNFHYENILQCLEHGKHVLCEKSMVLHTRQAEEVFALAREKGLFLMECMWVRFLPKIQKVKEWVETGRIGKLKCAQGNLGFYAGKDLTTRAYNPALGGGSMYDLGVYLIEVLGYFATEPLAQVESTVVRAPTGVDETASFLLRYGDYLVDGQCSVGTALPENGGLYGEEGYIALRERLHTGGRVELYDKSGRLVEEYVQEDVNGFIYQVREAVRCIGAGLLESPTVPHSMTLECCRVFEQVLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCN0</accession>
    <name>R6YCN0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein translocase subunit SecE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">secE</name>
        <name evidence="8" type="ORF">BN815_00435</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the SecE/SEC61-gamma family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31655">
        <property type="protein sequence ID" value="CDD31655"/>
        <property type="gene ID" value="BN815_00435"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.1030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00422">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005807">
        <property type="entry name" value="SecE_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038379">
        <property type="entry name" value="SecE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001901">
        <property type="entry name" value="Translocase_SecE/Sec61-g"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33910">
        <property type="entry name" value="PTHR33910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00584">
        <property type="entry name" value="SecE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01650">
        <property type="entry name" value="SECETRNLCASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00964">
        <property type="entry name" value="secE_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0811">Translocation</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00422"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="78" mass="8752" checksum="516CA591E2E008F8" modified="2013-07-24" version="1">MAENVKKTENGFVRFVKRVTKFFRDCKGEVKKIVWPTPKATFKNTGVVLVTIIVAALFVFLLDTVFMNLLGLVMDVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6YCQ0</accession>
    <name>R6YCQ0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">3-oxoacyl-[acyl-carrier-protein] reductase</fullName>
            <ecNumber evidence="5">1.1.1.100</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00439</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a (3R)-hydroxyacyl-[ACP] + NADP(+) = a 3-oxoacyl-[ACP] + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:17397"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="EC" id="1.1.1.100"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.100" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000441">
        <property type="protein sequence ID" value="CDD31680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31680">
        <property type="protein sequence ID" value="CDD31680"/>
        <property type="gene ID" value="BN815_00439"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004316">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011284">
        <property type="entry name" value="3oxo_ACP_reduc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01830">
        <property type="entry name" value="3oxo_ACP_reduc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 5" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="155"/>
            <end position="159"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR611284-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU366074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="26134" checksum="1140406352DCBFEB" modified="2013-07-24" version="1">MKLEGKIALVTGASQGLGKAIALKLAENGADVAIIFVGPQEPALETKAEIEALGRRAECYPCDVRDEQAVEDTVAQVKKDLGKVDILVNNAGVTRDGLMVTMKDEDYDMVLDINLKGAFHMIRACYRDFMRKRSGKIINISSIAGLVGNVGQVNYAASKAGLIGLSKSVAKELGSRGVCCNCIAPGFIETDMTKDIKEDNPLLVQVPMKKMGTPEDVANVALFLASPESDYITGETIRVDGGLAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEU9</accession>
    <name>R6YEU9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Peptide chain release factor 3</fullName>
            <shortName evidence="6">RF-3</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">prfC</name>
        <name evidence="8" type="ORF">BN815_01281</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000181">
        <property type="protein sequence ID" value="CDD29879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29879">
        <property type="protein sequence ID" value="CDD29879"/>
        <property type="gene ID" value="BN815_01281"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006449">
        <property type="term" value="P:regulation of translational termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04169">
        <property type="entry name" value="RF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.3280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00072">
        <property type="entry name" value="Rel_fac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004548">
        <property type="entry name" value="PrfC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032090">
        <property type="entry name" value="RF3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038467">
        <property type="entry name" value="RF3_dom_3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041732">
        <property type="entry name" value="RF3_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43556">
        <property type="entry name" value="PTHR43556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16658">
        <property type="entry name" value="RF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00503">
        <property type="entry name" value="prfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="9"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="18"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="86"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="140"/>
            <end position="143"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="531" mass="60251" checksum="9D06EBA501EBBFE0" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFE5</accession>
    <name>R6YFE5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Amidohydro_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01355</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000189">
        <property type="protein sequence ID" value="CDD30034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30034">
        <property type="protein sequence ID" value="CDD30034"/>
        <property type="gene ID" value="BN815_01355"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="2"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="27249" checksum="3ACFFAD5841A744E" modified="2013-07-24" version="1">MDGSPQGRTAWVEQPYRGGEPGYRGYPVHQDGQVLAFLEQAQREGVQIAVHCNGDAAAEQLLRCYGQAFARYGRDIRPVMVHAQLLRPDQVPRLKPLGMVASFFVAHVYHWGDVHVANFGQERASQISPARTALDSGVVFDFHQDSPVIPPNMVESLWCAVCRRTKSGQVLGENQRLPVWEALRAVTSNAAYALFEEGQKGTLSPGKRADLVLLDRDPLSCPPEELRDIRVVETIKDGETVYKNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFW9</accession>
    <name>R6YFW9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Hydrolase TatD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30234">
        <property type="protein sequence ID" value="CDD30234"/>
        <property type="gene ID" value="BN815_01477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004536">
        <property type="term" value="F:deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018228">
        <property type="entry name" value="DNase_TatD-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015991">
        <property type="entry name" value="Hydrolase_TatD-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00010">
        <property type="entry name" value="TIGR00010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01091">
        <property type="entry name" value="TATD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28711" checksum="A83296E4BA289FD2" modified="2013-07-24" version="1">MRNIFDSHAHYDSEQFDSDREQLLGWVLPEQGLVGIVNMAADLQSCQTTLELTRRYDYICGAAGVHPEEARELPEDWLSQVRRYLQEPKMVAVGEIGLDYHWLDACPKERQQEVFAAQLELAQELALPVVVHDREAHGDTVEFLRKYRPRGVVHCFSGSWETAREILGLGMYIGLGGVVTFKNARHAVEVAQNIPLDRLLLETDAPYMAPVPHRGKRNDSSLIPLVAEKIGELRGLEAQAVLDITAENAARLFGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG80</accession>
    <name>R6YG80_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DJ-1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01591</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000231">
        <property type="protein sequence ID" value="CDD30364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30364">
        <property type="protein sequence ID" value="CDD30364"/>
        <property type="gene ID" value="BN815_01591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006287">
        <property type="entry name" value="DJ-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01383">
        <property type="entry name" value="not_thiJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="1">
        <location>
            <begin position="2"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="18815" checksum="85D73C026D3E1D4D" modified="2013-07-24" version="1">MVVVFLAEGFEEVEALAPVDVMRRAGLAVKLAGVTGREVTGSHGICVQTDMAAQEVDATLLEAMVLPGGLPGTHNLEASPAVQRCIDSCVAQGKLVAAICAAPSILAHKGLLAGKNATAFPSFQKDLQEGGALLSESYVVRDGQFLTARGMGVATQFGLALVEALVSPEKAADIRASIQWEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG99</accession>
    <name>R6YG99_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Germination protein Ger(X)C family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01610</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30389">
        <property type="protein sequence ID" value="CDD30389"/>
        <property type="gene ID" value="BN815_01610"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="198" mass="21345" checksum="40B3C2CE58CC8D5F" modified="2013-07-24" version="1">MKRLLSIVAVCLVLGWGLFGPRGLELHQRVLIQAIGIDKTATGYQVTLRAASTSQQAEERLYTCAGATLEQALESFSHATGREPLYSHTGLVVFGKTCAQAGLEEVLAPFYQGRPTVKLSLSSDSAKELLSAKQDSILAPVEEISALVETDLLTFYNDENRPGSQGTLPVLSVYEGQVARSGQAVFQDYRLLGIEKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGI7</accession>
    <name>R6YGI7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SpoIIIAH-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00695</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000054">
        <property type="protein sequence ID" value="CDD27676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27676">
        <property type="protein sequence ID" value="CDD27676"/>
        <property type="gene ID" value="BN815_00695"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.4300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024232">
        <property type="entry name" value="SpoIIIAH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038503">
        <property type="entry name" value="SpoIIIAH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12685">
        <property type="entry name" value="SpoIIIAH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425498" evidence="1">
        <location>
            <begin position="29"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="19182" checksum="336906493DE806B3" modified="2013-07-24" version="1">MKFGKKQLVLASLVLALGAAVYLNWQFAGTGRLPVGDSSSETSQLGAAQLVNNTYVETVNDGAESGEASGDALAQARMDRQNSRDQALELLDGVLENVDSDSAAKQQAVEEASAIAQNILAESNVESLLEAKGYTDCVAYITAQECSVVLAGAVEEADTLIVQEVVMEQTGLTADKIKIIGTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGK3</accession>
    <name>R6YGK3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PhoH family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00041</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27696">
        <property type="protein sequence ID" value="CDD27696"/>
        <property type="gene ID" value="BN815_00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoH" evidence="3">
        <location>
            <begin position="109"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="320" mass="35567" checksum="46EAF7718DB6D3DF" modified="2013-07-24" version="1">MEQKINLDRLEQAEALFGSFDENVRLIEKEFGVALVVRDSELKITGDDPEAVDKATRTVQSLLTLIGSGENLTEQNVRYCIRMVGEDSEDKVARLAGDVICITSKGKPIKPKTVGQRTYCDNIKDNTITIGVGPAGTGKTYLAVAMAVNAFRAQQVNRIILTRPAVEAGEKLGFLPGDLQQKVDPYLRPLYDALFDMLGAETYQRFVERGNIEVAPLAYMRGRTLDDSFIILDEAQNTTGEQMKMFLTRLGFNSKMVITGDVTQIDLPDGKRSGLKEAVRILKGVDDIAIFRFTEKDVVRHKLVQDIIRAYERASSRAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGU5</accession>
    <name>R6YGU5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01782</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000277">
        <property type="protein sequence ID" value="CDD30569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30569">
        <property type="protein sequence ID" value="CDD30569"/>
        <property type="gene ID" value="BN815_01782"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="111" mass="12551" checksum="46165C130AAF5B91" modified="2013-07-24" version="1">MTGVSATQSLAIFKAVLWSPYRRTLYFCSRPVTNRKLEWMRRIMVSLPAALANKMAESTTAYRWRVPSVRASWKKAAETAWIITATEATAAALSELALKENRAFRPLSTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGW1</accession>
    <name>R6YGW1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">GHL10 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01800</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000280">
        <property type="protein sequence ID" value="CDD30589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30589">
        <property type="protein sequence ID" value="CDD30589"/>
        <property type="gene ID" value="BN815_01800"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003790">
        <property type="entry name" value="GHL10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02638">
        <property type="entry name" value="GHL10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="GHL10" evidence="4">
        <location>
            <begin position="80"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="408" mass="44840" checksum="47BA37E0F2F3B07D" modified="2013-07-24" version="1">MGRFHLRKYCYLVLWAALLAAVAGVWFFGREPAPQESGPSPTPQASPAPAGEEEETLVGVWVPYFSLHTAEHTQQAFAENFQTIAQTAQEKGMNALFVHVRPFCDALYPSALYPWSHILTGTQGQDPGFDPLQFMIDTAHSLGLEFHAWLNPLRVKTAETPAALADNNPYTLLAGEYPQYFMEWEGGVYLNPAYPAVRAMIADGAAEIVENYDVDGIHFDDYFYPAQDASLDSAAYSAYTQSVEEPLSLLAWRTANSNAMVAQVYESIKAVDENAAFGISPQGNIQNDENMGADVATWAAVPGYVDYLAPQLYYSFENEALPYQQALEEWEALPRHPGLKLYAGLALYKAGTDADGGTWLSRDDIIALQAEAALQSGCQGVLLYSWEAFNSQQAAKELENAVALLGQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGX4</accession>
    <name>R6YGX4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000284">
        <property type="protein sequence ID" value="CDD30604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30604">
        <property type="protein sequence ID" value="CDD30604"/>
        <property type="gene ID" value="BN815_01815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="208"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="43481" checksum="3249B8D36F1AA9D2" modified="2013-07-24" version="1">MASFTPDLDQLHELYCQYGADLFALCYLQAGRPAQALDLMAASLCDVAASPKLWELAASGKEGFLRVGHLNCVDASLRRPKRPKRKKDTSGQEAPRAALPFSLTDPLREILKLRLPARTALFCRERLNLSWEAAAQLLGTSPARCQRLYGAALKQAKITAGQARANLETLSPGEDTLDAAWEEFLSQRGQAGFSTRQRYRRARRAMDVAMPFLALGVVAICVVAFLGVEHGWFGPSSVPVQGTAQESSSDDLPLEVGDVSVYVPEEGGFAEYIVHNTPYSPEDILRQMVYLGGAPAGTTLLSANLDSGGTESSDGSTVTYTLGDTLSLTLEFSQEAASLSGEEGERTLQAMAATFTAYTQGLDRLSFRCQGEELTVNGKTAQDFLDGQLTITRTVETDYRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHK4</accession>
    <name>R6YHK4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter ATP-binding/permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00182</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30879">
        <property type="protein sequence ID" value="CDD30879"/>
        <property type="gene ID" value="BN815_00182"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="261"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="27"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="344"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="377"/>
            <end position="384"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="583" mass="64272" checksum="0438F6B1B3859E2C" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHP5</accession>
    <name>R6YHP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cysteine desulfurase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000343">
        <property type="protein sequence ID" value="CDD30924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30924">
        <property type="protein sequence ID" value="CDD30924"/>
        <property type="gene ID" value="BN815_02086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="1">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="7961" checksum="2B18016B18B6425A" modified="2013-07-24" version="1">MSFSLPPFHPYDVAVLLDQQGVAVRSGTHCAHPLFDALGMPQGVVRASLGLYNTLEDVERLCRALQRVAAIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHT5</accession>
    <name>R6YHT5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Thiol reductant ABC exporter CydC subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02123</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000352">
        <property type="protein sequence ID" value="CDD30964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30964">
        <property type="protein sequence ID" value="CDD30964"/>
        <property type="gene ID" value="BN815_02123"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034775">
        <property type="term" value="P:glutathione transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014223">
        <property type="entry name" value="ABC_CydC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02868">
        <property type="entry name" value="CydC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="134"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="164"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="251"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="25"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="340"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="372"/>
            <end position="379"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="552" mass="59698" checksum="67230FF7E6A38228" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI04</accession>
    <name>R6YI04_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucose-1-phosphate adenylyltransferase GlgD subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02168</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000359">
        <property type="protein sequence ID" value="CDD31014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31014">
        <property type="protein sequence ID" value="CDD31014"/>
        <property type="gene ID" value="BN815_02168"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008878">
        <property type="term" value="F:glucose-1-phosphate adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005978">
        <property type="term" value="P:glycogen biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011831">
        <property type="entry name" value="ADP-Glc_PPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011832">
        <property type="entry name" value="GlgDAde_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43523">
        <property type="entry name" value="PTHR43523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43523:SF6">
        <property type="entry name" value="PTHR43523:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02092">
        <property type="entry name" value="glgD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="2">
        <location>
            <begin position="17"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD31014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="370" mass="41644" checksum="DA3556D984A61C44" modified="2013-07-24" version="1">MRGNDVIGILFAYVHEERVRELTQNRVMASVPYGGRYRLVDFPLSNMVNSGINKVGVITEQNYQSLMDHLGSGKAWDLSRKREGLYLLPPFGAETMRTEGKISSLASIMRFLKNSHEEYVLLSDCDTVANIDYKEVFALHTAKEADITIIYRHGTSPDTDKNVVYTVDPEGFIRDMVVKRGSDTDCNFGMGMCLIGRKRLMAMIEECMGRNLYDFDRDLLQRNLPELRVVGYEFTGAAYCISSLGSYFKANMALMEPKVRTQLFEPGRPVYTKVRDDMPTRYGLGSVVSNSIVADGCLIEGEVENCVLFRGVQVHNGAKLRNCVIMQDSIIGENSRLDFVVADKDTVFDPNRTLMGYQTYPVFVAKGSKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI97</accession>
    <name>R6YI97_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hsp20/alpha crystallin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00203</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31119">
        <property type="protein sequence ID" value="CDD31119"/>
        <property type="gene ID" value="BN815_00203"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="31"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="16634" checksum="FA66879CB6C3EE75" modified="2013-07-24" version="1">MLPAVFGENLFDEMCDDMMRPMRSMEKALYGKHARAIMKTDVRETDNSYEVDIDLPGFKKDEVNVQLEDGYLTVSAAKGLDKDEKKKGRYIRQERYAGQCSRSFYVGESVQPKDVHAKFEDGILKLSLPKAEKPKLPDHRTITIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIF4</accession>
    <name>R6YIF4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6440 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28331">
        <property type="protein sequence ID" value="CDD28331"/>
        <property type="gene ID" value="BN815_00822"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045515">
        <property type="entry name" value="DUF6440"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20037">
        <property type="entry name" value="DUF6440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6440" evidence="1">
        <location>
            <begin position="3"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="51" mass="5839" checksum="13E3EC8392DD99CA" modified="2013-07-24" version="1">MNRFQKIYQQGTIDVIEIWLDTETGVQYLFHKNGNAGGFTPLLDREGKPVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIH9</accession>
    <name>R6YIH9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Asparagine--tRNA ligase</fullName>
            <ecNumber evidence="6">6.1.1.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Asparaginyl-tRNA synthetase</fullName>
            <shortName evidence="6">AsnRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">asnS</name>
        <name evidence="8" type="ORF">BN815_02353</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + H(+) + L-asparaginyl-tRNA(Asn)</text>
            <dbReference type="Rhea" id="RHEA:11180"/>
            <dbReference type="Rhea" id="RHEA-COMP:9659"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58048"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.22"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.22" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31209">
        <property type="protein sequence ID" value="CDD31209"/>
        <property type="gene ID" value="BN815_02353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004816">
        <property type="term" value="F:asparagine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006421">
        <property type="term" value="P:asparaginyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00534">
        <property type="entry name" value="Asn_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004522">
        <property type="entry name" value="Asn-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00457">
        <property type="entry name" value="asnS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 6 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="7">
        <location>
            <begin position="131"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="463" mass="52544" checksum="761349BD96A35790" modified="2013-07-24" version="1">MKRQEVASFYKDLSSYAGKTVTVCGWARSIRDSKTLGFIDLNDGTSFKGVQIVFEDGKIDNFKEIASQNVGAALRVTGTLLATPEAKQPFEIHASEIVVEGASTPDYPLQKKRHTVEFLRTIPHLRARTNLFSAAFRIRSAAAYGIHKFFQENGFVYIHTPVITTTDCEGAEMFQVTTMDLDNLPKTEDGAVDYRQDFFQKQVFLSGSGQLQVETMAQAFSKVYTFGPTFRAERSNTPRHASEFWHIEPEIAFADLNDNMDVIEAAVKSVINYVLETCPQDMEFCNQFVDKGLLDRLRHVATSDFARVTYTDAVKILEEHNSEFEYKAAWGEDIQTEHERFLAEKHFGRPVFVTDYPKDIKSFYMRLNDDGKTVAATDLLVPGIGELVGASQREERYDVLKNRMLELGMSEEDLWWYLDLRRFGTTVHSGFGIGFDRLVMYLTGISNIRDVLPFPRTTGSAEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJ81</accession>
    <name>R6YJ81_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_00360</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31474">
        <property type="protein sequence ID" value="CDD31474"/>
        <property type="gene ID" value="BN815_00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="264"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="32"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="396"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="429"/>
            <end position="436"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="635" mass="70237" checksum="E2243C64D194581E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJC8</accession>
    <name>R6YJC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">Protein translocase subunit SecY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secY</name>
        <name evidence="13" type="ORF">BN815_00385</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 11">Membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 12">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31509">
        <property type="protein sequence ID" value="CDD31509"/>
        <property type="gene ID" value="BN815_00385"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01465">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026593">
        <property type="entry name" value="SecY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030659">
        <property type="entry name" value="SecY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="PTHR10906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="SSF103491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00967">
        <property type="entry name" value="3a0501s007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00755">
        <property type="entry name" value="SECY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00756">
        <property type="entry name" value="SECY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9 11" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 11" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="67"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="146"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="182"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="268"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="316"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="370"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="398"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD31509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="436" mass="48172" checksum="B4E38E3DAA6B54ED" modified="2013-07-24" version="1">MFNTIRNAWRIPDLRKKILYTLLIIIVFRFGSVIPAPFLDASALSELMASAGENSALGYINMLTGGAFSYASLFAMGITPYINSSIIMQLLTIAIPLLERMAKEGEEGRKKIATITRYVTVILGLIQGVAYYFYLRSQGIVEYTDGFAGVFVAFVIVLTFTAGTALIMWMGEQINDKGVGNGISIILFAGIVARLPVTFGTVWQYMQLGMESASTAGQYLVLAPLFVVLFLVVIWVIVFMNEAERRIPVQYAKKVVGRKMYGGQSTFLPVKVAMSGVMPVIFASAILSIPQFIQFFWNPSEGFGRALLDAFSSSGWLYVVLYFFLILMFAYFYMSIQYNPLEMANNLRQNNGTIPGIRPGKPTADFIAKILSKVTLIGALFLAFVALVPIIYTNVTGMYGLSMGGTSIIIIVGVALETVKQLESQMMLRHYKGFLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJD1</accession>
    <name>R6YJD1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase ParA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000099">
        <property type="protein sequence ID" value="CDD28666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28666">
        <property type="protein sequence ID" value="CDD28666"/>
        <property type="gene ID" value="BN815_00914"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="1">
        <location>
            <begin position="4"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="273" mass="29559" checksum="46BB05F87A33C84F" modified="2013-07-24" version="1">MNTQIIAVANQKGGVGKTTTCANLGIGLAQAGKKVLLVDADPQASLTISLGHPQPDKLPFTLSEAMGRILMDEPIKPGEGILHHPEGVDLMPADIQLSGMEVSLVNAMSRETILRQYLDTVKGQYSHILIDCQPSLGMLTVNALAAANRVIIPVQAEYLPAKGLEQLLQTVNKVKRQINPKLQIDGILLTMVDNRTNFTKEIAALLRETYGSKIKVFGTEIPHSVRAKEISAEGKSIFAHDPGGKVAEGYENLTKEVLKLEKQREKSRAGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YJX6</accession>
    <name>R6YJX6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferrous iron transport protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00984</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000107">
        <property type="protein sequence ID" value="CDD28846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28846">
        <property type="protein sequence ID" value="CDD28846"/>
        <property type="gene ID" value="BN815_00984"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Gate" evidence="2">
        <location>
            <begin position="10"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="15757" checksum="19AE19E6982C6745" modified="2013-07-24" version="1">MGNVTWAGESLLTHCARLLEPFARLFGLDGVILLAFLLALPANELVLPLLLMGYLSQGALVEVGELSALHGLLLENGWTWVTALCVLVFTLFHWPCSTTCWTIWRETKSLKWTALSMALPTGCGLLLCFLISSAARLLGWWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKK1</accession>
    <name>R6YKK1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000120">
        <property type="protein sequence ID" value="CDD29066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29066">
        <property type="protein sequence ID" value="CDD29066"/>
        <property type="gene ID" value="BN815_01044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="215"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="316" mass="36474" checksum="1E3C43FC0245511C" modified="2013-07-24" version="1">MLERIMADNGIPGPVAESGGCRVFQFHSDTGEGIMTQYDLFPGVYLMYNDFHMESYDSVFRTTEDMLCIDYCRQGRMEYPAGPDTYSYVEAGDLKLDRRLEHQGHFTFPLSHYHGITIGFTLPLAAQSLKEWVREFPVDLVRLQEKFCAGRHPRVIHGAPSVDRIFQELYAVPEQIKLPYFRIKVLELLLYLDALELDERTEKPYFYKSQVEKVKAAHRLLTEDLERHYTIAELSEHFSIPATALKECFKSVYGQPVNTYMRNLRMDRAALLLRQEPQTSVAEIAGRVGYDSASKFAAVFKEAKGKTPLEYRREGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YM75</accession>
    <name>R6YM75_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">UDP-glucose 4-epimerase</fullName>
            <ecNumber evidence="5 8">5.1.3.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01239</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>UDP-alpha-D-glucose = UDP-alpha-D-galactose</text>
            <dbReference type="Rhea" id="RHEA:22168"/>
            <dbReference type="ChEBI" id="CHEBI:58885"/>
            <dbReference type="ChEBI" id="CHEBI:66914"/>
            <dbReference type="EC" id="5.1.3.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 8">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Carbohydrate metabolism; galactose metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the NAD(P)-dependent epimerase/dehydratase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.2" evidence="5 8"/>
    <dbReference type="EMBL" id="CBGU010000170">
        <property type="protein sequence ID" value="CDD29711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29711">
        <property type="protein sequence ID" value="CDD29711"/>
        <property type="gene ID" value="BN815_01239"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00214"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003978">
        <property type="term" value="F:UDP-glucose 4-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006012">
        <property type="term" value="P:galactose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05247">
        <property type="entry name" value="UDP_G4E_1_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005886">
        <property type="entry name" value="UDP_G4E"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01179">
        <property type="entry name" value="galE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7 8" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="9">
        <location>
            <begin position="3"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00018569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU366046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD29711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="329" mass="36234" checksum="2CAC3278ABAE668F" modified="2013-07-24" version="1">MAVLVLGGAGYIGSHTAYELIDNGVDVVIADNLETGHKEAVHPKARFYQGDIRDRAFLDGLFEKEPIQGVIHFAANSLVGESMTNPLKYYDNNLCGTKVLLESMVAHGVDKIVFSSTAATYGEPENIPILEGDPTHPTNTYGETKLSMERMFHWVGQAHGLRYVSLRYFNACGAHKSGQIGEAHHPETHLIPLILQVPLGQREKVSIYGDDYDTRDGTCVRDYIHVTDLAQAHILAMEYLNKGGESNIFNLGNGVGFTVKEVIDTARKVTGHPIPAQTTPRRAGDPAQLVASSEKAKTILGWKPQYDDLETIIQSAWKWHESHPNGYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMU0</accession>
    <name>R6YMU0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">EDD domain protein DegV family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29916">
        <property type="protein sequence ID" value="CDD29916"/>
        <property type="gene ID" value="BN815_01302"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003797">
        <property type="entry name" value="DegV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043168">
        <property type="entry name" value="DegV_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02645">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00762">
        <property type="entry name" value="DegV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51482">
        <property type="entry name" value="DEGV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="290" mass="32152" checksum="8A5E9F84D24143CB" modified="2013-07-24" version="1">MGTYQIVTDSTADLTPELIRQLDVQVIPLCYMMGGRTYHNIPGGGEMTDREFYAKLRGGAMSTTTQINSEEFLRVFTPLLEAGQDVLYIAFSSGLSGTCQSAQLAREELQKRFPQRKMVVFDSLCASMGEGLLVYYAAKLRQEGKSLEEVLAWLQENVLRLCHWFTVDDLNHLKRGGRVSTATALVGTMLGIKPVLHVDNEGHLIPVSKVRGRKQSLDALVKRMEETAQEPAGQMVFISHGDCLEDARYVERQVREKLGVQQVEVGYIGPVIGAHSGPGTVALFFLGKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YMX0</accession>
    <name>R6YMX0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PHP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01316</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29941">
        <property type="protein sequence ID" value="CDD29941"/>
        <property type="gene ID" value="BN815_01316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="6"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="239" mass="25860" checksum="1E009E5A9383ACB0" modified="2013-07-24" version="1">MNTYHYDLHIHSCLSPCGDNDMTPNNLVQMALLSGCDVIALTDHNTCRNAPAAMEAGARNGLLVIPGMELCTAEEAHVVCLFETLEGALEFDHYIYENMPHVKNRPEIFGEQRLLDGEDGPVGEEENLLLVSSFVGVDQVVGLVAQYGGVAFPAHVDRDSFSVIASLGAIPAEAGFTAAEVTRDCDITSFAQLHPELGGLPIFRDSDSHYLETLAGDPWELPLPELSIQAVLDAVRGRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNP5</accession>
    <name>R6YNP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha-L-fucosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01479</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000209">
        <property type="protein sequence ID" value="CDD30236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30236">
        <property type="protein sequence ID" value="CDD30236"/>
        <property type="gene ID" value="BN815_01479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004560">
        <property type="term" value="F:alpha-L-fucosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004939">
        <property type="entry name" value="APC_su10/DOC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000933">
        <property type="entry name" value="Glyco_hydro_29"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10030">
        <property type="entry name" value="PTHR10030"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01120">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03256">
        <property type="entry name" value="ANAPC10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00812">
        <property type="entry name" value="Alpha_L_fucos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DOC" evidence="2">
        <location>
            <begin position="349"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="473" mass="54046" checksum="7543625091A1335E" modified="2013-07-24" version="1">MNYTELDRRLVQVVPSPRQFAYQQLEFYAFVHFTVNTFTGREWGDGTEDPAIFNPEKLDTRQWARAVKSAGMRGLILTCKHHDGFCLWPSRYTEHSVAHSPYQGGKGDIVRETAQACREEGLRFGVYLSPWDRNNPLYGQGKAYDDYFCAQLEELLTGYGDIFAVWFDGACGEGPNGKKQYYDWERYYALIRKLQPGACINVCGPDIRWCGNEAGDTRPSEWSVVPARTRDTEKIASLSQQADDESFRQRKISASDKDLGSREALREEQELIWYPAEVNTSIRPGWFYHPEEDNQVKSLDTLLDVYVRSVGGNGTFLLNIPPTAEGLFHENDVRRLEELGDALREAFRENLLEKAALSASSAQEGHGVENLRQDSYDSWFQTEEGVTHCVLEAAWEKPQVFRWVALKENILRSQRVERFTLEVRQGGQWKEAYQGTVVGYKKLIPLEGLKGDGLRVTIQDARVCPTLAFWGVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNV8</accession>
    <name>R6YNV8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30306">
        <property type="protein sequence ID" value="CDD30306"/>
        <property type="gene ID" value="BN815_01540"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032066">
        <property type="entry name" value="GP3_package"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16677">
        <property type="entry name" value="GP3_package"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11004" checksum="3CB2B27A3C5C339F" modified="2013-07-24" version="1">MLQYLESCEGQRLPTLPGLALALGFSSRGELERFAAAQGGRVSQLLEWAASWVEEETLQAACRKETASGARFILQTAFGYGERSAPDLGPITVQVEDGEGGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNY1</accession>
    <name>R6YNY1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01560</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30326">
        <property type="protein sequence ID" value="CDD30326"/>
        <property type="gene ID" value="BN815_01560"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="339" mass="35597" checksum="3AB317A0FB20B013" modified="2013-07-24" version="1">MVDRQVGEVVQLVVVLGDEVHVRLTAQHVVHNGSDLHTGDGVVGTEGAVAVAVNPAVLGGVHHSAVEPVGGLHVGEDVGAAGLALGELHGDGGELRPGDGALGLKVAVAHAGHNAQAGQSVHGLGVPGVGGNVVKGLGDGDVLVQQQVVEHLGHLGAGHVVLRAEGPFGIAEQVLDVVVGVQQVRHTAVVRVHRGDVGRVVGRVVVIAGVGRRRRRGSGVGRGSWSGLDRFITAVVLTGYLNNNWIRVKCPLYPVIRKSNFKVGVFFVDQLMGDIFALANLVRDIRAVCGCELFSVKRYCIGTICIFDKAIDVFQRGISQRGIFQQFVQCQSFIAMIFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YPX0</accession>
    <name>R6YPX0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Gamma-glutamyl phosphate reductase</fullName>
            <shortName evidence="7">GPR</shortName>
            <ecNumber evidence="7">1.2.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Glutamate-5-semialdehyde dehydrogenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Glutamyl-gamma-semialdehyde dehydrogenase</fullName>
            <shortName evidence="7">GSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">proA</name>
        <name evidence="9" type="ORF">BN815_01837</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19541"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the gamma-glutamyl phosphate reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.41" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000287">
        <property type="protein sequence ID" value="CDD30626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30626">
        <property type="protein sequence ID" value="CDD30626"/>
        <property type="gene ID" value="BN815_01837"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004350">
        <property type="term" value="F:glutamate-5-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07079">
        <property type="entry name" value="ALDH_F18-19_ProA-GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00412">
        <property type="entry name" value="ProA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020593">
        <property type="entry name" value="G-glutamylP_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000965">
        <property type="entry name" value="GPR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00407">
        <property type="entry name" value="proA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01223">
        <property type="entry name" value="PROA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0521">NADP</keyword>
    <keyword evidence="6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 7" id="KW-0641">Proline biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="12"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="355" mass="38102" checksum="2D629F6DF958C2C1" modified="2013-07-24" version="1">MSRALLDRLSLTEARIQDMAAAVEEVAKSADPVGKTLSGQRLPNGLQLEKVTVPLGVIGIIYEARPNVTSDAAALCLKAGNAVILRGGKEAFRSNQAVVKVLREALAEGGLPADCVQLVEDTSRQSAQELMALTEYLDVLIPRGGAGLIRSVKENARVPVIETGVGNCHVYVDKDADLNMAANIIYNAKCSRPSVCNAIETILVHQDVAEEALPLIQARLDEKQVELRGCEKAQAILPGIPPATEEDWATEYLDYILAVKVVASLEEALEHIARYSTGHSECIVTENYTAAQRFLNEVDAAAVYVNASTRFTDGGQFGLGAEIGISTQKLHARGPMGLEQLVSTKFLIRGSGQVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ85</accession>
    <name>R6YQ85_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Thiamine-phosphate synthase</fullName>
            <shortName evidence="8">TP synthase</shortName>
            <shortName evidence="8">TPS</shortName>
            <ecNumber evidence="8">2.5.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Thiamine-phosphate pyrophosphorylase</fullName>
            <shortName evidence="8">TMP pyrophosphorylase</shortName>
            <shortName evidence="8">TMP-PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">thiE</name>
        <name evidence="12" type="ORF">BN815_01965</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47848"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62890"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 8 9">
            <text>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 2 H(+) = CO2 + diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:47844"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8 9">
            <text>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + 4-methyl-5-(2-phosphooxyethyl)-thiazole + H(+) = diphosphate + thiamine phosphate</text>
            <dbReference type="Rhea" id="RHEA:22328"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37575"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58296"/>
            <dbReference type="EC" id="2.5.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 8 10">Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the thiamine-phosphate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.3" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30761">
        <property type="protein sequence ID" value="CDD30761"/>
        <property type="gene ID" value="BN815_01965"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00141"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004789">
        <property type="term" value="F:thiamine-phosphate diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00097">
        <property type="entry name" value="TMP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034291">
        <property type="entry name" value="TMP_synthase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00693">
        <property type="entry name" value="thiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8 9" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="5 8 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TMP-TENI" evidence="11">
        <location>
            <begin position="10"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="region of interest" description="HMP-PP binding" evidence="8">
        <location>
            <begin position="40"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="region of interest" description="THZ-P binding" evidence="8">
        <location>
            <begin position="137"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="THZ-P binding" evidence="8">
        <location>
            <begin position="187"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine</name>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="CDD30761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="22735" checksum="E0A22E70CB5FF218" modified="2013-07-24" version="1">MKFSSQNLLLYAVTDRAWVGRQTLLEQIESALKGGVTLVQLREKNLPEEQFLQEAKEAAALCHRYGVPLIVNDSVEVALQSGADGVHVGIEDQPVEAIRRRAGKGFLIGATAKTVAQAQAAQAAGADYLGVGAVFPSPTKKNAIRITVEQLGEICGSVSIPCVAIGGISRENLPALAGGGMDGFALVSAIFSQPDIEAACRELRALAERTVKEGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQA6</accession>
    <name>R6YQA6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sigma-70 region 4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01985</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30781">
        <property type="protein sequence ID" value="CDD30781"/>
        <property type="gene ID" value="BN815_01985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r4" evidence="2">
        <location>
            <begin position="61"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="149" mass="17060" checksum="3FD158E28105AE78" modified="2013-07-24" version="1">MGIQDKADALNHADRLERPIPGDDEGREQGETLPDEQAERELLNVDEKAEQAHFHNVLEQALGELSVVQGAVLRHRFTQQHTRQQTAEALHITAEAVRREEARALQFLRGKPSVLHLREEALETAAYHGTGWFSWYYEQGSVEERIVER</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQR6</accession>
    <name>R6YQR6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02073</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000341">
        <property type="protein sequence ID" value="CDD30911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30911">
        <property type="protein sequence ID" value="CDD30911"/>
        <property type="gene ID" value="BN815_02073"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="402"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="512" mass="57725" checksum="9A417BFB04FAA941" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQU4</accession>
    <name>R6YQU4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00192</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000346">
        <property type="protein sequence ID" value="CDD30936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30936">
        <property type="protein sequence ID" value="CDD30936"/>
        <property type="gene ID" value="BN815_00192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="50365" checksum="53058ACF5104DF41" modified="2013-07-24" version="1">MLAGGDMPDVFWALLSDAQVLQNESQLVAIEDLVDTFAPNCVATYDQLGVDWKEIATTPSGHIYGLLGRYESLYENTGDGIQIINQAWLDAVGKELPTTLDEYTEVLRAFKEQDPNGNGQADEIPYCFSEDMWCAYATNTMGWWGIGDGAGSDTTSSKSTRDGVVSGSVNTDEYRQYLEYHHMLYSEGLMDQEGFSQNTEMFSTKIKSGQVGTYFAWTALEYLSSEQEKDWVVLPPIQAIEGVDPIANGEVQRSTIQKQKWVVTNQCEYPEAAIRLWDYQARDVESALTVALSEKGVLWDEYEDGSGYYFVVPEDTTPEFTFEHMKYTYGVVNDGPLLTIADTPKNDGEISPAAALRDTMVDQVDEYFIPKEDQLPQTYVSTEAIDRRTFIETDLFAYIKQFRAQAIMNGFTDAEWDAYVERLDQLQYQEWLQWYQDMMDGTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRL0</accession>
    <name>R6YRL0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HlyD family secretion protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02375</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31231">
        <property type="protein sequence ID" value="CDD31231"/>
        <property type="gene ID" value="BN815_02375"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032681">
        <property type="entry name" value="HlyD_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12700">
        <property type="entry name" value="HlyD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="167"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="434" mass="47283" checksum="7085AA67AD8A1DBA" modified="2013-07-24" version="1">MNSKKIRTIGAVLLAVLVLVYVGYQGYLATHRSIQTETAMYGQVSDVLQAQSFIIRNEQVIDESANGVLSYRVADGTRVAQGGVIADVFSTEEDASAQRTIEQLDEEIANLQALSQPADYFVANPSMLADQIYSAMEDVALGVNQNSFSQLTTWKESLLSALTRRQLITGEESAENLSQRISQLESQRSSLESQAGDSIGTISAPKAGYFISSVDGLESAVDVEDVENLTVAQVEELLSQDATRDSSAVGKICQDFNWYVACVFDEDDMVHLEGVDSVYLDIPFASTEQIPAIVVARNYDKDSGDTAVVFQCSYMDSDIAAVRNEAVQVTVATYSGVLVNERALRFEDVEYTTTDEDGNTVTQVAENVRGVYVLYGGQLEFVQVFTDHSVNGYAICKTELSSEEQAALVTSSTIQLYDQVVVEGTDLYDGKVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRP5</accession>
    <name>R6YRP5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Primosomal protein N</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31261">
        <property type="protein sequence ID" value="CDD31261"/>
        <property type="gene ID" value="BN815_02405"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041236">
        <property type="entry name" value="PriA_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18074">
        <property type="entry name" value="PriA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase C-terminal" evidence="1">
        <location>
            <begin position="7"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="26016" checksum="612A1364C82213FE" modified="2013-07-24" version="1">MLRVDTDSVAAKYSLEKKLDQFARGEYDVMVGTQMVAKGLDFENVTLVGVLSADQALFSDDFRSNERTFDLLTQVVGRAGRGKYPGRAIIQTYAPENPVLHLAAQQDYFGFYRQEILFRQAMLYPPFVDILVIGFVGEKEPLVKQGANVFLHLLGSLAQQEYSGLPLRVLQPSPAAVARVSGKYRYKLLIKCRNSPRLREMVSRLLLQFASLREFQQVTAYADPNPYRIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRY2</accession>
    <name>R6YRY2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00271</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000403">
        <property type="protein sequence ID" value="CDD31336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31336">
        <property type="protein sequence ID" value="CDD31336"/>
        <property type="gene ID" value="BN815_00271"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038728">
        <property type="entry name" value="YkvI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37814">
        <property type="entry name" value="PTHR37814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425814" evidence="3">
        <location>
            <begin position="31"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="125"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="230"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="274"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="347"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="379"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="415" mass="45218" checksum="2232E288BC8A3DA2" modified="2013-07-24" version="1">MQKTKTKIPFAVLFSVGAVLFSAHAGGGFATGNQAHTYYVGLGWLGPISAVGAMLLLTLTMREAMLLYNSRGLTSYKDLFKTLYHPFDKLYVLFEVFFYIMVLMAVAAAISGAASALSEYFGLNYYAGIFLVGMLVLCLTIFGADLVRMASTYMGIAILVTAVAIYAVGIAWRGDLQQVLWQDFQTQGFGNVPQAILNCFTYAGFQCVTLPTMIACGTPLTTKKACSRSMWISFAMNAVALVLSIFMLLSWQGFYTSVEGGTVIPTLTVCREMGMGWLTVVYGVCLLLCLISTGVTTTFGFVARFEKLPLFRKITFAPARSAVVAAFIIVLSMTISLVGLSNIIKYGYGYCGYFAIAVVIVPFLTVGVYKNRKYLKEHPQAQGRSYEEAVQARQAAEPEEETTPAPAGQFEKEGC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6YS11</accession>
    <name>R6YS11_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Diaminopimelate epimerase</fullName>
            <shortName evidence="8">DAP epimerase</shortName>
            <ecNumber evidence="4 8">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapF</name>
        <name evidence="10" type="ORF">BN815_00293</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="4 8"/>
    <dbReference type="EMBL" id="CBGU010000413">
        <property type="protein sequence ID" value="CDD31361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31361">
        <property type="protein sequence ID" value="CDD31361"/>
        <property type="gene ID" value="BN815_00293"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31689">
        <property type="entry name" value="PTHR31689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="75"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="214"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="224"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="196"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="30085" checksum="E9D92D82F478E440" modified="2013-07-24" version="1">MGNLRFTKMHGCGNDYIYINCFEEQVEDPAALAVRLSDRHKGIGGDGVILICPSGVADAKMRMFNLDGSEGKMCGNGIRCVAKYVFDHRIAHKEELRIETLSGIKTCRVHAENGQAVSITVDMGDAILTPGEIPVALPGERVVGQNVEVAGGIYEITCVSMGNPHCVIFGEDPDGLDLPEIGPLFEHDPLFPQGVNTEFIQVLDSRTLKMRVWERGSGETMACGTGACASAVAAILCGRCKEGEDIVVKLRGGDLTIRVEGSRVWMTGEAVTVFEGTVNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6Z974</accession>
    <name>R6Z974_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">POTRA domain protein FtsQ-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000005">
        <property type="protein sequence ID" value="CDD27017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27017">
        <property type="protein sequence ID" value="CDD27017"/>
        <property type="gene ID" value="BN815_00488"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="204" mass="21198" checksum="8F4F79120035117D" modified="2013-07-24" version="1">MESVAAPEDGVLQVTGLTLTDPAPGAQLQAQDEDYQSAYDTIFAVLEQRGAAGDFVSLDLTDLYNITMNYQDRIQFQLGSTVELAYKINYGLDLVTGRENQEYIGSDVTGTLDLSLAGDTKQAYFTEEVLSSSSTSESGDTGADSSGGEDTSTGEDSTQPTGEGTGSTGEDSGSSSGEEGSSQEGGSTSQSNRGNDIPSDIFTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAT4</accession>
    <name>R6ZAT4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00657</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27567">
        <property type="protein sequence ID" value="CDD27567"/>
        <property type="gene ID" value="BN815_00657"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="58"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD27567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="259" mass="28344" checksum="37FC4D1C59C54B00" modified="2013-07-24" version="1">MKKLRAVTAGVVAAVLLVVIGGPFVYVLVLSFFAEGPAFSAEGYYRVFLGSQEYLLNFWRSLFLCAVIVAGQVVLSVFAGLGFAKYAFPGKNFWFFLLLVVMVLPLQVTLVPNFRILGALGLLDTQWALVLPAMFAPLGTFLMTQCFRSVPDEILEAAQLDGANMVRVLWKVLVPMSKNGMASVVLLSFLEAWNMVEQPVAYLKEPAQYPLSVAVAYVGTEDAATQLVCCLLSLLPPLLLFLRFHQELVQGIALAEVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB37</accession>
    <name>R6ZB37_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Stage III sporulation protein AC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00701</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000056">
        <property type="protein sequence ID" value="CDD27687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27687">
        <property type="protein sequence ID" value="CDD27687"/>
        <property type="gene ID" value="BN815_00701"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009570">
        <property type="entry name" value="Spore_III_AC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025664">
        <property type="entry name" value="Spore_III_AC/AD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06686">
        <property type="entry name" value="SpoIIIAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02848">
        <property type="entry name" value="spore_III_AC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="49" mass="5466" checksum="B32FB2A248795493" modified="2013-07-24" version="1">MAVLNQLLVRSGREEQAMMTTLAGLIVVLMMIIREIDALFQAVKSIFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZB82</accession>
    <name>R6ZB82_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyltransferase group 2 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00707</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000060">
        <property type="protein sequence ID" value="CDD27732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27732">
        <property type="protein sequence ID" value="CDD27732"/>
        <property type="gene ID" value="BN815_00707"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="7"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD27732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="322" mass="36594" checksum="02138CCC0F58D903" modified="2013-07-24" version="1">MEPTIYFVIPCYNEEAVLPETTRRLAEKLQAMQSAGLIGKDSRVLYVDDGSKDKTWQLISQFHQEYPWVEGVKLAHNRGHQNALLCGLMTAKDRCDAAISMDADLQDDTDALDQFVTKFREGCDVVYGVRNKRDTDTWFKRTTAEGFYKVMHLLGVDVVFNHADYRLMSQRALEALSEYREENLFLRGIVPLIGYRSDTVYYDRHERFAGESKYPLKKMISFALDGITSFSVKPLKLISNLGILISVLSIFGLLYALISYFAGVAVSGWTAIVCSIWLLGGLQMLCLGVVGGYIGKIYSEVKARPRYRVEEYLEQEKREKGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZEA2</accession>
    <name>R6ZEA2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4430 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00985</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000107">
        <property type="protein sequence ID" value="CDD28847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28847">
        <property type="protein sequence ID" value="CDD28847"/>
        <property type="gene ID" value="BN815_00985"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027954">
        <property type="entry name" value="DUF4430"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14478">
        <property type="entry name" value="DUF4430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438823" description="DUF4430 domain-containing protein" evidence="2">
        <location>
            <begin position="36"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4430" evidence="3">
        <location>
            <begin position="107"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD28847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="18473" checksum="830F59172C3B01EB" modified="2013-07-24" version="1">MKHTNLFRRGAALLLSLALLLTVLAGCGDASGSSASQESSTPASTSSQVEESSSQTETSSSSVESSQAVSESSLSSAEDAETKDITLKVVHGDGTEKEFPITTTAATLGDALVAEGLVEGEESSYGLFITTVDGETVDDANQEWWCLTKGGEMWNYGADATELSDGDTYELTFTVGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZFI5</accession>
    <name>R6ZFI5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000134">
        <property type="protein sequence ID" value="CDD29232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29232">
        <property type="protein sequence ID" value="CDD29232"/>
        <property type="gene ID" value="BN815_01100"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438491" evidence="1">
        <location>
            <begin position="31"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="208" mass="23097" checksum="BE12A25747F1BCB3" modified="2013-07-24" version="1">MKKENRWAALLLALACAGSLAACQEVQYSAKPVVYLYPEEETQVTVQLDYAGELTCTYPAYNDGWTVTASPDGTLTDGEGQTYSYLYWEGKDNVEYDFSQGACVAGEDTAAFLEDALSQLGLTRREANEFIVYWLPQMEENPYNLIAFQSDAYTEAAQLAITPTPDTVLRVFMAWKPLEEPVELPPQELAGPERSGFTVVEWGGCQVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGB0</accession>
    <name>R6ZGB0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000153">
        <property type="protein sequence ID" value="CDD29492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29492">
        <property type="protein sequence ID" value="CDD29492"/>
        <property type="gene ID" value="BN815_01170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="118" mass="12997" checksum="3E4BA8D07F113CA5" modified="2013-07-24" version="1">MERETLSNRLRTAYWSLVAVGCGLLLSVRPVLAETIWDRFSSIMQDIYGQVVAISTIVAVTVAAIALIVRMVSRNQRAVDEATSWLKRIVVTWIVLNTLGFIVAYLQPLIAGGQYTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIM5</accession>
    <name>R6ZIM5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage terminase large subunit PBSX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000217">
        <property type="protein sequence ID" value="CDD30307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30307">
        <property type="protein sequence ID" value="CDD30307"/>
        <property type="gene ID" value="BN815_01541"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006437">
        <property type="entry name" value="Phage_terminase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035412">
        <property type="entry name" value="Terminase_L_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04466">
        <property type="entry name" value="Terminase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01547">
        <property type="entry name" value="phage_term_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terminase_3" evidence="1">
        <location>
            <begin position="23"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="483" mass="54895" checksum="2CDEF988E6DB34E0" modified="2013-07-24" version="1">MNIIIPKKAFNSKFYPLLREDSHRYLLLYGGAGSGKSVFAVQRFLYRLLTLPLCNLLVVRAVAATNRDSTFALFRQVISRWGLSALFTCKESDLRITCANGNSVIFKGLDDTEKLKSITFPKGELTDIWVEEASEVREEDFNQLDVRLRGKGTHKQMVLTFNPVSVLHWLKRRFFDRQDPRALVVKSTYKDNRFLDEDYKATLESYKATDPYYYSVYCLGEWGVLGQTIFDAQKVTERLSQLAGPVKRGEFVFSTWYNSQSNEVLIDNSTIKWVDSPAGPIQIYQEPAPGEAYVIGADTAGEGSDFNVGQVVCHGSGRQVCTIRGQMDEDLFAKQLYCLGVTYNTALIATEANFSSYPIRELERLRYPRQYVRQAEDSFTHRPRQSYGFKTSSVTRPLVIAGLVEVAREHAEWLHDKDTLNEMLTFVRNENGRPEAQVGAHDDCVMSLAIAYYVRDRVPAAPQESTPFVSIERRETPWSPGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ78</accession>
    <name>R6ZJ78_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01713</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000266">
        <property type="protein sequence ID" value="CDD30497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30497">
        <property type="protein sequence ID" value="CDD30497"/>
        <property type="gene ID" value="BN815_01713"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046092">
        <property type="entry name" value="DUF6110"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19605">
        <property type="entry name" value="DUF6110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004438997" evidence="1">
        <location>
            <begin position="29"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="87" mass="9170" checksum="3D92FC06D6083E47" modified="2013-07-24" version="1">MMKHYVRLACFVGGALFGSVGVKLLASKDAKKAYTHIAAAGLRMKDSVMETVTSVQENAADILASAKDINEARAAKEAEAQVDGQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJC8</accession>
    <name>R6ZJC8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HMA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000275">
        <property type="protein sequence ID" value="CDD30552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30552">
        <property type="protein sequence ID" value="CDD30552"/>
        <property type="gene ID" value="BN815_01765"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="73" mass="8110" checksum="F7BC7411E4352A33" modified="2013-07-24" version="1">MKKTYKLTDLDCANCAAKMENAIKKIDGVSDASVSFLTQKLTVEADDSRFDDILKQIVKACKKVEPDCVINLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJG5</accession>
    <name>R6ZJG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mate efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01803</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000282">
        <property type="protein sequence ID" value="CDD30592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30592">
        <property type="protein sequence ID" value="CDD30592"/>
        <property type="gene ID" value="BN815_01803"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="298"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="333"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="371"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="403"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="432"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="467" mass="50702" checksum="4B6768468FF8D11A" modified="2013-07-24" version="1">MSFRKKFIGTRAFYASVLALLVPMIVQQGITQFVNLLDNVMVGRLGTAPMSGVAIVNQIVFIFNLTIFGGLSGASIFGAQFYGKGDHQGLRYTLRFRLVFSLVVTALGILVFLLFGEQLFSLYLNEGASSPEEIAATLGHAKEYIAIMLFGLLPFAINQCFSSTLRDVGETFSPMVASLIAICVNLVGNYLLIYGSFGFPKMGVAGAALATIIARWVEMAYLLLRTYRHRRRFPFLQGLFRDFRVPLSLVKQIAITGTPLLLNETLWSIGTAAVNMCYSSRGLEAVAATNINSTVWNLFAIVMAAMGNAIGILSGQLLGANDIPGAKDTVRKLLFFSVCVNAVIGVIIVAVSPFIPYIYNTEPSVRQTATHLLMVSGSFLPLSAYTQGTYFTIRSGGKTFVTFLFDCVFTWVVSLPIAFCLCQFTGLSVVWVFFFVSAADIIKAVIGTVMLVSGVWAKNMVGASTGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJN9</accession>
    <name>R6ZJN9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01874</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000298">
        <property type="protein sequence ID" value="CDD30667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30667">
        <property type="protein sequence ID" value="CDD30667"/>
        <property type="gene ID" value="BN815_01874"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="307"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="334"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="372"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="431" mass="49010" checksum="33EB641E627F272C" modified="2013-07-24" version="1">METLSTINFLMAAVFAACYCYQVVFAVARLLKKRRRFTAQKLCRYAVLIAARNESAVIAQLLESIRGQNYPQDLVHIYVVADNCTDNTAQIAAACGARVFQRQNKLQVGKGFALRFLLQKIQEEYPQERYDGYFVFDADNLLDPRYITEMNKVFSSGNRVVTSYRNTKNYGDNWITAGYGLWFLRESEYLNRPRDYLGTSCAVSGTGFLFAHSLLEELGGWDYFLLTEDLEFTADLVCRGEKIAYCHDAVIYDEQPSSFAQSIRQRSRWQRGYLQVVAKHGGNMVKTMLCDGSFACFDMLMCTIPAVVLSVISLLLNGVMFVVGVTIARKQLDIFFASVIMSAVNSYLVMLLMGLLPLVTEWRRIRCSRRKKIGYLFTFPFFVFTFGIAMVLAVFGNIEWKPIKHSVALSIGDMGSVSPQELRKIRKGRKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJX3</accession>
    <name>R6ZJX3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC superfamily ATP binding cassette transporter ABC/membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_01956</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000313">
        <property type="protein sequence ID" value="CDD30752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30752">
        <property type="protein sequence ID" value="CDD30752"/>
        <property type="gene ID" value="BN815_01956"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="73"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="266"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="9">
        <location>
            <begin position="34"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="353"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="386"/>
            <end position="393"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD30752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="590" mass="65345" checksum="66AA56CE0FB7C8EE" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL32</accession>
    <name>R6ZL32_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Site-specific recombinase phage integrase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02301</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31157">
        <property type="protein sequence ID" value="CDD31157"/>
        <property type="gene ID" value="BN815_02301"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13495">
        <property type="entry name" value="Phage_int_SAM_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="6">
        <location>
            <begin position="7"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="5">
        <location>
            <begin position="134"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="304"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="39413" checksum="6E3F13A7FC6928A3" modified="2013-07-24" version="1">MPFSIRDELSPVVQQYAMYLRNVRGLSSKTVTEYCKDLRTFFRFVKRDRGLVPPETPFEEIAVQDADLEFIRSVTTYEIYAFMNYVADDRNNMASTRQRKTTTLRSFFGYLTAHEKLLEKDPTETLVAPKKGKSLPHFLSLEQSIELLNAVEGPNAERDRCILTLFLNCGMRLSELVAIDLTDVLRNNNTLRILGKGNKERIVYLNQACQEAISRYLAVRPKDGVVDRNALFLSNRGTRIKPITVEVMVKKYLEKIGLSGPGYSVHKLRHTAATLMYRYGNVDIRVLQDILGHTNLGTTEIYTHTSSSQMEQAVKANPLAKVTERRKKPKPEPGTGTSTPAGGEDTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZL41</accession>
    <name>R6ZL41_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_02311</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31167">
        <property type="protein sequence ID" value="CDD31167"/>
        <property type="gene ID" value="BN815_02311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="339"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="377" mass="42515" checksum="955C354CEAC03D48" modified="2013-07-24" version="1">MIYRDFQDVKLSALGMGAMRLPVVDGDDSKIDEAAAFAMVDEAMARGVNYYDTAWGYHNGNSELVMGKALARHPREKFYLATKFPGYDLSNMGKMEEIFEKQLEKCQVEYFDFYLFHNVCEMNIDAYLDPKYGTYDYLLAQKKNGRIRHLGFSAHGDYDVMKRFLEAYGKDMEFCQIQLNYLDWDFQDAKRKVELLNQWNIPVWVMEPLRGGKLASLAPEDEAKLKALRPDEGIPAWAFRYLQSIPSVVVTLSGMSNMEQMKENIATFETDKPLNETELETLHAIAQGMVKKIVLPCTACHYCTSHCPQGLDIPNLLSLYNEHCFTQGGFIAPMALSAIPADKQPSACIGCRSCEAVCPQGIKISEAMADFIAKLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM17</accession>
    <name>R6ZM17_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">50S ribosomal protein L2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplB</name>
        <name evidence="8" type="ORF">BN815_00368</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="function">
        <text evidence="5">One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL2 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31492">
        <property type="protein sequence ID" value="CDD31492"/>
        <property type="gene ID" value="BN815_00368"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01320_B">
        <property type="entry name" value="Ribosomal_L2_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022666">
        <property type="entry name" value="Rbsml_prot_L2_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002171">
        <property type="entry name" value="Ribosomal_L2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005880">
        <property type="entry name" value="Ribosomal_L2_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022669">
        <property type="entry name" value="Ribosomal_L2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022671">
        <property type="entry name" value="Ribosomal_L2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014726">
        <property type="entry name" value="Ribosomal_L2_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13691">
        <property type="entry name" value="PTHR13691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00181">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03947">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002158">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01383">
        <property type="entry name" value="Ribosomal_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01382">
        <property type="entry name" value="Ribosomal_L2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01171">
        <property type="entry name" value="rplB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00467">
        <property type="entry name" value="RIBOSOMAL_L2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 5 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_L2_C" evidence="7">
        <location>
            <begin position="124"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="208"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="6">
        <location>
            <begin position="256"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025469"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD31492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="277" mass="30273" checksum="02F9CE2B29D55ACF" modified="2013-07-24" version="1">MAIKTYKPTTAARRNMSVTDYTSLSKNGPEKSLLAPLDKKAGRNSYGRITVRHRGGGNRKKYRIIDFKRQKHDVEATVLGIEYDPNRSAFIALVQYEDGEKRYILAPHGLKAGDKVVSGAGADIKPGNALPLKNIPVGTFIHNVELYPGKGAQLARAAGIMAQLMAKENGMALLRLPSGELRNVPESCMASIGQVSNIDHENVKIGKAGRKRHMGWRPTVRGSVMNPNDHPHGGGEGKSPVGRPGPVTPWGKPALGYKTRKKKNRSDKFIVKRRNGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMK4</accession>
    <name>R6ZMK4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3 12">2.3.1.179</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ORF">BN815_00440</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 12">
            <text>(9Z)-hexadecenoyl-[ACP] + H(+) + malonyl-[ACP] = 3-oxo-(11Z)-octadecenoyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:55040"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10800"/>
            <dbReference type="Rhea" id="RHEA-COMP:14074"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:83989"/>
            <dbReference type="ChEBI" id="CHEBI:138538"/>
            <dbReference type="EC" id="2.3.1.179"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>a fatty acyl-[ACP] + H(+) + malonyl-[ACP] = a 3-oxoacyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:22836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 12 14">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <comment type="caution">
        <text evidence="16">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3 12"/>
    <dbReference type="EMBL" id="CBGU010000441">
        <property type="protein sequence ID" value="CDD31682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31682">
        <property type="protein sequence ID" value="CDD31682"/>
        <property type="gene ID" value="BN815_00440"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000447">
        <property type="entry name" value="KAS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03150">
        <property type="entry name" value="fabF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 12" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 12" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5 12" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="15">
        <location>
            <begin position="4"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="active site" evidence="13">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR000447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR000447-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="CDD31682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="410" mass="43171" checksum="2BB8679F41E04B87" modified="2013-07-24" version="1">MRRVVVTGLGCVTPVGNDVPTFWESLKAGKCGIGPITHFDTTEHKAKVAAEVKDFDPLQYMEKSDLRKFDVFCQYAMAAATQAVEESGIKGTLPPERIGTYFGSGIGGMHTFAEEQKTLMEKGPRRVSPFFVPGMIINMAGGLIAIKYNFQGASIPIVTACATGNNAIGEAYRAIKHGYLDAVLTGGAEAAIIPIGVAGFSNMKALSTQEDPSIACTPFDARRSGFVMGEGAGALMLEEYEHAVARGAKIYGELCGYGVTCDAYHITAPQPDGLGGAAALKMALEEAGGCEDYSKLYINAHGTSTPLNDACETKAIKTALGEEAARQCMVSSTKSMTGHMLGAAGAVEAIACVLAVKEGIVPPTIGYEQPDPECDLDYVPNQAREAQVDLALSASLGFGGHNAYLAFRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUE5</accession>
    <name>R6XUE5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00024</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000035">
        <property type="protein sequence ID" value="CDD27353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27353">
        <property type="protein sequence ID" value="CDD27353"/>
        <property type="gene ID" value="BN815_00024"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013780">
        <property type="entry name" value="Glyco_hydro_b"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="45" mass="5245" checksum="159135F0DB323F42" modified="2013-07-24" version="1">MVLNYLKEPQEIVLQEPMVDLDTRCDVEGPVVLGSYETKVYRVKF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6XUL3</accession>
    <name>R6XUL3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00623</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000038">
        <property type="protein sequence ID" value="CDD27418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27418">
        <property type="protein sequence ID" value="CDD27418"/>
        <property type="gene ID" value="BN815_00623"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="265" mass="28891" checksum="EF06088E05AFEFCE" modified="2013-07-24" version="1">MLEDGSTSGTMVFDGIPTGESQVILTLYEYPTGIADAYGAATPMKNRVTAEFTFDLDQSAVYPSQNYLAQGREKLDVLTSAQLDRIPAGENGYICQIPDNSGGTVEITLFTQDLDYRGVTLYWYNGDQIMSMYPSVPSSSHNKFDEIYPYYQGDYYTYGEVGLDPAYTNGKTYKALYFRLENTGSMNLTSSATRFALIDNNTGEVLVEDVMRSALGNFDQIFGTSLEEQLYGAAEGEGTASEVLSTPSPSPLPEESVADASSDIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6XWW3</accession>
    <name>R6XWW3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Putative ABC transport system ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00792</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000083">
        <property type="protein sequence ID" value="CDD28238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28238">
        <property type="protein sequence ID" value="CDD28238"/>
        <property type="gene ID" value="BN815_00792"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="4">
        <location>
            <begin position="3"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD28238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="32547" checksum="58552905F2BB0345" modified="2013-07-24" version="1">MSIVIENLSKSYGPVRALQNVSCTWEPGKLYGLLGRNGAGKSTLLSAVTQRLFPDGGSVTVDGEPIGDNDRALSKMYLMSEKLYYPETMRVKDAFRWSQAFYPNFDREFAWNLAGAFQLNTSAKVSKLSTGYSSIFKIVVVLSTNAPYVLLDEPVLGLDANHRDLFYKTLLARYAERPFTAVISTHLIEEISHLIEDVVILHHGQVLAQGPREELLAGGYTVSGPKGLVEEYIRGKRLLGVDTLGGLLSAHLQGHPDRAALPQGLELSPLDLQKLFVLMTSDPEQVAAGSPRTGGGEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6XXU8</accession>
    <name>R6XXU8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ribosomal RNA small subunit methyltransferase G</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00872</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000094">
        <property type="protein sequence ID" value="CDD28548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28548">
        <property type="protein sequence ID" value="CDD28548"/>
        <property type="gene ID" value="BN815_00872"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008649">
        <property type="term" value="F:rRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003682">
        <property type="entry name" value="rRNA_ssu_MeTfrase_G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31760">
        <property type="entry name" value="PTHR31760"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02527">
        <property type="entry name" value="GidB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="88" mass="9465" checksum="C06C5A62B6913D3C" modified="2013-07-24" version="1">MATLPVLAEYCMPLIKMKGYFIAMKGPGAEQELEAAGNALDILGSGEPEVLSLTLPGGEERSLVICQKLRFTPKGYPRHGGTILKHPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZB4</accession>
    <name>R6XZB4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01049</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000121">
        <property type="protein sequence ID" value="CDD29073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29073">
        <property type="protein sequence ID" value="CDD29073"/>
        <property type="gene ID" value="BN815_01049"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="124" mass="13557" checksum="800FE6FBDAF49F9C" modified="2013-07-24" version="1">MKYCPYCGAEILSGAFSFCPSCGESLPVLAQPAAEKAPGKPSPQREKAKKERPRKKERPPRKAKQRILSEVEALDCDGYYEDVQPIDADRQREGVDTRLILRVVLLVAGVALVIGGCVAALFLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0V1</accession>
    <name>R6Y0V1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Deoxyribose-phosphate aldolase</fullName>
            <shortName evidence="3">DERA</shortName>
            <ecNumber evidence="3">4.1.2.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">2-deoxy-D-ribose 5-phosphate aldolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Phosphodeoxyriboaldolase</fullName>
            <shortName evidence="3">Deoxyriboaldolase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">deoC</name>
        <name evidence="4" type="ORF">BN815_00639</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 3">
            <text>2-deoxy-D-ribose 5-phosphate = acetaldehyde + D-glyceraldehyde 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:12821"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="ChEBI" id="CHEBI:62877"/>
            <dbReference type="EC" id="4.1.2.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="4.1.2.4" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27465">
        <property type="protein sequence ID" value="CDD27465"/>
        <property type="gene ID" value="BN815_00639"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00002">
        <property type="reaction ID" value="UER00468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004139">
        <property type="term" value="F:deoxyribose-phosphate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016052">
        <property type="term" value="P:carbohydrate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009264">
        <property type="term" value="P:deoxyribonucleotide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046386">
        <property type="term" value="P:deoxyribose phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00959">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00114">
        <property type="entry name" value="DeoC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011343">
        <property type="entry name" value="DeoC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002915">
        <property type="entry name" value="DeoC/FbaB/LacD_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028581">
        <property type="entry name" value="DeoC_typeI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889">
        <property type="entry name" value="PTHR10889"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10889:SF1">
        <property type="entry name" value="PTHR10889:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01791">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001357">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01133">
        <property type="entry name" value="DeoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00126">
        <property type="entry name" value="deoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with acetaldehyde" evidence="3">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="3">
        <location>
            <position position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="218" mass="23127" checksum="868BD69B1EBC28A4" modified="2013-07-24" version="1">MEWKEILSHVDHTLLKPEATWEDIRQVVEEGIHYGCASVCIPPAYVQRAAEYAAGRVAICTVIGFPNGYNAAPIKAAEATHAVLSGAAEIDMVVNLGWVKDGLFDQVLAEIQAVKAACQGRVLKVIIETCLLTQEEKRRLCQVVSDAGADYIKTSTGFSTGGATAQDVALLRQHTAPQVKVKAAGGIATKEGAEAFLALGADRLGTSRLVKLAKEAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y0Z1</accession>
    <name>R6Y0Z1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01241</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000171">
        <property type="protein sequence ID" value="CDD29713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29713">
        <property type="protein sequence ID" value="CDD29713"/>
        <property type="gene ID" value="BN815_01241"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="103" mass="11306" checksum="71FA1BA657174796" modified="2013-07-24" version="1">MSWKNWVLNPELISIVLGLGAMALPVVCMARRGKPGPWAAGSFFLTTLAVTFQLFLLARFVEQDMATVEDTANARFLAAMVLLVCTAVLNLAAFLLARRRAHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1G2</accession>
    <name>R6Y1G2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000052">
        <property type="protein sequence ID" value="CDD27650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27650">
        <property type="protein sequence ID" value="CDD27650"/>
        <property type="gene ID" value="BN815_00685"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="60" mass="7238" checksum="F426FF5482E67F7A" modified="2013-07-24" version="1">MPLFTTKPTDQFFERFMKHQPNFKPDAPEADRIQVELDAEKERKETHAMILQRNYDSKNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y1V6</accession>
    <name>R6Y1V6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative dipicolinic acid synthetase A subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000188">
        <property type="protein sequence ID" value="CDD30018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30018">
        <property type="protein sequence ID" value="CDD30018"/>
        <property type="gene ID" value="BN815_01344"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031629">
        <property type="entry name" value="DpaA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16924">
        <property type="entry name" value="DpaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DpaA_N" evidence="1">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="30066" checksum="66EEE1DCFCB47409" modified="2013-07-24" version="1">MAVFGVLGGDRRQLYLARSLEEDGHTLFLHGLEGLEGAAAFPTLPLEELGRRCPVVVLPLPAVREGGFLNAPFAQAPIPLDDSFAAALAPCQVLGGMVGKLRQTSPLWETIPLEDYYQREELTVGNAFLTAEGALALAVEHAPGALGGSRCLVAGFGRIGKALCLDLRALGAQVDCAARKPRDLAAIRAMGCGALTYGQVGGPYDVIFNTVPAPVIGDEILACQGPDTLLLELASAPGGICRGAAQARGLRFLDCPSLPGRFSPKASGELVKEAVYHILEERRKLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2E5</accession>
    <name>R6Y2E5_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zf-trcl domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30228">
        <property type="protein sequence ID" value="CDD30228"/>
        <property type="gene ID" value="BN815_01471"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026363">
        <property type="entry name" value="CxxC-x17-CxxC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025306">
        <property type="entry name" value="Zn-bnd_dom_prob"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13451">
        <property type="entry name" value="zf-trcl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04272">
        <property type="entry name" value="cxxc_cxxc_Mbark"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-trcl" evidence="1">
        <location>
            <begin position="3"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13451"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="93" mass="10747" checksum="269B9F4DFE574601" modified="2013-07-24" version="1">MYEDKTLICKDCGKEFVFTAGEQEFYAEKGFQNQPQRCRPCRQARKGAAAPQREMYTGVCAACGKEARVPFQPRDDRLVYCSQCYAQMKAEWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y2K3</accession>
    <name>R6Y2K3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heat-inducible transcription repressor HrcA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00740</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000075">
        <property type="protein sequence ID" value="CDD28015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28015">
        <property type="protein sequence ID" value="CDD28015"/>
        <property type="gene ID" value="BN815_00740"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002571">
        <property type="entry name" value="HrcA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021153">
        <property type="entry name" value="HrcA_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34824">
        <property type="entry name" value="PTHR34824"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01628">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HrcA" evidence="1">
        <location>
            <begin position="1"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="220" mass="24220" checksum="1339023396457C5F" modified="2013-07-24" version="1">MATTPSGDTAQVRAVQFVQTSRRTAMLILMSSAGTMKTRVFHCDFDLTNDILRVFFRVFNGKLAGKNVSDITPAFLQGVGVSLGEMYVLMGAPLRALLEVARDTMGTEVLLAGQMNLLFYPELEHGGARRVMDFLERREDVANLLRQKPGQVSFLIGREMGRPELDKSALGVARYQVDGHDAGALAVLGPVRMDYPRVASVLQYMAGQVGQHLTVLMRDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y390</accession>
    <name>R6Y390_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00817</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28320">
        <property type="protein sequence ID" value="CDD28320"/>
        <property type="gene ID" value="BN815_00817"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013493">
        <property type="entry name" value="CHP02677"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09660">
        <property type="entry name" value="DUF2397"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02677">
        <property type="entry name" value="TIGR02677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="496" mass="57546" checksum="2E06308FCE49511F" modified="2013-07-24" version="1">MALQADLLESIPQTRYLSADSYVSYRAIMRTFYLEYQKMRYQLDKDALLALLQQDPLFAGYTAEQLIPDLDQLVKWKNLTPIQDPHKAYTIADFKNRQFQYMMTEAALEVERMTITLENLYTHSTGLSSSAFRRIQGALRAAEQLEKMSLKEVGEWWGELQEDFRRLRQNHQDYLREFYGPSAEKQMKSAEFLVYKQHLIRYLEDFVQDLQSSAAQIGALLESFSEEQVHRILTLVHKSALEVPRPHGDPGPFWQQELWQQEQGVWNSLMEWFTGKDSTARQVMDVTNEVIRRVVQNAAILVQMQNMGVSNKAELRHLMTLFAGVPSMEDAHRLSALVFGSQQCRHFIRNAERETERIDLSTYEEPPLDYALQPRLRTYKPRMDRSGFADKSAEKAAQRKKILEEERRLREKTLHYVHEGRLDFSALKEPVPPEVRSVFLSWVAMANLAPDGSGITQYGQRFFLEKRGEGTCQLVCTDGTLSMPDCVLVFKENGYV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3H4</accession>
    <name>R6Y3H4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Lactaldehyde reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00844</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000087">
        <property type="protein sequence ID" value="CDD28410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28410">
        <property type="protein sequence ID" value="CDD28410"/>
        <property type="gene ID" value="BN815_00844"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013460">
        <property type="entry name" value="Lactal_redase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02638">
        <property type="entry name" value="lactal_redase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00913">
        <property type="entry name" value="ADH_IRON_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00060">
        <property type="entry name" value="ADH_IRON_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="2">
        <location>
            <begin position="10"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="382" mass="40420" checksum="3F5BC1DFEC1C84D4" modified="2013-07-24" version="1">MANRFILNERSYHGKGAIQEIAGEVTSRGLKKALLCTDPDLLKFGVTKKVTDVLDAAGLAYQVYSEIKPNPTIENVKDGVEAAKAAQADYIIAIGGGSSMDTAKAIGIIVTNPEFADVRSLEGTADTKNPCLPIIAVPTTAGTAAEVTINYVITDVEKNRKFVCVDPHDIPVVAIVDPDMMASMPKGLTAATGMDALTHAIEGYITKGAWELSDMFHLKAIEIIAKSLRGAVENTPEGREGMALGQYIAGMGFSNVGLGIVHSMAHGLSALYDTPHGVACAIILPTGLEYNKPVAGKRYRAIGKAMQVPGIDNMTDEEAADATIAAVKQLSLDVGIPQNLKGILKEEDVAFLSQSAYADACCPGNPRDTSEEEIAQLYKSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y3U3</accession>
    <name>R6Y3U3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000092">
        <property type="protein sequence ID" value="CDD28505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28505">
        <property type="protein sequence ID" value="CDD28505"/>
        <property type="gene ID" value="BN815_00858"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023204">
        <property type="entry name" value="SP1917_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014580">
        <property type="entry name" value="UCP033199"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09966">
        <property type="entry name" value="DUF2200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF033199">
        <property type="entry name" value="UCP033199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13233" checksum="C113503E2D04FDC8" modified="2013-07-24" version="1">MTNEKVFQMKLKKIYPLLVAKAEKKGRTRSEVDQVTCWLTGYSQEELNPLVESGITYGDFFRNAPAPNPNRKLITGSICGVKVETIEDPLMQEIRYLDKLVDELAKGKAMEKVLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4C6</accession>
    <name>R6Y4C6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00167</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30818">
        <property type="protein sequence ID" value="CDD30818"/>
        <property type="gene ID" value="BN815_00167"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="228" mass="24587" checksum="A8A87D6A6CB09F37" modified="2013-07-24" version="1">MIAWEPVRWPPGYLAVRCSCWPGGSSPGNPASGGGLPCGPACCFWGPLCSGWCWGTIPRALPRTRIPLNLGRTSPTPWGSSRFTTRTSFWITPRATSMCWCFWRSSGCCWACPWRARATPCSSSCPPSWRTCSAPGWCCTWPRTSWGSGRRCSWRGRTCSARRCTSTPPSGARRTPSARPLCCARCCCSTGSATCPRRCSLGCPSPASPRCWCSPLYICSSPSSSGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4D1</accession>
    <name>R6Y4D1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Histidine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Histidyl-tRNA synthetase</fullName>
            <shortName evidence="9">HisRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hisS</name>
        <name evidence="11" type="ORF">BN815_02010</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-histidine + tRNA(His) = AMP + diphosphate + H(+) + L-histidyl-tRNA(His)</text>
            <dbReference type="Rhea" id="RHEA:17313"/>
            <dbReference type="Rhea" id="RHEA-COMP:9665"/>
            <dbReference type="Rhea" id="RHEA-COMP:9689"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78527"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.21"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="3 9">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.21" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000324">
        <property type="protein sequence ID" value="CDD30823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30823">
        <property type="protein sequence ID" value="CDD30823"/>
        <property type="gene ID" value="BN815_02010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004821">
        <property type="term" value="F:histidine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006427">
        <property type="term" value="P:histidyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00773">
        <property type="entry name" value="HisRS-like_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00859">
        <property type="entry name" value="HisRS_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00127">
        <property type="entry name" value="His_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015807">
        <property type="entry name" value="His-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041715">
        <property type="entry name" value="HisRS-like_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004516">
        <property type="entry name" value="HisRS/HisZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033656">
        <property type="entry name" value="HisRS_anticodon"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43707">
        <property type="entry name" value="PTHR43707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13393">
        <property type="entry name" value="tRNA-synt_His"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001549">
        <property type="entry name" value="His-tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00442">
        <property type="entry name" value="hisS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="10">
        <location>
            <begin position="23"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD30823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="434" mass="48404" checksum="6198A053E226BF71" modified="2013-07-24" version="1">MELITKAPKGTVDIVPGKSEKWQVVEDVFRSEAELNGFGEVRTPVFEHTELFQRGVGDTTDVVEKQMYTFEDKGGRSITLRPEGTAGAVRAMLENGLYNAGYPVKLYYLTSCYRYEKPQAGRLRELHQFGVEMFGAAEPVADAQIIAMALSAFKRLGLEDVGLQLNSIGCPECRKEYHKALKEYFTARKEQLCDTCLSRLERNPMRILDCKSPECQEVCKGAPKITDYLCEDCKAHFAKVQEFLTALGIEFEIDPGLVRGLDYYTRTVFEFPSKSLGFALGGGGRYDGLVEEFGGKPTPGLGFGLGLDRIMMALEAQQVEFPQLSKCEMYIATMGEEAQKKAFLLLDELHRCGIPADTDLCGRGLKAQMKYADKIGAKFTMVLGDNELQQGKAEMKNMKTGEKRKISISGEDFINDYVTVSTEAEDFSQDGIFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4D6</accession>
    <name>R6Y4D6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02015</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000327">
        <property type="protein sequence ID" value="CDD30828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30828">
        <property type="protein sequence ID" value="CDD30828"/>
        <property type="gene ID" value="BN815_02015"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="77" mass="9078" checksum="F914C6281F266F02" modified="2013-07-24" version="1">MQTKTPYIPTRERATAVPLGNFDVMEDGNTLVNRLYYAVPRFENGRFQCSVFYEENIFRKEPNGDLMLVHSNFREEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4J6</accession>
    <name>R6Y4J6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Asparaginase</fullName>
            <ecNumber evidence="2">3.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00176</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparaginase 1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.1" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000335">
        <property type="protein sequence ID" value="CDD30873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30873">
        <property type="protein sequence ID" value="CDD30873"/>
        <property type="gene ID" value="BN815_00176"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08963">
        <property type="entry name" value="L-asparaginase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006033">
        <property type="entry name" value="AsnA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020827">
        <property type="entry name" value="Asparaginase/glutaminase_AS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027475">
        <property type="entry name" value="Asparaginase/glutaminase_AS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041725">
        <property type="entry name" value="L-asparaginase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="SSF53774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00519">
        <property type="entry name" value="asnASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00144">
        <property type="entry name" value="ASN_GLN_ASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00917">
        <property type="entry name" value="ASN_GLN_ASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparaginase" evidence="7">
        <location>
            <begin position="4"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase_C" evidence="8">
        <location>
            <begin position="202"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="85"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" description="O-isoaspartyl threonine intermediate" evidence="3">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="325" mass="35920" checksum="17597826585AEF03" modified="2013-07-24" version="1">MKHLLLIATGGTIASRHTAEGLAPQLTPAELLSYVPDAASFCSIDTVQPINLDSTNIRPEHWLLLANLIEEHYSRYDGFVICHGTDTLAYTASALSYLIQRTAKPIVLTGAQRSIDEDTTDAKVNLLDALRFACSGGSGVCIVFGSHVIAGTRARKSRTKSYNAFTSLNFPDLASVHESRVVRYIPYEPQGEPVFYHKLNTRVFLLKLTPGMDPAAFSAAGQLCDGLIIESYGMGGIPDVYLEELDKLIRQGKTVIMATQVPQEGSDLSVYQVGKHVKDRYHLLETYDMTLESTVTKLMWAMGQSSEPQEIRKLFCTTVNYDMLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4L1</accession>
    <name>R6Y4L1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PSP1 C-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28805">
        <property type="protein sequence ID" value="CDD28805"/>
        <property type="gene ID" value="BN815_00961"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007557">
        <property type="entry name" value="PSP1_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04468">
        <property type="entry name" value="PSP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51411">
        <property type="entry name" value="PSP1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PSP1 C-terminal" evidence="1">
        <location>
            <begin position="61"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="289" mass="32243" checksum="876ADCDAE576AB4C" modified="2013-07-24" version="1">MAEVIGVRFKNTGKVYYFDPQGIQVEKGSMAIVETARGLECGEVALQNREVADESIVQPLRRLIRLATPEDLKKVAENHIKEKKAFRACEKKIAERGLEMKLVDVEYTFDNSKILFYFTADGRVDFRELVKDLAGMFRTRIELRQIGVRDEAKMLGGMGICGRPFCCGSFLGGFTPVSIKMAKEQGLSLNPVKISGACGRLMCCLKYEQEAYQDLLRTTPKVGALVSTPEGKGTVTEQNLLTRKLTIRLDKDPDGAPKVFKVSEVKVLRDGKIKVGKKELEELKQLEGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4S3</accession>
    <name>R6Y4S3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02095</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000345">
        <property type="protein sequence ID" value="CDD30933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30933">
        <property type="protein sequence ID" value="CDD30933"/>
        <property type="gene ID" value="BN815_02095"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="174"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="32663" checksum="FBE1589056FAF450" modified="2013-07-24" version="1">MRLHRHAHYEVVFVLEGEFVQHLENGEFRYRAGDVVFLNRNVRHSEGYESDCVLVFVNLSPQLVEDLFFSTAHQLRPGAPQCSRGPIFQFLQENSRETGTDFRREYLDFFAMGGQGQAAAVLDAMAQELTVASTGYGFRIQGLLLELFAVLEDPGRYSLERIRVDARSEEFLYTRVARYLEAHHGRATREELGQVFHYNGDYLNRVVKKFSGLTISQLGQRLYLAEAKRLLRETDWGISEIISRLGFVNRTYFYRVFQEDTGMTPKEYRARERRAGGFAHHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4T9</accession>
    <name>R6Y4T9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC transporter solute-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000349">
        <property type="protein sequence ID" value="CDD30948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30948">
        <property type="protein sequence ID" value="CDD30948"/>
        <property type="gene ID" value="BN815_02107"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="483"/>
            <end position="502"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="516" mass="56659" checksum="5490D69B46AE8C1E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4W2</accession>
    <name>R6Y4W2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28910">
        <property type="protein sequence ID" value="CDD28910"/>
        <property type="gene ID" value="BN815_00995"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="116" mass="13124" checksum="35B632699AE78456" modified="2013-07-24" version="1">MLTKEELPECPVATTVQLVGSKWKLLILRNLLARPWRFNELRKDLEGISQKVLTDSLRSLEEDGIVQRKVYPQVPPRVEYSLTPLGESMRPILAAMEQWGSAYKASLEQGEASTQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y4X8</accession>
    <name>R6Y4X8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative N6-adenine-specific DNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01005</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000109">
        <property type="protein sequence ID" value="CDD28930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28930">
        <property type="protein sequence ID" value="CDD28930"/>
        <property type="gene ID" value="BN815_01005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="7872" checksum="7466C53E0CCD3FC4" modified="2013-07-24" version="1">MGAYISTFPIGFAGLIPAALQKLLPGAQVVLLSARKREAEAAAQEMGFPLRQRYDTLVNGKKAAVYLLEVGPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y543</accession>
    <name>R6Y543_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase E</fullName>
            <ecNumber evidence="6">2.1.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_02192</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>S-adenosyl-L-methionine + uridine(1498) in 16S rRNA = H(+) + N(3)-methyluridine(1498) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42920"/>
            <dbReference type="Rhea" id="RHEA-COMP:10283"/>
            <dbReference type="Rhea" id="RHEA-COMP:10284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74502"/>
            <dbReference type="EC" id="2.1.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the RNA methyltransferase RsmE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.193" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000364">
        <property type="protein sequence ID" value="CDD31038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31038">
        <property type="protein sequence ID" value="CDD31038"/>
        <property type="gene ID" value="BN815_02192"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006700">
        <property type="entry name" value="rRNA_ssu_MeTrfase-E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30027">
        <property type="entry name" value="PTHR30027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04452">
        <property type="entry name" value="Methyltrans_RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015601">
        <property type="entry name" value="MTase_slr0722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00046">
        <property type="entry name" value="TIGR00046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR015601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="247" mass="26599" checksum="C88FDBF328AF989A" modified="2013-07-24" version="1">MPRFFVDQPLEGQVFLGGEDGRHLAKSLRVRPGEEVTLCDGRGADALCKVLSIQGEGALLQVEKTSPSQGEPQTKVTVCQCLCKGDKLETVTQKAVELGAVEIWPLESARCVVKVDGKSAPKKVARLQKIAREAAMQSGRGVIPQVLAPASLKQALEEAARQGEILFFYERGEESLRQALRAAGERLFVFVGPEGGFAPEEAALAQSLGARLLTLGPRILRTETAPLAALSAIFYEKGDMERRGEAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y572</accession>
    <name>R6Y572_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ORF">BN815_02231</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000373">
        <property type="protein sequence ID" value="CDD31078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31078">
        <property type="protein sequence ID" value="CDD31078"/>
        <property type="gene ID" value="BN815_02231"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="154"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="175"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="237"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="455" mass="49845" checksum="C13199DD89AE6442" modified="2013-07-24" version="1">MKKLSIQTRLVLFHTAAMTLVVALVLGLLFSLSSQEILTSAQATLEERVSQGVEEVEYTQDRLEFDSELLSLENGVYLSVYQPGDSSMLYGRLPYGFAYTLPLSDGELRTVTAGGTEYSVLDLQFPVEGYGTLVMRGVVSLTAAERDFRATLRLALVLLPLLVALTALCGYLFSRRALRPVAQITQTVQNIQQERDLSKRVRLGEGRDEIYTLAQTFDSLLDQVEASFRREKQFTSDVAHELRTPLSVALMQCEELLAREDMPPEARQQVEVIRRKVDAMAGMVSQLLLLSRADQGREKLALEELDLSELSELVAQEFAELAGEKGIALAADIQPGVAITGDQTLLLRLWGNLLQNAVTYGKAGGHIWMKLSAGEGVATLQVRDDGVGIAPDQLPKIWERFYQVDPARSGESSGLGLSMVRWIVQAHGGTIQAESALGEGSTFTARLPLGGPEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5I5</accession>
    <name>R6Y5I5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01067</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000125">
        <property type="protein sequence ID" value="CDD29135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29135">
        <property type="protein sequence ID" value="CDD29135"/>
        <property type="gene ID" value="BN815_01067"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425087" evidence="2">
        <location>
            <begin position="25"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="261"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="265"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="281" mass="31172" checksum="54D734E03039B368" modified="2013-07-24" version="1">MEKMRTHPSKKKAILLAAGCLVLAAAVAAVWLFNRPQPGKLYHFQPGEVTQVYLQHYADMRDVTDPAQVEEIVDLLNGFTYHSAEDIPPASGWDYRVGLSTNTWAYDFTFTADSLRIWNRDGSSTIYSGPAGYLQPLVDMADGAIPVASGTISQPEGYPYHIELEDVTQLYVTDLAETKEITNQEDIQQVVELLNNFPYQSIEEDTYVPTDWWSFSLNGPNGAFFGGYFTTDSVRLSGNIYHGPEDYFQPVMDIMEAAPSLPEHTPEVSSPSALDSASPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5J0</accession>
    <name>R6Y5J0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02352</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31208">
        <property type="protein sequence ID" value="CDD31208"/>
        <property type="gene ID" value="BN815_02352"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025868">
        <property type="entry name" value="Zn_ribbon_dom_put"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12674">
        <property type="entry name" value="Zn_ribbon_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="147" mass="16914" checksum="D8B1A3BB1A0FF19D" modified="2013-07-24" version="1">MEAKDVLRSLRKERGLSQEELAEKIFVTRQAVSRWETGETLPTPETLQLLSALYDVSINTLLGSPRKLVCQCCGMPLEDSVLSREPDGSLNEEYCKWCYTEGKFAYSSLEELLDFLEGTMSNESWTPEQVRTYLQGYLPQLKHWKEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y5L4</accession>
    <name>R6Y5L4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA mismatch repair protein MutL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02377</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31233">
        <property type="protein sequence ID" value="CDD31233"/>
        <property type="gene ID" value="BN815_02377"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032300">
        <property type="term" value="C:mismatch repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038973">
        <property type="entry name" value="MutL/Mlh/Pms"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014790">
        <property type="entry name" value="MutL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042120">
        <property type="entry name" value="MutL_C_dimsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042121">
        <property type="entry name" value="MutL_C_regsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037198">
        <property type="entry name" value="MutL_C_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073">
        <property type="entry name" value="PTHR10073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08676">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00853">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118116">
        <property type="entry name" value="SSF118116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MutL_C" evidence="1">
        <location>
            <begin position="15"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="199" mass="22613" checksum="EAB3D7E5C1A80F72" modified="2013-07-24" version="1">MERPQPLRKEFHSRVIGEAFGTYLLVEYSADELMFIDKHAAHERLLYERLKRENAGGEAQTLLEPVTVTLDKEEYTAALDHLEDFSKAGFEVEDFGSGTVLVRSAPLLLDGGDAAEAVMEIAGYLASLKNRMTTEHLDWVYHNVACRAAMKAGDSITREEMVSLAQELEQNPDVRYCPHGRPVYIILRRRDIERQFGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7B6</accession>
    <name>R6Y7B6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Adenylosuccinate synthetase</fullName>
            <shortName evidence="7">AMPSase</shortName>
            <shortName evidence="7">AdSS</shortName>
            <ecNumber evidence="7">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">purA</name>
        <name evidence="8" type="ORF">BN815_01269</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>GTP + IMP + L-aspartate = GDP + 2 H(+) + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="7">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="7"/>
    <dbReference type="EMBL" id="CBGU010000175">
        <property type="protein sequence ID" value="CDD29800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29800">
        <property type="protein sequence ID" value="CDD29800"/>
        <property type="gene ID" value="BN815_01269"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="PTHR11846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00184">
        <property type="entry name" value="purA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="IMP binding" evidence="7">
        <location>
            <begin position="12"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="IMP binding" evidence="7">
        <location>
            <begin position="37"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="302"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="11"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="12"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="39"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="334"/>
            <end position="336"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="415"/>
            <end position="417"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD29800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="426" mass="46420" checksum="175ED9E2DFE21531" modified="2013-07-24" version="1">MVKAIVGACWGDEGKGKITDVLAEDSDIVVRFQGGSNAGHTIINEYGKFALHQLPSGVFRQNITNIIGNGVALSVENFLKEVQSVVERGVPAPKLLVSDRCQVVMPYHKELDGMEEARLAAKSFGSTKSGIAPFYSDKYAKIGFQVSDLFDDKDSIMERIDHVLGLKNVLYTELYHQKPLDREEIYEKLMEYKEALAPYVADTTTLLHNAVKEGKTVLLEGQLGSLKDPDLGIYPMVTSSSPLAGYGSVGAGGIPPYAIQEIVTVVKAYSSAVGAGEFVSEIFGDEAEELRRRGGDGGEYGATTGRPRRMGWLDLVAARYGCMVQGATAVAFTVLDALGYLDEIPVCVGYELDGKRIDTFPPTSQLKRCKPILEVLPGWKCDIGGIKKYEDLPENARKYVEFAEKGIGVPITMVSNGPARDDIIYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y7P9</accession>
    <name>R6Y7P9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">NgoMIV restriction enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00591</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27324">
        <property type="protein sequence ID" value="CDD27324"/>
        <property type="gene ID" value="BN815_00591"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009036">
        <property type="term" value="F:type II site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10010">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015105">
        <property type="entry name" value="NgoMIV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037083">
        <property type="entry name" value="NgoMIV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09015">
        <property type="entry name" value="NgoMIV_restric"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="291" mass="32140" checksum="F85A48FFAFB04087" modified="2013-07-24" version="1">MEALIANARFHFHKQLFETNTLTLTSAGVASNADTSSRGSKAIARRIVDILVDEQHHAVSTVDKISGQTLGKQFETLTMDFLRETFPNLQNLRPGRWTILQLGNNNKLKTSDFAQYEHLAYLNELTAQNAQLAAALGNDYLVAPDVVIYRDLYEDSEINAAQCIVDGDVSKMADIRKANGGKPLLHASVSAKYTMRSDRAQNSRTEALNLIRNRKGHLPHIVVVTAEPMPNRLASLALGTGDIDCVYHFALYELIRAVKEVGSEDAVETLETLVQGKRLKDISDLPLDLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8R3</accession>
    <name>R6Y8R3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01554</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000219">
        <property type="protein sequence ID" value="CDD30320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30320">
        <property type="protein sequence ID" value="CDD30320"/>
        <property type="gene ID" value="BN815_01554"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="59" mass="7066" checksum="0E85187DD1945C03" modified="2013-07-24" version="1">MVRRKKLINNSDIPQHQIEAIARCIMPDILAFYESEEGQREFAEWKKQREMEKQGSKTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9V0</accession>
    <name>R6Y9V0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01890</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000306">
        <property type="protein sequence ID" value="CDD30685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30685">
        <property type="protein sequence ID" value="CDD30685"/>
        <property type="gene ID" value="BN815_01890"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="30" mass="3457" checksum="C78829B6F41C9242" modified="2013-07-24" version="1">MSDFELLSIVLMILAIIVTLMVELFKSMKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y9X1</accession>
    <name>R6Y9X1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="9" type="ORF">BN815_01910</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="MEROPS" id="M41.021"/>
    <dbReference type="EnsemblBacteria" id="CDD30705">
        <property type="protein sequence ID" value="CDD30705"/>
        <property type="gene ID" value="BN815_01910"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="204"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="620"/>
            <end position="652"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="435"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="212"/>
            <end position="219"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="434"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="438"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="510"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="652" mass="71913" checksum="5C14F2D9D60CBBC8" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA29</accession>
    <name>R6YA29_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cupin_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01974</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000319">
        <property type="protein sequence ID" value="CDD30770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30770">
        <property type="protein sequence ID" value="CDD30770"/>
        <property type="gene ID" value="BN815_01974"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="50"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="145" mass="15973" checksum="25DD7EC745439BD1" modified="2013-07-24" version="1">MKVQDKTAFDEQNIFGQGMANTAFAQYFIGNSYLNPLTKPGESIVGLANVTFEPSCRNNWHIHHAKTGGGQILICTAGEGWYQEEGKDAVSLTPGTVIVIPPEVKHWHGAKADSWFSHIAVEVPGEETSNEWLEAVDDESYSKLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA93</accession>
    <name>R6YA93_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">GTPase HflX</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">GTP-binding protein HflX</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hflX</name>
        <name evidence="9" type="ORF">BN815_02032</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer. Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">May associate with membranes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000333">
        <property type="protein sequence ID" value="CDD30845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30845">
        <property type="protein sequence ID" value="CDD30845"/>
        <property type="gene ID" value="BN815_02032"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01878">
        <property type="entry name" value="HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11060">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00900">
        <property type="entry name" value="GTPase_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030394">
        <property type="entry name" value="G_HFLX_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032305">
        <property type="entry name" value="GTP-bd_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016496">
        <property type="entry name" value="GTPase_HflX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025121">
        <property type="entry name" value="GTPase_HflX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042108">
        <property type="entry name" value="GTPase_HflX_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10229">
        <property type="entry name" value="PTHR10229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16360">
        <property type="entry name" value="GTP-bdg_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13167">
        <property type="entry name" value="GTP-bdg_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006809">
        <property type="entry name" value="GTP-binding_hflX_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03156">
        <property type="entry name" value="GTP_HflX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51705">
        <property type="entry name" value="G_HFLX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hflx-type G" evidence="8">
        <location>
            <begin position="198"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="204"/>
            <end position="211"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="229"/>
            <end position="233"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="251"/>
            <end position="254"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="317"/>
            <end position="320"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="338"/>
            <end position="340"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR006809-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="414" mass="45217" checksum="594AF49AEEE8AD07" modified="2013-07-24" version="1">MYENETRPQRALLVSLDTGEYNAEVSLGELEELAHTAGAEPVLTLTQKRPAPDTATCIGSGMVEQAAQLCQQEEIDLLIFDRELTPTQIRNLEKACGVQVIDRTTLILDIFAQRARSKEGKLQVELAQLKYLLPRLGGQGTSLSRLGGGIGTRGPGETKLETDRRHIRRRISSLKEQLRDVEAARGLINRRREKDGTVTVALVGYTNAGKSTLMNQLTQAGVLAEDKLFATLDPTARALKLPCGKTVMLIDTVGLIRRLPHHLVEAFKSTLEQAATADILLNVCDASSGEARDHLEVTNTLLNELGAAGHPIIPVLNKWDAVEDPELAPRLPGAVRISALHGDGIPELLKAIEDSLPEKTFPVELLLPFSKTGLAAKLREEGAVTSEEYVPEGLRVSAQVDQRLYALVKEFEIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAG5</accession>
    <name>R6YAG5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bacterial regulatory proteins tetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02077</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30915">
        <property type="protein sequence ID" value="CDD30915"/>
        <property type="gene ID" value="BN815_02077"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="1">
        <location>
            <begin position="16"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="182" mass="20920" checksum="00D685E3ADDCB1B2" modified="2013-07-24" version="1">MPVDMKAMIAGTYLQLVQHGNVDKITVKALIDACHISRQTFYYHFRDIMDVLEWSIQRETARLVEETLQVEGMGQALKLFISFAVERFPLLRRLLDSQKRVQLEAIMLDAVERYLSEVAKQRPRDVPLSYGDREVLLRFTACGLVGVLLEYGRKPNMDQDLLAAQLERILSGELLGWRSPDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAH2</accession>
    <name>R6YAH2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dihydrodipicolinate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_02082</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000342">
        <property type="protein sequence ID" value="CDD30920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30920">
        <property type="protein sequence ID" value="CDD30920"/>
        <property type="gene ID" value="BN815_02082"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0704">Schiff base</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="298" mass="32749" checksum="4528150A41049AFF" modified="2013-07-24" version="1">MNAKWITPAVTAMDSQGHVDMEANKAIYDFLIEKGMDGLLLLGSIGEFFAISTPEKKRLIREALAHIHYRTTVYVGTCEMNLEACVELSNYALEQGADGAMVISPYYFSLPDSAILNFYDTLAQRVQGPVLLYNFPERTGYDLRPDLVLELATRHPNIVGIKDTVPIMGHTRALIQKVKAARPEFLVFSGFDEFFGHNVLSGGDGCIAGLSNFAPEVAAGYAQRARQDDLPGMAQYQRKVDSLMAIYDVAPQFVPTIKQAMALRGLGLEPFCAPPVLPSTSEETQQVRALLQQAGLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB41</accession>
    <name>R6YB41_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="8">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="8">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="8">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="8">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="8" type="primary">folD</name>
        <name evidence="11" type="ORF">BN815_02263</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>5,10-methenyltetrahydrofolate + H2O = (6S)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="8">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="8"/>
    <dbReference type="EC" id="3.5.4.9" evidence="8"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31110">
        <property type="protein sequence ID" value="CDD31110"/>
        <property type="gene ID" value="BN815_02263"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01080">
        <property type="entry name" value="NAD_bind_m-THF_DH_Cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020867">
        <property type="entry name" value="THF_DH/CycHdrlase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00767">
        <property type="entry name" value="THF_DHG_CYH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="3 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 8" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="4 8" id="KW-0521">NADP</keyword>
    <keyword evidence="1 8" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="5 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 8" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="THF_DHG_CYH" evidence="9">
        <location>
            <begin position="7"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="THF_DHG_CYH_C" evidence="10">
        <location>
            <begin position="124"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="166"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="286" mass="30393" checksum="23F6BC6EF7A4721F" modified="2013-07-24" version="1">MDMATRMDGKAVSAKVKEQVAQEVAALQGQGVCPGLAVVIVGEDPASRIYVNNKKKACQATGIHSEEYALPASTTQEELLALVDTLNHKEDIHGILVQSPLPKGLDEGAVVEAIDPQKDVDAFHAYNVGKIMMGDYHFLPCTPAGIMELLQAYDIPVEGKRCVVIGRSNIVGKPMAMLLLHQNGTVTICHSRTKDLPEVTRQADILVSAVGKSRFVTAEMVKPGAVVIDVGMNRDENGKLCGDVDFAAVEPVASYITPVPGGVGPMTIAMLLKNTVTAAKLQNGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YB50</accession>
    <name>R6YB50_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">HTH araC/xylS-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00204</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000379">
        <property type="protein sequence ID" value="CDD31120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31120">
        <property type="protein sequence ID" value="CDD31120"/>
        <property type="gene ID" value="BN815_00204"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="202"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="299" mass="34304" checksum="593A602787A9877E" modified="2013-07-24" version="1">MRDKKIEVDATLREIPAYTLGEVPIFRWEHRLDDFQNGELNRHWHSEFLFGLVTEGTLDYYYSPISSRTSRATLEKGDGVFINSGVLHGCRQVTGGTRLFTFGMTPTFFSPPVFGKLYQNIIVPVTHCPVRGAFFPGAIPENRPLLRLLAQFEKLTPRQEDYELHTFELVCRIWRSMLKRLEWKTPDDLASTPRQGQLVALSEMVKFIQDHYQDPISVDDIAKAAKISRRECFRCFKELRGESPTVFLTQYRLSIAATQLATTGLPISAIAEGCGFESSGYFSRLFKARYGKTPREFRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YC03</accession>
    <name>R6YC03_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_00965</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000106">
        <property type="protein sequence ID" value="CDD28814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28814">
        <property type="protein sequence ID" value="CDD28814"/>
        <property type="gene ID" value="BN815_00965"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="2">
        <location>
            <begin position="21"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD28814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="256" mass="28167" checksum="8974EBE02E2F1F12" modified="2013-07-24" version="1">MLKRLTERAWYLPWEEETDRPNLCYLLGERHSLAVDAGNSPAHVGKLYRALEEQGLPLPDFTVLTHWHWDHTFGLGAVHGVGIASAKTNQKLRQVAAWQWTPQAMEERERQGEDIPFCNEHIRREYPRLGEIAVCPAAVELEGSLTLDLGGVRCQLLCQENPHAPDGLLVYVPQEGLVVLGDADCGDFYHLGGGYAPGPTRALLQRLSAWDFQWALPGHSGPESKEGELAYLAAQAGSGRPVQKESAAAETPGDVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEA9</accession>
    <name>R6YEA9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000167">
        <property type="protein sequence ID" value="CDD29624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29624">
        <property type="protein sequence ID" value="CDD29624"/>
        <property type="gene ID" value="BN815_01213"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="72" mass="8291" checksum="313B209AA6C7056F" modified="2013-07-24" version="1">MSTREMINALLDSVPEYKMGYVLAYLQGLTADEEADNAYCEQLYQDYLNDPDPDKHQTISLEELCKREGVEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEI7</accession>
    <name>R6YEI7_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribonuclease 3</fullName>
            <ecNumber evidence="6">3.1.26.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Ribonuclease III</fullName>
            <shortName evidence="6">RNase III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rnc</name>
        <name evidence="10" type="ORF">BN815_00479</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ribonuclease III family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.3" evidence="6"/>
    <dbReference type="EMBL" id="CBGU010000003">
        <property type="protein sequence ID" value="CDD26981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD26981">
        <property type="protein sequence ID" value="CDD26981"/>
        <property type="gene ID" value="BN815_00479"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004525">
        <property type="term" value="F:ribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006397">
        <property type="term" value="P:mRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00593">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00104">
        <property type="entry name" value="RNase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014720">
        <property type="entry name" value="dsRBD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011907">
        <property type="entry name" value="RNase_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000999">
        <property type="entry name" value="RNase_III_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036389">
        <property type="entry name" value="RNase_III_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00035">
        <property type="entry name" value="dsrm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14622">
        <property type="entry name" value="Ribonucleas_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00358">
        <property type="entry name" value="DSRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00535">
        <property type="entry name" value="RIBOc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69065">
        <property type="entry name" value="SSF69065"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02191">
        <property type="entry name" value="RNaseIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50137">
        <property type="entry name" value="DS_RBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00517">
        <property type="entry name" value="RNASE_3_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50142">
        <property type="entry name" value="RNASE_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0507">mRNA processing</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="RNase III" evidence="9">
        <location>
            <begin position="8"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="DRBM" evidence="8">
        <location>
            <begin position="161"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD26981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="230" mass="25892" checksum="1F62099FDE9F543D" modified="2013-07-24" version="1">MRPAARPLEEYEKRIGYRFQNKELLETALTHSSFANEHKCKSYERLEFLGDSVLGFVTAEYLFEHFPQLPEGQLTKTRAGLVCERSLCGFSKALHVGDFLRLSHGERHSGGRERPSILADVFESTTAAIYLDSGSLEEAKKFILRFIAPAAKAQSVKPFKDYKTTLQEIIQQNPEEKLEYVVTGESGPDHDKHFTVEVHLNSNVIGKGGGRSKKEAEQQAAREALELMGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEY4</accession>
    <name>R6YEY4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC-2 family transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00524</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000018">
        <property type="protein sequence ID" value="CDD27156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27156">
        <property type="protein sequence ID" value="CDD27156"/>
        <property type="gene ID" value="BN815_00524"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="201"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="235" mass="25907" checksum="121DB0EDD6B91B45" modified="2013-07-24" version="1">MKAIFKREVRSYFSSPVGYVCVSVLMALYGFWYYQAMLTSSSSYISSVFGTMFSFSMMIIPIITMRSMCDDQKNKTDQALLTAPVGVTAIVLGKFFACCFVYFVATTLGGILPAIVMSTFSTPSWGEIIGNYIGALLYGAAMISIGVFISSLTVSQIIAAIGTFIISVLLMYMDSLASVVSNEVLSTAIQWFSFNDRYSTFTQGMFSISSVIFFISVVAVFVFLTARKVESRRWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YF17</accession>
    <name>R6YF17_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="7">4Fe-4S binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_01318</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000183">
        <property type="protein sequence ID" value="CDD29944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29944">
        <property type="protein sequence ID" value="CDD29944"/>
        <property type="gene ID" value="BN815_01318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009016">
        <property type="entry name" value="Fe_hydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004108">
        <property type="entry name" value="Fe_hydrogenase_lsu_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02906">
        <property type="entry name" value="Fe_hyd_lg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13237">
        <property type="entry name" value="Fer4_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53920">
        <property type="entry name" value="SSF53920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="6"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="5">
        <location>
            <begin position="36"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S" evidence="6">
        <location>
            <begin position="363"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="48795" checksum="869A3D9824CAFD5D" modified="2013-07-24" version="1">MAEFYHSVTLNEEKCVGCTNCIKRCPTEAIRVRGGKAVIASERCIDCGECIRICPHHAKRARHSHLSQLSDFTYTIALPAPSLYGQFNNLDDIDYVLTGLKEMGFDDVFEVSRAAELVSEATRKLMDAGALKRPVISSACPAVVRLIRVRFPDLCDHVLPLKSPMETAAAMAKRDAVKKTGLPPQQIGCFFLTPCPAKVTDIEMPLGIEKSQVDGAIAISEVFPELSHKMDHLEKVEPLANSGVIGVGWSTSGGEAAALLNEKYLAADGIENVIRVLEEIEDERIGDLDFIELNACSGGCVGGVLCVENPYVAKARIQRLRKYLPVSQNHLKGGPIPNVMEWEESLEFSDVLTLSSNLKEAMEMMLQIDEIEKEFPGLDCGACGAPTCRAFAEDVVKGICKDTECIFVYRNRMKKVASTLSELEESMGRFSREEAKEEKEEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFC0</accession>
    <name>R6YFC0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0210 protein BN815_00578</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00578</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0210 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000031">
        <property type="protein sequence ID" value="CDD27306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27306">
        <property type="protein sequence ID" value="CDD27306"/>
        <property type="gene ID" value="BN815_00578"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd08025">
        <property type="entry name" value="RNR_PFL_like_DUF711"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01221">
        <property type="entry name" value="UPF0210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007841">
        <property type="entry name" value="UPF0210"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37560">
        <property type="entry name" value="PTHR37560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05167">
        <property type="entry name" value="DUF711"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="452" mass="47221" checksum="1F5095C7A8911414" modified="2013-07-24" version="1">MNTNEILETINMIDNEDLDVRTITMGISLLDCIDPDVHKASQKVYDKICRYAQHLVKTGEDISRQYGIPIINKRISVTPIAMIAGACPTASPIHFAKALDRAARTVGVNFIGGYSALVHKGFGPGDYALIESIPQALDETELVCSSVNVGTTKAGINMDAVEKMGRIVKETAQRTADRECIGAAKLVVFCNAPEDNPFMAGAFHGPGEPDCVINVGVSGPGVVRAAIKKHGEGKSLTEIAELIKRTAFKITRMGQLVAQEASRRLCVPFGIVDLSLAPTPAIGDSVAYILEGMGLEQCGAHGTTAALALLNDAVKKGGVMASSSVGGLSGAFIPVTEDAGMIEAARSGCLTLTKLEAMTAVCSVGLDMICIPGDTPAEIISGIIADEAAIGMVNSKTTAVRVIPAVGRKAGEELDFGGLLGKGPIMEVNPASPAEFIHRGGKIPAPMQSLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFC5</accession>
    <name>R6YFC5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA-binding helix-turn-helix protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00582</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000032">
        <property type="protein sequence ID" value="CDD27311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27311">
        <property type="protein sequence ID" value="CDD27311"/>
        <property type="gene ID" value="BN815_00582"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="84" mass="9530" checksum="7D591F00763BA3AB" modified="2013-07-24" version="1">MIEFNKFAVGRVVRQLRKSRGLSQEVFSGLAGIARSHLAMIESGSKQANFETVWRIANAFDMAPHELVRLVEEEIQRGERTEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFM2</accession>
    <name>R6YFM2_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Iron only hydrogenase large subunit C-terminal domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01382</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000196">
        <property type="protein sequence ID" value="CDD30124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30124">
        <property type="protein sequence ID" value="CDD30124"/>
        <property type="gene ID" value="BN815_01382"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009016">
        <property type="entry name" value="Fe_hydrogenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004108">
        <property type="entry name" value="Fe_hydrogenase_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027631">
        <property type="entry name" value="FeFe_hydrog_B1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02906">
        <property type="entry name" value="Fe_hyd_lg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53920">
        <property type="entry name" value="SSF53920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04105">
        <property type="entry name" value="FeFe_hydrog_B1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="93"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="126"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="172"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="482" mass="52853" checksum="336BE485245692E4" modified="2013-07-24" version="1">MASVPIKDRKFDTQVQYLKYKVLREVARYAFEDRLLDAYTEIPKLIVKEKPTMRCCIYKERAIVEERIKLAMGGDKNNPNVIEVIDIACDECPMSGYNVSDACRGCIAHRCEDACRRGAITFDEHLHAHIDKSKCVECGQCAKVCPYSAIVNQKRPCENACKIKAISMADSGAAHIDNETCISCGACVYQCPFGAIVDKSFILDVVDMIKKSDHNENYKLYAVVAPSISSQFSYAKLGQVITGIQELGFFHVVEAALGADMVSYAEAAELAEKGFLTSSCCPAFVDYIEKQFPQLKEHVSHNLSPAATIAKYIKETTPGAKVVFIGPCTAKKMEVQKERVKPYIDSCITFEELQALFDSRDIDLKSLPEGVLDNASYYGRIFARSGGLSDAVTQALKEQGLDQTFELKAIACDGIEACRMALLKASKKVLPANFIEGMACIGGCIGGAGCLTHGDKNKADVDKYGMEAMEKTITDAIGVLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFS8</accession>
    <name>R6YFS8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Bacterial extracellular solute-binding protein family 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01432</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000204">
        <property type="protein sequence ID" value="CDD30189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30189">
        <property type="protein sequence ID" value="CDD30189"/>
        <property type="gene ID" value="BN815_01432"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5004425481" evidence="2">
        <location>
            <begin position="33"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="3">
        <location>
            <begin position="104"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="530" mass="58554" checksum="3B4699B4C4460B8B" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6YFV0</accession>
    <name>R6YFV0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Inorganic pyrophosphatase</fullName>
            <ecNumber evidence="5">3.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Pyrophosphate phospho-hydrolase</fullName>
            <shortName evidence="5">PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ppa</name>
        <name evidence="6" type="ORF">BN815_01457</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>diphosphate + H2O = H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:24576"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="3.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.1" evidence="5"/>
    <dbReference type="EMBL" id="CBGU010000208">
        <property type="protein sequence ID" value="CDD30214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30214">
        <property type="protein sequence ID" value="CDD30214"/>
        <property type="gene ID" value="BN815_01457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00412">
        <property type="entry name" value="pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00209">
        <property type="entry name" value="Inorganic_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008162">
        <property type="entry name" value="Pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036649">
        <property type="entry name" value="Pyrophosphatase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10286">
        <property type="entry name" value="PTHR10286"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00719">
        <property type="entry name" value="Pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50324">
        <property type="entry name" value="SSF50324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD30214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="177" mass="20423" checksum="B860C06D39ABE6D7" modified="2013-07-24" version="1">MNIWHDISPKRIKADDFFAVIEITKGGKAKYEMDKETGLLRLDRVLYTSTHYPANYGFIPRTYANDGDPLDVLVLCSENIIPMSLVRCYPIGVIIMDDGGSEDEKIIAIPFDDPTYNNYKDITELPRHIFDEMQHFFTVYKQLEDSTRTQIGEVKDHEAAKAIISSCLERYLNDFCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YG48</accession>
    <name>R6YG48_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage integrase SAM-like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01563</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30329">
        <property type="protein sequence ID" value="CDD30329"/>
        <property type="gene ID" value="BN815_01563"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="56" mass="6299" checksum="EE24D2D619EAB351" modified="2013-07-24" version="1">MAQTHYKQQINAFAQSLRQEERAQGTIENYLRHLRAFAAWLGGGELTPATAPAWKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGB5</accession>
    <name>R6YGB5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30404">
        <property type="protein sequence ID" value="CDD30404"/>
        <property type="gene ID" value="BN815_01625"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="2">
        <location>
            <begin position="115"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="280" mass="31679" checksum="7E86AB661E62BFDF" modified="2013-07-24" version="1">MEHSKVFSAIQAAYPKLTAAERSVADFFLQNRERGDFSSKAVAARLYVSEASLSRFAQKCGFKGYREFIYEYQRPFDEGSPFLSFSQVTKDVLARYQQLLDSSSRLVDEGQMRRVSQMLANSQRVYIYGMGSSGFAAREFALRLMRTGLLVEAITDSHMIRMNAVLVDETVTVVAITLSGATEEVLWGVREARRRGARVVLMTASQDPQVLAQAEEVLPVASEEYLSAGLRISPQFPILVMTDLFFAYYLGSNEFFNRERYQRTMQAMLGEDPKGRERKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGF7</accession>
    <name>R6YGF7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000247">
        <property type="protein sequence ID" value="CDD30449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30449">
        <property type="protein sequence ID" value="CDD30449"/>
        <property type="gene ID" value="BN815_01666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="452" mass="48906" checksum="34CEF32AC4F03958" modified="2013-07-24" version="1">MGYPLNAITLVPAAKAELYLVQPDGTPFANQTVTLQGGVYLEDNYCGEDVSMGPDSNSLVPGNTDGTYTTDGEGKLTVHMDATQFNADGYTGPLTNAALDYWFELRDLNGNQYYPVLVNVQGSMSADRILRTGSAVVVLEEVPDGEENKPYLTAQTLSYGEEDGSGELQVRNVLDSTGKVGPNSTYKYAELTSYFTLWGVDNDKGGITVSMTGENGYAPEGQLVKDDTFPFASIPVLTNTTVLTKATMTDSGWLEPETAESLRASVYQNGELVKQVTMPFQVIDLTEVEPVNVDATAVMVDMSARFRDGIGNGGSDFSFTAGGSNSVTRAFNGNIEDMLGDIQEVTNPLFRVLITPSEDNSVFNVLIWGGYNSLNLQDFDYTQDGFSVDYQLMEPQLDFGVPSVNEIGEMAAGTYDPADTLTLNAMGGTHNNLDFGAQLEGYQRIRGGSRYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGL2</accession>
    <name>R6YGL2_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltransf_11 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000057">
        <property type="protein sequence ID" value="CDD27706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27706">
        <property type="protein sequence ID" value="CDD27706"/>
        <property type="gene ID" value="BN815_00047"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="47"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="243" mass="27817" checksum="BFEA999576272557" modified="2013-07-24" version="1">MKENRYDDPLFFEKYSQMSRSRLGLAGAGEWEDLQKLLPDFAGKQVLDLGCGYGWHCAYAAEHGAAHVTGVDLSEKMLEVARQKASFPQVEYLHAAIEDVDFPPECFDVVFSSLAIHYLQDFPVFAEKVRTWLKPGGDFVFSVEHPIFTAYGNQDWYYDEQGNILHFPVDNYFYEGQRQAVFLGEDVVKYHRTLTTYLDTLLTGGFALRRVVEAKPPERMLDIPGMKDELRRPMMLLVAAVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YGT5</accession>
    <name>R6YGT5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diacylglycerol kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01772</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the diacylglycerol/lipid kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000276">
        <property type="protein sequence ID" value="CDD30559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30559">
        <property type="protein sequence ID" value="CDD30559"/>
        <property type="gene ID" value="BN815_01772"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005218">
        <property type="entry name" value="Diacylglycerol/lipid_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045540">
        <property type="entry name" value="YegS/DAGK_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19279">
        <property type="entry name" value="YegS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00046">
        <property type="entry name" value="DAGKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00147">
        <property type="entry name" value="TIGR00147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAGKc" evidence="2">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="293" mass="31653" checksum="233D39845BA7862F" modified="2013-07-24" version="1">MEVWIMVNNRAGRQHARENGEQVRRVFALGGARARVAYTDTVEEGAAFLQQAVEAQPDLLVCCGGDGTLSQALNVLQQLDAKLPLGYVPMGTTNDFAASLGLPKEPAKAAEQILHGQPRLLDLGRFGEREFLYVASFGAFTQSSYKAAPQVKAVLGHLAYVLESAKELPFLRACSLQVDTGDALYEGEYLFGAVSNTLSVGGILKLDPQAVHLDDGLLELTLVRMPKNPVELGQAAAMLGRGKYDGDLVLQRTVRRAVLTCGEEFPWSLDGEYVPGAAQIEIETLPQALELVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH52</accession>
    <name>R6YH52_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Ribonuclease J</fullName>
            <shortName evidence="9">RNase J</shortName>
            <ecNumber evidence="9">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">rnj</name>
        <name evidence="13" type="ORF">BN815_01904</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homodimer, may be a subunit of the RNA degradosome.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="9"/>
    <dbReference type="EMBL" id="CBGU010000309">
        <property type="protein sequence ID" value="CDD30699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30699">
        <property type="protein sequence ID" value="CDD30699"/>
        <property type="gene ID" value="BN815_01904"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004534">
        <property type="term" value="F:5'-3' exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01491">
        <property type="entry name" value="RNase_J_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011108">
        <property type="entry name" value="RMMBL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004613">
        <property type="entry name" value="RNase_J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042173">
        <property type="entry name" value="RNase_J_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030854">
        <property type="entry name" value="RNase_J_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041636">
        <property type="entry name" value="RNase_J_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001587">
        <property type="entry name" value="RNase_J_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07521">
        <property type="entry name" value="RMMBL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17770">
        <property type="entry name" value="RNase_J_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004803">
        <property type="entry name" value="RnjA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00649">
        <property type="entry name" value="MG423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01292">
        <property type="entry name" value="UPF0036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="7 9" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 9" id="KW-0540">Nuclease</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="9" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Lactamase_B" evidence="12">
        <location>
            <begin position="44"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9 10">
        <location>
            <begin position="388"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR004803-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="CDD30699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="579" mass="63580" checksum="E156CFD4C7B2035E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YH84</accession>
    <name>R6YH84_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">4-phosphoerythronate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00050</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000068">
        <property type="protein sequence ID" value="CDD27896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27896">
        <property type="protein sequence ID" value="CDD27896"/>
        <property type="gene ID" value="BN815_00050"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00670">
        <property type="entry name" value="D_2_HYDROXYACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="4">
        <location>
            <begin position="2"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="5">
        <location>
            <begin position="39"/>
            <end position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD27896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="248" mass="26226" checksum="300523BC8F5CFA02" modified="2013-07-24" version="1">MGTLATGYNTIDVAAAREAGVTVCNVPHYCEDAVAQHALALLLCLCNKVQRSSQAVRAGHWTQAVEESHQSLSPIALAGKRLGVLGYGSTGQRMAALGLALGMEVLLCSRTQKAAPAGCRWVDMETLFRESDVVSLHCPLNGETRGLVGRRLLALLKPTALLINTARGGLVDESALAEALNQGKLAGAGLDVLTQEPPPPSCPLLTARNCVITPHVAWAAQEVRARLIDEVAENLRCFLAGHPRNVVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHS9</accession>
    <name>R6YHS9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">50S ribosomal protein L31</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rpmE</name>
        <name evidence="8" type="ORF">BN815_00759</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Binds the 23S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28091">
        <property type="protein sequence ID" value="CDD28091"/>
        <property type="gene ID" value="BN815_00759"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00501">
        <property type="entry name" value="Ribosomal_L31_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002150">
        <property type="entry name" value="Ribosomal_L31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027491">
        <property type="entry name" value="Ribosomal_L31_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042105">
        <property type="entry name" value="Ribosomal_L31_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33280">
        <property type="entry name" value="PTHR33280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01197">
        <property type="entry name" value="Ribosomal_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01249">
        <property type="entry name" value="RIBOSOMALL31"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00105">
        <property type="entry name" value="L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01143">
        <property type="entry name" value="RIBOSOMAL_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 7" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="7">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD28091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="68" mass="7839" checksum="74EC26BE9DAA1F1E" modified="2013-07-24" version="1">MKQNIHPDYQETTITCACGNVIKTRSTKKDIKVEICSKCHPFFTGKQKLVDTSGRVDMFKKRYGLQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YHV4</accession>
    <name>R6YHV4_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Probable tRNA sulfurtransferase</fullName>
            <ecNumber evidence="3">2.8.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Sulfur carrier protein ThiS sulfurtransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Thiamine biosynthesis protein ThiI</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">tRNA 4-thiouridine synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">thiI</name>
        <name evidence="5" type="ORF">BN815_02143</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[ThiI sulfur-carrier protein]-S-sulfanyl-L-cysteine + a uridine in tRNA + ATP + H(+) + 2 reduced [2Fe-2S]-[ferredoxin] = [ThiI sulfur-carrier protein]-L-cysteine + a 4-thiouridine in tRNA + AMP + diphosphate + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:24176"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:13337"/>
            <dbReference type="Rhea" id="RHEA-COMP:13338"/>
            <dbReference type="Rhea" id="RHEA-COMP:13339"/>
            <dbReference type="Rhea" id="RHEA-COMP:13340"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:136798"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[sulfur-carrier protein ThiS]-C-terminal Gly-Gly-AMP + AH2 + S-sulfanyl-L-cysteinyl-[cysteine desulfurase] = [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH + A + AMP + H(+) + L-cysteinyl-[cysteine desulfurase]</text>
            <dbReference type="Rhea" id="RHEA:43340"/>
            <dbReference type="Rhea" id="RHEA-COMP:12157"/>
            <dbReference type="Rhea" id="RHEA-COMP:12158"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12910"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:90618"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ThiI family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.4" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000355">
        <property type="protein sequence ID" value="CDD30984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30984">
        <property type="protein sequence ID" value="CDD30984"/>
        <property type="gene ID" value="BN815_02143"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004810">
        <property type="term" value="F:tRNA adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140741">
        <property type="term" value="F:tRNA U4 sulfurtransferase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034227">
        <property type="term" value="P:tRNA thio-modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01712">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00021">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020536">
        <property type="entry name" value="ThiI_AANH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003720">
        <property type="entry name" value="tRNA_STrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02568">
        <property type="entry name" value="ThiI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiI" evidence="4">
        <location>
            <begin position="1"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="13"/>
            <end position="14"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD30984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="195" mass="21787" checksum="99BD2055463F7907" modified="2013-07-24" version="1">MMARRGVELTAVHFASPPYTSELAREKVKRLLQKVAAYAGRVKFITVNFTHLQEEIRDKCPEELSTVILRRFMLRAAERVARDEGCAALVTGESLGQVASQTIQAIACTDAVASLPVFRPLIGTDKSEIVELARRIDTFDISIEPFEDCCTIFTPKHPRTKPILHFVESGEEAIDGAALLEEALQNLETEWVYPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI77</accession>
    <name>R6YI77_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha-L-fucosidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02252</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31099">
        <property type="protein sequence ID" value="CDD31099"/>
        <property type="gene ID" value="BN815_02252"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.50.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008928">
        <property type="entry name" value="6-hairpin_glycosidase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012341">
        <property type="entry name" value="6hp_glycosidase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48208">
        <property type="entry name" value="SSF48208"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="443" mass="49111" checksum="64443AE7EF9B94F4" modified="2013-07-24" version="1">MALYFAFGRYLTIASSRPGSLPSNLQGVWNGQLQPAWDSKYTININTEMNYWPVEVCNLSQCHLPFFDLLERMYPRGQEVAQKMYGARGFVAHHNTDLWGDCAPQDSCISSTYWMMGAAWMCTHIWERYEYTLDKEFLREHFHLLRDACLFFVDTLIRDAKDRWVVSPTLSPENRYVHPSGAVACLCEGCAMDSEILTELFRGCISACELLGCEQELAAQLQEILKDLPQPEVASNGTLKEWLEEYEEVEVGHRHMSHLFALHPGHQITPEGTPELAQAARKTLERRLSHGGGHTGWSRAWIINFWASLEDGEKAGENIQLLLGKSTLPNLFDNHPPFQIDGNFGGIAGIAATLLQSSPQAVKLLPALPKAWANGSVEGLRAKGGLTVSLSWKDGKLEKAAITADFPYQGEVSCQGAKAALSLAAGETVELLPTAAGLECRKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>R6YI87</accession>
    <name>R6YI87_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase</fullName>
            <ecNumber evidence="2">2.5.1.145</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lgt</name>
        <name evidence="4" type="ORF">BN815_02262</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + L-cysteinyl-[prolipoprotein] = H(+) + S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[prolipoprotein] + sn-glycerol 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:56712"/>
            <dbReference type="Rhea" id="RHEA-COMP:14679"/>
            <dbReference type="Rhea" id="RHEA-COMP:14680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:57685"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="ChEBI" id="CHEBI:140658"/>
            <dbReference type="EC" id="2.5.1.145"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Protein modification; lipoprotein biosynthesis (diacylglyceryl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Lgt family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.145" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31109">
        <property type="protein sequence ID" value="CDD31109"/>
        <property type="gene ID" value="BN815_02262"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00664"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008961">
        <property type="term" value="F:phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01147">
        <property type="entry name" value="Lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001640">
        <property type="entry name" value="Lgt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30589">
        <property type="entry name" value="PTHR30589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01790">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00544">
        <property type="entry name" value="lgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01311">
        <property type="entry name" value="LGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="103"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="183"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="212"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="243"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="311"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)</name>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="348" mass="38238" checksum="85A5CFF5B43CF5BD" modified="2013-07-24" version="1">MTHHITFPHLGLEFTVNTVAFSIGGFSVYWYGIIIAVGFLLALVYASYSCKKMNIDVNRLFDVVIVGLIAGVVFARLFYVVFYPGDKYRENPMEIFQIHDGGLAIYGGLIGAVVFGGLMAKIRKMKVAAVLDIASLGFLIGQGIGRWGNFINQEAFGSATDLPWGMHSDNTALVVDGNVHPCFLYESLLCLLGFVLLHFFTRKLRRYDGQTFLLYIVWYGACRFFIEGLRTDSLIIPGTGLRVSQVIAAACVVAGIILLVVFRHKTSLTGCGDPHVMEAVGLVEAAEPQPEEEHIASTIFGDLPEEEVREIFSDPLEEKTAKEAPQEKGEDPASQEESEAAAKEAETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIC1</accession>
    <name>R6YIC1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">ATP-dependent Clp protease ATP-binding subunit ClpX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">clpX</name>
        <name evidence="9" type="ORF">BN815_02288</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the ClpX chaperone family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31144">
        <property type="protein sequence ID" value="CDD31144"/>
        <property type="gene ID" value="BN815_02288"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00175">
        <property type="entry name" value="ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004487">
        <property type="entry name" value="Clp_protease_ATP-bd_su_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046425">
        <property type="entry name" value="ClpX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010603">
        <property type="entry name" value="Znf_CppX_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038366">
        <property type="entry name" value="Znf_CppX_C4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06689">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00994">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00382">
        <property type="entry name" value="clpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51902">
        <property type="entry name" value="CLPX_ZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ClpX-type ZB" evidence="8">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="14"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="118"/>
            <end position="125"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD31144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="433" mass="48135" checksum="20A930E8C0942162" modified="2013-07-24" version="1">MPNSNDHEICCSFCGKPQSVADRLIAGSGVYICDACVRLCMSIIEDEDRLKTGRSDEKEVGILLPKPQEIKKKLDEYVVGQDNAKMALSVAVYNHYKRIYFSDDDVEITKSNVLLLGPTGVGKTYLAQTLAKLLDVPFAIADATTLTEAGYVGEDVENILLRLIQAADYDIFKAERGIIYIDEIDKISRKSENQSITRDVSGEGVQQALLKILEGTVASVPPKGGRKHPQQEAININTSNILFICGGAFDGLEKIVQRRTASGSLGFGGEVHGKKELDQIDWMKDVTPHDLVKYGLIPELVGRIPVITALNALDEEALVRILREPKNSLLNQYKKLFDLDKVDLEFTEEALTAVAKKTLERKTGARGLRSILEDILMPLMYQVPSDYTIEKVVITKETVEDGAAPQITYNKERKPVKIKITQPKRRDRRDSVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6YID6</accession>
    <name>R6YID6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00815</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28316">
        <property type="protein sequence ID" value="CDD28316"/>
        <property type="gene ID" value="BN815_00815"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013496">
        <property type="entry name" value="CHP02680"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02680">
        <property type="entry name" value="TIGR02680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="274"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="541"/>
            <end position="575"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="729"/>
            <end position="807"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="923"/>
            <end position="957"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="1348" mass="154862" checksum="47736B7C28B90021" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>R6YID9</accession>
    <name>R6YID9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Copper-exporting P-type ATPase</fullName>
            <ecNumber evidence="3">7.2.2.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Copper-exporting P-type ATPase A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="14">Cu(+)-exporting ATPase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ORF">BN815_02308</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + Cu(+)(in) + H2O = ADP + Cu(+)(out) + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:25792"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:49552"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.2.2.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.8" evidence="3"/>
    <dbReference type="EMBL" id="CBGU010000382">
        <property type="protein sequence ID" value="CDD31164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31164">
        <property type="protein sequence ID" value="CDD31164"/>
        <property type="gene ID" value="BN815_02308"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140581">
        <property type="term" value="F:P-type monovalent copper transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006122">
        <property type="entry name" value="HMA_Cu_ion-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00003">
        <property type="entry name" value="TIGR00003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0186">Copper</keyword>
    <keyword evidence="8" id="KW-0187">Copper transport</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="12 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="105"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="176"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="214"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="367"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="401"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="715"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="743"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="17">
        <location>
            <begin position="3"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="17">
        <location>
            <begin position="811"/>
            <end position="876"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="778"/>
            <end position="808"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00033239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="CDD31164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="881" mass="93781" checksum="F7AEF10D8B99E72F" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIM0</accession>
    <name>R6YIM0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoprotein phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02398</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31254">
        <property type="protein sequence ID" value="CDD31254"/>
        <property type="gene ID" value="BN815_02398"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="245" mass="26701" checksum="73EE71B3105185C1" modified="2013-07-24" version="1">MRVDFETDVGAVRSSNQDSCDCGLFSPNSAWVIVCDGMGGANGGNVASAIAVETIREQLLSGYDENLSKPNLKNLMINAINRANEEVHRVSLERPELHGMGTTVVLLVAAKGTLHVAHVGDSRAYLRHGGVLTQITMDHSYVQDLVNFGQITQEEARVHPKRNIITRVLGVHEEVRCDYAAWDFSPGDLALACSDGLSNYMDEDLLDQYMEEYGDAGRTLPRELIQYAVQCGGSDNITAAVIFNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YIU9</accession>
    <name>R6YIU9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="11">MBOAT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ORF">BN815_00011</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the membrane-bound acyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000407">
        <property type="protein sequence ID" value="CDD31349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31349">
        <property type="protein sequence ID" value="CDD31349"/>
        <property type="gene ID" value="BN815_00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024194">
        <property type="entry name" value="Ac/AlaTfrase_AlgI/DltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028362">
        <property type="entry name" value="AlgI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004299">
        <property type="entry name" value="MBOAT_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03062">
        <property type="entry name" value="MBOAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500217">
        <property type="entry name" value="AlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016636">
        <property type="entry name" value="AlgI_DltB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="33"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="116"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="320"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="413"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="447"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR016636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD31349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="482" mass="54687" checksum="2109C6D6B4ECDFA3" modified="2013-07-24" version="1">MVFSSLVFLCVFFPLQMLVYYLAKGIEARNTVLILFSLVFYAWGEPFFIVLLLFMCFVDWAVSQGIYKYRGTGKSKAFLVLGCVIDLGLLAFFKYTVFILTETQSWFGFPSVVPKIALPIGISFYTFQLLSYMVDVYRQEVPAQPKFRRLLLYVSLFHQCIAGPIVRYKDVSEQILCRHVDSEDMRNGINRFVSGLAKKVLLANVCGSIASRTILSGAAADQAANLPTLENASALTLWLGCFAYALQIYLDFSAYSDMAIGMGLMVGFRYKENFNYPYLANSITDFWRRWHMSLSSFFRDYVYIPLGGNRKGKPRQALNLLIVWFLTGMWHGAGWNFILWGLYYFVFLALEKFLIPGLQRLPAFFAHLYTLVVVFFGWVLFYFTDFTQGIVVLKGLFGLNGNPLINLEGRTMVLNYVFFLAVAVLACTPLPRMLYHKITSSTNGAAIALGTALEYALPVAGLVFSISYLVGDSYNPFLYLQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="17" xmlns="http://uniprot.org/uniprot">
    <accession>R6YK09</accession>
    <name>R6YK09_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative RNA-binding protein YhbY family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00463</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000448">
        <property type="protein sequence ID" value="CDD31759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31759">
        <property type="protein sequence ID" value="CDD31759"/>
        <property type="gene ID" value="BN815_00463"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001890">
        <property type="entry name" value="RNA-binding_CRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035920">
        <property type="entry name" value="YhbY-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01985">
        <property type="entry name" value="CRS1_YhbY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01103">
        <property type="entry name" value="CRS1_YhbY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75471">
        <property type="entry name" value="SSF75471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51295">
        <property type="entry name" value="CRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="CRM" evidence="3">
        <location>
            <begin position="1"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="98" mass="11060" checksum="36AC86FC647E7213" modified="2013-07-24" version="1">MLTSKQRAYLRSLAVNEDTILMMGKSGMSPELAKQADDALEKRELIKGRVLPESSPMTSREAAEELARQTNSEVVQVIGSRFVLYRKKKKDPKIVLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKH9</accession>
    <name>R6YKH9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000118">
        <property type="protein sequence ID" value="CDD29031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29031">
        <property type="protein sequence ID" value="CDD29031"/>
        <property type="gene ID" value="BN815_01035"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="9"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD29031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="266" mass="29468" checksum="AABA14CFB0961653" modified="2013-07-24" version="1">MEFTYPQGLKKALTFSYDDGREFDRRLVEIFNQHGLKGTFHLNSGTLGLHAPNGDFVAPGEVKELYQGHEVAVHTVSHLHPMSSPLSQVSREIAEDRKALEALTGGLVVGMSYPYGCYSDEVVAVAKAQGILYSRTTVATGEFHLPADFLRWHSTCHHGDPRLLDLGKKFLAAPDMGLSLMYVWGHSFEFAWGNSWHIIEDFAALMGGQDHVWYCTNIQLCRYVSAIRAVELSADGKLAYNPTGETLWYESNGQVSTLAPGECKAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6YKN6</accession>
    <name>R6YKN6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Orn/Lys/Arg decarboxylase major domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00086</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Orn/Lys/Arg decarboxylase class-I family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000124">
        <property type="protein sequence ID" value="CDD29116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29116">
        <property type="protein sequence ID" value="CDD29116"/>
        <property type="gene ID" value="BN815_00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000310">
        <property type="entry name" value="Orn/Lys/Arg_deCO2ase_major_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008286">
        <property type="entry name" value="Prn/Lys/Arg_de-COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01276">
        <property type="entry name" value="OKR_DC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03711">
        <property type="entry name" value="OKR_DC_1_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OKR_DC_1" evidence="2">
        <location>
            <begin position="8"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="OKR_DC_1_C" evidence="3">
        <location>
            <begin position="406"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="493" mass="54177" checksum="A48CF2260FC5CFB9" modified="2013-07-24" version="1">MLSQERAPIYEALQEFEKRRVVPFDVPGHKRGRGNPELTQLLGEKCVSMDVNSMKPLDNLCHPVSVIREAEELAAQAFGAAHAFLMVGGTTSAVQAMILSVAKRGEKIILPRNVHRSVMGAMVLCGAVPVYVDPACDDRLGIPLGMRREDVENAIKKHPNAKAVLVNNPTYYGICSDIQAIAKMAHDHGMLCLADEAHGTHFYFSDELPMSAMAAGADMAAVSMHKSGGSLTQSXXXGSLTQSSLLLCGPAMQEGHVRQIINLTQTTSGSYLLLSSLDISRRNLALRGREAFSQVVRLADYAREEINQIGGYYAYSKELVNGDSVFDFDRTKLSVNTLNVGLAGIEVYDLLRDEYDIQIEFGDLGNFLAYLSIGDRPREVERLVSALAEVRRRFGKPDAAGLMRQEYIDPQVVLSPQDAFYAEKQSLPLEESAGHVCSEFVMCYPPGIPILAPGERITPEIVRYIQYAKEKGCSMTGPEDPDIRRLNVLKGVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-09-29" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>R6YL39</accession>
    <name>R6YL39_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">50S ribosomal protein L35</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmI</name>
        <name evidence="7" type="ORF">BN815_01118</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the bacterial ribosomal protein bL35 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000140">
        <property type="protein sequence ID" value="CDD29296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29296">
        <property type="protein sequence ID" value="CDD29296"/>
        <property type="gene ID" value="BN815_01118"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.410.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00514">
        <property type="entry name" value="Ribosomal_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021137">
        <property type="entry name" value="Ribosomal_L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018265">
        <property type="entry name" value="Ribosomal_L35_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001706">
        <property type="entry name" value="Ribosomal_L35_non-mt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037229">
        <property type="entry name" value="Ribosomal_L35_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01632">
        <property type="entry name" value="Ribosomal_L35p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00064">
        <property type="entry name" value="RIBOSOMALL35"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143034">
        <property type="entry name" value="SSF143034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00001">
        <property type="entry name" value="rpmI_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00936">
        <property type="entry name" value="RIBOSOMAL_L35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD29296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="67" mass="7495" checksum="AE44557EB0C752E4" modified="2013-07-24" version="1">MPKLKTHSGAKKRFKLSKNGKVIRAHAYMSHLANGHGKTPKTKRHARGTTVADKTNEAAIKRMLPYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQ60</accession>
    <name>R6YQ60_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">tRNA (Guanine-N(1)-)-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01936</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30731">
        <property type="protein sequence ID" value="CDD30731"/>
        <property type="gene ID" value="BN815_01936"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013653">
        <property type="entry name" value="FR47"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08445">
        <property type="entry name" value="FR47"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="113"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="26216" checksum="4A77F636462E5DBA" modified="2013-07-24" version="1">MDSLRQAQSYLERDPLRYMDMLEPIRRGMVEVTALREDGVLLYNLPGELYMLAADSVESAQALCAGVEKMELAVAHSRETGEYLQKRYGIARCQGCTQAAYLGKEPFPAAQGVEIRPLGQEAFSVVFANYHSFSDPKYIRERLDAGVMRGAFAQGQLLGFIGMHSEGSVGMLEVLPPYRRRGVALALMAAMANHCLERGWVPFSQIFDGNTASLELHRRLGWTLCPEKLYWVMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>R6YQW9</accession>
    <name>R6YQW9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Aconitate hydratase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_02115</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000351">
        <property type="protein sequence ID" value="CDD30956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30956">
        <property type="protein sequence ID" value="CDD30956"/>
        <property type="gene ID" value="BN815_02115"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00223"/>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015932">
        <property type="entry name" value="Aconitase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Aconitase" evidence="7">
        <location>
            <begin position="44"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_C" evidence="8">
        <location>
            <begin position="644"/>
            <end position="693"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD30956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="763" mass="82513" checksum="C16F5DB933882863" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRA4</accession>
    <name>R6YRA4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02239</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000374">
        <property type="protein sequence ID" value="CDD31086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31086">
        <property type="protein sequence ID" value="CDD31086"/>
        <property type="gene ID" value="BN815_02239"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="137" mass="14349" checksum="BE71B2CF9E386222" modified="2013-07-24" version="1">MELDLTAVKTAFAQFSGEAADETGTQREALCAALCGQCARQVASLARGDLSQAAQALWEAPLEELAAAQAFYQLLLTEEAVTPASITAGDLRLAGGSRSEKAAQLVAEKRRAASPALVETDFAFCNIRKGEEDGSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRC8</accession>
    <name>R6YRC8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ACT domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000380">
        <property type="protein sequence ID" value="CDD31126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31126">
        <property type="protein sequence ID" value="CDD31126"/>
        <property type="gene ID" value="BN815_02270"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="16"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="1">
        <location>
            <begin position="95"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="152" mass="16163" checksum="A80AE9A769E1CC16" modified="2013-07-24" version="1">MSATTVISTVDNITLVTLQEFPANVASIAKVLEEISKCGINIDMISMAPTHGATTGLSFTISDEDMIDILGFTSKLKQETDIDVIVSSVNHKISVYDPIMKNTPGIAAQVFGAISSTDADIRLITTSEVEISLLVTEADFDTVLAAIQEALL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRJ0</accession>
    <name>R6YRJ0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alanine-glyoxylate amino-transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_02350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000384">
        <property type="protein sequence ID" value="CDD31206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31206">
        <property type="protein sequence ID" value="CDD31206"/>
        <property type="gene ID" value="BN815_02350"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004069">
        <property type="term" value="F:L-aspartate:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024551">
        <property type="entry name" value="AspAT_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12897">
        <property type="entry name" value="Asp_aminotransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="427" mass="47714" checksum="FB464736F6A06B45" modified="2013-07-24" version="1">MKLAAKTTDELQKIHQEALEQYEDFKSLHLQLNMARGKPCAEQLDLALGVLEALHARSEFANSNGDDCRNYGVWNGLPEMRAIFSEMMDVPADQIILGNNSSLQMMFDCIAQGFTHGYSGCTPWARQEKVKFLCPAPGYDRHFAVTEYFGFEMIPVPMLKTGPDMDIIERLVAQDDTIKGCWCVPKYSNPTGITYSDETVRRFAALKPAAKDFRIMWDNAYCVHDLTDTPDTLLDLYAECLKNGTEDNVLFFASTSKISFPGAGVAALAASKRNIEDLKRRITTQTIGPDKLNQLRHILFLHDINGVHNLMQGHRKILEPKFQIVEESLERELGDLGIAKWSKPNGGYFVNLDVMNGCAKRVVSLCKEAGVILTDAGATFPYGADPNDSNIRVAPTFPPQEELRQAMHLLCICVRLAASEKLLSERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>R6YRR4</accession>
    <name>R6YRR4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_00219</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31281">
        <property type="protein sequence ID" value="CDD31281"/>
        <property type="gene ID" value="BN815_00219"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1750.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038109">
        <property type="entry name" value="DNA_bind_recomb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025827">
        <property type="entry name" value="Zn_ribbon_recom_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13408">
        <property type="entry name" value="Zn_ribbon_recom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51737">
        <property type="entry name" value="RECOMBINASE_DNA_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="2">
        <location>
            <begin position="26"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Recombinase" evidence="3">
        <location>
            <begin position="183"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="408"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="525" mass="60782" checksum="436E158F3160C712" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSG1</accession>
    <name>R6YSG1_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 9">50S ribosomal protein L23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">rplW</name>
        <name evidence="10" type="ORF">BN815_00367</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31491">
        <property type="protein sequence ID" value="CDD31491"/>
        <property type="gene ID" value="BN815_00367"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_B">
        <property type="entry name" value="Ribosomal_L23_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_L23/L15e_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001014">
        <property type="entry name" value="Ribosomal_L23/L25_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_L25/23"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="PTHR11620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="SSF54189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00050">
        <property type="entry name" value="RIBOSOMAL_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 7 8" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 7 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 7 9" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="96" mass="11103" checksum="606EEE5C9F2C3942" modified="2013-07-24" version="1">MAAQDIIIRPIITEKTMDGNSQKKYTFEVSKTSTKIDIKRAVEELFGVKVSKVNTLHVRGHMRRQGRHEGYTRSWKKAVVTLTEDSKTIEFFESMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YSR0</accession>
    <name>R6YSR0_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_00418</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000433">
        <property type="protein sequence ID" value="CDD31601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31601">
        <property type="protein sequence ID" value="CDD31601"/>
        <property type="gene ID" value="BN815_00418"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12838">
        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="149"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="179"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23686" checksum="29262827388D998B" modified="2013-07-24" version="1">MDAQTCLNKLRYVGVLSFATVDREGNPQVRNISAIHYEPDALYFFTARGKDFCKELLARGKVQILGYTRYKEMIRLSGTATPVPPGEQEKWRDLIFAELPYLSNVYPGETRSIGMVFVIRDMAIEYFHLGVNPIFRESYTVGQGRAKPKGYTITEDCISCGACVEACPQRAITLGAPSVIHQEHCLHCGNCVEHCPVAAVIPREQETVPPET</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YT32</accession>
    <name>R6YT32_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ORF">BN815_00468</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000449">
        <property type="protein sequence ID" value="CDD31766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31766">
        <property type="protein sequence ID" value="CDD31766"/>
        <property type="gene ID" value="BN815_00468"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="76"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="CDD31766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="108" mass="11195" checksum="AB4D7D84828DFE7B" modified="2013-07-24" version="1">MNLLYFAACALPALWGHLRQGLVDRQAALWSAAAGAPACVLAAFVASSLEVTLLRRLFGVFLLAVGLRELFSKAENPPAGGAHKSPQGAHTSHETQTGPSAGNSTQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAH8</accession>
    <name>R6ZAH8_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD(P)H-hydrate epimerase</fullName>
            <ecNumber evidence="1">5.1.99.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NAD(P)HX epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nnrE</name>
        <name evidence="4" type="ORF">BN815_00636</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-NADHX = (6S)-NADHX</text>
            <dbReference type="Rhea" id="RHEA:32215"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:64075"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-NADPHX = (6S)-NADPHX</text>
            <dbReference type="Rhea" id="RHEA:32227"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:64077"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="1">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NnrE/AIBP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.1.99.6" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000045">
        <property type="protein sequence ID" value="CDD27462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27462">
        <property type="protein sequence ID" value="CDD27462"/>
        <property type="gene ID" value="BN815_00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052856">
        <property type="term" value="F:NADHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052857">
        <property type="term" value="F:NADPHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01966">
        <property type="entry name" value="NADHX_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004443">
        <property type="entry name" value="YjeF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036652">
        <property type="entry name" value="YjeF_N_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03853">
        <property type="entry name" value="YjeF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64153">
        <property type="entry name" value="SSF64153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00197">
        <property type="entry name" value="yjeF_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51385">
        <property type="entry name" value="YJEF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1" id="KW-0630">Potassium</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjeF N-terminal" evidence="3">
        <location>
            <begin position="9"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="NADPHX" evidence="1">
        <location>
            <begin position="58"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="NADPHX" evidence="1">
        <location>
            <begin position="129"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="228"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="264"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD27462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="401" mass="40806" checksum="387CFD16CAFC4D64" modified="2013-07-24" version="1">MKLFCRDEMQRLEMAAVAAGVPLSQLMDNAGAAVAQEVERRCRPVGGKRAVVLCGKGNNGGDGFVCAKLLAQRGMACWVVLAQGKPATDLAAAAFGALPPQVAVLPGEELEQIRPVLEAADVLIDCVFGFSFRGELSGLPQKLLAYGSGLPCLKVSADLPSGVECDTGRVSAGAFRADVTVTFTGKKPANVSYPAKEFCGETVVRQVGVPAALVEGAETRVFETDGHFPRQWLXXPPPVAAPAGRPGQQGRHGQAAAGVRQLGHGRGLRYGGPGGLAQRRGIADHRRGGAAVPHPGPSGAPGGVCGAGLGKPPGGEPAGAAGRLGQVHRLRHGLRPGAAGGAGVPFGVLPLPAALGGRRRRRQLPQPPPGVFGGAGNPPGAHPSPRGDGPAVRRHHPGNPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZAU3</accession>
    <name>R6ZAU3_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ORF">BN815_00663</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000050">
        <property type="protein sequence ID" value="CDD27582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27582">
        <property type="protein sequence ID" value="CDD27582"/>
        <property type="gene ID" value="BN815_00663"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="4"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="300"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="337"/>
            <end position="344"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="CDD27582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="566" mass="62627" checksum="5C6A439F98B4CD4E" modified="2013-07-24" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZC58</accession>
    <name>R6ZC58_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PF06107 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00751</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000077">
        <property type="protein sequence ID" value="CDD28072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28072">
        <property type="protein sequence ID" value="CDD28072"/>
        <property type="gene ID" value="BN815_00751"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009296">
        <property type="entry name" value="DUF951"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38455">
        <property type="entry name" value="PTHR38455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06107">
        <property type="entry name" value="DUF951"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037263">
        <property type="entry name" value="DUF951_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD28072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="63" mass="7258" checksum="CCEDC2E7C1883E29" modified="2013-07-24" version="1">MDVRVGDVLRMKKPHPCGSLEFTVLRVGMDFKIRCNGCGREVMIPRLKCEKNIKKILRPEGEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZC88</accession>
    <name>R6ZC88_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ORF">BN815_00766</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="9">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CBGU010000078">
        <property type="protein sequence ID" value="CDD28112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28112">
        <property type="protein sequence ID" value="CDD28112"/>
        <property type="gene ID" value="BN815_00766"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="PTHR20856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 9" id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword evidence="4" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="RNA_pol_Rpb2_6" evidence="7">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_Rpb2_7" evidence="8">
        <location>
            <begin position="137"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="243"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="6">
        <location>
            <begin position="247"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="CDD28112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="282" mass="31539" checksum="551FAA87E4F09EFE" modified="2013-07-24" version="1">MSRILPEEDMPFLPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGMAAKALGWKIMTPVFDGAHEADIRECFRMGGLPEDGKFRLRDGRTGEFFDNPVTVGYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGQNIPKPGIPESFKVLIKELQSLGLDVKVLDKDNQEIDLKQNFDDEDDMGFHHDDTAFDEQNVADDLDGYSMEDENGDPLLEEDGYTDDDFSFDDGDDDLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZDP9</accession>
    <name>R6ZDP9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidinol dehydrogenase</fullName>
            <shortName evidence="4">HDH</shortName>
            <ecNumber evidence="4">1.1.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hisD</name>
        <name evidence="11" type="ORF">BN815_00908</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-histidinol + 2 NAD(+) = 3 H(+) + L-histidine + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:20641"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4 9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5 10">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="11">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.23" evidence="4"/>
    <dbReference type="EMBL" id="CBGU010000098">
        <property type="protein sequence ID" value="CDD28647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28647">
        <property type="protein sequence ID" value="CDD28647"/>
        <property type="gene ID" value="BN815_00908"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01024">
        <property type="entry name" value="HisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="1 4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 9" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="258"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="327"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="360"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="CDD28647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="429" mass="46683" checksum="B5B53C45D09D3A61" modified="2013-07-24" version="1">MIKVVQGDRQTCQSFVEDLKSRVGQASPEIEQTVRDVIEQVRAGGDSAVKAFSEKFDGWTPENLELSREALEQAVAECDPAFIQSLRKAAENIRAFHQRQKQQSRIDPMPNGIITGQRVRGLHRVGVYVPGGTAGYPSSVLMNVIPAQVAEVGEIVMATPPGRTGRPDPNILAAAYVAGVDRVFLMGGAQAVAALALGTESVPKVDKIVGPGNIFVATAKKQLYGVVDIDMIAGPSEILIVADESANPTFLAADLMSQAEHDRMASAILITPSRELAERTVAQVYRQMEYLSRKEIIQEALERFGGVIVCESMDEAVDFANELAPEHLEICVDNPFSYIGRLDNAGSVFLGHYSPEPLGDYFAGPNHVLPTGGTARFFSPLSVDDFIKKSSFIYYPKEELEKAAPDIIRLARTEELTAHANSIQVRVED</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="11" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZGW7</accession>
    <name>R6ZGW7_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000169">
        <property type="protein sequence ID" value="CDD29702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29702">
        <property type="protein sequence ID" value="CDD29702"/>
        <property type="gene ID" value="BN815_01230"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd10227">
        <property type="entry name" value="ParM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042051">
        <property type="entry name" value="ParM-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="301" mass="33802" checksum="D2D36FF130D48D02" modified="2013-07-24" version="1">MLIAIDHGNYAIKTPHTAFLSGLSEHKVKPPIAEEVVEYVGSYWTLSGKRLPYMRDKTWDSRFFVLTLFAIGRELERRGSLLPFEQIDLAVGLPPEHYGMLREKFAQYFRRGVVKFTYKEQPIHLDIRRVLVYPQAYAAVIPLSGQLLKTPRVFLVDIGGFTTDVLLLRGGKPDLQFCRSLESGVITMDNAIIGKVNAQYDMMVDDELISDVLLGRETILPQEVKQTIQEAAKTHAKDILDQLRELGVDLRTNPAIFIGGGSSLFRPLLEGSPMVAKADFVEDPKANAIGYEMLAAHQLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="14" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZHQ5</accession>
    <name>R6ZHQ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000186">
        <property type="protein sequence ID" value="CDD29987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29987">
        <property type="protein sequence ID" value="CDD29987"/>
        <property type="gene ID" value="BN815_01329"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018770">
        <property type="entry name" value="ChloroindolylP_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10112">
        <property type="entry name" value="Halogen_Hydrol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="63"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD29987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="234" mass="26535" checksum="856A405E4B01C72D" modified="2013-07-24" version="1">MKMVRRGSPAKFYITAAAALVYATSAPLYEPYHFVIFAAVLVLVFLGSSALFKGKKEFVPIQPEKPKEEPKKEPEKEEKSHTGNPEVDKIIDEGREYLKKLRAADDAIPDETLSEDITRMERASADIFRYIADHPEKAPQIRKFMNYYLPTTLKLLGSYQRLSAQNVKGENITSTLFNIAGMMHTVADAFEKQLDSLYAEEAMDISADITVFETLLKQEGFVDEDKQEQEEAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZIQ5</accession>
    <name>R6ZIQ5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000221">
        <property type="protein sequence ID" value="CDD30337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30337">
        <property type="protein sequence ID" value="CDD30337"/>
        <property type="gene ID" value="BN815_01571"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029442">
        <property type="entry name" value="GyrI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011256">
        <property type="entry name" value="Reg_factor_effector_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06445">
        <property type="entry name" value="GyrI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55136">
        <property type="entry name" value="SSF55136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="275" mass="31943" checksum="303F3F2481A9632D" modified="2013-07-24" version="1">MEDYFSIGELSRYQNISKQTLIFYDKLGLFQPAYVDPNNGYRYYTARQLDELDTILILKKSGLSLQRIKELLEHYTTESSQKVLREQLGAIDRQMEELRLLRSRLSQRCSQLEDANLHKGEPPRLEVLEEQYLLTRPVEAPYSLREISIATKQCFAQAFQEELPIFFQSGVRVPLERILAKRYTEASTAFLPIEKTSRAGNIQRLPGGLCATLYHRGDYLSIGATYERLLAFCRERRLKLLSDSYEFCVNDYITTGDESEYITQILFFVEQEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJ95</accession>
    <name>R6ZJ95_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptide chain release factor 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ORF">BN815_01725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000270">
        <property type="protein sequence ID" value="CDD30512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30512">
        <property type="protein sequence ID" value="CDD30512"/>
        <property type="gene ID" value="BN815_01725"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="2">
        <location>
            <begin position="5"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="CDD30512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="150" mass="16833" checksum="C8AC2D87BF2D349E" modified="2013-07-24" version="1">MELDNTVEIPPEDIKMEVYRASGAGGQKVNKTSSAVRLIHIPTGITVSCQVERSQFQNREVAMKMLVAKLMEIKERENLEKISDIKGEQKEITWGSQIRSYVFMPYTMVKDHRTGYETGNVNAVMDGDLDGFINAYLTAQSQGTLGENIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJV5</accession>
    <name>R6ZJV5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01937</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000311">
        <property type="protein sequence ID" value="CDD30732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30732">
        <property type="protein sequence ID" value="CDD30732"/>
        <property type="gene ID" value="BN815_01937"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="212" mass="23287" checksum="E9A8C28BB0017DF3" modified="2013-07-24" version="1">METRIMKILSKNGSVPLKLIYGHFATNHSHINCYLDMTTLKTRQSEAQLAAQALVQHYVATTIVDTILCLDGTQIIGAYLAQELSRAGFVSINAHQTIYVVTPEYDATSQLLFRDNLQPMIRDKHVLILTASVTTGISARKAMECVQYYGGTTAGVCAIFSAQQEVDGTPVQAVFGPEDVTGYETYPSHDCPLCRSKNRLDALVNGYGYSKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJY8</accession>
    <name>R6ZJY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thiamine biosynthesis protein ThiS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01971</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000318">
        <property type="protein sequence ID" value="CDD30767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30767">
        <property type="protein sequence ID" value="CDD30767"/>
        <property type="gene ID" value="BN815_01971"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010035">
        <property type="entry name" value="Thi_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34472">
        <property type="entry name" value="PTHR34472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01683">
        <property type="entry name" value="thiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="64" mass="6697" checksum="EFB553C06F4B9A81" modified="2013-07-24" version="1">MVTVNGQPQNAAGKPLAQLLEELGYQAGRIAVERNGEIVPKAQYGAVTLEDGDTLEVVRFVGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZK28</accession>
    <name>R6ZK28_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoribosylformylglycinamidine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00161</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000323">
        <property type="protein sequence ID" value="CDD30812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30812">
        <property type="protein sequence ID" value="CDD30812"/>
        <property type="gene ID" value="BN815_00161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14303" checksum="1856CC3295C81CAF" modified="2013-07-24" version="1">MEIFGIYVSRMVYTRVTSVKSPWMAGVNAGDIFTVPVSHGEGRFVADDKALRKLIENGQVATQYVDADGTVSGDIQWNPNGSVCAIEGITSPDGRVLGKMGHSERKGTDLYKNVPGEKDQLLFESGVKYFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKT8</accession>
    <name>R6ZKT8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative proton-coupled thiamine transporter YuaJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02206</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000367">
        <property type="protein sequence ID" value="CDD31052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31052">
        <property type="protein sequence ID" value="CDD31052"/>
        <property type="gene ID" value="BN815_02206"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015234">
        <property type="term" value="F:thiamine transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012651">
        <property type="entry name" value="Thia_Transptr_ThiT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09515">
        <property type="entry name" value="Thia_YuaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="211" mass="22739" checksum="378819C9F74E7473" modified="2013-07-24" version="1">MNSVSKRTFNLVLGGIMVAMATVLGFIKVYEAPYGGAITVCSMLPILFYSYRCGLKWGLGAGLVHSVLQLLLGMSALRGLSVGTLVGSIFLDYILAFTVLGLGGMFRGKIKNDAVAFTLGGFVAMMLRYFCSFLSGWILWADVVNDAPYMQEVIAAYIPALSNLTGTTLAVVYSLVYNGVYMIPEIILTCVVGFLLVQFAGKQVLDKPKQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZKY8</accession>
    <name>R6ZKY8_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hemolysin TlyA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_02265</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TlyA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000378">
        <property type="protein sequence ID" value="CDD31112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31112">
        <property type="protein sequence ID" value="CDD31112"/>
        <property type="gene ID" value="BN815_02265"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004538">
        <property type="entry name" value="Haemolysin_A/TlyA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32319:SF0">
        <property type="entry name" value="PTHR32319:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005578">
        <property type="entry name" value="TlyA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00478">
        <property type="entry name" value="tly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="3">
        <location>
            <begin position="3"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="246"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD31112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="272" mass="30263" checksum="2BFFBCB1655DC464" modified="2013-07-24" version="1">MKKRLDILVTERGLAESREKAKALIMAGQIYVDNQKADKPGDTFPEECRIESRGKGLPYVSRGGLKLEKAMEEFPITLEGKTCMDIGASTGGFTDCMLQKGARKVYAVDVGYGQLAWNLRNDPRVVNLERTNARYLTREQIPEEVQFFSVDVSFISLTLILPPVRELLAPGGQAVCLIKPQFEAGREKVGKKGVVRDRAVHEEVIEKIRCFALENGYSVLGLTYSPVKGPEGNIEYLIYLERSEEPVQNPQAPPARQVVEQSHQALDKPAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="10" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLD0</accession>
    <name>R6ZLD0_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF6440 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_02401</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000388">
        <property type="protein sequence ID" value="CDD31257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31257">
        <property type="protein sequence ID" value="CDD31257"/>
        <property type="gene ID" value="BN815_02401"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045515">
        <property type="entry name" value="DUF6440"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20037">
        <property type="entry name" value="DUF6440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6440" evidence="1">
        <location>
            <begin position="8"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF20037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD31257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="65" mass="7126" checksum="A4FE35DAAD539C9E" modified="2013-07-24" version="1">MLEIQPGRFVLKSRESLHGRELDVVVDSQTGVNYVTYLASSSAPLSPLLDRDGKPLTDTLPIDTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLE5</accession>
    <name>R6ZLE5_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phage tail component domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00210</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31272">
        <property type="protein sequence ID" value="CDD31272"/>
        <property type="gene ID" value="BN815_00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="24048" checksum="CDAF7883F98CA63E" modified="2013-07-24" version="1">MRPDVKINDLWMFAMGWLREEIDFPTPQSQTNTVVVPGRNAPIRFTEALGWVSYQPRSFSITLSMLGSREKFNQMKDVLANLYAGQLCHVILSEEPELYAVGTLELEPAYDPLTGKGQMVLSCSDGDSYRYHTEETEVSITGGGTAILNNDYMPVVPTVVTTAETALSWSIGEDVFRKSVSAGTWTFPELELQEGQNSVSITGEGTTTFRYREGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZLE9</accession>
    <name>R6ZLE9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ORF">BN815_00215</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">MGS:94</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="caution">
        <text evidence="6">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000392">
        <property type="protein sequence ID" value="CDD31277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31277">
        <property type="protein sequence ID" value="CDD31277"/>
        <property type="gene ID" value="BN815_00215"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006480">
        <property type="entry name" value="Phage_holin_4_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05105">
        <property type="entry name" value="Phage_holin_4_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01593">
        <property type="entry name" value="holin_tox_secr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="CDD31277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="140" mass="15291" checksum="7D88086E8460435D" modified="2013-07-24" version="1">MKEFWNTIQLIFSAVGGWLGYFLGGCDGLLYALIAFVVIDYITGVMCAIINKQLSSEVGFKGIFRKVLIFLLVGIANIIDVQVIGTGAVLRTAVIFFYISNEGVSLLENAGHLGLPIPEKIKTVLEQLHDRAENGKEGNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZM66</accession>
    <name>R6ZM66_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">30S ribosomal protein S4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpsD</name>
        <name evidence="10" type="ORF">BN815_00393</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">MGS:94</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="6">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000425">
        <property type="protein sequence ID" value="CDD31517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31517">
        <property type="protein sequence ID" value="CDD31517"/>
        <property type="gene ID" value="BN815_00393"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_B">
        <property type="entry name" value="Ribosomal_S4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_S4/S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_S4/S9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005709">
        <property type="entry name" value="Ribosomal_S4_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018079">
        <property type="entry name" value="Ribosomal_S4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="PTHR11831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF4">
        <property type="entry name" value="PTHR11831:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00163">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01017">
        <property type="entry name" value="rpsD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00632">
        <property type="entry name" value="RIBOSOMAL_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6 7" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3 6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Ribosomal_S4" evidence="9">
        <location>
            <begin position="3"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="S4" evidence="8">
        <location>
            <begin position="89"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01390"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="CDD31517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="200" mass="22839" checksum="617D8D61106B9868" modified="2013-07-24" version="1">MAKNMQPIAKRCHALGISPAVMGYAKKTTHRNPGSQMRRKKGEYALQLQEKQKVKFVYGILEKQFRSYYEKATRMEGRPGENLLILVERRLDNVVYRLGFATTRRDARQLVTHGHFTVNGKKVDIPSYLVKVGDVIEVKASSRSSVKFSKLTGEDAPLVTVPQWLEREKNALKGTVVQMPVREDIDLPVEEHLIVELYSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-01-19" version="20" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZMH9</accession>
    <name>R6ZMH9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L33</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rpmG</name>
        <name evidence="5" type="ORF">BN815_00436</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bL33 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000439">
        <property type="protein sequence ID" value="CDD31657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31657">
        <property type="protein sequence ID" value="CDD31657"/>
        <property type="gene ID" value="BN815_00436"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00294">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038584">
        <property type="entry name" value="L33_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001705">
        <property type="entry name" value="Ribosomal_L33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018264">
        <property type="entry name" value="Ribosomal_L33_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43168">
        <property type="entry name" value="PTHR43168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00471">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01023">
        <property type="entry name" value="rpmG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00582">
        <property type="entry name" value="RIBOSOMAL_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD31657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="49" mass="6071" checksum="500EA85E30014C70" modified="2013-07-24" version="1">MRVKIVLACTECKQRNYNTKKNKKNDPDRLEMNKYCRFCRKHTLHRETK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="9" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZML4</accession>
    <name>R6ZML4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000443">
        <property type="protein sequence ID" value="CDD31692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD31692">
        <property type="protein sequence ID" value="CDD31692"/>
        <property type="gene ID" value="BN815_00448"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD31692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="74" mass="8089" checksum="D0B7494C7667062E" modified="2013-07-24" version="1">MEVTSVPALCRVLDGWQLEYSVVDGAAADIYGELNITALVDALRKEGCSLLSVKERDESLESYYINLVGGERHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="13" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZB1</accession>
    <name>R6XZB1_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01046</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000120">
        <property type="protein sequence ID" value="CDD29068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29068">
        <property type="protein sequence ID" value="CDD29068"/>
        <property type="gene ID" value="BN815_01046"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD29068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="41" mass="4815" checksum="1FEFC806A7D26C13" modified="2013-07-24" version="1">MGSVPSRVVGRMERHRFMEAQVQRYQSMVNALKEDTAWANF</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6XZU9</accession>
    <name>R6XZU9_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4314 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00519</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000017">
        <property type="protein sequence ID" value="CDD27145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27145">
        <property type="protein sequence ID" value="CDD27145"/>
        <property type="gene ID" value="BN815_00519"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025463">
        <property type="entry name" value="DUF4314"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14192">
        <property type="entry name" value="DUF4314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4314" evidence="1">
        <location>
            <begin position="5"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD27145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="83" mass="9400" checksum="458619968FBD6944" modified="2013-07-24" version="1">MLYHKDFVERMRNQYPPGTRVEVVSLCNEEEHLKPGMKGTVVGVDDQPALLVNWDNGSSLSLLIGKDHFRVVPQQEESGMTMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="16" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y307</accession>
    <name>R6Y307_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator BlaI/MecI/CopY family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01629</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the BlaI transcriptional regulatory family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000239">
        <property type="protein sequence ID" value="CDD30408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30408">
        <property type="protein sequence ID" value="CDD30408"/>
        <property type="gene ID" value="BN815_01629"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005650">
        <property type="entry name" value="BlaI_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03965">
        <property type="entry name" value="Penicillinase_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="131" mass="14917" checksum="9B2DEB35EA50C3E3" modified="2013-07-24" version="1">MKTTYFRLTKSENEIMELLWREGRPLSRSEIIDLTPDRTWKPASIHILLNSMLEKGAIQVAGFVQSTKNYARTFTPTLTADEYAVLQFKHSSAFNEQSVLCLVSALVEDIQDQDTLAKLGDILEKRKLQLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="18" xmlns="http://uniprot.org/uniprot">
    <accession>R6Y8K4</accession>
    <name>R6Y8K4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_00666</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000051">
        <property type="protein sequence ID" value="CDD27599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD27599">
        <property type="protein sequence ID" value="CDD27599"/>
        <property type="gene ID" value="BN815_00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD27599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="216" mass="23650" checksum="63006C777BF6C43A" modified="2013-07-24" version="1">MLHTILWDWNGTLLDDVEVALAAMNEMLARRGLPLLQGREPYRDIFTFPVRVYYTAAGLDLSAEPFESLAVEWTGLYHRFYPRCGLFPAAREVLQAVGEMGLEQAIVSASHQQALDSQVEEQGLGGFFQARLGISDIYAGSKAGLAQRYLESQGVPPEQALLIGDTLHDWEVAQEAGCPCVLLAQGHQSRALLETAGVPVLESLIQVPAFLRGLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="19" xmlns="http://uniprot.org/uniprot">
    <accession>R6YA46</accession>
    <name>R6YA46_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_01994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000320">
        <property type="protein sequence ID" value="CDD30790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30790">
        <property type="protein sequence ID" value="CDD30790"/>
        <property type="gene ID" value="BN815_01994"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD30790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="175" mass="19904" checksum="AB3F280AD2819489" modified="2013-07-24" version="1">MTVGERIKAARKKAGMTQKELADKLGIPYQGISQYERGIRNPKIATVKKIAEALQVFPSELIPGEILASYDAFEILASDIRDDMIRESATPDEWEEAVNTKVTDIQEGLVYEEREKRRRHFLLTAFNRLNEKGQEKAVEAVENLLFVPDYRDNEKLLGEEIRPDNKKEGKAPGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-04-07" version="12" xmlns="http://uniprot.org/uniprot">
    <accession>R6YAN4</accession>
    <name>R6YAN4_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="2">IMP cyclohydrolase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ORF">BN815_00827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000085">
        <property type="protein sequence ID" value="CDD28339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD28339">
        <property type="protein sequence ID" value="CDD28339"/>
        <property type="gene ID" value="BN815_00827"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003937">
        <property type="term" value="F:IMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006188">
        <property type="term" value="P:IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020600">
        <property type="entry name" value="IMP_cyclohydrolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036795">
        <property type="entry name" value="IMP_cyclohydrolase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07826">
        <property type="entry name" value="IMP_cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75569">
        <property type="entry name" value="SSF75569"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IMP_cyclohyd" evidence="1">
        <location>
            <begin position="15"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="CDD28339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="233" mass="25601" checksum="3AC01F3388F91B27" modified="2013-07-24" version="1">MKPVDIKQDLAGNSYPGRGIVIGQSADGKQAVVAYFIMGRSVNSRNRVFAEEPDGIRTEAADPAKMEDPSLIIYHPVRQMGRGLIITNGDQTDTIRDFLEKGLPFEQALRTREFEPDGPNWTPRISGLLSPDGSYKLSILKAADEAGTGCLRQTFEYPGQPGLGHFIHTYKCDGNPIPSYEGEPTPVSIEGDIDTFTASLWENLNQDNKVSLFVRTIDLATGATDTRIVNKNQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-05-25" version="21" xmlns="http://uniprot.org/uniprot">
    <accession>R6YDK3</accession>
    <name>R6YDK3_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">D-ribose pyranase</fullName>
            <ecNumber evidence="2">5.4.99.62</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01138</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>beta-D-ribopyranose = beta-D-ribofuranose</text>
            <dbReference type="Rhea" id="RHEA:25432"/>
            <dbReference type="ChEBI" id="CHEBI:27476"/>
            <dbReference type="ChEBI" id="CHEBI:47002"/>
            <dbReference type="EC" id="5.4.99.62"/>
        </reaction>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.62" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000144">
        <property type="protein sequence ID" value="CDD29374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29374">
        <property type="protein sequence ID" value="CDD29374"/>
        <property type="gene ID" value="BN815_01138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0062193">
        <property type="term" value="F:D-ribose pyranase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048029">
        <property type="term" value="F:monosaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005996">
        <property type="term" value="P:monosaccharide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023750">
        <property type="entry name" value="RbsD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007721">
        <property type="entry name" value="RbsD_FucU"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05025">
        <property type="entry name" value="RbsD_FucU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102546">
        <property type="entry name" value="SSF102546"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD29374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="143" mass="16036" checksum="DDE8520DDD8057F4" modified="2013-07-24" version="1">MLKGIPAILPPELLKILMEMGHGDELLLADANYPRLGQPERVIRCDGHGIPELMDAILSLMPLDSYVEHPTTFMAVLPNDPYVPEIWDTYRAIGAKHEEQGLREEAIDKYTFYKRGAQTYAAVVTGERALYANVILKKGVVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2021-06-02" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YEX9</accession>
    <name>R6YEX9_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cell envelope-like function transcriptional attenuator common domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ORF">BN815_01295</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">MGS:94</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LytR/CpsA/Psr (LCP) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000182">
        <property type="protein sequence ID" value="CDD29909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD29909">
        <property type="protein sequence ID" value="CDD29909"/>
        <property type="gene ID" value="BN815_01295"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004474">
        <property type="entry name" value="LytR_CpsA_psr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03816">
        <property type="entry name" value="LytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00350">
        <property type="entry name" value="lytR_cpsA_psr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="LytR_cpsA_psr" evidence="4">
        <location>
            <begin position="181"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="77"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03816"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="CDD29909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="444" mass="48884" checksum="83E8155772BC3D2E" modified="2013-07-24" version="1">MGTNDYQKGPRHGASRSSSTGKRSSGASRPRREPLQDNYYYEAPPRGWKEGDAFQDISSYSSPAKRRADQKAMEEQRRSTQQSGGRRPQKSSSQDIYSNSRPVKKGRPKRWGVGKTIVALVLVLVITVGGSVAYVLSGLTMTSIPKSDSALGIQAGAMSDSQITNIALFGLDSREDGNTGRSDVVMVLSVDRRHHALKLTSILRDSEVSIDGYGYDKITHAYAYGGPELAIKTLNQNFNLDIRNYVTVNFYQMAEIVDAFGGVDIQLTAEEVYSLNENLWNLSQESPGSVVSSDFIPNVNGEIDLINGPYQDGEYHLNGNQAVAYARIRHLDSDNVRASRQQTVLQALLTSLKKKNIFQLPGLVRKVFSVCETSLNVGDMLGMSPIVFGGLNLETLSIPGEEEQAYGATLDSGAWVYEYDLTAASQHINRFIYEEESPYYTGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="15" xmlns="http://uniprot.org/uniprot">
    <accession>R6YNE6</accession>
    <name>R6YNE6_9FIRM</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Shikimate kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ORF">BN815_01372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">MGS:94</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EMBL" id="CBGU010000194">
        <property type="protein sequence ID" value="CDD30106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30106">
        <property type="protein sequence ID" value="CDD30106"/>
        <property type="gene ID" value="BN815_01372"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="CDD30106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="183" mass="21497" checksum="03B37BD462AB23B1" modified="2013-07-24" version="1">MKLIFLFGNAAVGKMTVGQELMKLTGLRLFHNHMTIEPVIEIFGTYNSVAIQRLREVVFEEFAKSDCYGMIFTFMWAFDQQADWDYVEHIKDIFRPYGTEFYYVELVASQKVRLERNATENRLRHKASKRDVELSNQRLLQDDAKFRLESHPGEIPFANYLRLDNTHLSPQQAAEKIREAWGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2013-07-24" modified="2022-08-03" version="24" xmlns="http://uniprot.org/uniprot">
    <accession>R6ZJJ6</accession>
    <name>R6ZJJ6_9FIRM</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphoesterase</fullName>
            <ecNumber evidence="2">3.1.4.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ORF">BN815_01833</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Firmicutes bacterium CAG:94</name>
        <dbReference type="NCBI Taxonomy" id="1262989"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Firmicutes</taxon>
            <taxon>environmental samples</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="submission" date="2012-11" db="EMBL/GenBank/DDBJ databases">
            <title>Dependencies among metagenomic species, viruses, plasmids and units of genetic variation.</title>
            <authorList>
                <person name="Nielsen H.B."/>
                <person name="Almeida M."/>
                <person name="Juncker A.S."/>
                <person name="Rasmussen S."/>
                <person name="Li J."/>
                <person name="Sunagawa S."/>
                <person name="Plichta D."/>
                <person name="Gautier L."/>
                <person name="Le Chatelier E."/>
                <person name="Peletier E."/>
                <person name="Bonde I."/>
                <person name="Nielsen T."/>
                <person name="Manichanh C."/>
                <person name="Arumugam M."/>
                <person name="Batto J."/>
                <person name="Santos M.B.Q.D."/>
                <person name="Blom N."/>
                <person name="Borruel N."/>
                <person name="Burgdorf K.S."/>
                <person name="Boumezbeur F."/>
                <person name="Casellas F."/>
                <person name="Dore J."/>
                <person name="Guarner F."/>
                <person name="Hansen T."/>
                <person name="Hildebrand F."/>
                <person name="Kaas R.S."/>
                <person name="Kennedy S."/>
                <person name="Kristiansen K."/>
                <person name="Kultima J.R."/>
                <person name="Leonard P."/>
                <person name="Levenez F."/>
                <person name="Lund O."/>
                <person name="Moumen B."/>
                <person name="Le Paslier D."/>
                <person name="Pons N."/>
                <person name="Pedersen O."/>
                <person name="Prifti E."/>
                <person name="Qin J."/>
                <person name="Raes J."/>
                <person name="Tap J."/>
                <person name="Tims S."/>
                <person name="Ussery D.W."/>
                <person name="Yamada T."/>
                <person name="MetaHit consortium"/>
                <person name="Renault P."/>
                <person name="Sicheritz-Ponten T."/>
                <person name="Bork P."/>
                <person name="Wang J."/>
                <person name="Brunak S."/>
                <person name="Ehrlich S.D."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">MGS:94</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.-" evidence="2"/>
    <dbReference type="EMBL" id="CBGU010000286">
        <property type="protein sequence ID" value="CDD30622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="CDD30622">
        <property type="protein sequence ID" value="CDD30622"/>
        <property type="gene ID" value="BN815_01833"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000018237">
        <property type="component" value="Unassembled WGS sequence"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000979">
        <property type="entry name" value="Phosphodiesterase_MJ0936/Vps29"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11124">
        <property type="entry name" value="PTHR11124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00040">
        <property type="entry name" value="yfcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="3">
        <location>
            <begin position="1"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="CDD30622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000018237"/>
        </source>
    </evidence>
    <sequence length="155" mass="17015" checksum="EDA24EFBF4D52897" modified="2013-07-24" version="1">MRILVVSDTHGNDSSLRRAILAQPKAEVVIHLGDGEEELLRAKRAFPEKMFLAVRGNCDFGSDLPLTGEFTAQGVKIFYTHGHYYGVKSGLYTFACAARERGAQVALYGHTHNALEDYDDGLYLLNPGSLNSWEATYGTVDITPQGIVTNIVKLP</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>